Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80234.t1 | XP_003603362.1 | 98.5 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 5.90E-50 | 206.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80234.t1 | P14009 | 65.1 | 86 | 28 | 2 | 45 | 129 | 52 | 136 | 1.9e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80234.t1 | B7FMX8 | 98.5 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 4.3e-50 | 206.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene80234 | 0.874711 | 5.45E-68 | -1.69E-46 |
| MS.gene049173 | MS.gene80234 | 0.803152 | 4.00E-49 | -1.69E-46 |
| MS.gene049181 | MS.gene80234 | -0.808463 | 3.06E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene80234 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene80234 | 0.858263 | 9.29E-63 | -1.69E-46 |
| MS.gene049232 | MS.gene80234 | 0.896679 | 2.93E-76 | -1.69E-46 |
| MS.gene049285 | MS.gene80234 | 0.911181 | 8.13E-83 | -1.69E-46 |
| MS.gene049320 | MS.gene80234 | 0.913554 | 5.38E-84 | -1.69E-46 |
| MS.gene049600 | MS.gene80234 | 0.829411 | 5.23E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene80234 | 0.84804 | 7.90E-60 | -1.69E-46 |
| MS.gene049633 | MS.gene80234 | 0.855965 | 4.43E-62 | -1.69E-46 |
| MS.gene049657 | MS.gene80234 | 0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene049865 | MS.gene80234 | 0.828607 | 8.18E-55 | -1.69E-46 |
| MS.gene04986 | MS.gene80234 | -0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene80234 | 0.910018 | 2.99E-82 | -1.69E-46 |
| MS.gene050163 | MS.gene80234 | 0.84488 | 5.75E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene80234 | 0.850471 | 1.66E-60 | -1.69E-46 |
| MS.gene050170 | MS.gene80234 | 0.88264 | 8.79E-71 | -1.69E-46 |
| MS.gene050216 | MS.gene80234 | 0.851783 | 7.09E-61 | -1.69E-46 |
| MS.gene050323 | MS.gene80234 | 0.89525 | 1.15E-75 | -1.69E-46 |
| MS.gene050333 | MS.gene80234 | 0.870279 | 1.65E-66 | -1.69E-46 |
| MS.gene050496 | MS.gene80234 | 0.920652 | 9.76E-88 | -1.69E-46 |
| MS.gene050502 | MS.gene80234 | 0.828442 | 8.97E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene80234 | 0.895574 | 8.42E-76 | -1.69E-46 |
| MS.gene050518 | MS.gene80234 | 0.900214 | 9.16E-78 | -1.69E-46 |
| MS.gene050577 | MS.gene80234 | 0.865294 | 6.55E-65 | -1.69E-46 |
| MS.gene050612 | MS.gene80234 | 0.917364 | 5.81E-86 | -1.69E-46 |
| MS.gene050662 | MS.gene80234 | 0.845349 | 4.29E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene80234 | 0.884605 | 1.66E-71 | -1.69E-46 |
| MS.gene050697 | MS.gene80234 | 0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene80234 | 0.896876 | 2.42E-76 | -1.69E-46 |
| MS.gene050747 | MS.gene80234 | 0.826901 | 2.10E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene80234 | 0.897159 | 1.84E-76 | -1.69E-46 |
| MS.gene05080 | MS.gene80234 | 0.850895 | 1.26E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene80234 | 0.869294 | 3.45E-66 | -1.69E-46 |
| MS.gene050871 | MS.gene80234 | 0.867616 | 1.20E-65 | -1.69E-46 |
| MS.gene050876 | MS.gene80234 | 0.860416 | 2.10E-63 | -1.69E-46 |
| MS.gene050883 | MS.gene80234 | -0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene80234 | 0.835279 | 1.84E-56 | -1.69E-46 |
| MS.gene050950 | MS.gene80234 | 0.826848 | 2.17E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene80234 | 0.906383 | 1.57E-80 | -1.69E-46 |
| MS.gene05100 | MS.gene80234 | 0.812814 | 3.51E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene80234 | 0.830661 | 2.59E-55 | -1.69E-46 |
| MS.gene051317 | MS.gene80234 | 0.844041 | 9.66E-59 | -1.69E-46 |
| MS.gene051364 | MS.gene80234 | -0.81623 | 6.16E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene80234 | -0.818917 | 1.53E-52 | -1.69E-46 |
| MS.gene051367 | MS.gene80234 | -0.80293 | 4.44E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene80234 | 0.823778 | 1.15E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene80234 | 0.870021 | 2.00E-66 | -1.69E-46 |
| MS.gene051810 | MS.gene80234 | 0.844704 | 6.41E-59 | -1.69E-46 |
| MS.gene051949 | MS.gene80234 | 0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene052066 | MS.gene80234 | 0.821045 | 4.98E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene80234 | 0.841676 | 4.11E-58 | -1.69E-46 |
| MS.gene052271 | MS.gene80234 | 0.807112 | 5.92E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene80234 | 0.877031 | 8.70E-69 | -1.69E-46 |
| MS.gene052486 | MS.gene80234 | 0.880569 | 4.93E-70 | -1.69E-46 |
| MS.gene052503 | MS.gene80234 | 0.819592 | 1.07E-52 | -1.69E-46 |
| MS.gene052504 | MS.gene80234 | 0.857803 | 1.27E-62 | -1.69E-46 |
| MS.gene052506 | MS.gene80234 | 0.876516 | 1.31E-68 | -1.69E-46 |
| MS.gene052615 | MS.gene80234 | 0.828802 | 7.34E-55 | -1.69E-46 |
| MS.gene052820 | MS.gene80234 | 0.807027 | 6.18E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene80234 | 0.891087 | 5.47E-74 | -1.69E-46 |
| MS.gene052823 | MS.gene80234 | 0.814653 | 1.38E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene80234 | 0.805027 | 1.63E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene80234 | 0.882013 | 1.49E-70 | -1.69E-46 |
| MS.gene052966 | MS.gene80234 | 0.859063 | 5.36E-63 | -1.69E-46 |
| MS.gene053203 | MS.gene80234 | 0.86801 | 8.97E-66 | -1.69E-46 |
| MS.gene053207 | MS.gene80234 | 0.810043 | 1.40E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene80234 | 0.882345 | 1.13E-70 | -1.69E-46 |
| MS.gene053286 | MS.gene80234 | 0.885757 | 6.18E-72 | -1.69E-46 |
| MS.gene053420 | MS.gene80234 | -0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene80234 | 0.851029 | 1.16E-60 | -1.69E-46 |
| MS.gene053479 | MS.gene80234 | 0.823877 | 1.09E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene80234 | 0.80255 | 5.32E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene80234 | 0.880786 | 4.12E-70 | -1.69E-46 |
| MS.gene053626 | MS.gene80234 | 0.825036 | 5.83E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene80234 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene80234 | 0.837864 | 4.04E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene80234 | 0.841474 | 4.65E-58 | -1.69E-46 |
| MS.gene053916 | MS.gene80234 | 0.839423 | 1.60E-57 | -1.69E-46 |
| MS.gene054408 | MS.gene80234 | 0.809281 | 2.04E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene80234 | 0.853254 | 2.70E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene80234 | 0.852823 | 3.58E-61 | -1.69E-46 |
| MS.gene054642 | MS.gene80234 | 0.896042 | 5.39E-76 | -1.69E-46 |
| MS.gene05470 | MS.gene80234 | 0.835404 | 1.71E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene80234 | 0.929674 | 4.95E-93 | -1.69E-46 |
| MS.gene055154 | MS.gene80234 | -0.813826 | 2.10E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene80234 | 0.820086 | 8.26E-53 | -1.69E-46 |
| MS.gene055251 | MS.gene80234 | -0.802316 | 5.94E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene80234 | 0.913251 | 7.64E-84 | -1.69E-46 |
| MS.gene055502 | MS.gene80234 | 0.877513 | 5.92E-69 | -1.69E-46 |
| MS.gene055577 | MS.gene80234 | 0.854489 | 1.19E-61 | -1.69E-46 |
| MS.gene055634 | MS.gene80234 | 0.847752 | 9.48E-60 | -1.69E-46 |
| MS.gene055638 | MS.gene80234 | 0.81732 | 3.51E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene80234 | 0.859059 | 5.37E-63 | -1.69E-46 |
| MS.gene055748 | MS.gene80234 | 0.860131 | 2.56E-63 | -1.69E-46 |
| MS.gene055750 | MS.gene80234 | 0.883963 | 2.87E-71 | -1.69E-46 |
| MS.gene055751 | MS.gene80234 | 0.877441 | 6.27E-69 | -1.69E-46 |
| MS.gene055776 | MS.gene80234 | 0.910212 | 2.41E-82 | -1.69E-46 |
| MS.gene055849 | MS.gene80234 | 0.870191 | 1.76E-66 | -1.69E-46 |
| MS.gene05589 | MS.gene80234 | 0.871539 | 6.33E-67 | -1.69E-46 |
| MS.gene055941 | MS.gene80234 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene80234 | -0.839503 | 1.52E-57 | -1.69E-46 |
| MS.gene056046 | MS.gene80234 | 0.865865 | 4.33E-65 | -1.69E-46 |
| MS.gene056374 | MS.gene80234 | 0.841825 | 3.76E-58 | -1.69E-46 |
| MS.gene056446 | MS.gene80234 | 0.825214 | 5.29E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene80234 | 0.925374 | 2.00E-90 | -1.69E-46 |
| MS.gene056510 | MS.gene80234 | 0.910289 | 2.21E-82 | -1.69E-46 |
| MS.gene056657 | MS.gene80234 | 0.913153 | 8.56E-84 | -1.69E-46 |
| MS.gene056692 | MS.gene80234 | 0.846407 | 2.22E-59 | -1.69E-46 |
| MS.gene056761 | MS.gene80234 | -0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene056878 | MS.gene80234 | 0.843246 | 1.58E-58 | -1.69E-46 |
| MS.gene056898 | MS.gene80234 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene80234 | 0.836168 | 1.10E-56 | -1.69E-46 |
| MS.gene057086 | MS.gene80234 | 0.80287 | 4.57E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene80234 | 0.840816 | 6.92E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene80234 | 0.833097 | 6.49E-56 | -1.69E-46 |
| MS.gene057687 | MS.gene80234 | 0.834121 | 3.60E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene80234 | 0.841778 | 3.87E-58 | -1.69E-46 |
| MS.gene057872 | MS.gene80234 | 0.837929 | 3.89E-57 | -1.69E-46 |
| MS.gene05787 | MS.gene80234 | 0.815181 | 1.05E-51 | -1.69E-46 |
| MS.gene058111 | MS.gene80234 | -0.80018 | 1.63E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene80234 | -0.837316 | 5.58E-57 | -1.69E-46 |
| MS.gene058338 | MS.gene80234 | 0.819292 | 1.25E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene80234 | 0.855962 | 4.44E-62 | -1.69E-46 |
| MS.gene058419 | MS.gene80234 | 0.902768 | 6.91E-79 | -1.69E-46 |
| MS.gene058544 | MS.gene80234 | 0.842836 | 2.03E-58 | -1.69E-46 |
| MS.gene058719 | MS.gene80234 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene80234 | 0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene80234 | 0.87302 | 2.03E-67 | -1.69E-46 |
| MS.gene058774 | MS.gene80234 | 0.824414 | 8.18E-54 | -1.69E-46 |
| MS.gene058775 | MS.gene80234 | 0.821904 | 3.15E-53 | -1.69E-46 |
| MS.gene058777 | MS.gene80234 | 0.809601 | 1.75E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene80234 | 0.821287 | 4.38E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene80234 | 0.911214 | 7.83E-83 | -1.69E-46 |
| MS.gene059023 | MS.gene80234 | 0.857563 | 1.50E-62 | -1.69E-46 |
| MS.gene05913 | MS.gene80234 | 0.831304 | 1.80E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene80234 | 0.831168 | 1.95E-55 | -1.69E-46 |
| MS.gene059667 | MS.gene80234 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene80234 | 0.88951 | 2.27E-73 | -1.69E-46 |
| MS.gene059699 | MS.gene80234 | -0.807248 | 5.55E-50 | -1.69E-46 |
| MS.gene059701 | MS.gene80234 | -0.813752 | 2.18E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene80234 | -0.820205 | 7.76E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene80234 | 0.876775 | 1.07E-68 | -1.69E-46 |
| MS.gene059756 | MS.gene80234 | 0.82996 | 3.84E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene80234 | 0.818189 | 2.23E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene80234 | 0.883447 | 4.45E-71 | -1.69E-46 |
| MS.gene059865 | MS.gene80234 | 0.916022 | 2.93E-85 | -1.69E-46 |
| MS.gene06000 | MS.gene80234 | 0.849928 | 2.36E-60 | -1.69E-46 |
| MS.gene060303 | MS.gene80234 | 0.800043 | 1.73E-48 | -1.69E-46 |
| MS.gene060337 | MS.gene80234 | -0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene80234 | 0.85526 | 7.11E-62 | -1.69E-46 |
| MS.gene060526 | MS.gene80234 | 0.832489 | 9.18E-56 | -1.69E-46 |
| MS.gene060595 | MS.gene80234 | -0.832159 | 1.11E-55 | -1.69E-46 |
| MS.gene060703 | MS.gene80234 | 0.887709 | 1.12E-72 | -1.69E-46 |
| MS.gene060762 | MS.gene80234 | 0.857867 | 1.22E-62 | -1.69E-46 |
| MS.gene060778 | MS.gene80234 | 0.878093 | 3.71E-69 | -1.69E-46 |
| MS.gene06077 | MS.gene80234 | 0.899019 | 3.00E-77 | -1.69E-46 |
| MS.gene060835 | MS.gene80234 | 0.811185 | 7.95E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene80234 | 0.808466 | 3.05E-50 | -1.69E-46 |
| MS.gene06097 | MS.gene80234 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene80234 | 0.912192 | 2.58E-83 | -1.69E-46 |
| MS.gene061150 | MS.gene80234 | 0.839452 | 1.57E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80234.t1 | MTR_3g106740 | 98.462 | 130 | 2 | 0 | 1 | 130 | 1 | 130 | 1.83e-85 | 245 |
| MS.gene80234.t1 | MTR_1g012690 | 59.091 | 154 | 37 | 3 | 1 | 129 | 1 | 153 | 9.54e-51 | 158 |
| MS.gene80234.t1 | MTR_1g012700 | 57.317 | 164 | 34 | 3 | 1 | 129 | 1 | 163 | 1.26e-50 | 158 |
| MS.gene80234.t1 | MTR_3g106750 | 73.282 | 131 | 30 | 2 | 1 | 129 | 1 | 128 | 1.63e-48 | 152 |
| MS.gene80234.t1 | MTR_1g012710 | 59.868 | 152 | 38 | 2 | 1 | 130 | 1 | 151 | 8.63e-48 | 150 |
| MS.gene80234.t1 | MTR_1g012630 | 78.571 | 84 | 17 | 1 | 46 | 129 | 127 | 209 | 4.82e-40 | 133 |
| MS.gene80234.t1 | MTR_4g108150 | 52.459 | 122 | 53 | 2 | 8 | 129 | 6 | 122 | 5.54e-35 | 117 |
| MS.gene80234.t1 | MTR_4g101260 | 51.969 | 127 | 55 | 3 | 8 | 129 | 6 | 131 | 7.44e-34 | 115 |
| MS.gene80234.t1 | MTR_2g026760 | 60.360 | 111 | 40 | 4 | 21 | 129 | 18 | 126 | 1.19e-33 | 114 |
| MS.gene80234.t1 | MTR_4g101280 | 63.218 | 87 | 30 | 2 | 44 | 129 | 57 | 142 | 2.53e-31 | 108 |
| MS.gene80234.t1 | MTR_4g101330 | 63.953 | 86 | 29 | 2 | 45 | 129 | 84 | 168 | 3.38e-30 | 107 |
| MS.gene80234.t1 | MTR_4g101310 | 60.000 | 85 | 32 | 2 | 46 | 129 | 50 | 133 | 2.55e-29 | 103 |
| MS.gene80234.t1 | MTR_4g101270 | 58.824 | 85 | 32 | 3 | 47 | 130 | 105 | 187 | 1.03e-23 | 90.9 |
| MS.gene80234.t1 | MTR_5g012340 | 44.828 | 87 | 45 | 2 | 44 | 129 | 92 | 176 | 8.45e-23 | 88.2 |
| MS.gene80234.t1 | MTR_5g012380 | 43.678 | 87 | 46 | 2 | 44 | 129 | 85 | 169 | 3.64e-22 | 86.7 |
| MS.gene80234.t1 | MTR_2g026920 | 45.679 | 81 | 41 | 2 | 50 | 130 | 118 | 195 | 2.45e-17 | 74.3 |
| MS.gene80234.t1 | MTR_2g026930 | 46.250 | 80 | 40 | 2 | 50 | 129 | 122 | 198 | 2.47e-17 | 74.7 |
| MS.gene80234.t1 | MTR_3g082100 | 44.828 | 87 | 47 | 1 | 44 | 130 | 251 | 336 | 1.60e-15 | 71.6 |
| MS.gene80234.t1 | MTR_2g026775 | 48.718 | 78 | 34 | 3 | 54 | 129 | 686 | 759 | 2.15e-15 | 71.6 |
| MS.gene80234.t1 | MTR_4g115360 | 54.023 | 87 | 37 | 3 | 44 | 129 | 148 | 232 | 5.27e-13 | 63.5 |
| MS.gene80234.t1 | MTR_2g026820 | 52.113 | 71 | 29 | 3 | 52 | 121 | 542 | 608 | 1.85e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80234.t1 | AT2G45180 | 74.419 | 86 | 21 | 1 | 44 | 129 | 49 | 133 | 3.27e-37 | 123 |
| MS.gene80234.t1 | AT1G62510 | 68.235 | 85 | 25 | 2 | 46 | 129 | 66 | 149 | 7.74e-33 | 113 |
| MS.gene80234.t1 | AT4G12490 | 41.758 | 182 | 52 | 4 | 1 | 129 | 1 | 181 | 7.86e-32 | 111 |
| MS.gene80234.t1 | AT4G12480 | 64.368 | 87 | 29 | 2 | 44 | 129 | 82 | 167 | 1.01e-31 | 110 |
| MS.gene80234.t1 | AT4G12470 | 61.111 | 90 | 33 | 2 | 42 | 130 | 73 | 161 | 1.75e-31 | 110 |
| MS.gene80234.t1 | AT5G46890 | 54.962 | 131 | 52 | 5 | 1 | 129 | 1 | 126 | 1.89e-31 | 108 |
| MS.gene80234.t1 | AT4G12500 | 64.368 | 87 | 29 | 2 | 44 | 129 | 91 | 176 | 2.45e-31 | 110 |
| MS.gene80234.t1 | AT5G46900 | 69.663 | 89 | 23 | 3 | 41 | 129 | 42 | 126 | 2.66e-31 | 108 |
| MS.gene80234.t1 | AT1G12090 | 68.293 | 82 | 24 | 2 | 49 | 129 | 57 | 137 | 3.57e-31 | 108 |
| MS.gene80234.t1 | AT4G00165 | 54.808 | 104 | 43 | 3 | 29 | 129 | 26 | 128 | 5.86e-31 | 107 |
| MS.gene80234.t1 | AT4G00165 | 54.808 | 104 | 43 | 3 | 29 | 129 | 26 | 128 | 5.86e-31 | 107 |
| MS.gene80234.t1 | AT4G12520 | 54.198 | 131 | 55 | 5 | 1 | 129 | 1 | 128 | 2.93e-30 | 105 |
| MS.gene80234.t1 | AT4G12510 | 54.198 | 131 | 55 | 5 | 1 | 129 | 1 | 128 | 2.93e-30 | 105 |
| MS.gene80234.t1 | AT4G22460 | 51.852 | 108 | 52 | 0 | 23 | 130 | 26 | 133 | 3.48e-29 | 103 |
| MS.gene80234.t1 | AT4G12550 | 56.977 | 86 | 35 | 2 | 45 | 129 | 26 | 110 | 2.27e-28 | 100 |
| MS.gene80234.t1 | AT1G12100 | 43.651 | 126 | 65 | 4 | 7 | 129 | 9 | 131 | 3.60e-27 | 98.2 |
| MS.gene80234.t1 | AT4G12545 | 56.180 | 89 | 34 | 3 | 42 | 129 | 23 | 107 | 7.49e-26 | 94.0 |
| MS.gene80234.t1 | AT4G12530 | 47.126 | 87 | 45 | 1 | 44 | 130 | 31 | 116 | 9.77e-23 | 86.3 |
| MS.gene80234.t1 | AT3G22142 | 56.977 | 86 | 32 | 4 | 47 | 130 | 1397 | 1479 | 1.04e-22 | 92.8 |
| MS.gene80234.t1 | AT2G10940 | 55.172 | 87 | 36 | 3 | 44 | 129 | 205 | 289 | 1.32e-21 | 87.4 |
| MS.gene80234.t1 | AT2G10940 | 55.172 | 87 | 36 | 3 | 44 | 129 | 205 | 289 | 1.32e-21 | 87.4 |
| MS.gene80234.t1 | AT3G22120 | 49.412 | 85 | 41 | 2 | 47 | 130 | 267 | 350 | 1.48e-18 | 80.1 |
| MS.gene80234.t1 | AT4G15160 | 50.000 | 86 | 40 | 3 | 47 | 130 | 99 | 183 | 1.74e-18 | 77.4 |
| MS.gene80234.t1 | AT3G22120 | 49.412 | 85 | 41 | 2 | 47 | 130 | 250 | 333 | 2.54e-18 | 79.3 |
| MS.gene80234.t1 | AT4G15160 | 50.000 | 86 | 40 | 3 | 47 | 130 | 181 | 265 | 5.52e-18 | 77.8 |
| MS.gene80234.t1 | AT4G22490 | 37.500 | 96 | 53 | 3 | 37 | 130 | 27 | 117 | 6.63e-16 | 68.9 |
| MS.gene80234.t1 | AT1G62500 | 43.529 | 85 | 45 | 3 | 47 | 130 | 212 | 294 | 6.34e-15 | 69.7 |
Find 42 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATGTTGTGCATTGATTA+AGG | 0.202840 | 3.4:+93005479 | MS.gene80234:CDS |
| AGCACAAACCCCTAGCTTTA+AGG | 0.218235 | 3.4:-93005406 | None:intergenic |
| GGGTTGGTTAATGTTGTTAT+TGG | 0.240421 | 3.4:+93005438 | MS.gene80234:CDS |
| TCCTTAGGGCATTGACCTTT+GGG | 0.253417 | 3.4:-93005381 | None:intergenic |
| ATCCTTAGGGCATTGACCTT+TGG | 0.263717 | 3.4:-93005382 | None:intergenic |
| GATTAAGGGTTTGGCTGATT+TGG | 0.309202 | 3.4:+93005494 | MS.gene80234:CDS |
| AAGAGAAAGCACTAAAATTA+AGG | 0.315935 | 3.4:-93005277 | None:intergenic |
| TTGTCTTTGCACTGCACTTA+AGG | 0.338630 | 3.4:+93005527 | MS.gene80234:CDS |
| CCTAGCTTTAAGGTATCCTT+AGG | 0.341849 | 3.4:-93005396 | None:intergenic |
| AAATGTTGTGCATTGATTAA+GGG | 0.358491 | 3.4:+93005480 | MS.gene80234:CDS |
| GAAGGTGTTGGCTTTGGTGA+TGG | 0.414445 | 3.4:-93005336 | None:intergenic |
| CCTTTGGGTGAAGGTGGAAC+AGG | 0.427685 | 3.4:-93005366 | None:intergenic |
| GTTATTGGAAACCCTCCTTC+AGG | 0.428430 | 3.4:+93005453 | MS.gene80234:CDS |
| TTGTGCATTGATTAAGGGTT+TGG | 0.429971 | 3.4:+93005485 | MS.gene80234:CDS |
| AGGAGCACGCTGAGCGTGAT+AGG | 0.432511 | 3.4:-93005579 | None:intergenic |
| GGGCATTGACCTTTGGGTGA+AGG | 0.436950 | 3.4:-93005375 | None:intergenic |
| AATTAAGGCAGAGAATTTGT+TGG | 0.438270 | 3.4:-93005262 | None:intergenic |
| GCAGGTGAAGGTGTTGGCTT+TGG | 0.458002 | 3.4:-93005342 | None:intergenic |
| TAAGGGTTTGGCTGATTTGG+AGG | 0.464987 | 3.4:+93005497 | MS.gene80234:CDS |
| ATTGGAATCCTTAGGGACAT+TGG | 0.481064 | 3.4:-93005635 | None:intergenic |
| GGTGAAGGTGGAACAGGAGC+AGG | 0.481606 | 3.4:-93005360 | None:intergenic |
| GCACTTAAGGCTAATGTGCT+TGG | 0.487972 | 3.4:+93005540 | MS.gene80234:CDS |
| CCTGGTTTCCAATGTCCCTA+AGG | 0.488513 | 3.4:+93005627 | MS.gene80234:CDS |
| CCTAAGGATACCTTAAAGCT+AGG | 0.505679 | 3.4:+93005396 | MS.gene80234:CDS |
| CTAAGGATACCTTAAAGCTA+GGG | 0.512185 | 3.4:+93005397 | MS.gene80234:CDS |
| GGTGTTGGCTTTGGTGATGG+TGG | 0.522065 | 3.4:-93005333 | None:intergenic |
| CATTGACCTTTGGGTGAAGG+TGG | 0.538821 | 3.4:-93005372 | None:intergenic |
| CCTTAGGGACATTGGAAACC+AGG | 0.543402 | 3.4:-93005627 | None:intergenic |
| ACATTGGAAACCAGGAGGGA+CGG | 0.567925 | 3.4:-93005619 | None:intergenic |
| CCTGTTCCACCTTCACCCAA+AGG | 0.572122 | 3.4:+93005366 | MS.gene80234:CDS |
| CTAGCTTTAAGGTATCCTTA+GGG | 0.574702 | 3.4:-93005395 | None:intergenic |
| AACATTTACTACCTGAAGGA+GGG | 0.575828 | 3.4:-93005464 | None:intergenic |
| ACAGGAGCAGGTGAAGGTGT+TGG | 0.576951 | 3.4:-93005348 | None:intergenic |
| TGATGGTGGACAATTAGCTT+CGG | 0.580942 | 3.4:-93005319 | None:intergenic |
| ACCCAAAGGTCAATGCCCTA+AGG | 0.586732 | 3.4:+93005380 | MS.gene80234:CDS |
| GGTGGAACAGGAGCAGGTGA+AGG | 0.595926 | 3.4:-93005354 | None:intergenic |
| AGCTTCGGTGAATGTTGAGT+AGG | 0.595958 | 3.4:-93005304 | None:intergenic |
| CAACATTTACTACCTGAAGG+AGG | 0.605436 | 3.4:-93005465 | None:intergenic |
| GCACAACATTTACTACCTGA+AGG | 0.630292 | 3.4:-93005468 | None:intergenic |
| TAAGGATACCTTAAAGCTAG+GGG | 0.646982 | 3.4:+93005398 | MS.gene80234:CDS |
| AGGGACATTGGAAACCAGGA+GGG | 0.669232 | 3.4:-93005623 | None:intergenic |
| TAGGGACATTGGAAACCAGG+AGG | 0.715268 | 3.4:-93005624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGTTGTGCATTGATTAA+GGG | + | chr3.4:93005480-93005499 | MS.gene80234:CDS | 25.0% |
| !!! | AAGAGAAAGCACTAAAATTA+AGG | - | chr3.4:93005280-93005299 | None:intergenic | 25.0% |
| !!! | TAAATGTTGTGCATTGATTA+AGG | + | chr3.4:93005479-93005498 | MS.gene80234:CDS | 25.0% |
| AATTAAGGCAGAGAATTTGT+TGG | - | chr3.4:93005265-93005284 | None:intergenic | 30.0% | |
| AACATTTACTACCTGAAGGA+GGG | - | chr3.4:93005467-93005486 | None:intergenic | 35.0% | |
| CTAAGGATACCTTAAAGCTA+GGG | + | chr3.4:93005397-93005416 | MS.gene80234:CDS | 35.0% | |
| TAAGGATACCTTAAAGCTAG+GGG | + | chr3.4:93005398-93005417 | MS.gene80234:CDS | 35.0% | |
| !! | CTAGCTTTAAGGTATCCTTA+GGG | - | chr3.4:93005398-93005417 | None:intergenic | 35.0% |
| !! | GGGTTGGTTAATGTTGTTAT+TGG | + | chr3.4:93005438-93005457 | MS.gene80234:CDS | 35.0% |
| !! | TTGTGCATTGATTAAGGGTT+TGG | + | chr3.4:93005485-93005504 | MS.gene80234:CDS | 35.0% |
| CAACATTTACTACCTGAAGG+AGG | - | chr3.4:93005468-93005487 | None:intergenic | 40.0% | |
| CCTAAGGATACCTTAAAGCT+AGG | + | chr3.4:93005396-93005415 | MS.gene80234:CDS | 40.0% | |
| GATTAAGGGTTTGGCTGATT+TGG | + | chr3.4:93005494-93005513 | MS.gene80234:CDS | 40.0% | |
| GCACAACATTTACTACCTGA+AGG | - | chr3.4:93005471-93005490 | None:intergenic | 40.0% | |
| TTGTCTTTGCACTGCACTTA+AGG | + | chr3.4:93005527-93005546 | MS.gene80234:CDS | 40.0% | |
| !! | CCTAGCTTTAAGGTATCCTT+AGG | - | chr3.4:93005399-93005418 | None:intergenic | 40.0% |
| !! | GGGTTTGTGCTGATCTTTTA+GGG | + | chr3.4:93005418-93005437 | MS.gene80234:CDS | 40.0% |
| !! | TGATGGTGGACAATTAGCTT+CGG | - | chr3.4:93005322-93005341 | None:intergenic | 40.0% |
| !!! | CGGTTTTTTGACATGCACTA+AGG | - | chr3.4:93005602-93005621 | None:intergenic | 40.0% |
| !!! | TTGTGCTGATCTTTTAGGGT+TGG | + | chr3.4:93005422-93005441 | MS.gene80234:CDS | 40.0% |
| AGCTTCGGTGAATGTTGAGT+AGG | - | chr3.4:93005307-93005326 | None:intergenic | 45.0% | |
| GCACTTAAGGCTAATGTGCT+TGG | + | chr3.4:93005540-93005559 | MS.gene80234:CDS | 45.0% | |
| GTTATTGGAAACCCTCCTTC+AGG | + | chr3.4:93005453-93005472 | MS.gene80234:CDS | 45.0% | |
| !! | AGCACAAACCCCTAGCTTTA+AGG | - | chr3.4:93005409-93005428 | None:intergenic | 45.0% |
| !! | ATCCTTAGGGCATTGACCTT+TGG | - | chr3.4:93005385-93005404 | None:intergenic | 45.0% |
| !! | GGGGTTTGTGCTGATCTTTT+AGG | + | chr3.4:93005417-93005436 | MS.gene80234:CDS | 45.0% |
| !! | TAAGGGTTTGGCTGATTTGG+AGG | + | chr3.4:93005497-93005516 | MS.gene80234:CDS | 45.0% |
| !! | TCCTTAGGGCATTGACCTTT+GGG | - | chr3.4:93005384-93005403 | None:intergenic | 45.0% |
| ACATTGGAAACCAGGAGGGA+CGG | - | chr3.4:93005622-93005641 | None:intergenic | 50.0% | |
| ACCCAAAGGTCAATGCCCTA+AGG | + | chr3.4:93005380-93005399 | MS.gene80234:CDS | 50.0% | |
| AGGGACATTGGAAACCAGGA+GGG | - | chr3.4:93005626-93005645 | None:intergenic | 50.0% | |
| CATTGACCTTTGGGTGAAGG+TGG | - | chr3.4:93005375-93005394 | None:intergenic | 50.0% | |
| TAGGGACATTGGAAACCAGG+AGG | - | chr3.4:93005627-93005646 | None:intergenic | 50.0% | |
| TGTCAAAAAACCGTCCCTCC+TGG | + | chr3.4:93005609-93005628 | MS.gene80234:CDS | 50.0% | |
| !! | GAAGGTGTTGGCTTTGGTGA+TGG | - | chr3.4:93005339-93005358 | None:intergenic | 50.0% |
| CCTGTTCCACCTTCACCCAA+AGG | + | chr3.4:93005366-93005385 | MS.gene80234:CDS | 55.0% | |
| CCTTTGGGTGAAGGTGGAAC+AGG | - | chr3.4:93005369-93005388 | None:intergenic | 55.0% | |
| ! | ACAGGAGCAGGTGAAGGTGT+TGG | - | chr3.4:93005351-93005370 | None:intergenic | 55.0% |
| !! | GCAGGTGAAGGTGTTGGCTT+TGG | - | chr3.4:93005345-93005364 | None:intergenic | 55.0% |
| !! | GGGCATTGACCTTTGGGTGA+AGG | - | chr3.4:93005378-93005397 | None:intergenic | 55.0% |
| !! | GGTGTTGGCTTTGGTGATGG+TGG | - | chr3.4:93005336-93005355 | None:intergenic | 55.0% |
| GGTGAAGGTGGAACAGGAGC+AGG | - | chr3.4:93005363-93005382 | None:intergenic | 60.0% | |
| GGTGGAACAGGAGCAGGTGA+AGG | - | chr3.4:93005357-93005376 | None:intergenic | 60.0% | |
| ! | AGGAGCACGCTGAGCGTGAT+AGG | - | chr3.4:93005582-93005601 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93005255 | 93005647 | 93005255 | ID=MS.gene80234 |
| chr3.4 | mRNA | 93005255 | 93005647 | 93005255 | ID=MS.gene80234.t1;Parent=MS.gene80234 |
| chr3.4 | exon | 93005255 | 93005647 | 93005255 | ID=MS.gene80234.t1.exon1;Parent=MS.gene80234.t1 |
| chr3.4 | CDS | 93005255 | 93005647 | 93005255 | ID=cds.MS.gene80234.t1;Parent=MS.gene80234.t1 |
| Gene Sequence |
| Protein sequence |
