Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060464.t1 | XP_013448036.1 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 7.00E-111 | 410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060464.t1 | Q9C7A8 | 63.9 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 1.3e-70 | 267.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060464.t1 | I3SFH0 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 5.0e-111 | 410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060464 | MS.gene060466 | 0.956914 | 9.54E-115 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060464 | MS.gene062116 | PPI |
| MS.gene060464 | MS.gene85342 | PPI |
| MS.gene066552 | MS.gene060464 | PPI |
| MS.gene060464 | MS.gene071261 | PPI |
| MS.gene060464 | MS.gene070139 | PPI |
| MS.gene78156 | MS.gene060464 | PPI |
| MS.gene060464 | MS.gene025347 | PPI |
| MS.gene045765 | MS.gene060464 | PPI |
| MS.gene060464 | MS.gene066551 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060464.t1 | MTR_7g029455 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 6.47e-151 | 419 |
| MS.gene060464.t1 | MTR_7g029455 | 95.735 | 211 | 3 | 1 | 1 | 205 | 1 | 211 | 1.97e-148 | 413 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060464.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 9.23e-93 | 272 |
| MS.gene060464.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 9.23e-93 | 272 |
| MS.gene060464.t1 | AT3G12530 | 64.516 | 186 | 65 | 1 | 20 | 205 | 1 | 185 | 4.89e-84 | 249 |
| MS.gene060464.t1 | AT3G12530 | 67.123 | 146 | 48 | 0 | 1 | 146 | 1 | 146 | 8.05e-71 | 214 |
Find 0 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATGTTTTAAATAAAG+TGG | - | 47697:16562-16581 | MS.gene060464:intron | 10.0% |
| !!! | ATTTGAAGTTTATATATATA+AGG | - | 47697:14906-14925 | MS.gene060464:intron | 10.0% |
| !!! | TTAAAACATTTTATTATGTT+GGG | + | 47697:16556-16575 | MS.gene060464:intergenic | 10.0% |
| !!! | TTTAAAACATTTTATTATGT+TGG | + | 47697:16557-16576 | MS.gene060464:intergenic | 10.0% |
| !! | TAATAATAATCTCAAACAAT+GGG | + | 47697:13274-13293 | MS.gene060464:intergenic | 15.0% |
| !! | TGTAAATATGTATCTAAAAA+AGG | + | 47697:13438-13457 | MS.gene060464:intergenic | 15.0% |
| !! | TTAATAATAATCTCAAACAA+TGG | + | 47697:13275-13294 | MS.gene060464:intergenic | 15.0% |
| !! | TTACAATATATTCATAACAA+TGG | - | 47697:13453-13472 | MS.gene060464:intron | 15.0% |
| !!! | GAACTTTCTTTAAAATAATT+TGG | + | 47697:15048-15067 | MS.gene060464:intergenic | 15.0% |
| !! | AAAAAAATGCTGAATTAGTT+AGG | - | 47697:15600-15619 | MS.gene060464:intron | 20.0% |
| !! | AAAAAATGCTGAATTAGTTA+GGG | - | 47697:15601-15620 | MS.gene060464:intron | 20.0% |
| !! | AAAAATAACATCAAAGTTGA+TGG | + | 47697:13974-13993 | MS.gene060464:intergenic | 20.0% |
| !! | AAAATGAAATGTTTACACAA+AGG | + | 47697:16198-16217 | MS.gene060464:intergenic | 20.0% |
| !! | ACAATTTACATCATAATTCT+TGG | - | 47697:16750-16769 | MS.gene060464:intron | 20.0% |
| !! | ACTAGTATTATCAAGAAATT+AGG | + | 47697:16492-16511 | MS.gene060464:intergenic | 20.0% |
| !! | CTAGTATTATCAAGAAATTA+GGG | + | 47697:16491-16510 | MS.gene060464:intergenic | 20.0% |
| !! | GAAATTTCTACATAATGAAA+TGG | + | 47697:14508-14527 | MS.gene060464:intergenic | 20.0% |
| !! | GATTAAAAATTTATCTGCAA+TGG | - | 47697:16782-16801 | MS.gene060464:intron | 20.0% |
| !! | TGTTATTGTTAAAGTTAGTT+GGG | - | 47697:16314-16333 | MS.gene060464:intron | 20.0% |
| !! | TTATCAAATGCAAAAAATAG+CGG | + | 47697:14157-14176 | MS.gene060464:intergenic | 20.0% |
| !! | TTCTAAATCTAAATCTATAC+TGG | + | 47697:15221-15240 | MS.gene060464:intergenic | 20.0% |
| !! | TTTAAATAAAGTGGACATAT+GGG | - | 47697:16571-16590 | MS.gene060464:intron | 20.0% |
| !!! | AATTTCTTGATAATACTAGT+TGG | - | 47697:16492-16511 | MS.gene060464:intron | 20.0% |
| !!! | ATGGATGATAATTTTCAAAT+TGG | - | 47697:13236-13255 | MS.gene060464:CDS | 20.0% |
| !!! | CGATTTTCTTTAATTATTAG+CGG | - | 47697:13717-13736 | MS.gene060464:intron | 20.0% |
| !!! | GAATCTTTTTGGTAATTTAA+TGG | - | 47697:14857-14876 | MS.gene060464:intron | 20.0% |
| !!! | GTATAGTTTTATTCATGTTA+GGG | - | 47697:16060-16079 | MS.gene060464:intron | 20.0% |
| !!! | TCATATTTTTCAAAACTTAC+TGG | + | 47697:14546-14565 | MS.gene060464:intergenic | 20.0% |
| !!! | TGTATAGTTTTATTCATGTT+AGG | - | 47697:16059-16078 | MS.gene060464:intron | 20.0% |
| !!! | TTGCATTTAAAATTTCAAAC+TGG | - | 47697:14965-14984 | MS.gene060464:intron | 20.0% |
| !!! | TTGTTATTGTTAAAGTTAGT+TGG | - | 47697:16313-16332 | MS.gene060464:intron | 20.0% |
| !!! | TTGTTGGTTTAAATAATAAC+AGG | - | 47697:14379-14398 | MS.gene060464:intron | 20.0% |
| !!! | TTTTAAATAAAGTGGACATA+TGG | - | 47697:16570-16589 | MS.gene060464:intron | 20.0% |
| ! | AAAAGGGAAAATATCAACAT+AGG | - | 47697:15975-15994 | MS.gene060464:intron | 25.0% |
| ! | AAAGGGAAAATATCAACATA+GGG | - | 47697:15976-15995 | MS.gene060464:intron | 25.0% |
| ! | AAAGGTCTATTATAGAGAAA+AGG | - | 47697:15958-15977 | MS.gene060464:intron | 25.0% |
| ! | AAGGTCTATTATAGAGAAAA+GGG | - | 47697:15959-15978 | MS.gene060464:intron | 25.0% |
| ! | AATATATTCATAACAATGGC+AGG | - | 47697:13457-13476 | MS.gene060464:intron | 25.0% |
| ! | ACATTGTCATTGTTAGATTA+CGG | + | 47697:13863-13882 | MS.gene060464:intergenic | 25.0% |
| ! | AGGGTTTAATGTTGTATTTA+AGG | - | 47697:15995-16014 | MS.gene060464:intron | 25.0% |
| ! | ATATATTCATAACAATGGCA+GGG | - | 47697:13458-13477 | MS.gene060464:intron | 25.0% |
| ! | ATATCAAACAAACATACTCT+TGG | + | 47697:16933-16952 | MS.gene060464:intergenic | 25.0% |
| ! | ATGCATCTCTTTCATATATT+AGG | - | 47697:15253-15272 | MS.gene060464:intron | 25.0% |
| ! | ATGTTGCCTATAAAAAAGAA+GGG | - | 47697:16354-16373 | MS.gene060464:intron | 25.0% |
| ! | ATTAAATAGGAGAAAACAAG+AGG | - | 47697:15137-15156 | MS.gene060464:intron | 25.0% |
| ! | CTAGTCACAAACAAATATTA+TGG | + | 47697:14426-14445 | MS.gene060464:intergenic | 25.0% |
| ! | GAAAACAAAAAGAATGATGA+AGG | - | 47697:15509-15528 | MS.gene060464:intron | 25.0% |
| ! | GAAATGAATAGATATGTAAC+AGG | + | 47697:16723-16742 | MS.gene060464:intergenic | 25.0% |
| ! | GTACATAGCAAATAAGTAAA+TGG | + | 47697:16993-17012 | MS.gene060464:intergenic | 25.0% |
| ! | GTGGCATTATTATTAAATAG+CGG | - | 47697:14036-14055 | MS.gene060464:intron | 25.0% |
| ! | GTTATTGTTAGTTAGAGTTA+TGG | - | 47697:15416-15435 | MS.gene060464:intron | 25.0% |
| ! | TAAACCAACAAATTCTAAAC+TGG | + | 47697:14370-14389 | MS.gene060464:intergenic | 25.0% |
| ! | TATCAAACAAACATACTCTT+GGG | + | 47697:16932-16951 | MS.gene060464:intergenic | 25.0% |
| ! | TATGTTGCCTATAAAAAAGA+AGG | - | 47697:16353-16372 | MS.gene060464:intron | 25.0% |
| ! | TGATGTAAGTCAAAAATGTT+TGG | - | 47697:17268-17287 | MS.gene060464:intron | 25.0% |
| ! | TTAAAATTTCAAACTGGAAG+AGG | - | 47697:14971-14990 | MS.gene060464:intron | 25.0% |
| ! | TTAAAGTTAGTTGGGTAATT+AGG | - | 47697:16322-16341 | MS.gene060464:intron | 25.0% |
| ! | TTCTGCTTTCATTGTAAAAT+AGG | - | 47697:17490-17509 | MS.gene060464:CDS | 25.0% |
| ! | TTTAGAGATAAATTGTCTTG+AGG | + | 47697:15300-15319 | MS.gene060464:intergenic | 25.0% |
| ! | TTTATGCTTGGATATTGAAT+TGG | - | 47697:16617-16636 | MS.gene060464:intron | 25.0% |
| ! | TTTCTCCTATTTAATTACAG+CGG | + | 47697:15132-15151 | MS.gene060464:intergenic | 25.0% |
| !! | ATGGTTAATTTTGTTAGTAC+AGG | + | 47697:16974-16993 | MS.gene060464:intergenic | 25.0% |
| !! | TATTCCAGTTTAGAATTTGT+TGG | - | 47697:14363-14382 | MS.gene060464:intron | 25.0% |
| !! | TATTTCTTTTATCCCCAAAA+AGG | - | 47697:13608-13627 | MS.gene060464:intron | 25.0% |
| !! | TCATAGTTGAAAACCTTTTT+GGG | + | 47697:13624-13643 | MS.gene060464:intergenic | 25.0% |
| !! | TTAGTTTATTTCTCTTGTGA+AGG | - | 47697:14732-14751 | MS.gene060464:intron | 25.0% |
| !! | TTCATAGTTGAAAACCTTTT+TGG | + | 47697:13625-13644 | MS.gene060464:intergenic | 25.0% |
| !!! | AACAATGACAATGTTTTAGT+TGG | - | 47697:13869-13888 | MS.gene060464:CDS | 25.0% |
| !!! | CTTACACTTTTTTTTATGCT+TGG | - | 47697:16605-16624 | MS.gene060464:intron | 25.0% |
| !!! | CTTTAAAATAATTTGGTAGC+AGG | + | 47697:15041-15060 | MS.gene060464:intergenic | 25.0% |
| !!! | GGTAATTTTTCGAATCTTTT+TGG | - | 47697:14846-14865 | MS.gene060464:intron | 25.0% |
| !!! | TCATCATTCTTTTTGTTTTC+TGG | + | 47697:15509-15528 | MS.gene060464:intergenic | 25.0% |
| !!! | TTTTTCTAGAGGAATTGAAT+AGG | - | 47697:15727-15746 | MS.gene060464:intron | 25.0% |
| !!! | TTTTTTGAAGAAGACAATGA+GGG | - | 47697:15662-15681 | MS.gene060464:intron | 25.0% |
| !!! | TTTTTTTGAAGAAGACAATG+AGG | - | 47697:15661-15680 | MS.gene060464:intron | 25.0% |
| AAATCAGGAACCATATTCTT+TGG | - | 47697:15536-15555 | MS.gene060464:intron | 30.0% | |
| AAGTTCCGCTGTAATTAAAT+AGG | - | 47697:15124-15143 | MS.gene060464:intron | 30.0% | |
| AATATTGTTCGCCCATTTAT+TGG | - | 47697:16810-16829 | MS.gene060464:intron | 30.0% | |
| AATTGAAAACCTATGAAGCA+CGG | + | 47697:13776-13795 | MS.gene060464:intergenic | 30.0% | |
| AGTTGGGTAATTAGGAAATA+AGG | - | 47697:16330-16349 | MS.gene060464:intron | 30.0% | |
| ATAAATAACTGCATTCACAG+AGG | + | 47697:16036-16055 | MS.gene060464:intergenic | 30.0% | |
| ATAATGAAATGGCAAATGCT+CGG | + | 47697:14497-14516 | MS.gene060464:intergenic | 30.0% | |
| ATATTGTTCGCCCATTTATT+GGG | - | 47697:16811-16830 | MS.gene060464:intron | 30.0% | |
| ATCAAACAAACATACTCTTG+GGG | + | 47697:16931-16950 | MS.gene060464:intergenic | 30.0% | |
| ATTTAATGGTTGTGAATGTC+TGG | - | 47697:14871-14890 | MS.gene060464:intron | 30.0% | |
| CGCACAATGAAAAATAATAG+TGG | + | 47697:14088-14107 | MS.gene060464:intergenic | 30.0% | |
| CTTTGATGTGAAAAATGAGT+AGG | + | 47697:17217-17236 | MS.gene060464:intergenic | 30.0% | |
| GTGCAATGAACATAAAAGTT+TGG | - | 47697:15159-15178 | MS.gene060464:intron | 30.0% | |
| GTTTCTATCAGGTTTCTATT+TGG | - | 47697:16514-16533 | MS.gene060464:intron | 30.0% | |
| TCATAAAGTTGAAACTGACT+TGG | - | 47697:14792-14811 | MS.gene060464:intron | 30.0% | |
| TTCAGTGTAATCATATGTGT+CGG | + | 47697:13692-13711 | MS.gene060464:intergenic | 30.0% | |
| TTCTCATCAATGTAGTTTCA+GGG | - | 47697:16217-16236 | MS.gene060464:CDS | 30.0% | |
| TTGTGTCATGATCTTTAATG+CGG | - | 47697:13806-13825 | MS.gene060464:CDS | 30.0% | |
| TTTAAACTTCTCTGTCCTTT+CGG | - | 47697:14300-14319 | MS.gene060464:intron | 30.0% | |
| TTTCTCATCAATGTAGTTTC+AGG | - | 47697:16216-16235 | MS.gene060464:CDS | 30.0% | |
| ! | AATACTAGTTGGTTTCTATC+AGG | - | 47697:16503-16522 | MS.gene060464:intron | 30.0% |
| ! | AGCTATAGATACATTTTCAC+CGG | - | 47697:17191-17210 | MS.gene060464:CDS | 30.0% |
| ! | ATGCAGAGGATATTGATTAT+TGG | + | 47697:15198-15217 | MS.gene060464:intergenic | 30.0% |
| ! | CATAGTTGAAAACCTTTTTG+GGG | + | 47697:13623-13642 | MS.gene060464:intergenic | 30.0% |
| ! | CATATTCTTTGGAAGGAAAA+GGG | - | 47697:15547-15566 | MS.gene060464:intron | 30.0% |
| ! | TAGGAATCATTTTGTGAACA+GGG | - | 47697:16460-16479 | MS.gene060464:intron | 30.0% |
| ! | TGCAGAGGATATTGATTATT+GGG | + | 47697:15197-15216 | MS.gene060464:intergenic | 30.0% |
| !! | GCTATTTTCTTTTCATCTTG+AGG | - | 47697:15845-15864 | MS.gene060464:CDS | 30.0% |
| !! | TTTGATTCTGATTTGGTCTT+AGG | - | 47697:14190-14209 | MS.gene060464:intron | 30.0% |
| !!! | AATGACAATGTTTTAGTTGG+TGG | - | 47697:13872-13891 | MS.gene060464:CDS | 30.0% |
| !!! | CTTGTGTTTTGATTCTGATT+TGG | - | 47697:14183-14202 | MS.gene060464:intron | 30.0% |
| !!! | GAGATGTTGTTTTTTTCTAG+AGG | - | 47697:15716-15735 | MS.gene060464:intron | 30.0% |
| AAAATCCTGCAGCATATTTC+TGG | + | 47697:14702-14721 | MS.gene060463:intergenic | 35.0% | |
| AAAATCTGGCTGGAAAATAC+AGG | - | 47697:16689-16708 | MS.gene060464:intron | 35.0% | |
| AAATGCTGAATTAGTTAGGG+TGG | - | 47697:15604-15623 | MS.gene060464:intron | 35.0% | |
| ACACAATAGATCACTCTCTA+AGG | + | 47697:16382-16401 | MS.gene060464:intergenic | 35.0% | |
| GAAACTAGGATAGCCATAAA+GGG | + | 47697:16253-16272 | MS.gene060464:intergenic | 35.0% | |
| GAGAAGTTTAAAAGAACCAG+TGG | + | 47697:14292-14311 | MS.gene060464:intergenic | 35.0% | |
| GAGAATCTGTTGAATACTCT+AGG | - | 47697:16441-16460 | MS.gene060464:intron | 35.0% | |
| GCTTATGACTATTAATCCAC+TGG | - | 47697:14273-14292 | MS.gene060464:intron | 35.0% | |
| GTAAAGCTCTCCCAATAAAT+GGG | + | 47697:16824-16843 | MS.gene060464:intergenic | 35.0% | |
| GTTTCTATCCTAGAAAACGT+TGG | + | 47697:15459-15478 | MS.gene060464:intergenic | 35.0% | |
| TAAATCTATACTGGATGCAG+AGG | + | 47697:15212-15231 | MS.gene060464:intergenic | 35.0% | |
| TAGTACAAAGTGTGGTCAAA+TGG | - | 47697:14111-14130 | MS.gene060464:intron | 35.0% | |
| TATCAGGTTTCTATTTGGAG+AGG | - | 47697:16519-16538 | MS.gene060464:intron | 35.0% | |
| TCTAGATTGCTAAATCTGAC+CGG | - | 47697:17419-17438 | MS.gene060464:intron | 35.0% | |
| TCTCATCAATGTAGTTTCAG+GGG | - | 47697:16218-16237 | MS.gene060464:CDS | 35.0% | |
| TGCCAAAGTTTGCATTTGAT+AGG | - | 47697:15353-15372 | MS.gene060464:intron | 35.0% | |
| TGGAAAATTGCGGATAGATA+TGG | - | 47697:13829-13848 | MS.gene060464:CDS | 35.0% | |
| TGTAAAGCTCTCCCAATAAA+TGG | + | 47697:16825-16844 | MS.gene060464:intergenic | 35.0% | |
| TTGTTACTCAAGTACCACTT+TGG | - | 47697:13507-13526 | MS.gene060464:intron | 35.0% | |
| TTTAATGCGGTGGAAAATTG+CGG | - | 47697:13819-13838 | MS.gene060464:CDS | 35.0% | |
| ! | AATGATGAAGGTCTGAAATC+AGG | - | 47697:15521-15540 | MS.gene060464:intron | 35.0% |
| ! | AGATAAGTTGACAGAAGTGT+TGG | - | 47697:14444-14463 | MS.gene060464:intron | 35.0% |
| ! | CCATATTCTTTGGAAGGAAA+AGG | - | 47697:15546-15565 | MS.gene060464:intron | 35.0% |
| ! | CCTTTTCCTTCCAAAGAATA+TGG | + | 47697:15549-15568 | MS.gene060464:intergenic | 35.0% |
| ! | CTAGGAATCATTTTGTGAAC+AGG | - | 47697:16459-16478 | MS.gene060464:intron | 35.0% |
| ! | CTTTTAGATTGCACTTTGAC+TGG | - | 47697:16145-16164 | MS.gene060464:CDS | 35.0% |
| ! | GACTGGAATTTTACTGTTAG+AGG | - | 47697:16162-16181 | MS.gene060464:CDS | 35.0% |
| ! | GCTTCATAGGTTTTCAATTG+CGG | - | 47697:13777-13796 | MS.gene060464:CDS | 35.0% |
| ! | TCTTGTGGTCTTTTTGCATT+GGG | - | 47697:16413-16432 | MS.gene060464:intron | 35.0% |
| ! | TTCTAGAGGAATTGAATAGG+TGG | - | 47697:15730-15749 | MS.gene060464:intron | 35.0% |
| ! | TTGAATGACCAACGTTTTCT+AGG | - | 47697:15448-15467 | MS.gene060464:intron | 35.0% |
| !! | AAATGATGTACCTTTGAAGC+CGG | + | 47697:17441-17460 | MS.gene060464:intergenic | 35.0% |
| !! | AGCAACATCAGTTTGTTAAG+AGG | - | 47697:16274-16293 | MS.gene060464:intron | 35.0% |
| !! | ATCATTTCCTGAGAAGTACT+TGG | - | 47697:17454-17473 | MS.gene060464:intron | 35.0% |
| !! | CCAAAACACTCTAAAATGGT+GGG | + | 47697:16655-16674 | MS.gene060464:intergenic | 35.0% |
| !! | GTGTCATTTGTATAGTCTTG+TGG | - | 47697:16398-16417 | MS.gene060464:intron | 35.0% |
| !! | TAAAGTTGAAACTGACTTGG+AGG | - | 47697:14795-14814 | MS.gene060464:intron | 35.0% |
| !! | TCATTTCCTGAGAAGTACTT+GGG | - | 47697:17455-17474 | MS.gene060464:intron | 35.0% |
| !!! | AAGGCTCCCTTCTTTTTTAT+AGG | + | 47697:16363-16382 | MS.gene060464:intergenic | 35.0% |
| !!! | AATGTTTTAGTTGGTGGACA+AGG | - | 47697:13878-13897 | MS.gene060464:CDS | 35.0% |
| !!! | AGAGGATCCATTTTGAGATT+AGG | + | 47697:13371-13390 | MS.gene060464:intergenic | 35.0% |
| !!! | GTTTTCTAGGATAGAAACAC+CGG | - | 47697:15461-15480 | MS.gene060464:intron | 35.0% |
| AAACCTATGAAGCACGGATA+CGG | + | 47697:13770-13789 | MS.gene060464:intergenic | 40.0% | |
| AAACTGGAAGAGGTAGCTTT+AGG | - | 47697:14981-15000 | MS.gene060464:intron | 40.0% | |
| AAATAGCGGCTGTAGTATAG+TGG | - | 47697:14050-14069 | MS.gene060464:intron | 40.0% | |
| AACTATCACAGTTCCACTGT+TGG | - | 47697:15784-15803 | MS.gene060464:intron | 40.0% | |
| AACTGATGTTGCTCGAAACT+AGG | + | 47697:16267-16286 | MS.gene060464:intergenic | 40.0% | |
| AATTGAATAGGTGGAACGGT+GGG | - | 47697:15739-15758 | MS.gene060464:intron | 40.0% | |
| ACCTCTTAACTGACAGAAAC+TGG | + | 47697:15379-15398 | MS.gene060464:intergenic | 40.0% | |
| ACTATCACAGTTCCACTGTT+GGG | - | 47697:15785-15804 | MS.gene060464:intron | 40.0% | |
| ACTTTCCAGAAATATGCTGC+AGG | - | 47697:14694-14713 | MS.gene060464:intron | 40.0% | |
| AGACGAGACAATTCAACTAC+AGG | + | 47697:15008-15027 | MS.gene060464:intergenic | 40.0% | |
| AGGACAAGATGACAGGTTAA+GGG | - | 47697:15865-15884 | MS.gene060464:CDS | 40.0% | |
| AGGAGAAAGAGAGATAGACA+AGG | - | 47697:13910-13929 | MS.gene060464:intron | 40.0% | |
| ATATCTCCCAAGTACTTCTC+AGG | + | 47697:17464-17483 | MS.gene060464:intergenic | 40.0% | |
| CAACATTCCTGATGCATACA+TGG | - | 47697:14654-14673 | MS.gene060464:intron | 40.0% | |
| CAATGAGGGTAACATAGATC+TGG | - | 47697:15676-15695 | MS.gene060464:intron | 40.0% | |
| CAGGAACCATATTCTTTGGA+AGG | - | 47697:15540-15559 | MS.gene060464:intron | 40.0% | |
| CATAGAAATACCCATCACTC+CGG | + | 47697:15483-15502 | MS.gene060464:intergenic | 40.0% | |
| CATCGTGCCTAATCTCAAAA+TGG | - | 47697:13361-13380 | MS.gene060464:intron | 40.0% | |
| CGAAACTAGGATAGCCATAA+AGG | + | 47697:16254-16273 | MS.gene060464:intergenic | 40.0% | |
| CTGAAAAGAGTGAGAGTTCA+TGG | + | 47697:13198-13217 | MS.gene060464:intergenic | 40.0% | |
| CTTACAGAGATGAGACAAAG+AGG | + | 47697:13389-13408 | MS.gene060464:intergenic | 40.0% | |
| GAAGGTGAGATCTCTAATTG+AGG | - | 47697:14750-14769 | MS.gene060464:intron | 40.0% | |
| GAGGAATTGAATAGGTGGAA+CGG | - | 47697:15735-15754 | MS.gene060464:intron | 40.0% | |
| GATGTGAAAAATGAGTAGGC+CGG | + | 47697:17213-17232 | MS.gene060464:intergenic | 40.0% | |
| GGAGAAAGAGAGATAGACAA+GGG | - | 47697:13911-13930 | MS.gene060464:intron | 40.0% | |
| GGCCTATCAAATGCAAACTT+TGG | + | 47697:15358-15377 | MS.gene060464:intergenic | 40.0% | |
| GGGGTGAATAATTCCCTTTA+TGG | - | 47697:16237-16256 | MS.gene060464:intron | 40.0% | |
| GGTACTTGAGTAACAATCTG+TGG | + | 47697:13503-13522 | MS.gene060464:intergenic | 40.0% | |
| GTAACAATCTGTGGCGTAAA+TGG | + | 47697:13494-13513 | MS.gene060464:intergenic | 40.0% | |
| GTGCGATTTAGTACAAAGTG+TGG | - | 47697:14103-14122 | MS.gene060464:intron | 40.0% | |
| GTTACTGCTTGTGTTAGACA+AGG | - | 47697:15905-15924 | MS.gene060464:CDS | 40.0% | |
| GTTGTATGTTGCTGTCTAAC+AGG | + | 47697:15767-15786 | MS.gene060464:intergenic | 40.0% | |
| TACTCAAGTACCACTTTGGT+TGG | - | 47697:13511-13530 | MS.gene060464:intron | 40.0% | |
| TAGATATGTAACAGGACGAG+CGG | + | 47697:16715-16734 | MS.gene060464:intergenic | 40.0% | |
| TCCTGCAGAGAAGACTTTAA+AGG | - | 47697:15940-15959 | MS.gene060464:intron | 40.0% | |
| TGTCATGATCTTTAATGCGG+TGG | - | 47697:13809-13828 | MS.gene060464:CDS | 40.0% | |
| TTGAGGACATCAGAGATGTA+AGG | - | 47697:14767-14786 | MS.gene060464:intron | 40.0% | |
| ! | CACGCCAAAACACTCTAAAA+TGG | + | 47697:16659-16678 | MS.gene060464:intergenic | 40.0% |
| ! | GTAATCATATGTGTCGGTGT+CGG | + | 47697:13686-13705 | MS.gene060464:intergenic | 40.0% |
| ! | GTCTTGTGGTCTTTTTGCAT+TGG | - | 47697:16412-16431 | MS.gene060464:intron | 40.0% |
| ! | TAACAATGGCAGGGAGATTT+TGG | - | 47697:13467-13486 | MS.gene060464:intron | 40.0% |
| ! | TGTAGTAGTTTTCATGCAGC+TGG | - | 47697:17334-17353 | MS.gene060464:CDS | 40.0% |
| !! | ACCTTTAAAGTCTTCTCTGC+AGG | + | 47697:15944-15963 | MS.gene060464:intergenic | 40.0% |
| !! | ACTGTTGGGCTTTAAACAGT+GGG | - | 47697:15799-15818 | MS.gene060464:intron | 40.0% |
| !! | GCCAAAACACTCTAAAATGG+TGG | + | 47697:16656-16675 | MS.gene060464:intergenic | 40.0% |
| !!! | CCCACCATTTTAGAGTGTTT+TGG | - | 47697:16652-16671 | MS.gene060464:intron | 40.0% |
| AAACTTCTCTGTCCTTTCGG+TGG | - | 47697:14303-14322 | MS.gene060464:intron | 45.0% | |
| AGAGCAATTGCCAACCAAAG+TGG | + | 47697:13524-13543 | MS.gene060464:intergenic | 45.0% | |
| ATGCCTCTGTGACTAGGTTA+AGG | - | 47697:16118-16137 | MS.gene060464:intron | 45.0% | |
| CAAAGTGTGGTCAAATGGTG+TGG | - | 47697:14116-14135 | MS.gene060464:intron | 45.0% | |
| CAAATGCTCGGACATCTCTT+GGG | + | 47697:14485-14504 | MS.gene060464:intergenic | 45.0% | |
| CAAGCTTGCATTGCAGTTGA+TGG | + | 47697:14017-14036 | MS.gene060464:intergenic | 45.0% | |
| CATCTTGAGGACAAGATGAC+AGG | - | 47697:15858-15877 | MS.gene060464:CDS | 45.0% | |
| CCTGGGAAAATGATCTCAAG+AGG | - | 47697:15823-15842 | MS.gene060464:intron | 45.0% | |
| CTTACCAACAGTCATCCACT+GGG | + | 47697:13579-13598 | MS.gene060464:intergenic | 45.0% | |
| GAACTCACCATGTATGCATC+AGG | + | 47697:14664-14683 | MS.gene060464:intergenic | 45.0% | |
| GAATTGAATAGGTGGAACGG+TGG | - | 47697:15738-15757 | MS.gene060464:intron | 45.0% | |
| GACAAGATGACAGGTTAAGG+GGG | - | 47697:15867-15886 | MS.gene060464:CDS | 45.0% | |
| GAGGACAAGATGACAGGTTA+AGG | - | 47697:15864-15883 | MS.gene060464:CDS | 45.0% | |
| GATAGAAACACCGGAGTGAT+GGG | - | 47697:15470-15489 | MS.gene060464:intron | 45.0% | |
| GCCAGTTTCTGTCAGTTAAG+AGG | - | 47697:15375-15394 | MS.gene060464:intron | 45.0% | |
| GGACAAGATGACAGGTTAAG+GGG | - | 47697:15866-15885 | MS.gene060464:CDS | 45.0% | |
| GGTGGACAAGGTGAGAATAA+AGG | - | 47697:13890-13909 | MS.gene060464:intron | 45.0% | |
| TCAACTGCAATGCAAGCTTG+TGG | - | 47697:14017-14036 | MS.gene060464:intron | 45.0% | |
| TGCTGAATTAGTTAGGGTGG+AGG | - | 47697:15607-15626 | MS.gene060464:intron | 45.0% | |
| TTACCAACAGTCATCCACTG+GGG | + | 47697:13578-13597 | MS.gene060464:intergenic | 45.0% | |
| TTTGGTTGGCAATTGCTCTC+AGG | - | 47697:13525-13544 | MS.gene060464:intron | 45.0% | |
| ! | ACTCTCACTCTTTTCAGCAG+AGG | - | 47697:13201-13220 | MS.gene060464:CDS | 45.0% |
| ! | CACTGTTTAAAGCCCAACAG+TGG | + | 47697:15800-15819 | MS.gene060464:intergenic | 45.0% |
| ! | CCTCTTGAGATCATTTTCCC+AGG | + | 47697:15826-15845 | MS.gene060464:intergenic | 45.0% |
| ! | CTAAATCTGACCGGCTTCAA+AGG | - | 47697:17428-17447 | MS.gene060464:intron | 45.0% |
| ! | GCAGAGGAGGTATGTATGTA+TGG | - | 47697:13217-13236 | MS.gene060464:CDS | 45.0% |
| ! | TTAGCTTGAGTTCATCGCTG+AGG | - | 47697:13325-13344 | MS.gene060464:intron | 45.0% |
| !! | AACATACTCTTGGGGCATTG+TGG | + | 47697:16923-16942 | MS.gene060464:intergenic | 45.0% |
| !! | ACATACTCTTGGGGCATTGT+GGG | + | 47697:16922-16941 | MS.gene060464:intergenic | 45.0% |
| !! | CACTGTTGGGCTTTAAACAG+TGG | - | 47697:15798-15817 | MS.gene060464:intron | 45.0% |
| !! | GCTGGTATTTGCTTTTGCAG+AGG | - | 47697:17352-17371 | MS.gene060464:intron | 45.0% |
| !! | TGGTCGTACATTTGCTGTGA+AGG | - | 47697:14825-14844 | MS.gene060464:intron | 45.0% |
| !!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | 47697:16662-16681 | MS.gene060464:intron | 45.0% |
| CAGAGCGAGTTTCGGATAGA+CGG | - | 47697:16886-16905 | MS.gene060464:intron | 50.0% | |
| CTGCCTTAACCTAGTCACAG+AGG | + | 47697:16124-16143 | MS.gene060464:intergenic | 50.0% | |
| CTGTGAATGCCTCTGTGACT+AGG | - | 47697:16112-16131 | MS.gene060464:intron | 50.0% | |
| GCAAATGCTCGGACATCTCT+TGG | + | 47697:14486-14505 | MS.gene060464:intergenic | 50.0% | |
| GCAATTGCTCTCAGGAAGAG+AGG | - | 47697:13533-13552 | MS.gene060464:intron | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | - | 47697:13645-13664 | MS.gene060464:intron | 50.0% | |
| GCTTACCAACAGTCATCCAC+TGG | + | 47697:13580-13599 | MS.gene060464:intergenic | 50.0% | |
| GGATAGAAACACCGGAGTGA+TGG | - | 47697:15469-15488 | MS.gene060464:intron | 50.0% | |
| GTCTATCCGAAACTCGCTCT+GGG | + | 47697:16887-16906 | MS.gene060464:intergenic | 50.0% | |
| TGAAGCACGGATACGGACAT+CGG | + | 47697:13763-13782 | MS.gene060464:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | 47697:13764-13783 | MS.gene060464:CDS | 50.0% | |
| ! | CTCACTCTTTTCAGCAGAGG+AGG | - | 47697:13204-13223 | MS.gene060464:CDS | 50.0% |
| !! | ACTGACTTGGAGGCATTCGA+TGG | - | 47697:14805-14824 | MS.gene060464:intron | 50.0% |
| !! | AGTCACAGAGGCATTCACAG+AGG | + | 47697:16112-16131 | MS.gene060464:intergenic | 50.0% |
| !! | GGCTTTAAACAGTGGGACCT+GGG | - | 47697:15806-15825 | MS.gene060464:intron | 50.0% |
| !!! | AGAGTGTTTTGGCGTGTGAC+GGG | - | 47697:16663-16682 | MS.gene060464:intron | 50.0% |
| CAACAGTCATCCACTGGGGA+GGG | + | 47697:13574-13593 | MS.gene060464:intergenic | 55.0% | |
| CGTCTATCCGAAACTCGCTC+TGG | + | 47697:16888-16907 | MS.gene060464:intergenic | 55.0% | |
| CTCAGACCCAGAGCGAGTTT+CGG | - | 47697:16878-16897 | MS.gene060464:intron | 55.0% | |
| TACGGACATCGGACACCACA+CGG | + | 47697:13752-13771 | MS.gene060464:intergenic | 55.0% | |
| TCCACATGTCGACCACCGAA+AGG | + | 47697:14318-14337 | MS.gene060464:intergenic | 55.0% | |
| TCCTCAGATTAGGCGAGTCG+TGG | - | 47697:13655-13674 | MS.gene060464:intron | 55.0% | |
| TCCTTTCGGTGGTCGACATG+TGG | - | 47697:14314-14333 | MS.gene060464:intron | 55.0% | |
| TGACGGGGTGAAAATCTGGC+TGG | - | 47697:16679-16698 | MS.gene060464:intron | 55.0% | |
| ! | CGTGTGACGGGGTGAAAATC+TGG | - | 47697:16675-16694 | MS.gene060464:intron | 55.0% |
| !! | GGGCTTTAAACAGTGGGACC+TGG | - | 47697:15805-15824 | MS.gene060464:intron | 55.0% |
| !!! | GAGTGTTTTGGCGTGTGACG+GGG | - | 47697:16664-16683 | MS.gene060464:intron | 55.0% |
| ATCGGACACCACACGGACAC+TGG | + | 47697:13745-13764 | MS.gene060464:intergenic | 60.0% | |
| CATCCACTGGGGAGGGACAA+TGG | + | 47697:13567-13586 | MS.gene060464:intergenic | 60.0% | |
| CCAACAGTCATCCACTGGGG+AGG | + | 47697:13575-13594 | MS.gene060464:intergenic | 60.0% | |
| CCTCCCCAGTGGATGACTGT+TGG | - | 47697:13572-13591 | MS.gene060464:intron | 60.0% | |
| GCCACGACTCGCCTAATCTG+AGG | + | 47697:13659-13678 | MS.gene060464:intergenic | 60.0% | |
| !! | GGGGCATTGTGGGCAACTTG+TGG | + | 47697:16912-16931 | MS.gene060464:intergenic | 60.0% |
| GCTCCATTGTCCCTCCCCAG+TGG | - | 47697:13561-13580 | MS.gene060464:intron | 65.0% | |
| ! | TAGCGGTGCCAGTGTCCGTG+TGG | - | 47697:13734-13753 | MS.gene060464:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 47697 | gene | 13178 | 17511 | 13178 | ID=MS.gene060464 |
| 47697 | mRNA | 13178 | 17511 | 13178 | ID=MS.gene060464.t1;Parent=MS.gene060464 |
| 47697 | exon | 17464 | 17511 | 17464 | ID=MS.gene060464.t1.exon1;Parent=MS.gene060464.t1 |
| 47697 | CDS | 17464 | 17511 | 17464 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 17286 | 17360 | 17286 | ID=MS.gene060464.t1.exon2;Parent=MS.gene060464.t1 |
| 47697 | CDS | 17286 | 17360 | 17286 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 17096 | 17210 | 17096 | ID=MS.gene060464.t1.exon3;Parent=MS.gene060464.t1 |
| 47697 | CDS | 17096 | 17210 | 17096 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 16144 | 16243 | 16144 | ID=MS.gene060464.t1.exon4;Parent=MS.gene060464.t1 |
| 47697 | CDS | 16144 | 16243 | 16144 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 16014 | 16044 | 16014 | ID=MS.gene060464.t1.exon5;Parent=MS.gene060464.t1 |
| 47697 | CDS | 16014 | 16044 | 16014 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 15843 | 15935 | 15843 | ID=MS.gene060464.t1.exon6;Parent=MS.gene060464.t1 |
| 47697 | CDS | 15843 | 15935 | 15843 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 13754 | 13906 | 13754 | ID=MS.gene060464.t1.exon7;Parent=MS.gene060464.t1 |
| 47697 | CDS | 13754 | 13906 | 13754 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| 47697 | exon | 13178 | 13336 | 13178 | ID=MS.gene060464.t1.exon8;Parent=MS.gene060464.t1 |
| 47697 | CDS | 13178 | 13336 | 13178 | ID=cds.MS.gene060464.t1;Parent=MS.gene060464.t1 |
| Gene Sequence |
| Protein sequence |
