Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060466.t1 | XP_013448036.1 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 7.00E-111 | 410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060466.t1 | Q9C7A8 | 63.9 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 1.3e-70 | 267.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060466.t1 | I3SFH0 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 5.0e-111 | 410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060464 | MS.gene060466 | 0.956914 | 9.54E-115 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060466 | MS.gene066551 | PPI |
| MS.gene060466 | MS.gene062116 | PPI |
| MS.gene060466 | MS.gene85342 | PPI |
| MS.gene060466 | MS.gene070139 | PPI |
| MS.gene060466 | MS.gene071261 | PPI |
| MS.gene066552 | MS.gene060466 | PPI |
| MS.gene060466 | MS.gene045765 | PPI |
| MS.gene060466 | MS.gene78156 | PPI |
| MS.gene060466 | MS.gene025347 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060466.t1 | MTR_7g029455 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 6.47e-151 | 419 |
| MS.gene060466.t1 | MTR_7g029455 | 95.735 | 211 | 3 | 1 | 1 | 205 | 1 | 211 | 1.97e-148 | 413 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060466.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 9.23e-93 | 272 |
| MS.gene060466.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 9.23e-93 | 272 |
| MS.gene060466.t1 | AT3G12530 | 64.516 | 186 | 65 | 1 | 20 | 205 | 1 | 185 | 4.89e-84 | 249 |
| MS.gene060466.t1 | AT3G12530 | 67.123 | 146 | 48 | 0 | 1 | 146 | 1 | 146 | 8.05e-71 | 214 |
Find 0 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATGTTTTAAATAAAG+TGG | - | 47698:6558-6577 | MS.gene060466:intron | 10.0% |
| !!! | ATTTGAAGTTTATATATATA+AGG | - | 47698:4903-4922 | MS.gene060466:intron | 10.0% |
| !!! | TTAAAACATTTTATTATGTT+GGG | + | 47698:6552-6571 | MS.gene060466:intergenic | 10.0% |
| !!! | TTTAAAACATTTTATTATGT+TGG | + | 47698:6553-6572 | MS.gene060466:intergenic | 10.0% |
| !! | TAATAATAATCTCAAACAAT+GGG | + | 47698:3271-3290 | MS.gene060466:intergenic | 15.0% |
| !! | TGTAAATATGTATCTAAAAA+AGG | + | 47698:3435-3454 | MS.gene060466:intergenic | 15.0% |
| !! | TTAATAATAATCTCAAACAA+TGG | + | 47698:3272-3291 | MS.gene060466:intergenic | 15.0% |
| !! | TTACAATATATTCATAACAA+TGG | - | 47698:3450-3469 | MS.gene060466:intron | 15.0% |
| !!! | GAACTTTCTTTAAAATAATT+TGG | + | 47698:5045-5064 | MS.gene060466:intergenic | 15.0% |
| !! | AAAAAAATGCTGAATTAGTT+AGG | - | 47698:5597-5616 | MS.gene060466:intron | 20.0% |
| !! | AAAAAATGCTGAATTAGTTA+GGG | - | 47698:5598-5617 | MS.gene060466:intron | 20.0% |
| !! | AAAAATAACATCAAAGTTGA+TGG | + | 47698:3971-3990 | MS.gene060466:intergenic | 20.0% |
| !! | AAAATGAAATGTTTACACAA+AGG | + | 47698:6195-6214 | MS.gene060466:intergenic | 20.0% |
| !! | ACAATTTACATCATAATTCT+TGG | - | 47698:6746-6765 | MS.gene060466:intron | 20.0% |
| !! | ACTAGTATTATCAAGAAATT+AGG | + | 47698:6488-6507 | MS.gene060466:intergenic | 20.0% |
| !! | CTAGTATTATCAAGAAATTA+GGG | + | 47698:6487-6506 | MS.gene060466:intergenic | 20.0% |
| !! | GAAATTTCTACATAATGAAA+TGG | + | 47698:4505-4524 | MS.gene060466:intergenic | 20.0% |
| !! | GATTAAAAATTTATCTGCAA+TGG | - | 47698:6778-6797 | MS.gene060466:intron | 20.0% |
| !! | TGTTATTGTTAAAGTTAGTT+GGG | - | 47698:6311-6330 | MS.gene060466:intron | 20.0% |
| !! | TTATCAAATGCAAAAAATAG+CGG | + | 47698:4154-4173 | MS.gene060466:intergenic | 20.0% |
| !! | TTCTAAATCTAAATCTATAC+TGG | + | 47698:5218-5237 | MS.gene060466:intergenic | 20.0% |
| !! | TTTAAATAAAGTGGACATAT+GGG | - | 47698:6567-6586 | MS.gene060466:intron | 20.0% |
| !!! | AATTTCTTGATAATACTAGT+TGG | - | 47698:6488-6507 | MS.gene060466:intron | 20.0% |
| !!! | ATGGATGATAATTTTCAAAT+TGG | - | 47698:3233-3252 | MS.gene060466:CDS | 20.0% |
| !!! | CGATTTTCTTTAATTATTAG+CGG | - | 47698:3714-3733 | MS.gene060466:intron | 20.0% |
| !!! | GAATCTTTTTGGTAATTTAA+TGG | - | 47698:4854-4873 | MS.gene060466:intron | 20.0% |
| !!! | GTATAGTTTTATTCATGTTA+GGG | - | 47698:6057-6076 | MS.gene060466:intron | 20.0% |
| !!! | TCATATTTTTCAAAACTTAC+TGG | + | 47698:4543-4562 | MS.gene060466:intergenic | 20.0% |
| !!! | TGTATAGTTTTATTCATGTT+AGG | - | 47698:6056-6075 | MS.gene060466:intron | 20.0% |
| !!! | TTGCATTTAAAATTTCAAAC+TGG | - | 47698:4962-4981 | MS.gene060466:intron | 20.0% |
| !!! | TTGTTATTGTTAAAGTTAGT+TGG | - | 47698:6310-6329 | MS.gene060466:intron | 20.0% |
| !!! | TTGTTGGTTTAAATAATAAC+AGG | - | 47698:4376-4395 | MS.gene060466:intron | 20.0% |
| !!! | TTTTAAATAAAGTGGACATA+TGG | - | 47698:6566-6585 | MS.gene060466:intron | 20.0% |
| ! | AAAAGGGAAAATATCAACAT+AGG | - | 47698:5972-5991 | MS.gene060466:intron | 25.0% |
| ! | AAAGGGAAAATATCAACATA+GGG | - | 47698:5973-5992 | MS.gene060466:intron | 25.0% |
| ! | AAAGGTCTATTATAGAGAAA+AGG | - | 47698:5955-5974 | MS.gene060466:intron | 25.0% |
| ! | AAGGTCTATTATAGAGAAAA+GGG | - | 47698:5956-5975 | MS.gene060466:intron | 25.0% |
| ! | AATATATTCATAACAATGGC+AGG | - | 47698:3454-3473 | MS.gene060466:intron | 25.0% |
| ! | ACATTGTCATTGTTAGATTA+CGG | + | 47698:3860-3879 | MS.gene060466:intergenic | 25.0% |
| ! | AGGGTTTAATGTTGTATTTA+AGG | - | 47698:5992-6011 | MS.gene060466:intron | 25.0% |
| ! | ATATATTCATAACAATGGCA+GGG | - | 47698:3455-3474 | MS.gene060466:intron | 25.0% |
| ! | ATATCAAACAAACATACTCT+TGG | + | 47698:6929-6948 | MS.gene060466:intergenic | 25.0% |
| ! | ATGCATCTCTTTCATATATT+AGG | - | 47698:5250-5269 | MS.gene060466:intron | 25.0% |
| ! | ATTAAATAGGAGAAAACAAG+AGG | - | 47698:5134-5153 | MS.gene060466:intron | 25.0% |
| ! | CTAGTCACAAACAAATATTA+TGG | + | 47698:4423-4442 | MS.gene060466:intergenic | 25.0% |
| ! | GAAAACAAAAAGAATGATGA+AGG | - | 47698:5506-5525 | MS.gene060466:intron | 25.0% |
| ! | GAAATGAATAGATATGTAAC+AGG | + | 47698:6719-6738 | MS.gene060466:intergenic | 25.0% |
| ! | GTACATAGCAAATAAGTAAA+TGG | + | 47698:6989-7008 | MS.gene060466:intergenic | 25.0% |
| ! | GTGGCATTATTATTAAATAG+CGG | - | 47698:4033-4052 | MS.gene060466:intron | 25.0% |
| ! | GTTATTGTTAGTTAGAGTTA+TGG | - | 47698:5413-5432 | MS.gene060466:intron | 25.0% |
| ! | TAAACCAACAAATTCTAAAC+TGG | + | 47698:4367-4386 | MS.gene060466:intergenic | 25.0% |
| ! | TATCAAACAAACATACTCTT+GGG | + | 47698:6928-6947 | MS.gene060466:intergenic | 25.0% |
| ! | TATGTTGCCTATAAAAAGAA+GGG | - | 47698:6350-6369 | MS.gene060466:intron | 25.0% |
| ! | TGATGTAAGTCAAAAATGTT+TGG | - | 47698:7264-7283 | MS.gene060466:intron | 25.0% |
| ! | TTAAAATTTCAAACTGGAAG+AGG | - | 47698:4968-4987 | MS.gene060466:intron | 25.0% |
| ! | TTAAAGTTAGTTGGGTAATT+AGG | - | 47698:6319-6338 | MS.gene060466:intron | 25.0% |
| ! | TTTAGAGATAAATTGTCTTG+AGG | + | 47698:5297-5316 | MS.gene060466:intergenic | 25.0% |
| ! | TTTATGCTTGGATATTGAAT+TGG | - | 47698:6613-6632 | MS.gene060466:intron | 25.0% |
| ! | TTTCTCCTATTTAATTACAG+CGG | + | 47698:5129-5148 | MS.gene060466:intergenic | 25.0% |
| !! | ATGGTTAATTTTGTTAGTAC+AGG | + | 47698:6970-6989 | MS.gene060466:intergenic | 25.0% |
| !! | TATTCCAGTTTAGAATTTGT+TGG | - | 47698:4360-4379 | MS.gene060466:intron | 25.0% |
| !! | TATTTCTTTTATCCCCAAAA+AGG | - | 47698:3605-3624 | MS.gene060466:intron | 25.0% |
| !! | TCATAGTTGAAAACCTTTTT+GGG | + | 47698:3621-3640 | MS.gene060466:intergenic | 25.0% |
| !! | TTAGTTTATTTCTCTTGTGA+AGG | - | 47698:4729-4748 | MS.gene060466:intron | 25.0% |
| !! | TTCATAGTTGAAAACCTTTT+TGG | + | 47698:3622-3641 | MS.gene060466:intergenic | 25.0% |
| !!! | AACAATGACAATGTTTTAGT+TGG | - | 47698:3866-3885 | MS.gene060466:CDS | 25.0% |
| !!! | CTTACACTTTTTTTTATGCT+TGG | - | 47698:6601-6620 | MS.gene060466:intron | 25.0% |
| !!! | CTTTAAAATAATTTGGTAGC+AGG | + | 47698:5038-5057 | MS.gene060466:intergenic | 25.0% |
| !!! | GGTAATTTTTCGAATCTTTT+TGG | - | 47698:4843-4862 | MS.gene060466:intron | 25.0% |
| !!! | TCATCATTCTTTTTGTTTTC+TGG | + | 47698:5506-5525 | MS.gene060466:intergenic | 25.0% |
| !!! | TTTTTCTAGAGGAATTGAAT+AGG | - | 47698:5724-5743 | MS.gene060466:intron | 25.0% |
| !!! | TTTTTTGAAGAAGACAATGA+GGG | - | 47698:5659-5678 | MS.gene060466:intron | 25.0% |
| !!! | TTTTTTTGAAGAAGACAATG+AGG | - | 47698:5658-5677 | MS.gene060466:intron | 25.0% |
| AAATCAGGAACCATATTCTT+TGG | - | 47698:5533-5552 | MS.gene060466:intron | 30.0% | |
| AAGTTCCGCTGTAATTAAAT+AGG | - | 47698:5121-5140 | MS.gene060466:intron | 30.0% | |
| AATATTGTTCGCCCATTTAT+TGG | - | 47698:6806-6825 | MS.gene060466:intron | 30.0% | |
| AATTGAAAACCTATGAAGCA+CGG | + | 47698:3773-3792 | MS.gene060466:intergenic | 30.0% | |
| AGTTGGGTAATTAGGAAATA+AGG | - | 47698:6327-6346 | MS.gene060466:intron | 30.0% | |
| ATAAATAACTGCATTCACAG+AGG | + | 47698:6033-6052 | MS.gene060466:intergenic | 30.0% | |
| ATAATGAAATGGCAAATGCT+CGG | + | 47698:4494-4513 | MS.gene060466:intergenic | 30.0% | |
| ATATTGTTCGCCCATTTATT+GGG | - | 47698:6807-6826 | MS.gene060466:intron | 30.0% | |
| ATCAAACAAACATACTCTTG+GGG | + | 47698:6927-6946 | MS.gene060466:intergenic | 30.0% | |
| ATTTAATGGTTGTGAATGTC+TGG | - | 47698:4868-4887 | MS.gene060466:intron | 30.0% | |
| CGCACAATGAAAAATAATAG+TGG | + | 47698:4085-4104 | MS.gene060466:intergenic | 30.0% | |
| CTTTGATGTGAAAAATGAGT+AGG | + | 47698:7213-7232 | MS.gene060466:intergenic | 30.0% | |
| GTATGTTGCCTATAAAAAGA+AGG | - | 47698:6349-6368 | MS.gene060466:intron | 30.0% | |
| GTGCAATGAACATAAAAGTT+TGG | - | 47698:5156-5175 | MS.gene060466:intron | 30.0% | |
| GTTTCTATCAGGTTTCTATT+TGG | - | 47698:6510-6529 | MS.gene060466:intron | 30.0% | |
| TCATAAAGTTGAAACTGACT+TGG | - | 47698:4789-4808 | MS.gene060466:intron | 30.0% | |
| TTCAGTGTAATCATATGTGT+CGG | + | 47698:3689-3708 | MS.gene060466:intergenic | 30.0% | |
| TTCTCATCAATGTAGTTTCA+GGG | - | 47698:6214-6233 | MS.gene060466:CDS | 30.0% | |
| TTGTGTCATGATCTTTAATG+CGG | - | 47698:3803-3822 | MS.gene060466:CDS | 30.0% | |
| TTTAAACTTCTCTGTCCTTT+CGG | - | 47698:4297-4316 | MS.gene060466:intron | 30.0% | |
| TTTCTCATCAATGTAGTTTC+AGG | - | 47698:6213-6232 | MS.gene060466:CDS | 30.0% | |
| ! | AATACTAGTTGGTTTCTATC+AGG | - | 47698:6499-6518 | MS.gene060466:intron | 30.0% |
| ! | AGCTATAGATACATTTTCAC+CGG | - | 47698:7187-7206 | MS.gene060466:CDS | 30.0% |
| ! | ATGCAGAGGATATTGATTAT+TGG | + | 47698:5195-5214 | MS.gene060466:intergenic | 30.0% |
| ! | CATAGTTGAAAACCTTTTTG+GGG | + | 47698:3620-3639 | MS.gene060466:intergenic | 30.0% |
| ! | CATATTCTTTGGAAGGAAAA+GGG | - | 47698:5544-5563 | MS.gene060466:intron | 30.0% |
| ! | TAGGAATCATTTTGTGAACA+GGG | - | 47698:6456-6475 | MS.gene060466:intron | 30.0% |
| ! | TGCAGAGGATATTGATTATT+GGG | + | 47698:5194-5213 | MS.gene060466:intergenic | 30.0% |
| !! | GCTATTTTCTTTTCATCTTG+AGG | - | 47698:5842-5861 | MS.gene060466:CDS | 30.0% |
| !! | TTTGATTCTGATTTGGTCTT+AGG | - | 47698:4187-4206 | MS.gene060466:intron | 30.0% |
| !!! | AATGACAATGTTTTAGTTGG+TGG | - | 47698:3869-3888 | MS.gene060466:CDS | 30.0% |
| !!! | CTTGTGTTTTGATTCTGATT+TGG | - | 47698:4180-4199 | MS.gene060466:intron | 30.0% |
| !!! | GAGATGTTGTTTTTTTCTAG+AGG | - | 47698:5713-5732 | MS.gene060466:intron | 30.0% |
| AAAATCCTGCAGCATATTTC+TGG | + | 47698:4699-4718 | MS.gene060465:intergenic | 35.0% | |
| AAAATCTGGCTGGAAAATAC+AGG | - | 47698:6685-6704 | MS.gene060466:intron | 35.0% | |
| AAATGCTGAATTAGTTAGGG+TGG | - | 47698:5601-5620 | MS.gene060466:intron | 35.0% | |
| ACACAATAGATCACTCTCTA+AGG | + | 47698:6378-6397 | MS.gene060466:intergenic | 35.0% | |
| GAAACTAGGATAGCCATAAA+GGG | + | 47698:6250-6269 | MS.gene060466:intergenic | 35.0% | |
| GAGAAGTTTAAAAGAACCAG+TGG | + | 47698:4289-4308 | MS.gene060466:intergenic | 35.0% | |
| GAGAATCTGTTGAATACTCT+AGG | - | 47698:6437-6456 | MS.gene060466:intron | 35.0% | |
| GCTTATGACTATTAATCCAC+TGG | - | 47698:4270-4289 | MS.gene060466:intron | 35.0% | |
| GTAAAGCTCTCCCAATAAAT+GGG | + | 47698:6820-6839 | MS.gene060466:intergenic | 35.0% | |
| GTTTCTATCCTAGAAAACGT+TGG | + | 47698:5456-5475 | MS.gene060466:intergenic | 35.0% | |
| TAAATCTATACTGGATGCAG+AGG | + | 47698:5209-5228 | MS.gene060466:intergenic | 35.0% | |
| TAGTACAAAGTGTGGTCAAA+TGG | - | 47698:4108-4127 | MS.gene060466:intron | 35.0% | |
| TATCAGGTTTCTATTTGGAG+AGG | - | 47698:6515-6534 | MS.gene060466:intron | 35.0% | |
| TCTAGATTGCTAAATCTGAC+CGG | - | 47698:7415-7434 | MS.gene060466:intron | 35.0% | |
| TCTCATCAATGTAGTTTCAG+GGG | - | 47698:6215-6234 | MS.gene060466:CDS | 35.0% | |
| TGCCAAAGTTTGCATTTGAT+AGG | - | 47698:5350-5369 | MS.gene060466:intron | 35.0% | |
| TGGAAAATTGCGGATAGATA+TGG | - | 47698:3826-3845 | MS.gene060466:CDS | 35.0% | |
| TGTAAAGCTCTCCCAATAAA+TGG | + | 47698:6821-6840 | MS.gene060466:intergenic | 35.0% | |
| TTGTTACTCAAGTACCACTT+TGG | - | 47698:3504-3523 | MS.gene060466:intron | 35.0% | |
| TTTAATGCGGTGGAAAATTG+CGG | - | 47698:3816-3835 | MS.gene060466:CDS | 35.0% | |
| ! | AATGATGAAGGTCTGAAATC+AGG | - | 47698:5518-5537 | MS.gene060466:intron | 35.0% |
| ! | AGATAAGTTGACAGAAGTGT+TGG | - | 47698:4441-4460 | MS.gene060466:intron | 35.0% |
| ! | CCATATTCTTTGGAAGGAAA+AGG | - | 47698:5543-5562 | MS.gene060466:intron | 35.0% |
| ! | CCTTTTCCTTCCAAAGAATA+TGG | + | 47698:5546-5565 | MS.gene060466:intergenic | 35.0% |
| ! | CTAGGAATCATTTTGTGAAC+AGG | - | 47698:6455-6474 | MS.gene060466:intron | 35.0% |
| ! | CTTTTAGATTGCACTTTGAC+TGG | - | 47698:6142-6161 | MS.gene060466:CDS | 35.0% |
| ! | GACTGGAATTTTACTGTTAG+AGG | - | 47698:6159-6178 | MS.gene060466:CDS | 35.0% |
| ! | GCTTCATAGGTTTTCAATTG+CGG | - | 47698:3774-3793 | MS.gene060466:CDS | 35.0% |
| ! | TAAGGCTCCCTTCTTTTTAT+AGG | + | 47698:6360-6379 | MS.gene060466:intergenic | 35.0% |
| ! | TCTTGTGGTCTTTTTGCATT+GGG | - | 47698:6409-6428 | MS.gene060466:intron | 35.0% |
| ! | TTCTAGAGGAATTGAATAGG+TGG | - | 47698:5727-5746 | MS.gene060466:intron | 35.0% |
| ! | TTGAATGACCAACGTTTTCT+AGG | - | 47698:5445-5464 | MS.gene060466:intron | 35.0% |
| !! | AAATGATGTACCTTTGAAGC+CGG | + | 47698:7437-7456 | MS.gene060466:intergenic | 35.0% |
| !! | AGCAACATCAGTTTGTTAAG+AGG | - | 47698:6271-6290 | MS.gene060466:intron | 35.0% |
| !! | ATCATTTCCTGAGAAGTACT+TGG | - | 47698:7450-7469 | MS.gene060466:intron | 35.0% |
| !! | CCAAAACACTCTAAAATGGT+GGG | + | 47698:6651-6670 | MS.gene060466:intergenic | 35.0% |
| !! | GTGTCATTTGTATAGTCTTG+TGG | - | 47698:6394-6413 | MS.gene060466:intron | 35.0% |
| !! | TAAAGTTGAAACTGACTTGG+AGG | - | 47698:4792-4811 | MS.gene060466:intron | 35.0% |
| !! | TCATTTCCTGAGAAGTACTT+GGG | - | 47698:7451-7470 | MS.gene060466:intron | 35.0% |
| !!! | AATGTTTTAGTTGGTGGACA+AGG | - | 47698:3875-3894 | MS.gene060466:CDS | 35.0% |
| !!! | AGAGGATCCATTTTGAGATT+AGG | + | 47698:3368-3387 | MS.gene060466:intergenic | 35.0% |
| !!! | GTTTTCTAGGATAGAAACAC+CGG | - | 47698:5458-5477 | MS.gene060466:intron | 35.0% |
| AAACCTATGAAGCACGGATA+CGG | + | 47698:3767-3786 | MS.gene060466:intergenic | 40.0% | |
| AAACTGGAAGAGGTAGCTTT+AGG | - | 47698:4978-4997 | MS.gene060466:intron | 40.0% | |
| AAATAGCGGCTGTAGTATAG+TGG | - | 47698:4047-4066 | MS.gene060466:intron | 40.0% | |
| AACTATCACAGTTCCACTGT+TGG | - | 47698:5781-5800 | MS.gene060466:intron | 40.0% | |
| AACTGATGTTGCTCGAAACT+AGG | + | 47698:6264-6283 | MS.gene060466:intergenic | 40.0% | |
| AATTGAATAGGTGGAACGGT+GGG | - | 47698:5736-5755 | MS.gene060466:intron | 40.0% | |
| ACCTCTTAACTGACAGAAAC+TGG | + | 47698:5376-5395 | MS.gene060466:intergenic | 40.0% | |
| ACTATCACAGTTCCACTGTT+GGG | - | 47698:5782-5801 | MS.gene060466:intron | 40.0% | |
| ACTTTCCAGAAATATGCTGC+AGG | - | 47698:4691-4710 | MS.gene060466:intron | 40.0% | |
| AGACGAGACAATTCAACTAC+AGG | + | 47698:5005-5024 | MS.gene060466:intergenic | 40.0% | |
| AGGACAAGATGACAGGTTAA+GGG | - | 47698:5862-5881 | MS.gene060466:CDS | 40.0% | |
| AGGAGAAAGAGAGATAGACA+AGG | - | 47698:3907-3926 | MS.gene060466:intron | 40.0% | |
| ATATCTCCCAAGTACTTCTC+AGG | + | 47698:7460-7479 | MS.gene060466:intergenic | 40.0% | |
| CAACATTCCTGATGCATACA+TGG | - | 47698:4651-4670 | MS.gene060466:intron | 40.0% | |
| CAATGAGGGTAACATAGATC+TGG | - | 47698:5673-5692 | MS.gene060466:intron | 40.0% | |
| CAGGAACCATATTCTTTGGA+AGG | - | 47698:5537-5556 | MS.gene060466:intron | 40.0% | |
| CATAGAAATACCCATCACTC+CGG | + | 47698:5480-5499 | MS.gene060466:intergenic | 40.0% | |
| CATCGTGCCTAATCTCAAAA+TGG | - | 47698:3358-3377 | MS.gene060466:intron | 40.0% | |
| CGAAACTAGGATAGCCATAA+AGG | + | 47698:6251-6270 | MS.gene060466:intergenic | 40.0% | |
| CTGAAAAGAGTGAGAGTTCA+TGG | + | 47698:3195-3214 | MS.gene060466:intergenic | 40.0% | |
| CTTACAGAGATGAGACAAAG+AGG | + | 47698:3386-3405 | MS.gene060466:intergenic | 40.0% | |
| GAAGGTGAGATCTCTAATTG+AGG | - | 47698:4747-4766 | MS.gene060466:intron | 40.0% | |
| GAGGAATTGAATAGGTGGAA+CGG | - | 47698:5732-5751 | MS.gene060466:intron | 40.0% | |
| GATGTGAAAAATGAGTAGGC+CGG | + | 47698:7209-7228 | MS.gene060466:intergenic | 40.0% | |
| GGAGAAAGAGAGATAGACAA+GGG | - | 47698:3908-3927 | MS.gene060466:intron | 40.0% | |
| GGCCTATCAAATGCAAACTT+TGG | + | 47698:5355-5374 | MS.gene060466:intergenic | 40.0% | |
| GGGGTGAATAATTCCCTTTA+TGG | - | 47698:6234-6253 | MS.gene060466:intron | 40.0% | |
| GGTACTTGAGTAACAATCTG+TGG | + | 47698:3500-3519 | MS.gene060466:intergenic | 40.0% | |
| GTAACAATCTGTGGCGTAAA+TGG | + | 47698:3491-3510 | MS.gene060466:intergenic | 40.0% | |
| GTGCGATTTAGTACAAAGTG+TGG | - | 47698:4100-4119 | MS.gene060466:intron | 40.0% | |
| GTTACTGCTTGTGTTAGACA+AGG | - | 47698:5902-5921 | MS.gene060466:CDS | 40.0% | |
| GTTGTATGTTGCTGTCTAAC+AGG | + | 47698:5764-5783 | MS.gene060466:intergenic | 40.0% | |
| TACTCAAGTACCACTTTGGT+TGG | - | 47698:3508-3527 | MS.gene060466:intron | 40.0% | |
| TAGATATGTAACAGGACGAG+CGG | + | 47698:6711-6730 | MS.gene060466:intergenic | 40.0% | |
| TCCTGCAGAGAAGACTTTAA+AGG | - | 47698:5937-5956 | MS.gene060466:intron | 40.0% | |
| TGTCATGATCTTTAATGCGG+TGG | - | 47698:3806-3825 | MS.gene060466:CDS | 40.0% | |
| TTGAGGACATCAGAGATGTA+AGG | - | 47698:4764-4783 | MS.gene060466:intron | 40.0% | |
| ! | CACGCCAAAACACTCTAAAA+TGG | + | 47698:6655-6674 | MS.gene060466:intergenic | 40.0% |
| ! | GTAATCATATGTGTCGGTGT+CGG | + | 47698:3683-3702 | MS.gene060466:intergenic | 40.0% |
| ! | GTCTTGTGGTCTTTTTGCAT+TGG | - | 47698:6408-6427 | MS.gene060466:intron | 40.0% |
| ! | TAACAATGGCAGGGAGATTT+TGG | - | 47698:3464-3483 | MS.gene060466:intron | 40.0% |
| ! | TGTAGTAGTTTTCATGCAGC+TGG | - | 47698:7330-7349 | MS.gene060466:CDS | 40.0% |
| !! | ACCTTTAAAGTCTTCTCTGC+AGG | + | 47698:5941-5960 | MS.gene060466:intergenic | 40.0% |
| !! | ACTGTTGGGCTTTAAACAGT+GGG | - | 47698:5796-5815 | MS.gene060466:intron | 40.0% |
| !! | GCCAAAACACTCTAAAATGG+TGG | + | 47698:6652-6671 | MS.gene060466:intergenic | 40.0% |
| !!! | CCCACCATTTTAGAGTGTTT+TGG | - | 47698:6648-6667 | MS.gene060466:intron | 40.0% |
| AAACTTCTCTGTCCTTTCGG+TGG | - | 47698:4300-4319 | MS.gene060466:intron | 45.0% | |
| AGAGCAATTGCCAACCAAAG+TGG | + | 47698:3521-3540 | MS.gene060466:intergenic | 45.0% | |
| ATGCCTCTGTGACTAGGTTA+AGG | - | 47698:6115-6134 | MS.gene060466:intron | 45.0% | |
| CAAAGTGTGGTCAAATGGTG+TGG | - | 47698:4113-4132 | MS.gene060466:intron | 45.0% | |
| CAAATGCTCGGACATCTCTT+GGG | + | 47698:4482-4501 | MS.gene060466:intergenic | 45.0% | |
| CAAGCTTGCATTGCAGTTGA+TGG | + | 47698:4014-4033 | MS.gene060466:intergenic | 45.0% | |
| CATCTTGAGGACAAGATGAC+AGG | - | 47698:5855-5874 | MS.gene060466:CDS | 45.0% | |
| CCTGGGAAAATGATCTCAAG+AGG | - | 47698:5820-5839 | MS.gene060466:intron | 45.0% | |
| CTTACCAACAGTCATCCACT+GGG | + | 47698:3576-3595 | MS.gene060466:intergenic | 45.0% | |
| GAACTCACCATGTATGCATC+AGG | + | 47698:4661-4680 | MS.gene060466:intergenic | 45.0% | |
| GAATTGAATAGGTGGAACGG+TGG | - | 47698:5735-5754 | MS.gene060466:intron | 45.0% | |
| GACAAGATGACAGGTTAAGG+GGG | - | 47698:5864-5883 | MS.gene060466:CDS | 45.0% | |
| GAGGACAAGATGACAGGTTA+AGG | - | 47698:5861-5880 | MS.gene060466:CDS | 45.0% | |
| GATAGAAACACCGGAGTGAT+GGG | - | 47698:5467-5486 | MS.gene060466:intron | 45.0% | |
| GCCAGTTTCTGTCAGTTAAG+AGG | - | 47698:5372-5391 | MS.gene060466:intron | 45.0% | |
| GGACAAGATGACAGGTTAAG+GGG | - | 47698:5863-5882 | MS.gene060466:CDS | 45.0% | |
| GGTGGACAAGGTGAGAATAA+AGG | - | 47698:3887-3906 | MS.gene060466:intron | 45.0% | |
| TCAACTGCAATGCAAGCTTG+TGG | - | 47698:4014-4033 | MS.gene060466:intron | 45.0% | |
| TGCTGAATTAGTTAGGGTGG+AGG | - | 47698:5604-5623 | MS.gene060466:intron | 45.0% | |
| TTACCAACAGTCATCCACTG+GGG | + | 47698:3575-3594 | MS.gene060466:intergenic | 45.0% | |
| TTTGGTTGGCAATTGCTCTC+AGG | - | 47698:3522-3541 | MS.gene060466:intron | 45.0% | |
| ! | ACTCTCACTCTTTTCAGCAG+AGG | - | 47698:3198-3217 | MS.gene060466:CDS | 45.0% |
| ! | CACTGTTTAAAGCCCAACAG+TGG | + | 47698:5797-5816 | MS.gene060466:intergenic | 45.0% |
| ! | CCTCTTGAGATCATTTTCCC+AGG | + | 47698:5823-5842 | MS.gene060466:intergenic | 45.0% |
| ! | CTAAATCTGACCGGCTTCAA+AGG | - | 47698:7424-7443 | MS.gene060466:intron | 45.0% |
| ! | GCAGAGGAGGTATGTATGTA+TGG | - | 47698:3214-3233 | MS.gene060466:CDS | 45.0% |
| ! | TTAGCTTGAGTTCATCGCTG+AGG | - | 47698:3322-3341 | MS.gene060466:intron | 45.0% |
| !! | AACATACTCTTGGGGCATTG+TGG | + | 47698:6919-6938 | MS.gene060466:intergenic | 45.0% |
| !! | ACATACTCTTGGGGCATTGT+GGG | + | 47698:6918-6937 | MS.gene060466:intergenic | 45.0% |
| !! | CACTGTTGGGCTTTAAACAG+TGG | - | 47698:5795-5814 | MS.gene060466:intron | 45.0% |
| !! | GCTGGTATTTGCTTTTGCAG+AGG | - | 47698:7348-7367 | MS.gene060466:intron | 45.0% |
| !! | TGGTCGTACATTTGCTGTGA+AGG | - | 47698:4822-4841 | MS.gene060466:intron | 45.0% |
| !!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | 47698:6658-6677 | MS.gene060466:intron | 45.0% |
| CAGAGCGAGTTTCGGATAGA+CGG | - | 47698:6882-6901 | MS.gene060466:intron | 50.0% | |
| CTGCCTTAACCTAGTCACAG+AGG | + | 47698:6121-6140 | MS.gene060466:intergenic | 50.0% | |
| CTGTGAATGCCTCTGTGACT+AGG | - | 47698:6109-6128 | MS.gene060466:intron | 50.0% | |
| GCAAATGCTCGGACATCTCT+TGG | + | 47698:4483-4502 | MS.gene060466:intergenic | 50.0% | |
| GCAATTGCTCTCAGGAAGAG+AGG | - | 47698:3530-3549 | MS.gene060466:intron | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | - | 47698:3642-3661 | MS.gene060466:intron | 50.0% | |
| GCTTACCAACAGTCATCCAC+TGG | + | 47698:3577-3596 | MS.gene060466:intergenic | 50.0% | |
| GGATAGAAACACCGGAGTGA+TGG | - | 47698:5466-5485 | MS.gene060466:intron | 50.0% | |
| GTCTATCCGAAACTCGCTCT+GGG | + | 47698:6883-6902 | MS.gene060466:intergenic | 50.0% | |
| TGAAGCACGGATACGGACAT+CGG | + | 47698:3760-3779 | MS.gene060466:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | 47698:3761-3780 | MS.gene060466:CDS | 50.0% | |
| ! | CTCACTCTTTTCAGCAGAGG+AGG | - | 47698:3201-3220 | MS.gene060466:CDS | 50.0% |
| !! | ACTGACTTGGAGGCATTCGA+TGG | - | 47698:4802-4821 | MS.gene060466:intron | 50.0% |
| !! | AGTCACAGAGGCATTCACAG+AGG | + | 47698:6109-6128 | MS.gene060466:intergenic | 50.0% |
| !! | GGCTTTAAACAGTGGGACCT+GGG | - | 47698:5803-5822 | MS.gene060466:intron | 50.0% |
| !!! | AGAGTGTTTTGGCGTGTGAC+GGG | - | 47698:6659-6678 | MS.gene060466:intron | 50.0% |
| CAACAGTCATCCACTGGGGA+GGG | + | 47698:3571-3590 | MS.gene060466:intergenic | 55.0% | |
| CGTCTATCCGAAACTCGCTC+TGG | + | 47698:6884-6903 | MS.gene060466:intergenic | 55.0% | |
| CTCAGACCCAGAGCGAGTTT+CGG | - | 47698:6874-6893 | MS.gene060466:intron | 55.0% | |
| TACGGACATCGGACACCACA+CGG | + | 47698:3749-3768 | MS.gene060466:intergenic | 55.0% | |
| TCCACATGTCGACCACCGAA+AGG | + | 47698:4315-4334 | MS.gene060466:intergenic | 55.0% | |
| TCCTCAGATTAGGCGAGTCG+TGG | - | 47698:3652-3671 | MS.gene060466:intron | 55.0% | |
| TCCTTTCGGTGGTCGACATG+TGG | - | 47698:4311-4330 | MS.gene060466:intron | 55.0% | |
| TGACGGGGTGAAAATCTGGC+TGG | - | 47698:6675-6694 | MS.gene060466:intron | 55.0% | |
| ! | CGTGTGACGGGGTGAAAATC+TGG | - | 47698:6671-6690 | MS.gene060466:intron | 55.0% |
| !! | GGGCTTTAAACAGTGGGACC+TGG | - | 47698:5802-5821 | MS.gene060466:intron | 55.0% |
| !!! | GAGTGTTTTGGCGTGTGACG+GGG | - | 47698:6660-6679 | MS.gene060466:intron | 55.0% |
| ATCGGACACCACACGGACAC+TGG | + | 47698:3742-3761 | MS.gene060466:intergenic | 60.0% | |
| CATCCACTGGGGAGGGACAA+TGG | + | 47698:3564-3583 | MS.gene060466:intergenic | 60.0% | |
| CCAACAGTCATCCACTGGGG+AGG | + | 47698:3572-3591 | MS.gene060466:intergenic | 60.0% | |
| CCTCCCCAGTGGATGACTGT+TGG | - | 47698:3569-3588 | MS.gene060466:intron | 60.0% | |
| GCCACGACTCGCCTAATCTG+AGG | + | 47698:3656-3675 | MS.gene060466:intergenic | 60.0% | |
| !! | GGGGCATTGTGGGCAACTTG+TGG | + | 47698:6908-6927 | MS.gene060466:intergenic | 60.0% |
| GCTCCATTGTCCCTCCCCAG+TGG | - | 47698:3558-3577 | MS.gene060466:intron | 65.0% | |
| ! | TAGCGGTGCCAGTGTCCGTG+TGG | - | 47698:3731-3750 | MS.gene060466:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 47698 | gene | 3175 | 7507 | 3175 | ID=MS.gene060466 |
| 47698 | mRNA | 3175 | 7507 | 3175 | ID=MS.gene060466.t1;Parent=MS.gene060466 |
| 47698 | exon | 7460 | 7507 | 7460 | ID=MS.gene060466.t1.exon1;Parent=MS.gene060466.t1 |
| 47698 | CDS | 7460 | 7507 | 7460 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 7282 | 7356 | 7282 | ID=MS.gene060466.t1.exon2;Parent=MS.gene060466.t1 |
| 47698 | CDS | 7282 | 7356 | 7282 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 7092 | 7206 | 7092 | ID=MS.gene060466.t1.exon3;Parent=MS.gene060466.t1 |
| 47698 | CDS | 7092 | 7206 | 7092 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 6140 | 6239 | 6140 | ID=MS.gene060466.t1.exon4;Parent=MS.gene060466.t1 |
| 47698 | CDS | 6140 | 6239 | 6140 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 6010 | 6040 | 6010 | ID=MS.gene060466.t1.exon5;Parent=MS.gene060466.t1 |
| 47698 | CDS | 6010 | 6040 | 6010 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 5839 | 5931 | 5839 | ID=MS.gene060466.t1.exon6;Parent=MS.gene060466.t1 |
| 47698 | CDS | 5839 | 5931 | 5839 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 3751 | 3903 | 3751 | ID=MS.gene060466.t1.exon7;Parent=MS.gene060466.t1 |
| 47698 | CDS | 3751 | 3903 | 3751 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| 47698 | exon | 3175 | 3333 | 3175 | ID=MS.gene060466.t1.exon8;Parent=MS.gene060466.t1 |
| 47698 | CDS | 3175 | 3333 | 3175 | ID=cds.MS.gene060466.t1;Parent=MS.gene060466.t1 |
| Gene Sequence |
| Protein sequence |
