AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060842


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060842.t1 MTR_4g009880 98.966 290 3 0 1 290 1 290 0.0 593
MS.gene060842.t1 MTR_5g033700 28.205 234 149 4 49 282 41 255 3.31e-22 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060842.t1 AT5G57300 73.448 290 75 2 1 290 1 288 3.17e-158 442
MS.gene060842.t1 AT5G57300 73.448 290 75 2 1 290 1 288 3.17e-158 442
MS.gene060842.t1 AT5G57300 73.448 290 75 2 1 290 1 288 3.17e-158 442
MS.gene060842.t1 AT5G57300 73.448 290 75 2 1 290 1 288 3.17e-158 442
MS.gene060842.t1 AT1G23360 29.119 261 154 7 31 280 12 252 2.98e-22 93.6

Find 77 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATCAAATTCATGGCTT+TGG 0.225191 4.3:+83576795 None:intergenic
GGAGTGGTTGCCATTCATTC+AGG 0.229705 4.3:+83580150 MS.gene060842:CDS
GATTCTCATACTCTACTTTC+TGG 0.257502 4.3:-83580119 None:intergenic
CAGCATTATGTTCCACTTCC+AGG 0.259306 4.3:+83576854 MS.gene060842:CDS
GATGGTTACACTATTGCATT+TGG 0.299423 4.3:+83578431 MS.gene060842:CDS
GAGAAGATGGTTCCCTTGTT+TGG 0.306971 4.3:+83578363 MS.gene060842:CDS
AAACAGCGGGCTGCCGAAAA+AGG 0.316482 4.3:+83578224 MS.gene060842:CDS
TTGCCAACATTCAACATGTT+TGG 0.317102 4.3:-83578203 None:intergenic
ACAATCAAATTCATGGCTTT+GGG 0.326107 4.3:+83576796 None:intergenic
TGCCAACATTCAACATGTTT+GGG 0.340988 4.3:-83578202 None:intergenic
ACTCACAGTTCTTTAAATAT+AGG 0.345907 4.3:-83578667 None:intergenic
AAGTTTATTCCCCAACCTTT+TGG 0.347857 4.3:-83576827 None:intergenic
CTTGATGTGGCTGGTGGCAC+AGG 0.349838 4.3:+83577406 MS.gene060842:CDS
CATTCTCACGCCACCAGTTT+CGG 0.362182 4.3:+83576883 MS.gene060842:CDS
TGAATGTAACTAACCGAAAC+TGG 0.369852 4.3:-83576896 None:intergenic
ACACTATTGCATTTGGGATA+AGG 0.370614 4.3:+83578438 MS.gene060842:CDS
AGAAGATGGTTCCCTTGTTT+GGG 0.370951 4.3:+83578364 MS.gene060842:CDS
GGAATAGTCACCAAAAGGTT+GGG 0.387755 4.3:+83576817 MS.gene060842:CDS
CGCATAGGAGAGATGGTTGC+TGG 0.406834 4.3:+83579196 MS.gene060842:CDS
GTAGAGTATGAGAATCTAGT+TGG 0.412758 4.3:+83580126 MS.gene060842:CDS
AGATGCTTCATTCCAGGAAA+AGG 0.430797 4.3:-83577385 None:intergenic
AGCACTCATTAAATCATTCA+TGG 0.432256 4.3:-83577086 None:intergenic
TTGATAGGTTATGGAGAAGA+TGG 0.439292 4.3:+83578350 MS.gene060842:intron
TAGAGTATGAGAATCTAGTT+GGG 0.440717 4.3:+83580127 MS.gene060842:CDS
AAGTTCTTAGTGAAGCTCAT+AGG 0.441760 4.3:+83578480 MS.gene060842:CDS
AACCATCCATTGAATCATCT+TGG 0.445596 4.3:-83578415 None:intergenic
ACATCAAGATGCTTCATTCC+AGG 0.450303 4.3:-83577391 None:intergenic
ATGAATGATTTAATGAGTGC+TGG 0.460373 4.3:+83577088 MS.gene060842:CDS
GGTTCCCTTGTTTGGGTGGA+GGG 0.465219 4.3:+83578371 MS.gene060842:CDS
AGTACTTAGTTGAGAGTATC+CGG 0.465510 4.3:+83579236 MS.gene060842:CDS
GACTAACATGGCTTAGTTCA+AGG 0.468673 4.3:-83578642 None:intergenic
ATGGTTACACTATTGCATTT+GGG 0.470063 4.3:+83578432 MS.gene060842:CDS
ACTCTCAACTAAGTACTGAT+AGG 0.475235 4.3:-83579230 None:intergenic
TGCATAGACTGTGGAAAGAA+AGG 0.477937 4.3:+83577113 MS.gene060842:CDS
GCATCAATGATTGCTGATGC+AGG 0.479407 4.3:+83580093 MS.gene060842:CDS
AGATGGTTCCCTTGTTTGGG+TGG 0.486517 4.3:+83578367 MS.gene060842:CDS
GAGTTTCCAAGATGATTCAA+TGG 0.492872 4.3:+83578409 MS.gene060842:CDS
GGGAATAGTCACCAAAAGGT+TGG 0.494727 4.3:+83576816 MS.gene060842:CDS
ACATGTAAACGAAGAAGAAA+AGG 0.495399 4.3:+83577015 MS.gene060842:CDS
TTCCAAGATGATTCAATGGA+TGG 0.499743 4.3:+83578413 MS.gene060842:CDS
TGGTTCCCTTGTTTGGGTGG+AGG 0.501182 4.3:+83578370 MS.gene060842:CDS
GAGTGGTTGCCATTCATTCA+GGG 0.501280 4.3:+83580151 MS.gene060842:CDS
AACCCAAACATGTTGAATGT+TGG 0.507027 4.3:+83578200 MS.gene060842:CDS
CTTTGGGAATAGTCACCAAA+AGG 0.511333 4.3:+83576812 MS.gene060842:CDS
GAAGAAAAGGCACGCATGGT+TGG 0.513960 4.3:+83577028 MS.gene060842:CDS
GGCGTGAGAATGTAGAAGCC+TGG 0.539666 4.3:-83576872 None:intergenic
AGAATGTAGAAGCCTGGAAG+TGG 0.541500 4.3:-83576866 None:intergenic
CATTTCCCTCCACCCAAACA+AGG 0.541525 4.3:-83578376 None:intergenic
CGAAGAAGAAAAGGCACGCA+TGG 0.547778 4.3:+83577024 MS.gene060842:CDS
GGGTATTGAAACATGGCGGC+AGG 0.551535 4.3:+83578611 MS.gene060842:intron
TTCTCAGTTATTCCACGCAT+AGG 0.551549 4.3:+83579181 MS.gene060842:CDS
CATCAATGATTGCTGATGCA+GGG 0.553506 4.3:+83580094 MS.gene060842:CDS
TAAACAGAGTTAAGCAGAGA+GGG 0.553594 4.3:+83578117 MS.gene060842:CDS
ATGAAGCATCTTGATGTGGC+TGG 0.567195 4.3:+83577397 MS.gene060842:CDS
CTGGAAGTGGAACATAATGC+TGG 0.574988 4.3:-83576853 None:intergenic
AGAGTATGAGAATCTAGTTG+GGG 0.577545 4.3:+83580128 MS.gene060842:CDS
TATTCCACGCATAGGAGAGA+TGG 0.581177 4.3:+83579189 MS.gene060842:CDS
CATGGCTTAGTTCAAGGCAT+AGG 0.588289 4.3:-83578636 None:intergenic
GAATAGTCACCAAAAGGTTG+GGG 0.588614 4.3:+83576818 MS.gene060842:CDS
AAGCAGAGAGGGCTTCAAGA+CGG 0.589957 4.3:+83578128 MS.gene060842:CDS
GTTGAATGTTGGCAAACAGC+GGG 0.591584 4.3:+83578211 MS.gene060842:CDS
TTTAACAGGGTATTGAAACA+TGG 0.607121 4.3:+83578604 MS.gene060842:intron
TGAATGATTTAATGAGTGCT+GGG 0.607327 4.3:+83577089 MS.gene060842:CDS
TAAATATAGGAAGACTAACA+TGG 0.618541 4.3:-83578654 None:intergenic
TGGAATGAAGCATCTTGATG+TGG 0.622526 4.3:+83577393 MS.gene060842:CDS
GCAACCATCTCTCCTATGCG+TGG 0.623759 4.3:-83579193 None:intergenic
ATAAACAGAGTTAAGCAGAG+AGG 0.627426 4.3:+83578116 MS.gene060842:CDS
AAGGAATTGATAACCTGTGG+GGG 0.636836 4.3:-83579265 None:intergenic
GAGTATGAGAATCTAGTTGG+GGG 0.647356 4.3:+83580129 MS.gene060842:CDS
TCCAGGAAAAGGATTCAACA+TGG 0.651935 4.3:-83577374 None:intergenic
TGTTGAATGTTGGCAAACAG+CGG 0.653881 4.3:+83578210 MS.gene060842:CDS
GAAGGAATTGATAACCTGTG+GGG 0.670066 4.3:-83579266 None:intergenic
ATTTCCCTCCACCCAAACAA+GGG 0.670211 4.3:-83578375 None:intergenic
AAGCATCTTGATGTGGCTGG+TGG 0.685724 4.3:+83577400 MS.gene060842:CDS
AACAGGGTATTGAAACATGG+CGG 0.708414 4.3:+83578607 MS.gene060842:intron
ATGTAACTAACCGAAACTGG+TGG 0.730211 4.3:-83576893 None:intergenic
GTGCTGGGTTGCATAGACTG+TGG 0.765413 4.3:+83577104 MS.gene060842:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACAAATTATTTATAGAA+TGG - chr4.3:83577153-83577172 None:intergenic 10.0%
!! AATTAAATAATGAATAACAT+AGG - chr4.3:83579492-83579511 None:intergenic 10.0%
!! GTAATAATTTAAAAAAGAAA+TGG - chr4.3:83577263-83577282 None:intergenic 10.0%
!!! ATTTGTTTTAACTAAAAAAA+TGG - chr4.3:83576927-83576946 None:intergenic 10.0%
!! AATTATTTATAGAATGGAAT+AGG - chr4.3:83577147-83577166 None:intergenic 15.0%
!! TACAAGGTATATAAATTAAA+GGG - chr4.3:83578819-83578838 None:intergenic 15.0%
!! TATAATCATTAATAAGCATA+AGG + chr4.3:83578044-83578063 MS.gene060842:intron 15.0%
!! TTAATTTATCTTCATTTGTT+AGG + chr4.3:83578305-83578324 MS.gene060842:intron 15.0%
!! TTACAAGGTATATAAATTAA+AGG - chr4.3:83578820-83578839 None:intergenic 15.0%
!! TTAGAAACTATAAAGTTTAA+AGG - chr4.3:83577451-83577470 None:intergenic 15.0%
!!! ACATTTTTCCATAAAAAATT+AGG + chr4.3:83576986-83577005 MS.gene060842:intron 15.0%
!!! ATTTTTTATTGATTTTACAG+GGG + chr4.3:83578067-83578086 MS.gene060842:intron 15.0%
!!! GATTTTTTATTGATTTTACA+GGG + chr4.3:83578066-83578085 MS.gene060842:intron 15.0%
!!! TTTTTTTCATTTCTTTAACA+GGG + chr4.3:83578591-83578610 MS.gene060842:intron 15.0%
!! AAACAAATAATATTAACCTG+TGG + chr4.3:83576939-83576958 MS.gene060842:intron 20.0%
!! AAACATAATCGAAGTTTATA+TGG + chr4.3:83578843-83578862 MS.gene060842:intron 20.0%
!! AGTTATATTCTATTCAAGTA+TGG - chr4.3:83579118-83579137 None:intergenic 20.0%
!! CATGAGATATCAATAAATAA+GGG + chr4.3:83577554-83577573 MS.gene060842:intron 20.0%
!! TGACTAATGTATTATATTGA+TGG + chr4.3:83580054-83580073 MS.gene060842:intron 20.0%
!! TTGAAAAATATGTATTGTGT+GGG + chr4.3:83577742-83577761 MS.gene060842:intron 20.0%
!!! ATATAAAATGTTACTTTGAG+TGG + chr4.3:83577474-83577493 MS.gene060842:intron 20.0%
!!! GGATTTTTTATTGATTTTAC+AGG + chr4.3:83578065-83578084 MS.gene060842:intron 20.0%
!!! GTTTGAAACCTAATTTTTTA+TGG - chr4.3:83576997-83577016 None:intergenic 20.0%
!!! GTTTTTATGCTTATTTTGAT+AGG + chr4.3:83578335-83578354 MS.gene060842:intron 20.0%
!!! GTTTTTTTCATTTCTTTAAC+AGG + chr4.3:83578590-83578609 MS.gene060842:intron 20.0%
!!! TCGATTATGTTTTATTTACA+AGG - chr4.3:83578835-83578854 None:intergenic 20.0%
! ACATTAGTCAATACAGAAAA+GGG - chr4.3:83580044-83580063 None:intergenic 25.0%
! ACCTTATATAAACAGAAACT+TGG - chr4.3:83577686-83577705 None:intergenic 25.0%
! ACTAAAGCATATAAAGATGT+TGG - chr4.3:83579415-83579434 None:intergenic 25.0%
! ACTCACAGTTCTTTAAATAT+AGG - chr4.3:83578670-83578689 None:intergenic 25.0%
! ATAATGAATAACATAGGAGA+TGG - chr4.3:83579486-83579505 None:intergenic 25.0%
! CTTGAAAAATATGTATTGTG+TGG + chr4.3:83577741-83577760 MS.gene060842:intron 25.0%
! GCATGAGATATCAATAAATA+AGG + chr4.3:83577553-83577572 MS.gene060842:intron 25.0%
! TAAATATAGGAAGACTAACA+TGG - chr4.3:83578657-83578676 None:intergenic 25.0%
! TACATTAGTCAATACAGAAA+AGG - chr4.3:83580045-83580064 None:intergenic 25.0%
! TCTCCATATTAATGCAATAT+TGG - chr4.3:83577986-83578005 None:intergenic 25.0%
! TTTGAAAATTGAGGAATTCT+CGG + chr4.3:83579038-83579057 MS.gene060842:intron 25.0%
!! ACATTCTCATTTACCTTTTT+CGG - chr4.3:83578240-83578259 None:intergenic 25.0%
!! AGATCAGATATACTCATTTT+GGG + chr4.3:83579648-83579667 MS.gene060842:intron 25.0%
!! GGATATATCTTTGAAAATTG+AGG + chr4.3:83579029-83579048 MS.gene060842:intron 25.0%
!! TACGTTCATACTTCAAATTT+TGG + chr4.3:83578886-83578905 MS.gene060842:intron 25.0%
!! TTTTGGACAAAAGAATTAAG+AGG + chr4.3:83578903-83578922 MS.gene060842:intron 25.0%
!!! ACTGTGTAGTTTTTTTATGT+TGG + chr4.3:83579929-83579948 MS.gene060842:intron 25.0%
!!! ATGCTTATTTTGATAGGTTA+TGG + chr4.3:83578341-83578360 MS.gene060842:intron 25.0%
AAACAACAGATAATGTGTCT+CGG + chr4.3:83578927-83578946 MS.gene060842:intron 30.0%
AAGTTTAAAGGTGAGTATGA+AGG - chr4.3:83577439-83577458 None:intergenic 30.0%
AATCCTATACAGAACTAACA+TGG - chr4.3:83577311-83577330 None:intergenic 30.0%
ACATGTAAACGAAGAAGAAA+AGG + chr4.3:83577015-83577034 MS.gene060842:CDS 30.0%
AGCACTCATTAAATCATTCA+TGG - chr4.3:83577089-83577108 None:intergenic 30.0%
ATGAATGATTTAATGAGTGC+TGG + chr4.3:83577088-83577107 MS.gene060842:CDS 30.0%
ATGGTTACACTATTGCATTT+GGG + chr4.3:83578432-83578451 MS.gene060842:CDS 30.0%
ATTAATATGGAGAGACTTGA+AGG + chr4.3:83577993-83578012 MS.gene060842:intron 30.0%
CGACATTAATGCGTAAAAAT+CGG - chr4.3:83577285-83577304 None:intergenic 30.0%
GAACATGTAAAAACTAGTCA+CGG + chr4.3:83579712-83579731 MS.gene060842:intron 30.0%
GCCAAGTTTCTGTTTATATA+AGG + chr4.3:83577682-83577701 MS.gene060842:intron 30.0%
GTAAAAGAAGTGATGAAGTA+TGG + chr4.3:83577764-83577783 MS.gene060842:intron 30.0%
TAAGTACAGCTATCAATAGA+AGG - chr4.3:83579287-83579306 None:intergenic 30.0%
TAATTGAAACCCAAGAAAAG+AGG + chr4.3:83579507-83579526 MS.gene060842:intron 30.0%
TAGAGTATGAGAATCTAGTT+GGG + chr4.3:83580127-83580146 MS.gene060842:CDS 30.0%
TCGCCAATATTGCATTAATA+TGG + chr4.3:83577980-83577999 MS.gene060842:intron 30.0%
TGAATGATTTAATGAGTGCT+GGG + chr4.3:83577089-83577108 MS.gene060842:CDS 30.0%
TGTAATTGACACGATAAAGT+GGG - chr4.3:83579674-83579693 None:intergenic 30.0%
TGTAGTAGCAGTTAGATAAA+AGG + chr4.3:83577512-83577531 MS.gene060842:intron 30.0%
TGTTACAGATAATGTGAGAT+TGG + chr4.3:83577654-83577673 MS.gene060842:intron 30.0%
TTAATATGGAGAGACTTGAA+GGG + chr4.3:83577994-83578013 MS.gene060842:intron 30.0%
TTCTATTCAAGTATGGAAGA+AGG - chr4.3:83579111-83579130 None:intergenic 30.0%
TTCTCAAGAATGATGTGAAT+TGG + chr4.3:83578705-83578724 MS.gene060842:intron 30.0%
TTGAAGTATGAACGTAAACA+AGG - chr4.3:83578882-83578901 None:intergenic 30.0%
TTGTAATTGACACGATAAAG+TGG - chr4.3:83579675-83579694 None:intergenic 30.0%
! ATACAAAAGCCTCTTTTCTT+GGG - chr4.3:83579519-83579538 None:intergenic 30.0%
! GAGATCAGATATACTCATTT+TGG + chr4.3:83579647-83579666 MS.gene060842:intron 30.0%
! GATTTTTATCCCTGAATGAA+TGG - chr4.3:83580163-83580182 None:intergenic 30.0%
! TATACAAAAGCCTCTTTTCT+TGG - chr4.3:83579520-83579539 None:intergenic 30.0%
!! GTATTATATTGATGGATTGC+AGG + chr4.3:83580062-83580081 MS.gene060842:intron 30.0%
!! TTTAACAGGGTATTGAAACA+TGG + chr4.3:83578604-83578623 MS.gene060842:intron 30.0%
AACAACAGATAATGTGTCTC+GGG + chr4.3:83578928-83578947 MS.gene060842:intron 35.0%
AACCATCCATTGAATCATCT+TGG - chr4.3:83578418-83578437 None:intergenic 35.0%
AACCCAAACATGTTGAATGT+TGG + chr4.3:83578200-83578219 MS.gene060842:CDS 35.0%
AAGTTCTTAGTGAAGCTCAT+AGG + chr4.3:83578480-83578499 MS.gene060842:CDS 35.0%
AGAGTATGAGAATCTAGTTG+GGG + chr4.3:83580128-83580147 MS.gene060842:CDS 35.0%
ATAAACAGAGTTAAGCAGAG+AGG + chr4.3:83578116-83578135 MS.gene060842:CDS 35.0%
ATACAGCTATACCCTATGAA+AGG - chr4.3:83577931-83577950 None:intergenic 35.0%
ATGCTGTAAAATTCTCACCA+TGG + chr4.3:83577823-83577842 MS.gene060842:intron 35.0%
CATCTTGTAGAAGGATCTAT+AGG - chr4.3:83579369-83579388 None:intergenic 35.0%
CTTGAAAGAAAAGAGTAGTC+AGG + chr4.3:83579324-83579343 MS.gene060842:intron 35.0%
GAGTTTCCAAGATGATTCAA+TGG + chr4.3:83578409-83578428 MS.gene060842:CDS 35.0%
GATGGTCATTATCAACCAAT+TGG - chr4.3:83579468-83579487 None:intergenic 35.0%
GATGGTTACACTATTGCATT+TGG + chr4.3:83578431-83578450 MS.gene060842:CDS 35.0%
GATTCTCATACTCTACTTTC+TGG - chr4.3:83580122-83580141 None:intergenic 35.0%
GTAGAGTATGAGAATCTAGT+TGG + chr4.3:83580126-83580145 MS.gene060842:CDS 35.0%
TAAACAGAGTTAAGCAGAGA+GGG + chr4.3:83578117-83578136 MS.gene060842:CDS 35.0%
TAATTTCTGCTCAACTTCTC+AGG + chr4.3:83577344-83577363 MS.gene060842:intron 35.0%
TACAGCTATACCCTATGAAA+GGG - chr4.3:83577930-83577949 None:intergenic 35.0%
TCAGAGGGATATAGTTCAAA+AGG + chr4.3:83577792-83577811 MS.gene060842:intron 35.0%
TGAATGTAACTAACCGAAAC+TGG - chr4.3:83576899-83576918 None:intergenic 35.0%
TGCCAACATTCAACATGTTT+GGG - chr4.3:83578205-83578224 None:intergenic 35.0%
TGCTGTAAAATTCTCACCAT+GGG + chr4.3:83577824-83577843 MS.gene060842:intron 35.0%
TTCCAAGATGATTCAATGGA+TGG + chr4.3:83578413-83578432 MS.gene060842:CDS 35.0%
TTGATAGGTTATGGAGAAGA+TGG + chr4.3:83578350-83578369 MS.gene060842:intron 35.0%
TTGCCAACATTCAACATGTT+TGG - chr4.3:83578206-83578225 None:intergenic 35.0%
TTGGCAATGTCGATATTGTT+AGG + chr4.3:83579753-83579772 MS.gene060842:intron 35.0%
! AAGTTTATTCCCCAACCTTT+TGG - chr4.3:83576830-83576849 None:intergenic 35.0%
! ACACTATTGCATTTGGGATA+AGG + chr4.3:83578438-83578457 MS.gene060842:CDS 35.0%
! AGAAGGAATTGATAACCTGT+GGG - chr4.3:83579270-83579289 None:intergenic 35.0%
! GAATGATGTGAATTGGTGTT+TGG + chr4.3:83578712-83578731 MS.gene060842:intron 35.0%
! TAGAAGGAATTGATAACCTG+TGG - chr4.3:83579271-83579290 None:intergenic 35.0%
!! ACTCTCAACTAAGTACTGAT+AGG - chr4.3:83579233-83579252 None:intergenic 35.0%
!! AGTACTTAGTTGAGAGTATC+CGG + chr4.3:83579236-83579255 MS.gene060842:CDS 35.0%
!! TGTCCATGTTAGTTCTGTAT+AGG + chr4.3:83577305-83577324 MS.gene060842:intron 35.0%
!! TTGCTTATCGCTTGTTTCTA+AGG - chr4.3:83578985-83579004 None:intergenic 35.0%
!!! GGATGTTGCTTTTAGAATCT+TGG + chr4.3:83578088-83578107 MS.gene060842:CDS 35.0%
AAATGTCAAGAAAGCCGTGA+TGG + chr4.3:83580014-83580033 MS.gene060842:intron 40.0%
AAGGATCTATAGGTCTGTTC+AGG - chr4.3:83579359-83579378 None:intergenic 40.0%
AAGTGGTTCCAACCTTTCAT+TGG - chr4.3:83577855-83577874 None:intergenic 40.0%
AATGTCAAGAAAGCCGTGAT+GGG + chr4.3:83580015-83580034 MS.gene060842:intron 40.0%
ACAACAGATAATGTGTCTCG+GGG + chr4.3:83578929-83578948 MS.gene060842:intron 40.0%
ACAGTTATGTGAGTTTCAGG+TGG + chr4.3:83579812-83579831 MS.gene060842:intron 40.0%
ACATCAAGATGCTTCATTCC+AGG - chr4.3:83577394-83577413 None:intergenic 40.0%
ACGTGGTTCACGAGTTAATT+TGG - chr4.3:83579068-83579087 None:intergenic 40.0%
AGAAGTGATGAAGTATGGAC+TGG + chr4.3:83577769-83577788 MS.gene060842:intron 40.0%
AGATCCTTCTACAAGATGTC+CGG + chr4.3:83579371-83579390 MS.gene060842:intron 40.0%
AGATGCTTCATTCCAGGAAA+AGG - chr4.3:83577388-83577407 None:intergenic 40.0%
AGATTTGTCCTATGTTGCAC+CGG + chr4.3:83577191-83577210 MS.gene060842:intron 40.0%
AGTCATACAGTCCCTTTCAT+AGG + chr4.3:83577916-83577935 MS.gene060842:intron 40.0%
ATCGACATTGCCAATTAAGC+AGG - chr4.3:83579747-83579766 None:intergenic 40.0%
ATGAAAGGGACTGTATGACT+AGG - chr4.3:83577916-83577935 None:intergenic 40.0%
ATGTAACTAACCGAAACTGG+TGG - chr4.3:83576896-83576915 None:intergenic 40.0%
ATTACTTCGAGCTTTCGTGA+AGG + chr4.3:83578274-83578293 MS.gene060842:intron 40.0%
CAATGTCGATATTGTTAGGC+TGG + chr4.3:83579757-83579776 MS.gene060842:intron 40.0%
CATCAATGATTGCTGATGCA+GGG + chr4.3:83580094-83580113 MS.gene060842:CDS 40.0%
CTCACAGTTATGTGAGTTTC+AGG + chr4.3:83579809-83579828 MS.gene060842:intron 40.0%
CTGAAACTCACATAACTGTG+AGG - chr4.3:83579811-83579830 None:intergenic 40.0%
GAATAGTCACCAAAAGGTTG+GGG + chr4.3:83576818-83576837 MS.gene060842:CDS 40.0%
GACTAACATGGCTTAGTTCA+AGG - chr4.3:83578645-83578664 None:intergenic 40.0%
GAGTATGAGAATCTAGTTGG+GGG + chr4.3:83580129-83580148 MS.gene060842:CDS 40.0%
GCTGTAAAATTCTCACCATG+GGG + chr4.3:83577825-83577844 MS.gene060842:intron 40.0%
GGAAGAAGGCTATGATTCTA+TGG - chr4.3:83579097-83579116 None:intergenic 40.0%
GGAATAGTCACCAAAAGGTT+GGG + chr4.3:83576817-83576836 MS.gene060842:CDS 40.0%
GTCATACAGTCCCTTTCATA+GGG + chr4.3:83577917-83577936 MS.gene060842:intron 40.0%
GTCATGTTTGTATCCTACAC+CGG - chr4.3:83577213-83577232 None:intergenic 40.0%
TCAATTTCACAATGCTCCAC+AGG - chr4.3:83576958-83576977 None:intergenic 40.0%
TCCAGGAAAAGGATTCAACA+TGG - chr4.3:83577377-83577396 None:intergenic 40.0%
TCTATAGGTCTGTTCAGGAA+TGG - chr4.3:83579354-83579373 None:intergenic 40.0%
TCTGATCTCAACATTGTCTG+CGG - chr4.3:83579636-83579655 None:intergenic 40.0%
TCTTAGTGAAGCTCATAGGT+TGG + chr4.3:83578484-83578503 MS.gene060842:intron 40.0%
TGATTCTATGGCACTTTACG+TGG - chr4.3:83579085-83579104 None:intergenic 40.0%
TGCATAGACTGTGGAAAGAA+AGG + chr4.3:83577113-83577132 MS.gene060842:CDS 40.0%
TGTTACTCTTCTTCTCTTGC+AGG + chr4.3:83579143-83579162 MS.gene060842:intron 40.0%
TGTTGAATGTTGGCAAACAG+CGG + chr4.3:83578210-83578229 MS.gene060842:CDS 40.0%
TTCTCAGTTATTCCACGCAT+AGG + chr4.3:83579181-83579200 MS.gene060842:CDS 40.0%
! AAAGCGCTAGAGAATTGTGT+GGG + chr4.3:83579003-83579022 MS.gene060842:intron 40.0%
! AAGGAATTGATAACCTGTGG+GGG - chr4.3:83579268-83579287 None:intergenic 40.0%
! AGAAGATGGTTCCCTTGTTT+GGG + chr4.3:83578364-83578383 MS.gene060842:CDS 40.0%
! CTTTGGGAATAGTCACCAAA+AGG + chr4.3:83576812-83576831 MS.gene060842:CDS 40.0%
! GAAGGAATTGATAACCTGTG+GGG - chr4.3:83579269-83579288 None:intergenic 40.0%
! GGTTCACGAGTTAATTTGGT+TGG - chr4.3:83579064-83579083 None:intergenic 40.0%
! GTGAATAAAAGCGTAGAGTG+AGG + chr4.3:83579433-83579452 MS.gene060842:intron 40.0%
! TCCATGTTGAATCCTTTTCC+TGG + chr4.3:83577373-83577392 MS.gene060842:CDS 40.0%
! TGGAATGAAGCATCTTGATG+TGG + chr4.3:83577393-83577412 MS.gene060842:CDS 40.0%
!! AACAGGGTATTGAAACATGG+CGG + chr4.3:83578607-83578626 MS.gene060842:intron 40.0%
!! CGGTTTTATCGATGTTCTAG+AGG + chr4.3:83578148-83578167 MS.gene060842:CDS 40.0%
AAAACTAGTCACGGTCCGTA+AGG + chr4.3:83579721-83579740 MS.gene060842:intron 45.0%
AAAGCGTAGAGTGAGGAAGA+TGG + chr4.3:83579440-83579459 MS.gene060842:intron 45.0%
AAAGGTTGGAACCACTTGTG+AGG + chr4.3:83577858-83577877 MS.gene060842:intron 45.0%
AAGCGTAGAGTGAGGAAGAT+GGG + chr4.3:83579441-83579460 MS.gene060842:intron 45.0%
AAGGTTGGAACCACTTGTGA+GGG + chr4.3:83577859-83577878 MS.gene060842:intron 45.0%
ACAGCTGAATGTGGAAGACT+GGG - chr4.3:83579560-83579579 None:intergenic 45.0%
AGAATGTAGAAGCCTGGAAG+TGG - chr4.3:83576869-83576888 None:intergenic 45.0%
ATTTCCCTCCACCCAAACAA+GGG - chr4.3:83578378-83578397 None:intergenic 45.0%
CAACAGATAATGTGTCTCGG+GGG + chr4.3:83578930-83578949 MS.gene060842:intron 45.0%
CACATTCAGCTGTAAGAGGA+AGG + chr4.3:83579567-83579586 MS.gene060842:intron 45.0%
CACGGCTTTCTTGACATTTG+AGG - chr4.3:83580013-83580032 None:intergenic 45.0%
CAGAAAAGGGTAACCCATCA+CGG - chr4.3:83580031-83580050 None:intergenic 45.0%
CAGCATTATGTTCCACTTCC+AGG + chr4.3:83576854-83576873 MS.gene060842:CDS 45.0%
CATGGCTTAGTTCAAGGCAT+AGG - chr4.3:83578639-83578658 None:intergenic 45.0%
CTGGAAGTGGAACATAATGC+TGG - chr4.3:83576856-83576875 None:intergenic 45.0%
CTTCCACATTCAGCTGTAAG+AGG + chr4.3:83579563-83579582 MS.gene060842:intron 45.0%
CTTCCTCTTACAGCTGAATG+TGG - chr4.3:83579569-83579588 None:intergenic 45.0%
GAGAAGATGGTTCCCTTGTT+TGG + chr4.3:83578363-83578382 MS.gene060842:CDS 45.0%
GAGTGGTTGCCATTCATTCA+GGG + chr4.3:83580151-83580170 MS.gene060842:CDS 45.0%
GCAGTGAACTGAACTGTATC+CGG - chr4.3:83579393-83579412 None:intergenic 45.0%
GCATCAATGATTGCTGATGC+AGG + chr4.3:83580093-83580112 MS.gene060842:CDS 45.0%
GCTAGAGAATTGTGTGGGAA+AGG + chr4.3:83579008-83579027 MS.gene060842:intron 45.0%
GGGAATAGTCACCAAAAGGT+TGG + chr4.3:83576816-83576835 MS.gene060842:CDS 45.0%
GTAAAATTCTCACCATGGGG+AGG + chr4.3:83577828-83577847 MS.gene060842:intron 45.0%
GTATCCGGACATCTTGTAGA+AGG - chr4.3:83579378-83579397 None:intergenic 45.0%
GTTGAATGTTGGCAAACAGC+GGG + chr4.3:83578211-83578230 MS.gene060842:CDS 45.0%
TACAGCTGAATGTGGAAGAC+TGG - chr4.3:83579561-83579580 None:intergenic 45.0%
TATTCCACGCATAGGAGAGA+TGG + chr4.3:83579189-83579208 MS.gene060842:CDS 45.0%
TGCCAATTAAGCAGGCCTTA+CGG - chr4.3:83579739-83579758 None:intergenic 45.0%
TTAGGCTGGACATCTTCATC+CGG + chr4.3:83579771-83579790 MS.gene060842:intron 45.0%
! ATGAAGCATCTTGATGTGGC+TGG + chr4.3:83577397-83577416 MS.gene060842:CDS 45.0%
! CAAAGCGCTAGAGAATTGTG+TGG + chr4.3:83579002-83579021 MS.gene060842:intron 45.0%
!! ATGAAGTATGGACTGGTCAG+AGG + chr4.3:83577776-83577795 MS.gene060842:intron 45.0%
!! TGAAGTATGGACTGGTCAGA+GGG + chr4.3:83577777-83577796 MS.gene060842:intron 45.0%
!! AATTAAAAATTTAAGTAAAT+TGG + chr4.3:83577712-83577731 MS.gene060842:intron 5.0%
!!! AGTTTTTTTTTTTTTTTTTT+AGG - chr4.3:83579862-83579881 None:intergenic 5.0%
AAGCAGAGAGGGCTTCAAGA+CGG + chr4.3:83578128-83578147 MS.gene060842:CDS 50.0%
AAGCATCTTGATGTGGCTGG+TGG + chr4.3:83577400-83577419 MS.gene060842:CDS 50.0%
AGTCTAGAGACCCTCACAAG+TGG - chr4.3:83577872-83577891 None:intergenic 50.0%
ATCCTACACCGGTGCAACAT+AGG - chr4.3:83577202-83577221 None:intergenic 50.0%
CAGCTGAATGTGGAAGACTG+GGG - chr4.3:83579559-83579578 None:intergenic 50.0%
CATTCTCACGCCACCAGTTT+CGG + chr4.3:83576883-83576902 MS.gene060842:CDS 50.0%
CATTTCCCTCCACCCAAACA+AGG - chr4.3:83578379-83578398 None:intergenic 50.0%
CTCACATAACTGTGAGGTCC+CGG - chr4.3:83579805-83579824 None:intergenic 50.0%
GGACTGTATGACTAGGACGA+TGG - chr4.3:83577909-83577928 None:intergenic 50.0%
GGAGTGGTTGCCATTCATTC+AGG + chr4.3:83580150-83580169 MS.gene060842:CDS 50.0%
GTCCGTAAGGCCTGCTTAAT+TGG + chr4.3:83579734-83579753 MS.gene060842:intron 50.0%
GTGAGGAAGATGGGTCCAAT+TGG + chr4.3:83579450-83579469 MS.gene060842:intron 50.0%
TAGGCTGGACATCTTCATCC+GGG + chr4.3:83579772-83579791 MS.gene060842:intron 50.0%
TCACATAACTGTGAGGTCCC+GGG - chr4.3:83579804-83579823 None:intergenic 50.0%
TCTTCATCCGGGTTCAAACC+CGG + chr4.3:83579783-83579802 MS.gene060842:intron 50.0%
TGAGAATCTAGTTGGGGGAG+TGG + chr4.3:83580134-83580153 MS.gene060842:CDS 50.0%
! AGATGGTTCCCTTGTTTGGG+TGG + chr4.3:83578367-83578386 MS.gene060842:CDS 50.0%
! CGAAGAAGAAAAGGCACGCA+TGG + chr4.3:83577024-83577043 MS.gene060842:CDS 50.0%
! GAAGAAAAGGCACGCATGGT+TGG + chr4.3:83577028-83577047 MS.gene060842:CDS 50.0%
CCATGGGGAGGTCCAATGAA+AGG + chr4.3:83577840-83577859 MS.gene060842:intron 55.0%
CCTTTCATTGGACCTCCCCA+TGG - chr4.3:83577843-83577862 None:intergenic 55.0%
CGCATAGGAGAGATGGTTGC+TGG + chr4.3:83579196-83579215 MS.gene060842:CDS 55.0%
CTTCATCCGGGTTCAAACCC+GGG + chr4.3:83579784-83579803 MS.gene060842:intron 55.0%
GCAACCATCTCTCCTATGCG+TGG - chr4.3:83579196-83579215 None:intergenic 55.0%
GGCGTGAGAATGTAGAAGCC+TGG - chr4.3:83576875-83576894 None:intergenic 55.0%
GGGGAGGTCCAATGAAAGGT+TGG + chr4.3:83577844-83577863 MS.gene060842:intron 55.0%
GTGCTGGGTTGCATAGACTG+TGG + chr4.3:83577104-83577123 MS.gene060842:CDS 55.0%
TAACCTGTGGGGGAAAACGC+CGG - chr4.3:83579258-83579277 None:intergenic 55.0%
! GGTTCCCTTGTTTGGGTGGA+GGG + chr4.3:83578371-83578390 MS.gene060842:CDS 55.0%
! GTCCTATGTTGCACCGGTGT+AGG + chr4.3:83577197-83577216 MS.gene060842:intron 55.0%
! TGGTTCCCTTGTTTGGGTGG+AGG + chr4.3:83578370-83578389 MS.gene060842:CDS 55.0%
!! AAACAGCGGGCTGCCGAAAA+AGG + chr4.3:83578224-83578243 MS.gene060842:CDS 55.0%
!! GGGTATTGAAACATGGCGGC+AGG + chr4.3:83578611-83578630 MS.gene060842:intron 55.0%
CTTGATGTGGCTGGTGGCAC+AGG + chr4.3:83577406-83577425 MS.gene060842:CDS 60.0%
TGAGGTCCCGGGTTTGAACC+CGG - chr4.3:83579793-83579812 None:intergenic 60.0%
! TATCCGGCGTTTTCCCCCAC+AGG + chr4.3:83579252-83579271 MS.gene060842:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 83576808 83580185 83576808 ID=MS.gene060842
chr4.3 mRNA 83576808 83580185 83576808 ID=MS.gene060842.t1;Parent=MS.gene060842
chr4.3 exon 83576808 83576904 83576808 ID=MS.gene060842.t1.exon1;Parent=MS.gene060842.t1
chr4.3 CDS 83576808 83576904 83576808 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83577008 83577134 83577008 ID=MS.gene060842.t1.exon2;Parent=MS.gene060842.t1
chr4.3 CDS 83577008 83577134 83577008 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83577366 83577427 83577366 ID=MS.gene060842.t1.exon3;Parent=MS.gene060842.t1
chr4.3 CDS 83577366 83577427 83577366 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83578087 83578245 83578087 ID=MS.gene060842.t1.exon4;Parent=MS.gene060842.t1
chr4.3 CDS 83578087 83578245 83578087 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83578357 83578501 83578357 ID=MS.gene060842.t1.exon5;Parent=MS.gene060842.t1
chr4.3 CDS 83578357 83578501 83578357 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83578612 83578683 83578612 ID=MS.gene060842.t1.exon6;Parent=MS.gene060842.t1
chr4.3 CDS 83578612 83578683 83578612 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83579165 83579273 83579165 ID=MS.gene060842.t1.exon7;Parent=MS.gene060842.t1
chr4.3 CDS 83579165 83579273 83579165 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
chr4.3 exon 83580084 83580185 83580084 ID=MS.gene060842.t1.exon8;Parent=MS.gene060842.t1
chr4.3 CDS 83580084 83580185 83580084 ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1
Gene Sequence

>MS.gene060842

ATGGCTTTGGGAATAGTCACCAAAAGGTTGGGGAATAAACTTTTTCCAGCATTATGTTCCACTTCCAGGCTTCTACATTCTCACGCCACCAGTTTCGGTTAGTTACATTCAAATTTCCATTTTTTTAGTTAAAACAAATAATATTAACCTGTGGAGCATTGTGAAATTGATTCGATTCACATTTTTCCATAAAAAATTAGGTTTCAAACATGTAAACGAAGAAGAAAAGGCACGCATGGTTGGAGATGTATTTACAAGTGTTGCTAAAAACTATGACACCATGAATGATTTAATGAGTGCTGGGTTGCATAGACTGTGGAAAGAAAGGTTACATTACCTATTCCATTCTATAAATAATTTGTATTTTTCTGTTTTAATTGATTAGATTTGTCCTATGTTGCACCGGTGTAGGATACAAACATGACATTGACACATGTTACATACAGTTTCTTCCATTTCTTTTTTAAATTATTACCGATTTTTACGCATTAATGTCGTGTCCATGTTAGTTCTGTATAGGATTTGACGTTAATCTGTAATTTCTGCTCAACTTCTCAGGCTAGTTTCCATGTTGAATCCTTTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGCACAGGTCTGCATCCTTCATACTCACCTTTAAACTTTATAGTTTCTAAAGAATATAAAATGTTACTTTGAGTGGTGCAATTGAAATTGTTGTAGTAGCAGTTAGATAAAAGGACTGATTAATATAAGATAGCATGAGATATCAATAAATAAGGGTATTGCTAGAAGAAGTAATCAATACTATCTTGATACGTTAAAGTCATAAATAATTCGAAACGAGTCAATATTCTAAATGTTACAGATAATGTGAGATTGGAGAGTGCCAAGTTTCTGTTTATATAAGGTTAAAAAAATTAAAAATTTAAGTAAATTGGCGCAGTCTTGAAAAATATGTATTGTGTGGGTAAAAGAAGTGATGAAGTATGGACTGGTCAGAGGGATATAGTTCAAAAGGACGATCTGATGCTGTAAAATTCTCACCATGGGGAGGTCCAATGAAAGGTTGGAACCACTTGTGAGGGTCTCTAGACTATCAGTTTTGCTTTCCATCGTCCTAGTCATACAGTCCCTTTCATAGGGTATAGCTGTATTTTTGTTTAACATAGAAGCTTTGTTCTGCTCGCCAATATTGCATTAATATGGAGAGACTTGAAGGGTACTGCTGCTGCTGCAGCATCATATCATATAATCATTAATAAGCATAAGGATTTTTTATTGATTTTACAGGGGATGTTGCTTTTAGAATCTTGGATAACATAAACAGAGTTAAGCAGAGAGGGCTTCAAGACGGTTTTATCGATGTTCTAGAGGCAAAAACTCAGATATATGTATGTGACATTAACCCAAACATGTTGAATGTTGGCAAACAGCGGGCTGCCGAAAAAGGTAAATGAGAATGTCTTAGAATGCAACAATTACTTCGAGCTTTCGTGAAGGATTTTGATTTAATTTATCTTCATTTGTTAGGAGTGAATGTTTTTATGCTTATTTTGATAGGTTATGGAGAAGATGGTTCCCTTGTTTGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAGATGATTCAATGGATGGTTACACTATTGCATTTGGGATAAGGAATGTTACACACATCGAGAAAGTTCTTAGTGAAGCTCATAGGTTGGTTTGCATTTTTTACGAGATTGCTGCGACTTGTATGATTTCGAAGCTAATAGCAATCAATTAAATTTGTGCTAATTTTACTGTTGTTTTTTTCATTTCTTTAACAGGGTATTGAAACATGGCGGCAGGTTCCTATGCCTTGAACTAAGCCATGTTAGTCTTCCTATATTTAAAGAACTGTGAGTATCATTATCTCTATTTTCTCAAGAATGATGTGAATTGGTGTTTGGCACGTTAAAATAAAAATAGAGACTGATGATATGCACACAAATCACGTTTGAAAAATAAAATACAACTACAATAAAGCTCAACCCTTTAATTTATATACCTTGTAAATAAAACATAATCGAAGTTTATATGGAACTTTTTCATCTCCTTGTTTACGTTCATACTTCAAATTTTGGACAAAAGAATTAAGAGGAAAACAACAGATAATGTGTCTCGGGGGACATTAAGAAACAAATCAGTAATAAAACTCCTTAGAAACAAGCGATAAGCAAAGCGCTAGAGAATTGTGTGGGAAAGGATATATCTTTGAAAATTGAGGAATTCTCGGCCAACCAAATTAACTCGTGAACCACGTAAAGTGCCATAGAATCATAGCCTTCTTCCATACTTGAATAGAATATAACTCTTTATGTTACTCTTCTTCTCTTGCAGGTATGACTTATATTCTTTCTCAGTTATTCCACGCATAGGAGAGATGGTTGCTGGCGACAGAGAGTCCTATCAGTACTTAGTTGAGAGTATCCGGCGTTTTCCCCCACAGGTTATCAATTCCTTCTATTGATAGCTGTACTTATTTTTACTTCATTTTAGCTTGAAAGAAAAGAGTAGTCAGGACTTCCATTCCTGAACAGACCTATAGATCCTTCTACAAGATGTCCGGATACAGTTCAGTTCACTGCCAACATCTTTATATGCTTTAGTGAATAAAAGCGTAGAGTGAGGAAGATGGGTCCAATTGGTTGATAATGACCATCTCCTATGTTATTCATTATTTAATTGAAACCCAAGAAAAGAGGCTTTTGTATAAGTTTTGCTAATCTCTCCCCAGTCTTCCACATTCAGCTGTAAGAGGAAGGATGCTCAAAGAATCTTTTGTCTTATTGTTTTCATAAAATTTATCCGCAGACAATGTTGAGATCAGATATACTCATTTTGGGCCCACTTTATCGTGTCAATTACAAATCTAAGTTATATTATTGAACATGTAAAAACTAGTCACGGTCCGTAAGGCCTGCTTAATTGGCAATGTCGATATTGTTAGGCTGGACATCTTCATCCGGGTTCAAACCCGGGACCTCACAGTTATGTGAGTTTCAGGTGGTGCTTTAGCACTTTCATCTGTGAACCTAAAAAAAAAAAAAAAAAACTAGTCACAAAACTATTGACTTTTTATTCAGCAGTGTATTGTTTTCTGCACTGTGTAGTTTTTTTATGTTGGAAATTTACTTATATATGCTTGACTTCATAAGAATTGTGCAGAAACTTCTCTAATGAGACCTCAAATGTCAAGAAAGCCGTGATGGGTTACCCTTTTCTGTATTGACTAATGTATTATATTGATGGATTGCAGGAAAAATTTGCATCAATGATTGCTGATGCAGGGTTCCAGAAAGTAGAGTATGAGAATCTAGTTGGGGGAGTGGTTGCCATTCATTCAGGGATAAAAATCTGA

Protein sequence

>MS.gene060842.t1

MALGIVTKRLGNKLFPALCSTSRLLHSHATSFGFKHVNEEEKARMVGDVFTSVAKNYDTMNDLMSAGLHRLWKERLVSMLNPFPGMKHLDVAGGTGDVAFRILDNINRVKQRGLQDGFIDVLEAKTQIYVCDINPNMLNVGKQRAAEKGYGEDGSLVWVEGNAESLSFQDDSMDGYTIAFGIRNVTHIEKVLSEAHRVLKHGGRFLCLELSHVSLPIFKELYDLYSFSVIPRIGEMVAGDRESYQYLVESIRRFPPQEKFASMIADAGFQKVEYENLVGGVVAIHSGIKI