Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060842.t1 | XP_003604349.1 | 99 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 9.80E-162 | 579.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060842.t1 | Q9LVC8 | 73.8 | 290 | 74 | 2 | 1 | 290 | 1 | 288 | 6.1e-120 | 431.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060842.t1 | B7FL93 | 99.0 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 7.1e-162 | 579.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060842 | MS.gene61163 | 0.818558 | 1.84E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene060842 | MS.gene44339 | PPI |
MS.gene060842 | MS.gene53448 | PPI |
MS.gene027672 | MS.gene060842 | PPI |
MS.gene80725 | MS.gene060842 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060842.t1 | MTR_4g009880 | 98.966 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 0.0 | 593 |
MS.gene060842.t1 | MTR_5g033700 | 28.205 | 234 | 149 | 4 | 49 | 282 | 41 | 255 | 3.31e-22 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060842.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
MS.gene060842.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
MS.gene060842.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
MS.gene060842.t1 | AT5G57300 | 73.448 | 290 | 75 | 2 | 1 | 290 | 1 | 288 | 3.17e-158 | 442 |
MS.gene060842.t1 | AT1G23360 | 29.119 | 261 | 154 | 7 | 31 | 280 | 12 | 252 | 2.98e-22 | 93.6 |
Find 77 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAATCAAATTCATGGCTT+TGG | 0.225191 | 4.3:+83576795 | None:intergenic |
GGAGTGGTTGCCATTCATTC+AGG | 0.229705 | 4.3:+83580150 | MS.gene060842:CDS |
GATTCTCATACTCTACTTTC+TGG | 0.257502 | 4.3:-83580119 | None:intergenic |
CAGCATTATGTTCCACTTCC+AGG | 0.259306 | 4.3:+83576854 | MS.gene060842:CDS |
GATGGTTACACTATTGCATT+TGG | 0.299423 | 4.3:+83578431 | MS.gene060842:CDS |
GAGAAGATGGTTCCCTTGTT+TGG | 0.306971 | 4.3:+83578363 | MS.gene060842:CDS |
AAACAGCGGGCTGCCGAAAA+AGG | 0.316482 | 4.3:+83578224 | MS.gene060842:CDS |
TTGCCAACATTCAACATGTT+TGG | 0.317102 | 4.3:-83578203 | None:intergenic |
ACAATCAAATTCATGGCTTT+GGG | 0.326107 | 4.3:+83576796 | None:intergenic |
TGCCAACATTCAACATGTTT+GGG | 0.340988 | 4.3:-83578202 | None:intergenic |
ACTCACAGTTCTTTAAATAT+AGG | 0.345907 | 4.3:-83578667 | None:intergenic |
AAGTTTATTCCCCAACCTTT+TGG | 0.347857 | 4.3:-83576827 | None:intergenic |
CTTGATGTGGCTGGTGGCAC+AGG | 0.349838 | 4.3:+83577406 | MS.gene060842:CDS |
CATTCTCACGCCACCAGTTT+CGG | 0.362182 | 4.3:+83576883 | MS.gene060842:CDS |
TGAATGTAACTAACCGAAAC+TGG | 0.369852 | 4.3:-83576896 | None:intergenic |
ACACTATTGCATTTGGGATA+AGG | 0.370614 | 4.3:+83578438 | MS.gene060842:CDS |
AGAAGATGGTTCCCTTGTTT+GGG | 0.370951 | 4.3:+83578364 | MS.gene060842:CDS |
GGAATAGTCACCAAAAGGTT+GGG | 0.387755 | 4.3:+83576817 | MS.gene060842:CDS |
CGCATAGGAGAGATGGTTGC+TGG | 0.406834 | 4.3:+83579196 | MS.gene060842:CDS |
GTAGAGTATGAGAATCTAGT+TGG | 0.412758 | 4.3:+83580126 | MS.gene060842:CDS |
AGATGCTTCATTCCAGGAAA+AGG | 0.430797 | 4.3:-83577385 | None:intergenic |
AGCACTCATTAAATCATTCA+TGG | 0.432256 | 4.3:-83577086 | None:intergenic |
TTGATAGGTTATGGAGAAGA+TGG | 0.439292 | 4.3:+83578350 | MS.gene060842:intron |
TAGAGTATGAGAATCTAGTT+GGG | 0.440717 | 4.3:+83580127 | MS.gene060842:CDS |
AAGTTCTTAGTGAAGCTCAT+AGG | 0.441760 | 4.3:+83578480 | MS.gene060842:CDS |
AACCATCCATTGAATCATCT+TGG | 0.445596 | 4.3:-83578415 | None:intergenic |
ACATCAAGATGCTTCATTCC+AGG | 0.450303 | 4.3:-83577391 | None:intergenic |
ATGAATGATTTAATGAGTGC+TGG | 0.460373 | 4.3:+83577088 | MS.gene060842:CDS |
GGTTCCCTTGTTTGGGTGGA+GGG | 0.465219 | 4.3:+83578371 | MS.gene060842:CDS |
AGTACTTAGTTGAGAGTATC+CGG | 0.465510 | 4.3:+83579236 | MS.gene060842:CDS |
GACTAACATGGCTTAGTTCA+AGG | 0.468673 | 4.3:-83578642 | None:intergenic |
ATGGTTACACTATTGCATTT+GGG | 0.470063 | 4.3:+83578432 | MS.gene060842:CDS |
ACTCTCAACTAAGTACTGAT+AGG | 0.475235 | 4.3:-83579230 | None:intergenic |
TGCATAGACTGTGGAAAGAA+AGG | 0.477937 | 4.3:+83577113 | MS.gene060842:CDS |
GCATCAATGATTGCTGATGC+AGG | 0.479407 | 4.3:+83580093 | MS.gene060842:CDS |
AGATGGTTCCCTTGTTTGGG+TGG | 0.486517 | 4.3:+83578367 | MS.gene060842:CDS |
GAGTTTCCAAGATGATTCAA+TGG | 0.492872 | 4.3:+83578409 | MS.gene060842:CDS |
GGGAATAGTCACCAAAAGGT+TGG | 0.494727 | 4.3:+83576816 | MS.gene060842:CDS |
ACATGTAAACGAAGAAGAAA+AGG | 0.495399 | 4.3:+83577015 | MS.gene060842:CDS |
TTCCAAGATGATTCAATGGA+TGG | 0.499743 | 4.3:+83578413 | MS.gene060842:CDS |
TGGTTCCCTTGTTTGGGTGG+AGG | 0.501182 | 4.3:+83578370 | MS.gene060842:CDS |
GAGTGGTTGCCATTCATTCA+GGG | 0.501280 | 4.3:+83580151 | MS.gene060842:CDS |
AACCCAAACATGTTGAATGT+TGG | 0.507027 | 4.3:+83578200 | MS.gene060842:CDS |
CTTTGGGAATAGTCACCAAA+AGG | 0.511333 | 4.3:+83576812 | MS.gene060842:CDS |
GAAGAAAAGGCACGCATGGT+TGG | 0.513960 | 4.3:+83577028 | MS.gene060842:CDS |
GGCGTGAGAATGTAGAAGCC+TGG | 0.539666 | 4.3:-83576872 | None:intergenic |
AGAATGTAGAAGCCTGGAAG+TGG | 0.541500 | 4.3:-83576866 | None:intergenic |
CATTTCCCTCCACCCAAACA+AGG | 0.541525 | 4.3:-83578376 | None:intergenic |
CGAAGAAGAAAAGGCACGCA+TGG | 0.547778 | 4.3:+83577024 | MS.gene060842:CDS |
GGGTATTGAAACATGGCGGC+AGG | 0.551535 | 4.3:+83578611 | MS.gene060842:intron |
TTCTCAGTTATTCCACGCAT+AGG | 0.551549 | 4.3:+83579181 | MS.gene060842:CDS |
CATCAATGATTGCTGATGCA+GGG | 0.553506 | 4.3:+83580094 | MS.gene060842:CDS |
TAAACAGAGTTAAGCAGAGA+GGG | 0.553594 | 4.3:+83578117 | MS.gene060842:CDS |
ATGAAGCATCTTGATGTGGC+TGG | 0.567195 | 4.3:+83577397 | MS.gene060842:CDS |
CTGGAAGTGGAACATAATGC+TGG | 0.574988 | 4.3:-83576853 | None:intergenic |
AGAGTATGAGAATCTAGTTG+GGG | 0.577545 | 4.3:+83580128 | MS.gene060842:CDS |
TATTCCACGCATAGGAGAGA+TGG | 0.581177 | 4.3:+83579189 | MS.gene060842:CDS |
CATGGCTTAGTTCAAGGCAT+AGG | 0.588289 | 4.3:-83578636 | None:intergenic |
GAATAGTCACCAAAAGGTTG+GGG | 0.588614 | 4.3:+83576818 | MS.gene060842:CDS |
AAGCAGAGAGGGCTTCAAGA+CGG | 0.589957 | 4.3:+83578128 | MS.gene060842:CDS |
GTTGAATGTTGGCAAACAGC+GGG | 0.591584 | 4.3:+83578211 | MS.gene060842:CDS |
TTTAACAGGGTATTGAAACA+TGG | 0.607121 | 4.3:+83578604 | MS.gene060842:intron |
TGAATGATTTAATGAGTGCT+GGG | 0.607327 | 4.3:+83577089 | MS.gene060842:CDS |
TAAATATAGGAAGACTAACA+TGG | 0.618541 | 4.3:-83578654 | None:intergenic |
TGGAATGAAGCATCTTGATG+TGG | 0.622526 | 4.3:+83577393 | MS.gene060842:CDS |
GCAACCATCTCTCCTATGCG+TGG | 0.623759 | 4.3:-83579193 | None:intergenic |
ATAAACAGAGTTAAGCAGAG+AGG | 0.627426 | 4.3:+83578116 | MS.gene060842:CDS |
AAGGAATTGATAACCTGTGG+GGG | 0.636836 | 4.3:-83579265 | None:intergenic |
GAGTATGAGAATCTAGTTGG+GGG | 0.647356 | 4.3:+83580129 | MS.gene060842:CDS |
TCCAGGAAAAGGATTCAACA+TGG | 0.651935 | 4.3:-83577374 | None:intergenic |
TGTTGAATGTTGGCAAACAG+CGG | 0.653881 | 4.3:+83578210 | MS.gene060842:CDS |
GAAGGAATTGATAACCTGTG+GGG | 0.670066 | 4.3:-83579266 | None:intergenic |
ATTTCCCTCCACCCAAACAA+GGG | 0.670211 | 4.3:-83578375 | None:intergenic |
AAGCATCTTGATGTGGCTGG+TGG | 0.685724 | 4.3:+83577400 | MS.gene060842:CDS |
AACAGGGTATTGAAACATGG+CGG | 0.708414 | 4.3:+83578607 | MS.gene060842:intron |
ATGTAACTAACCGAAACTGG+TGG | 0.730211 | 4.3:-83576893 | None:intergenic |
GTGCTGGGTTGCATAGACTG+TGG | 0.765413 | 4.3:+83577104 | MS.gene060842:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATACAAATTATTTATAGAA+TGG | - | chr4.3:83577153-83577172 | None:intergenic | 10.0% |
!! | AATTAAATAATGAATAACAT+AGG | - | chr4.3:83579492-83579511 | None:intergenic | 10.0% |
!! | GTAATAATTTAAAAAAGAAA+TGG | - | chr4.3:83577263-83577282 | None:intergenic | 10.0% |
!!! | ATTTGTTTTAACTAAAAAAA+TGG | - | chr4.3:83576927-83576946 | None:intergenic | 10.0% |
!! | AATTATTTATAGAATGGAAT+AGG | - | chr4.3:83577147-83577166 | None:intergenic | 15.0% |
!! | TACAAGGTATATAAATTAAA+GGG | - | chr4.3:83578819-83578838 | None:intergenic | 15.0% |
!! | TATAATCATTAATAAGCATA+AGG | + | chr4.3:83578044-83578063 | MS.gene060842:intron | 15.0% |
!! | TTAATTTATCTTCATTTGTT+AGG | + | chr4.3:83578305-83578324 | MS.gene060842:intron | 15.0% |
!! | TTACAAGGTATATAAATTAA+AGG | - | chr4.3:83578820-83578839 | None:intergenic | 15.0% |
!! | TTAGAAACTATAAAGTTTAA+AGG | - | chr4.3:83577451-83577470 | None:intergenic | 15.0% |
!!! | ACATTTTTCCATAAAAAATT+AGG | + | chr4.3:83576986-83577005 | MS.gene060842:intron | 15.0% |
!!! | ATTTTTTATTGATTTTACAG+GGG | + | chr4.3:83578067-83578086 | MS.gene060842:intron | 15.0% |
!!! | GATTTTTTATTGATTTTACA+GGG | + | chr4.3:83578066-83578085 | MS.gene060842:intron | 15.0% |
!!! | TTTTTTTCATTTCTTTAACA+GGG | + | chr4.3:83578591-83578610 | MS.gene060842:intron | 15.0% |
!! | AAACAAATAATATTAACCTG+TGG | + | chr4.3:83576939-83576958 | MS.gene060842:intron | 20.0% |
!! | AAACATAATCGAAGTTTATA+TGG | + | chr4.3:83578843-83578862 | MS.gene060842:intron | 20.0% |
!! | AGTTATATTCTATTCAAGTA+TGG | - | chr4.3:83579118-83579137 | None:intergenic | 20.0% |
!! | CATGAGATATCAATAAATAA+GGG | + | chr4.3:83577554-83577573 | MS.gene060842:intron | 20.0% |
!! | TGACTAATGTATTATATTGA+TGG | + | chr4.3:83580054-83580073 | MS.gene060842:intron | 20.0% |
!! | TTGAAAAATATGTATTGTGT+GGG | + | chr4.3:83577742-83577761 | MS.gene060842:intron | 20.0% |
!!! | ATATAAAATGTTACTTTGAG+TGG | + | chr4.3:83577474-83577493 | MS.gene060842:intron | 20.0% |
!!! | GGATTTTTTATTGATTTTAC+AGG | + | chr4.3:83578065-83578084 | MS.gene060842:intron | 20.0% |
!!! | GTTTGAAACCTAATTTTTTA+TGG | - | chr4.3:83576997-83577016 | None:intergenic | 20.0% |
!!! | GTTTTTATGCTTATTTTGAT+AGG | + | chr4.3:83578335-83578354 | MS.gene060842:intron | 20.0% |
!!! | GTTTTTTTCATTTCTTTAAC+AGG | + | chr4.3:83578590-83578609 | MS.gene060842:intron | 20.0% |
!!! | TCGATTATGTTTTATTTACA+AGG | - | chr4.3:83578835-83578854 | None:intergenic | 20.0% |
! | ACATTAGTCAATACAGAAAA+GGG | - | chr4.3:83580044-83580063 | None:intergenic | 25.0% |
! | ACCTTATATAAACAGAAACT+TGG | - | chr4.3:83577686-83577705 | None:intergenic | 25.0% |
! | ACTAAAGCATATAAAGATGT+TGG | - | chr4.3:83579415-83579434 | None:intergenic | 25.0% |
! | ACTCACAGTTCTTTAAATAT+AGG | - | chr4.3:83578670-83578689 | None:intergenic | 25.0% |
! | ATAATGAATAACATAGGAGA+TGG | - | chr4.3:83579486-83579505 | None:intergenic | 25.0% |
! | CTTGAAAAATATGTATTGTG+TGG | + | chr4.3:83577741-83577760 | MS.gene060842:intron | 25.0% |
! | GCATGAGATATCAATAAATA+AGG | + | chr4.3:83577553-83577572 | MS.gene060842:intron | 25.0% |
! | TAAATATAGGAAGACTAACA+TGG | - | chr4.3:83578657-83578676 | None:intergenic | 25.0% |
! | TACATTAGTCAATACAGAAA+AGG | - | chr4.3:83580045-83580064 | None:intergenic | 25.0% |
! | TCTCCATATTAATGCAATAT+TGG | - | chr4.3:83577986-83578005 | None:intergenic | 25.0% |
! | TTTGAAAATTGAGGAATTCT+CGG | + | chr4.3:83579038-83579057 | MS.gene060842:intron | 25.0% |
!! | ACATTCTCATTTACCTTTTT+CGG | - | chr4.3:83578240-83578259 | None:intergenic | 25.0% |
!! | AGATCAGATATACTCATTTT+GGG | + | chr4.3:83579648-83579667 | MS.gene060842:intron | 25.0% |
!! | GGATATATCTTTGAAAATTG+AGG | + | chr4.3:83579029-83579048 | MS.gene060842:intron | 25.0% |
!! | TACGTTCATACTTCAAATTT+TGG | + | chr4.3:83578886-83578905 | MS.gene060842:intron | 25.0% |
!! | TTTTGGACAAAAGAATTAAG+AGG | + | chr4.3:83578903-83578922 | MS.gene060842:intron | 25.0% |
!!! | ACTGTGTAGTTTTTTTATGT+TGG | + | chr4.3:83579929-83579948 | MS.gene060842:intron | 25.0% |
!!! | ATGCTTATTTTGATAGGTTA+TGG | + | chr4.3:83578341-83578360 | MS.gene060842:intron | 25.0% |
AAACAACAGATAATGTGTCT+CGG | + | chr4.3:83578927-83578946 | MS.gene060842:intron | 30.0% | |
AAGTTTAAAGGTGAGTATGA+AGG | - | chr4.3:83577439-83577458 | None:intergenic | 30.0% | |
AATCCTATACAGAACTAACA+TGG | - | chr4.3:83577311-83577330 | None:intergenic | 30.0% | |
ACATGTAAACGAAGAAGAAA+AGG | + | chr4.3:83577015-83577034 | MS.gene060842:CDS | 30.0% | |
AGCACTCATTAAATCATTCA+TGG | - | chr4.3:83577089-83577108 | None:intergenic | 30.0% | |
ATGAATGATTTAATGAGTGC+TGG | + | chr4.3:83577088-83577107 | MS.gene060842:CDS | 30.0% | |
ATGGTTACACTATTGCATTT+GGG | + | chr4.3:83578432-83578451 | MS.gene060842:CDS | 30.0% | |
ATTAATATGGAGAGACTTGA+AGG | + | chr4.3:83577993-83578012 | MS.gene060842:intron | 30.0% | |
CGACATTAATGCGTAAAAAT+CGG | - | chr4.3:83577285-83577304 | None:intergenic | 30.0% | |
GAACATGTAAAAACTAGTCA+CGG | + | chr4.3:83579712-83579731 | MS.gene060842:intron | 30.0% | |
GCCAAGTTTCTGTTTATATA+AGG | + | chr4.3:83577682-83577701 | MS.gene060842:intron | 30.0% | |
GTAAAAGAAGTGATGAAGTA+TGG | + | chr4.3:83577764-83577783 | MS.gene060842:intron | 30.0% | |
TAAGTACAGCTATCAATAGA+AGG | - | chr4.3:83579287-83579306 | None:intergenic | 30.0% | |
TAATTGAAACCCAAGAAAAG+AGG | + | chr4.3:83579507-83579526 | MS.gene060842:intron | 30.0% | |
TAGAGTATGAGAATCTAGTT+GGG | + | chr4.3:83580127-83580146 | MS.gene060842:CDS | 30.0% | |
TCGCCAATATTGCATTAATA+TGG | + | chr4.3:83577980-83577999 | MS.gene060842:intron | 30.0% | |
TGAATGATTTAATGAGTGCT+GGG | + | chr4.3:83577089-83577108 | MS.gene060842:CDS | 30.0% | |
TGTAATTGACACGATAAAGT+GGG | - | chr4.3:83579674-83579693 | None:intergenic | 30.0% | |
TGTAGTAGCAGTTAGATAAA+AGG | + | chr4.3:83577512-83577531 | MS.gene060842:intron | 30.0% | |
TGTTACAGATAATGTGAGAT+TGG | + | chr4.3:83577654-83577673 | MS.gene060842:intron | 30.0% | |
TTAATATGGAGAGACTTGAA+GGG | + | chr4.3:83577994-83578013 | MS.gene060842:intron | 30.0% | |
TTCTATTCAAGTATGGAAGA+AGG | - | chr4.3:83579111-83579130 | None:intergenic | 30.0% | |
TTCTCAAGAATGATGTGAAT+TGG | + | chr4.3:83578705-83578724 | MS.gene060842:intron | 30.0% | |
TTGAAGTATGAACGTAAACA+AGG | - | chr4.3:83578882-83578901 | None:intergenic | 30.0% | |
TTGTAATTGACACGATAAAG+TGG | - | chr4.3:83579675-83579694 | None:intergenic | 30.0% | |
! | ATACAAAAGCCTCTTTTCTT+GGG | - | chr4.3:83579519-83579538 | None:intergenic | 30.0% |
! | GAGATCAGATATACTCATTT+TGG | + | chr4.3:83579647-83579666 | MS.gene060842:intron | 30.0% |
! | GATTTTTATCCCTGAATGAA+TGG | - | chr4.3:83580163-83580182 | None:intergenic | 30.0% |
! | TATACAAAAGCCTCTTTTCT+TGG | - | chr4.3:83579520-83579539 | None:intergenic | 30.0% |
!! | GTATTATATTGATGGATTGC+AGG | + | chr4.3:83580062-83580081 | MS.gene060842:intron | 30.0% |
!! | TTTAACAGGGTATTGAAACA+TGG | + | chr4.3:83578604-83578623 | MS.gene060842:intron | 30.0% |
AACAACAGATAATGTGTCTC+GGG | + | chr4.3:83578928-83578947 | MS.gene060842:intron | 35.0% | |
AACCATCCATTGAATCATCT+TGG | - | chr4.3:83578418-83578437 | None:intergenic | 35.0% | |
AACCCAAACATGTTGAATGT+TGG | + | chr4.3:83578200-83578219 | MS.gene060842:CDS | 35.0% | |
AAGTTCTTAGTGAAGCTCAT+AGG | + | chr4.3:83578480-83578499 | MS.gene060842:CDS | 35.0% | |
AGAGTATGAGAATCTAGTTG+GGG | + | chr4.3:83580128-83580147 | MS.gene060842:CDS | 35.0% | |
ATAAACAGAGTTAAGCAGAG+AGG | + | chr4.3:83578116-83578135 | MS.gene060842:CDS | 35.0% | |
ATACAGCTATACCCTATGAA+AGG | - | chr4.3:83577931-83577950 | None:intergenic | 35.0% | |
ATGCTGTAAAATTCTCACCA+TGG | + | chr4.3:83577823-83577842 | MS.gene060842:intron | 35.0% | |
CATCTTGTAGAAGGATCTAT+AGG | - | chr4.3:83579369-83579388 | None:intergenic | 35.0% | |
CTTGAAAGAAAAGAGTAGTC+AGG | + | chr4.3:83579324-83579343 | MS.gene060842:intron | 35.0% | |
GAGTTTCCAAGATGATTCAA+TGG | + | chr4.3:83578409-83578428 | MS.gene060842:CDS | 35.0% | |
GATGGTCATTATCAACCAAT+TGG | - | chr4.3:83579468-83579487 | None:intergenic | 35.0% | |
GATGGTTACACTATTGCATT+TGG | + | chr4.3:83578431-83578450 | MS.gene060842:CDS | 35.0% | |
GATTCTCATACTCTACTTTC+TGG | - | chr4.3:83580122-83580141 | None:intergenic | 35.0% | |
GTAGAGTATGAGAATCTAGT+TGG | + | chr4.3:83580126-83580145 | MS.gene060842:CDS | 35.0% | |
TAAACAGAGTTAAGCAGAGA+GGG | + | chr4.3:83578117-83578136 | MS.gene060842:CDS | 35.0% | |
TAATTTCTGCTCAACTTCTC+AGG | + | chr4.3:83577344-83577363 | MS.gene060842:intron | 35.0% | |
TACAGCTATACCCTATGAAA+GGG | - | chr4.3:83577930-83577949 | None:intergenic | 35.0% | |
TCAGAGGGATATAGTTCAAA+AGG | + | chr4.3:83577792-83577811 | MS.gene060842:intron | 35.0% | |
TGAATGTAACTAACCGAAAC+TGG | - | chr4.3:83576899-83576918 | None:intergenic | 35.0% | |
TGCCAACATTCAACATGTTT+GGG | - | chr4.3:83578205-83578224 | None:intergenic | 35.0% | |
TGCTGTAAAATTCTCACCAT+GGG | + | chr4.3:83577824-83577843 | MS.gene060842:intron | 35.0% | |
TTCCAAGATGATTCAATGGA+TGG | + | chr4.3:83578413-83578432 | MS.gene060842:CDS | 35.0% | |
TTGATAGGTTATGGAGAAGA+TGG | + | chr4.3:83578350-83578369 | MS.gene060842:intron | 35.0% | |
TTGCCAACATTCAACATGTT+TGG | - | chr4.3:83578206-83578225 | None:intergenic | 35.0% | |
TTGGCAATGTCGATATTGTT+AGG | + | chr4.3:83579753-83579772 | MS.gene060842:intron | 35.0% | |
! | AAGTTTATTCCCCAACCTTT+TGG | - | chr4.3:83576830-83576849 | None:intergenic | 35.0% |
! | ACACTATTGCATTTGGGATA+AGG | + | chr4.3:83578438-83578457 | MS.gene060842:CDS | 35.0% |
! | AGAAGGAATTGATAACCTGT+GGG | - | chr4.3:83579270-83579289 | None:intergenic | 35.0% |
! | GAATGATGTGAATTGGTGTT+TGG | + | chr4.3:83578712-83578731 | MS.gene060842:intron | 35.0% |
! | TAGAAGGAATTGATAACCTG+TGG | - | chr4.3:83579271-83579290 | None:intergenic | 35.0% |
!! | ACTCTCAACTAAGTACTGAT+AGG | - | chr4.3:83579233-83579252 | None:intergenic | 35.0% |
!! | AGTACTTAGTTGAGAGTATC+CGG | + | chr4.3:83579236-83579255 | MS.gene060842:CDS | 35.0% |
!! | TGTCCATGTTAGTTCTGTAT+AGG | + | chr4.3:83577305-83577324 | MS.gene060842:intron | 35.0% |
!! | TTGCTTATCGCTTGTTTCTA+AGG | - | chr4.3:83578985-83579004 | None:intergenic | 35.0% |
!!! | GGATGTTGCTTTTAGAATCT+TGG | + | chr4.3:83578088-83578107 | MS.gene060842:CDS | 35.0% |
AAATGTCAAGAAAGCCGTGA+TGG | + | chr4.3:83580014-83580033 | MS.gene060842:intron | 40.0% | |
AAGGATCTATAGGTCTGTTC+AGG | - | chr4.3:83579359-83579378 | None:intergenic | 40.0% | |
AAGTGGTTCCAACCTTTCAT+TGG | - | chr4.3:83577855-83577874 | None:intergenic | 40.0% | |
AATGTCAAGAAAGCCGTGAT+GGG | + | chr4.3:83580015-83580034 | MS.gene060842:intron | 40.0% | |
ACAACAGATAATGTGTCTCG+GGG | + | chr4.3:83578929-83578948 | MS.gene060842:intron | 40.0% | |
ACAGTTATGTGAGTTTCAGG+TGG | + | chr4.3:83579812-83579831 | MS.gene060842:intron | 40.0% | |
ACATCAAGATGCTTCATTCC+AGG | - | chr4.3:83577394-83577413 | None:intergenic | 40.0% | |
ACGTGGTTCACGAGTTAATT+TGG | - | chr4.3:83579068-83579087 | None:intergenic | 40.0% | |
AGAAGTGATGAAGTATGGAC+TGG | + | chr4.3:83577769-83577788 | MS.gene060842:intron | 40.0% | |
AGATCCTTCTACAAGATGTC+CGG | + | chr4.3:83579371-83579390 | MS.gene060842:intron | 40.0% | |
AGATGCTTCATTCCAGGAAA+AGG | - | chr4.3:83577388-83577407 | None:intergenic | 40.0% | |
AGATTTGTCCTATGTTGCAC+CGG | + | chr4.3:83577191-83577210 | MS.gene060842:intron | 40.0% | |
AGTCATACAGTCCCTTTCAT+AGG | + | chr4.3:83577916-83577935 | MS.gene060842:intron | 40.0% | |
ATCGACATTGCCAATTAAGC+AGG | - | chr4.3:83579747-83579766 | None:intergenic | 40.0% | |
ATGAAAGGGACTGTATGACT+AGG | - | chr4.3:83577916-83577935 | None:intergenic | 40.0% | |
ATGTAACTAACCGAAACTGG+TGG | - | chr4.3:83576896-83576915 | None:intergenic | 40.0% | |
ATTACTTCGAGCTTTCGTGA+AGG | + | chr4.3:83578274-83578293 | MS.gene060842:intron | 40.0% | |
CAATGTCGATATTGTTAGGC+TGG | + | chr4.3:83579757-83579776 | MS.gene060842:intron | 40.0% | |
CATCAATGATTGCTGATGCA+GGG | + | chr4.3:83580094-83580113 | MS.gene060842:CDS | 40.0% | |
CTCACAGTTATGTGAGTTTC+AGG | + | chr4.3:83579809-83579828 | MS.gene060842:intron | 40.0% | |
CTGAAACTCACATAACTGTG+AGG | - | chr4.3:83579811-83579830 | None:intergenic | 40.0% | |
GAATAGTCACCAAAAGGTTG+GGG | + | chr4.3:83576818-83576837 | MS.gene060842:CDS | 40.0% | |
GACTAACATGGCTTAGTTCA+AGG | - | chr4.3:83578645-83578664 | None:intergenic | 40.0% | |
GAGTATGAGAATCTAGTTGG+GGG | + | chr4.3:83580129-83580148 | MS.gene060842:CDS | 40.0% | |
GCTGTAAAATTCTCACCATG+GGG | + | chr4.3:83577825-83577844 | MS.gene060842:intron | 40.0% | |
GGAAGAAGGCTATGATTCTA+TGG | - | chr4.3:83579097-83579116 | None:intergenic | 40.0% | |
GGAATAGTCACCAAAAGGTT+GGG | + | chr4.3:83576817-83576836 | MS.gene060842:CDS | 40.0% | |
GTCATACAGTCCCTTTCATA+GGG | + | chr4.3:83577917-83577936 | MS.gene060842:intron | 40.0% | |
GTCATGTTTGTATCCTACAC+CGG | - | chr4.3:83577213-83577232 | None:intergenic | 40.0% | |
TCAATTTCACAATGCTCCAC+AGG | - | chr4.3:83576958-83576977 | None:intergenic | 40.0% | |
TCCAGGAAAAGGATTCAACA+TGG | - | chr4.3:83577377-83577396 | None:intergenic | 40.0% | |
TCTATAGGTCTGTTCAGGAA+TGG | - | chr4.3:83579354-83579373 | None:intergenic | 40.0% | |
TCTGATCTCAACATTGTCTG+CGG | - | chr4.3:83579636-83579655 | None:intergenic | 40.0% | |
TCTTAGTGAAGCTCATAGGT+TGG | + | chr4.3:83578484-83578503 | MS.gene060842:intron | 40.0% | |
TGATTCTATGGCACTTTACG+TGG | - | chr4.3:83579085-83579104 | None:intergenic | 40.0% | |
TGCATAGACTGTGGAAAGAA+AGG | + | chr4.3:83577113-83577132 | MS.gene060842:CDS | 40.0% | |
TGTTACTCTTCTTCTCTTGC+AGG | + | chr4.3:83579143-83579162 | MS.gene060842:intron | 40.0% | |
TGTTGAATGTTGGCAAACAG+CGG | + | chr4.3:83578210-83578229 | MS.gene060842:CDS | 40.0% | |
TTCTCAGTTATTCCACGCAT+AGG | + | chr4.3:83579181-83579200 | MS.gene060842:CDS | 40.0% | |
! | AAAGCGCTAGAGAATTGTGT+GGG | + | chr4.3:83579003-83579022 | MS.gene060842:intron | 40.0% |
! | AAGGAATTGATAACCTGTGG+GGG | - | chr4.3:83579268-83579287 | None:intergenic | 40.0% |
! | AGAAGATGGTTCCCTTGTTT+GGG | + | chr4.3:83578364-83578383 | MS.gene060842:CDS | 40.0% |
! | CTTTGGGAATAGTCACCAAA+AGG | + | chr4.3:83576812-83576831 | MS.gene060842:CDS | 40.0% |
! | GAAGGAATTGATAACCTGTG+GGG | - | chr4.3:83579269-83579288 | None:intergenic | 40.0% |
! | GGTTCACGAGTTAATTTGGT+TGG | - | chr4.3:83579064-83579083 | None:intergenic | 40.0% |
! | GTGAATAAAAGCGTAGAGTG+AGG | + | chr4.3:83579433-83579452 | MS.gene060842:intron | 40.0% |
! | TCCATGTTGAATCCTTTTCC+TGG | + | chr4.3:83577373-83577392 | MS.gene060842:CDS | 40.0% |
! | TGGAATGAAGCATCTTGATG+TGG | + | chr4.3:83577393-83577412 | MS.gene060842:CDS | 40.0% |
!! | AACAGGGTATTGAAACATGG+CGG | + | chr4.3:83578607-83578626 | MS.gene060842:intron | 40.0% |
!! | CGGTTTTATCGATGTTCTAG+AGG | + | chr4.3:83578148-83578167 | MS.gene060842:CDS | 40.0% |
AAAACTAGTCACGGTCCGTA+AGG | + | chr4.3:83579721-83579740 | MS.gene060842:intron | 45.0% | |
AAAGCGTAGAGTGAGGAAGA+TGG | + | chr4.3:83579440-83579459 | MS.gene060842:intron | 45.0% | |
AAAGGTTGGAACCACTTGTG+AGG | + | chr4.3:83577858-83577877 | MS.gene060842:intron | 45.0% | |
AAGCGTAGAGTGAGGAAGAT+GGG | + | chr4.3:83579441-83579460 | MS.gene060842:intron | 45.0% | |
AAGGTTGGAACCACTTGTGA+GGG | + | chr4.3:83577859-83577878 | MS.gene060842:intron | 45.0% | |
ACAGCTGAATGTGGAAGACT+GGG | - | chr4.3:83579560-83579579 | None:intergenic | 45.0% | |
AGAATGTAGAAGCCTGGAAG+TGG | - | chr4.3:83576869-83576888 | None:intergenic | 45.0% | |
ATTTCCCTCCACCCAAACAA+GGG | - | chr4.3:83578378-83578397 | None:intergenic | 45.0% | |
CAACAGATAATGTGTCTCGG+GGG | + | chr4.3:83578930-83578949 | MS.gene060842:intron | 45.0% | |
CACATTCAGCTGTAAGAGGA+AGG | + | chr4.3:83579567-83579586 | MS.gene060842:intron | 45.0% | |
CACGGCTTTCTTGACATTTG+AGG | - | chr4.3:83580013-83580032 | None:intergenic | 45.0% | |
CAGAAAAGGGTAACCCATCA+CGG | - | chr4.3:83580031-83580050 | None:intergenic | 45.0% | |
CAGCATTATGTTCCACTTCC+AGG | + | chr4.3:83576854-83576873 | MS.gene060842:CDS | 45.0% | |
CATGGCTTAGTTCAAGGCAT+AGG | - | chr4.3:83578639-83578658 | None:intergenic | 45.0% | |
CTGGAAGTGGAACATAATGC+TGG | - | chr4.3:83576856-83576875 | None:intergenic | 45.0% | |
CTTCCACATTCAGCTGTAAG+AGG | + | chr4.3:83579563-83579582 | MS.gene060842:intron | 45.0% | |
CTTCCTCTTACAGCTGAATG+TGG | - | chr4.3:83579569-83579588 | None:intergenic | 45.0% | |
GAGAAGATGGTTCCCTTGTT+TGG | + | chr4.3:83578363-83578382 | MS.gene060842:CDS | 45.0% | |
GAGTGGTTGCCATTCATTCA+GGG | + | chr4.3:83580151-83580170 | MS.gene060842:CDS | 45.0% | |
GCAGTGAACTGAACTGTATC+CGG | - | chr4.3:83579393-83579412 | None:intergenic | 45.0% | |
GCATCAATGATTGCTGATGC+AGG | + | chr4.3:83580093-83580112 | MS.gene060842:CDS | 45.0% | |
GCTAGAGAATTGTGTGGGAA+AGG | + | chr4.3:83579008-83579027 | MS.gene060842:intron | 45.0% | |
GGGAATAGTCACCAAAAGGT+TGG | + | chr4.3:83576816-83576835 | MS.gene060842:CDS | 45.0% | |
GTAAAATTCTCACCATGGGG+AGG | + | chr4.3:83577828-83577847 | MS.gene060842:intron | 45.0% | |
GTATCCGGACATCTTGTAGA+AGG | - | chr4.3:83579378-83579397 | None:intergenic | 45.0% | |
GTTGAATGTTGGCAAACAGC+GGG | + | chr4.3:83578211-83578230 | MS.gene060842:CDS | 45.0% | |
TACAGCTGAATGTGGAAGAC+TGG | - | chr4.3:83579561-83579580 | None:intergenic | 45.0% | |
TATTCCACGCATAGGAGAGA+TGG | + | chr4.3:83579189-83579208 | MS.gene060842:CDS | 45.0% | |
TGCCAATTAAGCAGGCCTTA+CGG | - | chr4.3:83579739-83579758 | None:intergenic | 45.0% | |
TTAGGCTGGACATCTTCATC+CGG | + | chr4.3:83579771-83579790 | MS.gene060842:intron | 45.0% | |
! | ATGAAGCATCTTGATGTGGC+TGG | + | chr4.3:83577397-83577416 | MS.gene060842:CDS | 45.0% |
! | CAAAGCGCTAGAGAATTGTG+TGG | + | chr4.3:83579002-83579021 | MS.gene060842:intron | 45.0% |
!! | ATGAAGTATGGACTGGTCAG+AGG | + | chr4.3:83577776-83577795 | MS.gene060842:intron | 45.0% |
!! | TGAAGTATGGACTGGTCAGA+GGG | + | chr4.3:83577777-83577796 | MS.gene060842:intron | 45.0% |
!! | AATTAAAAATTTAAGTAAAT+TGG | + | chr4.3:83577712-83577731 | MS.gene060842:intron | 5.0% |
!!! | AGTTTTTTTTTTTTTTTTTT+AGG | - | chr4.3:83579862-83579881 | None:intergenic | 5.0% |
AAGCAGAGAGGGCTTCAAGA+CGG | + | chr4.3:83578128-83578147 | MS.gene060842:CDS | 50.0% | |
AAGCATCTTGATGTGGCTGG+TGG | + | chr4.3:83577400-83577419 | MS.gene060842:CDS | 50.0% | |
AGTCTAGAGACCCTCACAAG+TGG | - | chr4.3:83577872-83577891 | None:intergenic | 50.0% | |
ATCCTACACCGGTGCAACAT+AGG | - | chr4.3:83577202-83577221 | None:intergenic | 50.0% | |
CAGCTGAATGTGGAAGACTG+GGG | - | chr4.3:83579559-83579578 | None:intergenic | 50.0% | |
CATTCTCACGCCACCAGTTT+CGG | + | chr4.3:83576883-83576902 | MS.gene060842:CDS | 50.0% | |
CATTTCCCTCCACCCAAACA+AGG | - | chr4.3:83578379-83578398 | None:intergenic | 50.0% | |
CTCACATAACTGTGAGGTCC+CGG | - | chr4.3:83579805-83579824 | None:intergenic | 50.0% | |
GGACTGTATGACTAGGACGA+TGG | - | chr4.3:83577909-83577928 | None:intergenic | 50.0% | |
GGAGTGGTTGCCATTCATTC+AGG | + | chr4.3:83580150-83580169 | MS.gene060842:CDS | 50.0% | |
GTCCGTAAGGCCTGCTTAAT+TGG | + | chr4.3:83579734-83579753 | MS.gene060842:intron | 50.0% | |
GTGAGGAAGATGGGTCCAAT+TGG | + | chr4.3:83579450-83579469 | MS.gene060842:intron | 50.0% | |
TAGGCTGGACATCTTCATCC+GGG | + | chr4.3:83579772-83579791 | MS.gene060842:intron | 50.0% | |
TCACATAACTGTGAGGTCCC+GGG | - | chr4.3:83579804-83579823 | None:intergenic | 50.0% | |
TCTTCATCCGGGTTCAAACC+CGG | + | chr4.3:83579783-83579802 | MS.gene060842:intron | 50.0% | |
TGAGAATCTAGTTGGGGGAG+TGG | + | chr4.3:83580134-83580153 | MS.gene060842:CDS | 50.0% | |
! | AGATGGTTCCCTTGTTTGGG+TGG | + | chr4.3:83578367-83578386 | MS.gene060842:CDS | 50.0% |
! | CGAAGAAGAAAAGGCACGCA+TGG | + | chr4.3:83577024-83577043 | MS.gene060842:CDS | 50.0% |
! | GAAGAAAAGGCACGCATGGT+TGG | + | chr4.3:83577028-83577047 | MS.gene060842:CDS | 50.0% |
CCATGGGGAGGTCCAATGAA+AGG | + | chr4.3:83577840-83577859 | MS.gene060842:intron | 55.0% | |
CCTTTCATTGGACCTCCCCA+TGG | - | chr4.3:83577843-83577862 | None:intergenic | 55.0% | |
CGCATAGGAGAGATGGTTGC+TGG | + | chr4.3:83579196-83579215 | MS.gene060842:CDS | 55.0% | |
CTTCATCCGGGTTCAAACCC+GGG | + | chr4.3:83579784-83579803 | MS.gene060842:intron | 55.0% | |
GCAACCATCTCTCCTATGCG+TGG | - | chr4.3:83579196-83579215 | None:intergenic | 55.0% | |
GGCGTGAGAATGTAGAAGCC+TGG | - | chr4.3:83576875-83576894 | None:intergenic | 55.0% | |
GGGGAGGTCCAATGAAAGGT+TGG | + | chr4.3:83577844-83577863 | MS.gene060842:intron | 55.0% | |
GTGCTGGGTTGCATAGACTG+TGG | + | chr4.3:83577104-83577123 | MS.gene060842:CDS | 55.0% | |
TAACCTGTGGGGGAAAACGC+CGG | - | chr4.3:83579258-83579277 | None:intergenic | 55.0% | |
! | GGTTCCCTTGTTTGGGTGGA+GGG | + | chr4.3:83578371-83578390 | MS.gene060842:CDS | 55.0% |
! | GTCCTATGTTGCACCGGTGT+AGG | + | chr4.3:83577197-83577216 | MS.gene060842:intron | 55.0% |
! | TGGTTCCCTTGTTTGGGTGG+AGG | + | chr4.3:83578370-83578389 | MS.gene060842:CDS | 55.0% |
!! | AAACAGCGGGCTGCCGAAAA+AGG | + | chr4.3:83578224-83578243 | MS.gene060842:CDS | 55.0% |
!! | GGGTATTGAAACATGGCGGC+AGG | + | chr4.3:83578611-83578630 | MS.gene060842:intron | 55.0% |
CTTGATGTGGCTGGTGGCAC+AGG | + | chr4.3:83577406-83577425 | MS.gene060842:CDS | 60.0% | |
TGAGGTCCCGGGTTTGAACC+CGG | - | chr4.3:83579793-83579812 | None:intergenic | 60.0% | |
! | TATCCGGCGTTTTCCCCCAC+AGG | + | chr4.3:83579252-83579271 | MS.gene060842:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 83576808 | 83580185 | 83576808 | ID=MS.gene060842 |
chr4.3 | mRNA | 83576808 | 83580185 | 83576808 | ID=MS.gene060842.t1;Parent=MS.gene060842 |
chr4.3 | exon | 83576808 | 83576904 | 83576808 | ID=MS.gene060842.t1.exon1;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83576808 | 83576904 | 83576808 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83577008 | 83577134 | 83577008 | ID=MS.gene060842.t1.exon2;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83577008 | 83577134 | 83577008 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83577366 | 83577427 | 83577366 | ID=MS.gene060842.t1.exon3;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83577366 | 83577427 | 83577366 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83578087 | 83578245 | 83578087 | ID=MS.gene060842.t1.exon4;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83578087 | 83578245 | 83578087 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83578357 | 83578501 | 83578357 | ID=MS.gene060842.t1.exon5;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83578357 | 83578501 | 83578357 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83578612 | 83578683 | 83578612 | ID=MS.gene060842.t1.exon6;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83578612 | 83578683 | 83578612 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83579165 | 83579273 | 83579165 | ID=MS.gene060842.t1.exon7;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83579165 | 83579273 | 83579165 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
chr4.3 | exon | 83580084 | 83580185 | 83580084 | ID=MS.gene060842.t1.exon8;Parent=MS.gene060842.t1 |
chr4.3 | CDS | 83580084 | 83580185 | 83580084 | ID=cds.MS.gene060842.t1;Parent=MS.gene060842.t1 |
Gene Sequence |
Protein sequence |