AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061826

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061826.t1 MTR_7g098930 95.918 490 19 1 1 489 1 490 0.0 933
MS.gene061826.t1 MTR_7g113340 90.389 489 47 0 1 489 1 489 0.0 889
MS.gene061826.t1 MTR_1g045550 73.878 490 126 2 1 489 1 489 0.0 747
MS.gene061826.t1 MTR_1g079760 74.233 489 120 3 1 485 1 487 0.0 716
MS.gene061826.t1 MTR_3g463730 67.117 444 141 4 41 482 8 448 0.0 588
MS.gene061826.t1 MTR_7g115050 28.101 395 231 14 103 477 86 447 1.03e-21 98.2
MS.gene061826.t1 MTR_8g074750 26.889 450 269 15 47 472 30 443 3.44e-19 90.5
MS.gene061826.t1 MTR_1g036410 25.277 451 278 12 47 472 24 440 4.80e-18 87.0
MS.gene061826.t1 MTR_7g069640 26.415 371 228 11 123 485 129 462 2.69e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061826.t1 AT4G28700 79.210 481 95 2 2 477 3 483 0.0 748
MS.gene061826.t1 AT4G13510 73.045 486 127 3 5 489 2 484 0.0 744
MS.gene061826.t1 AT3G24290 75.052 477 116 2 3 479 4 477 0.0 734
MS.gene061826.t1 AT3G24300 73.849 478 121 3 3 479 4 478 0.0 726
MS.gene061826.t1 AT1G64780 74.892 462 110 4 27 484 32 491 0.0 715
MS.gene061826.t1 AT2G38290 25.918 463 291 12 47 488 20 451 8.40e-16 80.1
MS.gene061826.t1 AT2G38290 27.869 366 215 12 135 488 7 335 2.53e-13 71.6

Find 110 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACATTTGGTTCAAATTT+TGG 0.087819 7.4:+11552704 MS.gene061826:CDS
TATTTCAGTTGCACGTTTCT+TGG 0.217407 7.4:-11552886 None:intergenic
CAATATGTTAAAGAAGTTTA+TGG 0.222489 7.4:+11552624 MS.gene061826:CDS
CAATAGTTGCGCATTGGTTT+TGG 0.263486 7.4:+11551959 MS.gene061826:CDS
GCAGCTCTCACTACTTTGTT+TGG 0.267595 7.4:+11552342 MS.gene061826:CDS
TTCGGGTTTGCCTTTGCTTT+CGG 0.288803 7.4:+11551736 MS.gene061826:CDS
TAGTGGTACTTTAGTTGTTA+TGG 0.289328 7.4:+11552170 MS.gene061826:CDS
TGATCAAATCTACCAATTCT+TGG 0.296521 7.4:-11552117 None:intergenic
GGGAGGTGGTGGAAGATTAT+TGG 0.298602 7.4:+11552680 MS.gene061826:CDS
CGTTTCTTGGAACGTCCTTC+AGG 0.301303 7.4:-11552873 None:intergenic
TGTTTGGGTGAGTGTTACTA+TGG 0.317455 7.4:+11552734 MS.gene061826:CDS
GATGTTTGTAATGGTTTGTT+AGG 0.319352 7.4:+11552399 MS.gene061826:CDS
CATTTAGTTGGTGCAGTTGC+TGG 0.322498 7.4:+11552069 MS.gene061826:CDS
CTTGAAGCTGCTCAACTTCA+TGG 0.324413 7.4:+11552552 MS.gene061826:CDS
AAGATTATTGGCTGCACATT+TGG 0.325570 7.4:+11552692 MS.gene061826:CDS
TATGGTCAATGGAGTGCTAT+TGG 0.327941 7.4:+11552282 MS.gene061826:CDS
CAAAACCAATGCGCAACTAT+TGG 0.341333 7.4:-11551958 None:intergenic
AGGCCTTATGGTTTGTTGTT+GGG 0.343846 7.4:+11552660 MS.gene061826:CDS
GGTTCACCAGATAGGCCTTA+TGG 0.344593 7.4:+11552648 MS.gene061826:CDS
GCTTTCGGCACACCTTCTAA+TGG 0.348115 7.4:+11551751 MS.gene061826:CDS
TGTGGTGTTGTTCATTTAGT+TGG 0.354549 7.4:+11552057 MS.gene061826:CDS
AACAAACCATAAGGCCTATC+TGG 0.363039 7.4:-11552654 None:intergenic
AGTGGTACTTTAGTTGTTAT+GGG 0.366370 7.4:+11552171 MS.gene061826:CDS
CAGCTCTCACTACTTTGTTT+GGG 0.373878 7.4:+11552343 MS.gene061826:CDS
AACGTTTGCAAACAGGTCAT+TGG 0.375052 7.4:+11552367 MS.gene061826:CDS
TTGCGGATTTGTTGCCGCTT+GGG 0.381161 7.4:+11552479 MS.gene061826:CDS
GAAGCCGTTGCAGATGTATT+CGG 0.389455 7.4:-11551515 None:intergenic
AACGTCCTTCAGGCTCTTCA+TGG 0.389542 7.4:-11552863 None:intergenic
TTACTTTGGTTTGGTTGGTA+TGG 0.390915 7.4:+11552201 MS.gene061826:CDS
ATTGGTTAACATAATATTCA+TGG 0.394480 7.4:-11551674 None:intergenic
TGAAGAAGAGATGGCTGGAT+TGG 0.397610 7.4:+11552806 MS.gene061826:CDS
TAGGCCTTATGGTTTGTTGT+TGG 0.399686 7.4:+11552659 MS.gene061826:CDS
GTTGTTCTGTTGTTGATCCA+TGG 0.400973 7.4:+11552445 MS.gene061826:CDS
TTCATGGTGGTTGTGGCACA+TGG 0.403730 7.4:+11552568 MS.gene061826:CDS
ATCATCATATTGAAATTTCT+CGG 0.404442 7.4:-11552526 None:intergenic
TTTGGGAAACGTTTGCAAAC+AGG 0.404967 7.4:+11552360 MS.gene061826:CDS
ACACCTTCTAATGGTTTCAT+TGG 0.405120 7.4:+11551760 MS.gene061826:CDS
GGTTTGTTGTTGGGAGGTGG+TGG 0.412513 7.4:+11552669 MS.gene061826:CDS
TTTGCGGATTTGTTGCCGCT+TGG 0.413929 7.4:+11552478 MS.gene061826:CDS
TTTCCAATGAAACCATTAGA+AGG 0.426927 7.4:-11551763 None:intergenic
GATGTATTCGGCAGCGGCTG+TGG 0.428663 7.4:-11551503 None:intergenic
TATGGTTTGTTGTTGGGAGG+TGG 0.435507 7.4:+11552666 MS.gene061826:CDS
TTTATGGTGGTTCACCAGAT+AGG 0.437334 7.4:+11552640 MS.gene061826:CDS
TTGATTGAAGGACCAAGAAT+TGG 0.443702 7.4:+11552105 MS.gene061826:CDS
GCTCAACTTCATGGTGGTTG+TGG 0.443914 7.4:+11552561 MS.gene061826:CDS
GGTGAAAGTGGTAATTACTA+TGG 0.445774 7.4:+11552264 MS.gene061826:CDS
ATGGTCAATGGAGTGCTATT+GGG 0.445910 7.4:+11552283 MS.gene061826:CDS
AACTATTGGATAAACTAAAC+CGG 0.447985 7.4:-11551944 None:intergenic
TAGATTTGATCATGAAGGTA+AGG 0.457000 7.4:+11552128 MS.gene061826:CDS
TGCTGATGGTTGGGGTAGTC+CGG 0.458442 7.4:+11551984 MS.gene061826:CDS
TTCATAAATTGAATTTGCTT+AGG 0.462409 7.4:+11552775 MS.gene061826:CDS
TTGTTCTGTTGTTGATCCAT+GGG 0.462585 7.4:+11552446 MS.gene061826:CDS
CATGGTGGTTGTGGCACATG+GGG 0.465415 7.4:+11552570 MS.gene061826:CDS
GTGGAGGTCGGAGGCGGAGC+AGG 0.470016 7.4:-11551455 None:intergenic
TTTAACTAGCCATGGTGGAT+TGG 0.471431 7.4:+11552830 MS.gene061826:CDS
CCATGGGCTGCAATAGTTTG+CGG 0.479193 7.4:+11552462 MS.gene061826:CDS
GCTGTGACAACTACATTGGC+TGG 0.480039 7.4:+11552312 MS.gene061826:CDS
GTGGTAATTACTATGGTCAA+TGG 0.487253 7.4:+11552271 MS.gene061826:CDS
AATGTTACTGATGTTTGTAA+TGG 0.492106 7.4:+11552390 MS.gene061826:CDS
GAGAGCGTGGAGGTCGGAGG+CGG 0.493293 7.4:-11551461 None:intergenic
GTCAATGAATTTGTTTGCAA+TGG 0.501078 7.4:-11551542 None:intergenic
AATGTTCTTGATGCCGCCAC+TGG 0.502684 7.4:+11551694 MS.gene061826:CDS
GTTTGTAATGGTTTGTTAGG+TGG 0.503528 7.4:+11552402 MS.gene061826:CDS
ATGGTTGGGGTAGTCCGGCT+CGG 0.503769 7.4:+11551989 MS.gene061826:CDS
ATTGGTAGATTTGATCATGA+AGG 0.517699 7.4:+11552123 MS.gene061826:CDS
TGGAGTTTGCACCGCTGCCG+AGG 0.519424 7.4:-11551483 None:intergenic
CCTCCCAACAACAAACCATA+AGG 0.520192 7.4:-11552663 None:intergenic
TCCGACCTCCACGCTCTCCT+CGG 0.524571 7.4:+11551466 MS.gene061826:CDS
TCATGGTGGTTGTGGCACAT+GGG 0.525963 7.4:+11552569 MS.gene061826:CDS
CCTTATGGTTTGTTGTTGGG+AGG 0.526212 7.4:+11552663 MS.gene061826:CDS
GTTCTTGATGCCGCCACTGG+CGG 0.529079 7.4:+11551697 MS.gene061826:CDS
CTCCACGCTCTCCTCGGCAG+CGG 0.535645 7.4:+11551472 MS.gene061826:CDS
AACGTGCAACTGAAATATGA+AGG 0.545110 7.4:+11552892 MS.gene061826:CDS
CACCGCTGCCGAGGAGAGCG+TGG 0.546466 7.4:-11551474 None:intergenic
TTTATCCAATAGTTGCGCAT+TGG 0.550357 7.4:+11551953 MS.gene061826:CDS
CCGCAAACTATTGCAGCCCA+TGG 0.552340 7.4:-11552462 None:intergenic
CAAGGTAAGCGGAAAAGAGA+AGG 0.554067 7.4:-11551591 None:intergenic
TCACATGAAGAAGAGATGGC+TGG 0.556577 7.4:+11552801 MS.gene061826:CDS
AACGGAACCAGCGCAAAGCA+TGG 0.565138 7.4:-11551638 None:intergenic
CATGGCAAAACCGAGTTGCA+TGG 0.567366 7.4:-11551620 None:intergenic
GGATTGGATTTAACTAGCCA+TGG 0.567834 7.4:+11552822 MS.gene061826:CDS
GAGTTCACATGAAGAAGAGA+TGG 0.574355 7.4:+11552797 MS.gene061826:CDS
GTTGCAGATGTATTCGGCAG+CGG 0.576245 7.4:-11551509 None:intergenic
GTTTGGGTGAGTGTTACTAT+GGG 0.584751 7.4:+11552735 MS.gene061826:CDS
GCCGAGGAGAGCGTGGAGGT+CGG 0.587689 7.4:-11551467 None:intergenic
GAGGAGAGCGTGGAGGTCGG+AGG 0.594655 7.4:-11551464 None:intergenic
AGATTTGATCATGAAGGTAA+GGG 0.600041 7.4:+11552129 MS.gene061826:CDS
TATGTTAAAGAAGTTTATGG+TGG 0.601613 7.4:+11552627 MS.gene061826:CDS
AAGATGTTAAGAAAAGAACC+AGG 0.604124 7.4:-11552231 None:intergenic
GTAGGTGTTGTCAACAGCGT+AGG 0.604804 7.4:-11551569 None:intergenic
GACAGCTGTGACAACTACAT+TGG 0.614425 7.4:+11552308 MS.gene061826:CDS
TGAAGTTGAGCAGCTTCAAG+AGG 0.615625 7.4:-11552549 None:intergenic
AGAAGGTGTGCCGAAAGCAA+AGG 0.615821 7.4:-11551746 None:intergenic
GGTAAGGGTGTTTCAATGAG+AGG 0.619487 7.4:+11552144 MS.gene061826:CDS
GCTGCAGCAGGAATCACTAG+TGG 0.625263 7.4:+11551865 MS.gene061826:CDS
CCATAATCAAAAGACTGAGA+AGG 0.626299 7.4:-11551811 None:intergenic
TTGGATTTAACTAGCCATGG+TGG 0.626409 7.4:+11552825 MS.gene061826:CDS
GTTTCAATGAGAGGACATAG+TGG 0.631638 7.4:+11552153 MS.gene061826:CDS
GTAAGCGGAAAAGAGAAGGT+AGG 0.633933 7.4:-11551587 None:intergenic
AACACTCACCCAAACAACAA+TGG 0.638562 7.4:-11552727 None:intergenic
GTCAATGGAGTGCTATTGGG+AGG 0.640296 7.4:+11552286 MS.gene061826:CDS
AGTGGCGGCATCAAGAACAT+TGG 0.640439 7.4:-11551692 None:intergenic
ATGGTGGTTGTGGCACATGG+GGG 0.642261 7.4:+11552571 MS.gene061826:CDS
AGATGTTAAGAAAAGAACCA+GGG 0.643491 7.4:-11552230 None:intergenic
CAGTACCATGAAGAGCCTGA+AGG 0.656635 7.4:+11552858 MS.gene061826:CDS
GAAGCTGCTCAACTTCATGG+TGG 0.677955 7.4:+11552555 MS.gene061826:CDS
GCATCCAATCAAAACCCAAG+CGG 0.689101 7.4:-11552493 None:intergenic
CGCTGCCGAGGAGAGCGTGG+AGG 0.689136 7.4:-11551471 None:intergenic
ACTGATAAGCCAATCCACCA+TGG 0.694933 7.4:-11552839 None:intergenic
GCTGCCGAATACATCTGCAA+CGG 0.700251 7.4:+11551511 MS.gene061826:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATGAAGAATAAAAAACA+AGG - chr7.4:11552763-11552782 None:intergenic 15.0%
!!! ATTTATTCATCTTTTTTAAC+CGG + chr7.4:11551925-11551944 MS.gene061826:CDS 15.0%
!! ATCATCATATTGAAATTTCT+CGG - chr7.4:11552529-11552548 None:intergenic 20.0%
!! ATTGGTTAACATAATATTCA+TGG - chr7.4:11551677-11551696 None:intergenic 20.0%
!! CAATATGTTAAAGAAGTTTA+TGG + chr7.4:11552624-11552643 MS.gene061826:CDS 20.0%
!! CTTAACATCTTAAAAACTTA+TGG + chr7.4:11552243-11552262 MS.gene061826:CDS 20.0%
!!! GCATTTTTTTCTATATTTTC+GGG + chr7.4:11551719-11551738 MS.gene061826:CDS 20.0%
!!! GGCATTTTTTTCTATATTTT+CGG + chr7.4:11551718-11551737 MS.gene061826:CDS 20.0%
!!! TTCATAAATTGAATTTGCTT+AGG + chr7.4:11552775-11552794 MS.gene061826:CDS 20.0%
! AACTATTGGATAAACTAAAC+CGG - chr7.4:11551947-11551966 None:intergenic 25.0%
! AATGTTACTGATGTTTGTAA+TGG + chr7.4:11552390-11552409 MS.gene061826:CDS 25.0%
! TATGTTAAAGAAGTTTATGG+TGG + chr7.4:11552627-11552646 MS.gene061826:CDS 25.0%
! TTAAAAACTTATGGTGAAAG+TGG + chr7.4:11552252-11552271 MS.gene061826:CDS 25.0%
!! ATGGATATTTTCTGTATCAA+TGG + chr7.4:11551830-11551849 MS.gene061826:CDS 25.0%
!! CATAATATTCATGGTGTTTT+TGG - chr7.4:11551668-11551687 None:intergenic 25.0%
!! TGGATATTTTCTGTATCAAT+GGG + chr7.4:11551831-11551850 MS.gene061826:CDS 25.0%
!! TTATGGGAACATTTTTACTT+TGG + chr7.4:11552187-11552206 MS.gene061826:CDS 25.0%
!!! TTCATTGGAAAACACTTTTT+CGG + chr7.4:11551775-11551794 MS.gene061826:CDS 25.0%
AAGATGTTAAGAAAAGAACC+AGG - chr7.4:11552234-11552253 None:intergenic 30.0%
AGATGTTAAGAAAAGAACCA+GGG - chr7.4:11552233-11552252 None:intergenic 30.0%
AGATTTGATCATGAAGGTAA+GGG + chr7.4:11552129-11552148 MS.gene061826:CDS 30.0%
AGTGGTACTTTAGTTGTTAT+GGG + chr7.4:11552171-11552190 MS.gene061826:CDS 30.0%
ATTGGTAGATTTGATCATGA+AGG + chr7.4:11552123-11552142 MS.gene061826:CDS 30.0%
TAGATTTGATCATGAAGGTA+AGG + chr7.4:11552128-11552147 MS.gene061826:CDS 30.0%
TAGTGGTACTTTAGTTGTTA+TGG + chr7.4:11552170-11552189 MS.gene061826:CDS 30.0%
TGATCAAATCTACCAATTCT+TGG - chr7.4:11552120-11552139 None:intergenic 30.0%
TTTCCAATGAAACCATTAGA+AGG - chr7.4:11551766-11551785 None:intergenic 30.0%
! GGAACATTTTTACTTTGGTT+TGG + chr7.4:11552192-11552211 MS.gene061826:CDS 30.0%
! GTCAATGAATTTGTTTGCAA+TGG - chr7.4:11551545-11551564 None:intergenic 30.0%
!! AAATTTTGGCCATTGTTGTT+TGG + chr7.4:11552718-11552737 MS.gene061826:CDS 30.0%
!! GAAAATCTTTTGTTTGGTTC+TGG + chr7.4:11552015-11552034 MS.gene061826:CDS 30.0%
!! GATGTTTGTAATGGTTTGTT+AGG + chr7.4:11552399-11552418 MS.gene061826:CDS 30.0%
!! TGCACATTTGGTTCAAATTT+TGG + chr7.4:11552704-11552723 MS.gene061826:CDS 30.0%
!!! AATTTTGGCCATTGTTGTTT+GGG + chr7.4:11552719-11552738 MS.gene061826:CDS 30.0%
!!! CATTTTTACTTTGGTTTGGT+TGG + chr7.4:11552196-11552215 MS.gene061826:CDS 30.0%
ACACCTTCTAATGGTTTCAT+TGG + chr7.4:11551760-11551779 MS.gene061826:CDS 35.0%
CCATAATCAAAAGACTGAGA+AGG - chr7.4:11551814-11551833 None:intergenic 35.0%
GGTGAAAGTGGTAATTACTA+TGG + chr7.4:11552264-11552283 MS.gene061826:CDS 35.0%
GTGGTAATTACTATGGTCAA+TGG + chr7.4:11552271-11552290 MS.gene061826:CDS 35.0%
TATTTCAGTTGCACGTTTCT+TGG - chr7.4:11552889-11552908 None:intergenic 35.0%
TTGATTGAAGGACCAAGAAT+TGG + chr7.4:11552105-11552124 MS.gene061826:CDS 35.0%
TTGTTCTGTTGTTGATCCAT+GGG + chr7.4:11552446-11552465 MS.gene061826:CDS 35.0%
TTTATCCAATAGTTGCGCAT+TGG + chr7.4:11551953-11551972 MS.gene061826:CDS 35.0%
! AAGATTATTGGCTGCACATT+TGG + chr7.4:11552692-11552711 MS.gene061826:CDS 35.0%
! CGGTCTGAAAATCTTTTGTT+TGG + chr7.4:11552009-11552028 MS.gene061826:CDS 35.0%
!! CCTTCTCAGTCTTTTGATTA+TGG + chr7.4:11551811-11551830 MS.gene061826:CDS 35.0%
!! GTTTGTAATGGTTTGTTAGG+TGG + chr7.4:11552402-11552421 MS.gene061826:CDS 35.0%
!! TGTGGTGTTGTTCATTTAGT+TGG + chr7.4:11552057-11552076 MS.gene061826:CDS 35.0%
!! TTACTTTGGTTTGGTTGGTA+TGG + chr7.4:11552201-11552220 MS.gene061826:CDS 35.0%
!!! TCTGGTGTTATTGATTTTGC+TGG + chr7.4:11552033-11552052 MS.gene061826:CDS 35.0%
AACAAACCATAAGGCCTATC+TGG - chr7.4:11552657-11552676 None:intergenic 40.0%
AACACTCACCCAAACAACAA+TGG - chr7.4:11552730-11552749 None:intergenic 40.0%
AACGTTTGCAAACAGGTCAT+TGG + chr7.4:11552367-11552386 MS.gene061826:CDS 40.0%
ATAGAAAAAAATGCCGCCAG+TGG - chr7.4:11551713-11551732 None:intergenic 40.0%
CAAAACCAATGCGCAACTAT+TGG - chr7.4:11551961-11551980 None:intergenic 40.0%
CATGGCAAAAACAAGGTAAG+CGG - chr7.4:11551605-11551624 None:intergenic 40.0%
GAGTTCACATGAAGAAGAGA+TGG + chr7.4:11552797-11552816 MS.gene061826:CDS 40.0%
GGATTGGATTTAACTAGCCA+TGG + chr7.4:11552822-11552841 MS.gene061826:CDS 40.0%
GTTGTTCTGTTGTTGATCCA+TGG + chr7.4:11552445-11552464 MS.gene061826:CDS 40.0%
GTTTCAATGAGAGGACATAG+TGG + chr7.4:11552153-11552172 MS.gene061826:CDS 40.0%
TTGGATTTAACTAGCCATGG+TGG + chr7.4:11552825-11552844 MS.gene061826:CDS 40.0%
TTTATGGTGGTTCACCAGAT+AGG + chr7.4:11552640-11552659 MS.gene061826:CDS 40.0%
TTTGGGAAACGTTTGCAAAC+AGG + chr7.4:11552360-11552379 MS.gene061826:CDS 40.0%
! AAAAGATTTTCAGACCGAGC+CGG - chr7.4:11552006-11552025 None:intergenic 40.0%
! ATGGTCAATGGAGTGCTATT+GGG + chr7.4:11552283-11552302 MS.gene061826:CDS 40.0%
! CAGCTCTCACTACTTTGTTT+GGG + chr7.4:11552343-11552362 MS.gene061826:CDS 40.0%
! GTTTGGGTGAGTGTTACTAT+GGG + chr7.4:11552735-11552754 MS.gene061826:CDS 40.0%
! TATGGTCAATGGAGTGCTAT+TGG + chr7.4:11552282-11552301 MS.gene061826:CDS 40.0%
! TGTTTGGGTGAGTGTTACTA+TGG + chr7.4:11552734-11552753 MS.gene061826:CDS 40.0%
!! AGGCCTTATGGTTTGTTGTT+GGG + chr7.4:11552660-11552679 MS.gene061826:CDS 40.0%
!! TAGGCCTTATGGTTTGTTGT+TGG + chr7.4:11552659-11552678 MS.gene061826:CDS 40.0%
!! TTTAACTAGCCATGGTGGAT+TGG + chr7.4:11552830-11552849 MS.gene061826:CDS 40.0%
!!! CAATAGTTGCGCATTGGTTT+TGG + chr7.4:11551959-11551978 MS.gene061826:CDS 40.0%
!!! CTTGTTTTTGCCATGCAACT+CGG + chr7.4:11551610-11551629 MS.gene061826:CDS 40.0%
!!! GTTATTGATTTTGCTGGCTG+TGG + chr7.4:11552039-11552058 MS.gene061826:CDS 40.0%
!!! TTTTGGGGTGCTTTGATTGA+AGG + chr7.4:11552093-11552112 MS.gene061826:CDS 40.0%
ACTGATAAGCCAATCCACCA+TGG - chr7.4:11552842-11552861 None:intergenic 45.0%
CAAGGTAAGCGGAAAAGAGA+AGG - chr7.4:11551594-11551613 None:intergenic 45.0%
CCTCCCAACAACAAACCATA+AGG - chr7.4:11552666-11552685 None:intergenic 45.0%
CGAGTTGCATGGCAAAAACA+AGG - chr7.4:11551612-11551631 None:intergenic 45.0%
CTTGAAGCTGCTCAACTTCA+TGG + chr7.4:11552552-11552571 MS.gene061826:CDS 45.0%
GAAGCCGTTGCAGATGTATT+CGG - chr7.4:11551518-11551537 None:intergenic 45.0%
GACAGCTGTGACAACTACAT+TGG + chr7.4:11552308-11552327 MS.gene061826:CDS 45.0%
GCAGCTCTCACTACTTTGTT+TGG + chr7.4:11552342-11552361 MS.gene061826:CDS 45.0%
GCATCCAATCAAAACCCAAG+CGG - chr7.4:11552496-11552515 None:intergenic 45.0%
GTAAGCGGAAAAGAGAAGGT+AGG - chr7.4:11551590-11551609 None:intergenic 45.0%
TCACATGAAGAAGAGATGGC+TGG + chr7.4:11552801-11552820 MS.gene061826:CDS 45.0%
TGAAGAAGAGATGGCTGGAT+TGG + chr7.4:11552806-11552825 MS.gene061826:CDS 45.0%
TGAAGTTGAGCAGCTTCAAG+AGG - chr7.4:11552552-11552571 None:intergenic 45.0%
! CATTTAGTTGGTGCAGTTGC+TGG + chr7.4:11552069-11552088 MS.gene061826:CDS 45.0%
! GGTTTTGCTGCTATAACTGC+AGG + chr7.4:11552423-11552442 MS.gene061826:CDS 45.0%
! TTCGGGTTTGCCTTTGCTTT+CGG + chr7.4:11551736-11551755 MS.gene061826:CDS 45.0%
! TTTTGGTCTGCTGATGGTTG+GGG + chr7.4:11551976-11551995 MS.gene061826:CDS 45.0%
!! CCTTATGGTTTGTTGTTGGG+AGG + chr7.4:11552663-11552682 MS.gene061826:CDS 45.0%
!! GGTAAGGGTGTTTCAATGAG+AGG + chr7.4:11552144-11552163 MS.gene061826:CDS 45.0%
!! GTTTTGGTCTGCTGATGGTT+GGG + chr7.4:11551975-11551994 MS.gene061826:CDS 45.0%
!! TATGGTTTGTTGTTGGGAGG+TGG + chr7.4:11552666-11552685 MS.gene061826:CDS 45.0%
!!! CATGGTGTTTTTGGCACGAA+CGG - chr7.4:11551659-11551678 None:intergenic 45.0%
!!! CATTGGTTTTGGTCTGCTGA+TGG + chr7.4:11551970-11551989 MS.gene061826:CDS 45.0%
!!! GGTTGGTATGGTTTTAACCC+TGG + chr7.4:11552213-11552232 MS.gene061826:CDS 45.0%
!!! TGGTGCAGTTGCTGGTTTTT+GGG + chr7.4:11552077-11552096 MS.gene061826:CDS 45.0%
!!! TTGGTGCAGTTGCTGGTTTT+TGG + chr7.4:11552076-11552095 MS.gene061826:CDS 45.0%
AACGTCCTTCAGGCTCTTCA+TGG - chr7.4:11552866-11552885 None:intergenic 50.0%
AATGTTCTTGATGCCGCCAC+TGG + chr7.4:11551694-11551713 MS.gene061826:CDS 50.0%
AGTGGCGGCATCAAGAACAT+TGG - chr7.4:11551695-11551714 None:intergenic 50.0%
CAGTACCATGAAGAGCCTGA+AGG + chr7.4:11552858-11552877 MS.gene061826:CDS 50.0%
CATGGCAAAACCGAGTTGCA+TGG - chr7.4:11551623-11551642 None:intergenic 50.0%
CGTTTCTTGGAACGTCCTTC+AGG - chr7.4:11552876-11552895 None:intergenic 50.0%
GAAAAAAATGCCGCCAGTGG+CGG - chr7.4:11551710-11551729 None:intergenic 50.0%
GAAGCTGCTCAACTTCATGG+TGG + chr7.4:11552555-11552574 MS.gene061826:CDS 50.0%
GCTCAACTTCATGGTGGTTG+TGG + chr7.4:11552561-11552580 MS.gene061826:CDS 50.0%
GCTGCCGAATACATCTGCAA+CGG + chr7.4:11551511-11551530 MS.gene061826:CDS 50.0%
GCTGTGACAACTACATTGGC+TGG + chr7.4:11552312-11552331 MS.gene061826:CDS 50.0%
GCTTTCGGCACACCTTCTAA+TGG + chr7.4:11551751-11551770 MS.gene061826:CDS 50.0%
GGTTCACCAGATAGGCCTTA+TGG + chr7.4:11552648-11552667 MS.gene061826:CDS 50.0%
GTTGCAGATGTATTCGGCAG+CGG - chr7.4:11551512-11551531 None:intergenic 50.0%
TCATGGTGGTTGTGGCACAT+GGG + chr7.4:11552569-11552588 MS.gene061826:CDS 50.0%
TTCATGGTGGTTGTGGCACA+TGG + chr7.4:11552568-11552587 MS.gene061826:CDS 50.0%
! AGAAGGTGTGCCGAAAGCAA+AGG - chr7.4:11551749-11551768 None:intergenic 50.0%
! CCATGGGCTGCAATAGTTTG+CGG + chr7.4:11552462-11552481 MS.gene061826:CDS 50.0%
! GCTTTTGCAATTGCTGCAGC+AGG + chr7.4:11551853-11551872 MS.gene061826:CDS 50.0%
! GTAGGTGTTGTCAACAGCGT+AGG - chr7.4:11551572-11551591 None:intergenic 50.0%
! GTCAATGGAGTGCTATTGGG+AGG + chr7.4:11552286-11552305 MS.gene061826:CDS 50.0%
!! GGGAGGTGGTGGAAGATTAT+TGG + chr7.4:11552680-11552699 MS.gene061826:CDS 50.0%
!! GGTTTTGGTCTGCTGATGGT+TGG + chr7.4:11551974-11551993 MS.gene061826:CDS 50.0%
!! GTTGCCGCTTGGGTTTTGAT+TGG + chr7.4:11552489-11552508 MS.gene061826:CDS 50.0%
!! TTGCGGATTTGTTGCCGCTT+GGG + chr7.4:11552479-11552498 MS.gene061826:CDS 50.0%
!! TTTGCGGATTTGTTGCCGCT+TGG + chr7.4:11552478-11552497 MS.gene061826:CDS 50.0%
!!! GGTGCAGTTGCTGGTTTTTG+GGG + chr7.4:11552078-11552097 MS.gene061826:CDS 50.0%
AACGGAACCAGCGCAAAGCA+TGG - chr7.4:11551641-11551660 None:intergenic 55.0%
ATGGTGGTTGTGGCACATGG+GGG + chr7.4:11552571-11552590 MS.gene061826:CDS 55.0%
CATGGTGGTTGTGGCACATG+GGG + chr7.4:11552570-11552589 MS.gene061826:CDS 55.0%
CCGCAAACTATTGCAGCCCA+TGG - chr7.4:11552465-11552484 None:intergenic 55.0%
GCTGCAGCAGGAATCACTAG+TGG + chr7.4:11551865-11551884 MS.gene061826:CDS 55.0%
TGCTGATGGTTGGGGTAGTC+CGG + chr7.4:11551984-11552003 MS.gene061826:CDS 55.0%
! GGTTTTGCCATGCTTTGCGC+TGG + chr7.4:11551631-11551650 MS.gene061826:CDS 55.0%
!! GGTTTGTTGTTGGGAGGTGG+TGG + chr7.4:11552669-11552688 MS.gene061826:CDS 55.0%
ATGGTTGGGGTAGTCCGGCT+CGG + chr7.4:11551989-11552008 MS.gene061826:CDS 60.0%
GATGTATTCGGCAGCGGCTG+TGG - chr7.4:11551506-11551525 None:intergenic 60.0%
GTTCTTGATGCCGCCACTGG+CGG + chr7.4:11551697-11551716 MS.gene061826:CDS 60.0%
TCCGACCTCCACGCTCTCCT+CGG + chr7.4:11551466-11551485 MS.gene061826:CDS 65.0%
TGGAGTTTGCACCGCTGCCG+AGG - chr7.4:11551486-11551505 None:intergenic 65.0%
CTCCACGCTCTCCTCGGCAG+CGG + chr7.4:11551472-11551491 MS.gene061826:CDS 70.0%
! GAGAGCGTGGAGGTCGGAGG+CGG - chr7.4:11551464-11551483 None:intergenic 70.0%
! GAGGAGAGCGTGGAGGTCGG+AGG - chr7.4:11551467-11551486 None:intergenic 70.0%
! GCCGAGGAGAGCGTGGAGGT+CGG - chr7.4:11551470-11551489 None:intergenic 70.0%
CACCGCTGCCGAGGAGAGCG+TGG - chr7.4:11551477-11551496 None:intergenic 75.0%
GTGGAGGTCGGAGGCGGAGC+AGG - chr7.4:11551458-11551477 None:intergenic 75.0%
! CGCTGCCGAGGAGAGCGTGG+AGG - chr7.4:11551474-11551493 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 11551442 11552911 11551442 ID=MS.gene061826
chr7.4 mRNA 11551442 11552911 11551442 ID=MS.gene061826.t1;Parent=MS.gene061826
chr7.4 exon 11551442 11552911 11551442 ID=MS.gene061826.t1.exon1;Parent=MS.gene061826.t1
chr7.4 CDS 11551442 11552911 11551442 ID=cds.MS.gene061826.t1;Parent=MS.gene061826.t1
Gene Sequence

>MS.gene061826

ATGACTTCTTTTACCTGCTCCGCCTCCGACCTCCACGCTCTCCTCGGCAGCGGTGCAAACTCCACAGCCGCTGCCGAATACATCTGCAACGGCTTCAACACCATTGCAAACAAATTCATTGACACAACCTACGCTGTTGACAACACCTACCTTCTCTTTTCCGCTTACCTTGTTTTTGCCATGCAACTCGGTTTTGCCATGCTTTGCGCTGGTTCCGTTCGTGCCAAAAACACCATGAATATTATGTTAACCAATGTTCTTGATGCCGCCACTGGCGGCATTTTTTTCTATATTTTCGGGTTTGCCTTTGCTTTCGGCACACCTTCTAATGGTTTCATTGGAAAACACTTTTTCGGTCTTAGTGATTTTCCTTCTCAGTCTTTTGATTATGGATATTTTCTGTATCAATGGGCTTTTGCAATTGCTGCAGCAGGAATCACTAGTGGATCAATTGCTGAGAGAACACAATTTGTTTCTTATTTGATTTATTCATCTTTTTTAACCGGTTTAGTTTATCCAATAGTTGCGCATTGGTTTTGGTCTGCTGATGGTTGGGGTAGTCCGGCTCGGTCTGAAAATCTTTTGTTTGGTTCTGGTGTTATTGATTTTGCTGGCTGTGGTGTTGTTCATTTAGTTGGTGCAGTTGCTGGTTTTTGGGGTGCTTTGATTGAAGGACCAAGAATTGGTAGATTTGATCATGAAGGTAAGGGTGTTTCAATGAGAGGACATAGTGGTACTTTAGTTGTTATGGGAACATTTTTACTTTGGTTTGGTTGGTATGGTTTTAACCCTGGTTCTTTTCTTAACATCTTAAAAACTTATGGTGAAAGTGGTAATTACTATGGTCAATGGAGTGCTATTGGGAGGACAGCTGTGACAACTACATTGGCTGGATGCACTGCAGCTCTCACTACTTTGTTTGGGAAACGTTTGCAAACAGGTCATTGGAATGTTACTGATGTTTGTAATGGTTTGTTAGGTGGTTTTGCTGCTATAACTGCAGGTTGTTCTGTTGTTGATCCATGGGCTGCAATAGTTTGCGGATTTGTTGCCGCTTGGGTTTTGATTGGATGCAATTTGTTAGCCGAGAAATTTCAATATGATGATCCTCTTGAAGCTGCTCAACTTCATGGTGGTTGTGGCACATGGGGGATTATTTTCACTGCTTTGTTTGCTAAGAAACAATATGTTAAAGAAGTTTATGGTGGTTCACCAGATAGGCCTTATGGTTTGTTGTTGGGAGGTGGTGGAAGATTATTGGCTGCACATTTGGTTCAAATTTTGGCCATTGTTGTTTGGGTGAGTGTTACTATGGGTACCTTGTTTTTTATTCTTCATAAATTGAATTTGCTTAGGAGTTCACATGAAGAAGAGATGGCTGGATTGGATTTAACTAGCCATGGTGGATTGGCTTATCAGTACCATGAAGAGCCTGAAGGACGTTCCAAGAAACGTGCAACTGAAATATGA
Protein sequence

>MS.gene061826.t1

MTSFTCSASDLHALLGSGANSTAAAEYICNGFNTIANKFIDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFAFAFGTPSNGFIGKHFFGLSDFPSQSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSPARSENLLFGSGVIDFAGCGVVHLVGAVAGFWGALIEGPRIGRFDHEGKGVSMRGHSGTLVVMGTFLLWFGWYGFNPGSFLNILKTYGESGNYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAIVCGFVAAWVLIGCNLLAEKFQYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVKEVYGGSPDRPYGLLLGGGGRLLAAHLVQILAIVVWVSVTMGTLFFILHKLNLLRSSHEEEMAGLDLTSHGGLAYQYHEEPEGRSKKRATEI