AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049351


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049351.t1 MTR_3g095070 96.096 333 13 0 1 333 1 333 0.0 661
MS.gene049351.t1 MTR_7g100328 37.367 281 151 6 60 324 74 345 9.42e-52 175
MS.gene049351.t1 MTR_1g067600 33.333 210 134 4 104 310 132 338 3.83e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049351.t1 AT4G39470 54.513 277 120 2 62 333 66 341 6.08e-103 306
MS.gene049351.t1 AT3G18420 36.992 246 142 4 74 306 55 300 2.43e-42 149
MS.gene049351.t1 AT2G37400 39.896 193 115 1 123 314 129 321 9.74e-38 137
MS.gene049351.t1 AT3G53560 40.000 195 112 2 123 314 129 321 2.32e-37 137
MS.gene049351.t1 AT3G53560 39.320 206 119 3 112 314 167 369 4.78e-37 137
MS.gene049351.t1 AT5G02590 39.691 194 115 2 115 307 120 312 5.50e-37 135
MS.gene049351.t1 AT3G09490 35.814 215 130 3 92 303 84 293 1.65e-30 118

Find 68 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTATTTGGAAATTT+TGG 0.111951 3.1:-75789928 MS.gene049351:CDS
TGTTGATTCAGCTGAAATTT+TGG 0.183578 3.1:-75790147 MS.gene049351:CDS
TAAGGCTAAAGGATTGTATT+TGG 0.219222 3.1:-75789937 MS.gene049351:CDS
AACAAGTGCATAGTGATAAA+TGG 0.231649 3.1:+75790321 None:intergenic
AATTCCTTCTGAAACTTTAC+TGG 0.241171 3.1:+75788085 None:intergenic
ATACAGTCTTCTAGATAAAA+AGG 0.263949 3.1:-75788212 MS.gene049351:CDS
AAAATTGTGGAGGGTGTTAA+TGG 0.334111 3.1:+75790290 None:intergenic
AGAAGGGAATTGGGGAGATA+TGG 0.336995 3.1:+75790413 None:intergenic
TGGTTGTGTATGGGAAAATT+AGG 0.344777 3.1:-75790076 MS.gene049351:CDS
GTGTGCTTTGCAGGGTGATT+TGG 0.355123 3.1:-75788504 MS.gene049351:intron
CCCTTCTGTGGAAACTCTTC+AGG 0.358106 3.1:+75788148 None:intergenic
AGCCTCCACTCAACCTCATT+TGG 0.359412 3.1:+75789999 None:intergenic
TCGTGGCAAAAGAAGGGAAT+TGG 0.399875 3.1:+75790403 None:intergenic
CGTGGCAAAAGAAGGGAATT+GGG 0.418032 3.1:+75790404 None:intergenic
ACAAGTGCATAGTGATAAAT+GGG 0.468344 3.1:+75790322 None:intergenic
GCTCTTAAAGTGGTTGTGTA+TGG 0.470707 3.1:-75790086 MS.gene049351:CDS
TTGCAGGGTGATTTGGAGGA+GGG 0.472903 3.1:-75788497 MS.gene049351:intron
TTACGGAGGAGAGAAATATA+AGG 0.473332 3.1:-75788666 MS.gene049351:CDS
TACGAATTCGTGGCAAAAGA+AGG 0.481369 3.1:+75790396 None:intergenic
TTTGCAGGGTGATTTGGAGG+AGG 0.482427 3.1:-75788498 MS.gene049351:intron
GGTTGAAGTGAAATTGATAA+GGG 0.483895 3.1:+75790362 None:intergenic
TGCACAAATGCGTGTTGTAC+AGG 0.487235 3.1:-75788635 MS.gene049351:intron
TGCTTTGCAGGGTGATTTGG+AGG 0.487354 3.1:-75788501 MS.gene049351:intron
GATATCACCTTAGCAGCAAA+AGG 0.497307 3.1:-75788115 MS.gene049351:CDS
TTCAGCATTTCAAATACAGC+AGG 0.497693 3.1:+75788724 None:intergenic
GACAATGGGGTATTTGAGTA+AGG 0.500527 3.1:-75789955 MS.gene049351:CDS
CTCTTAAAGTGGTTGTGTAT+GGG 0.502104 3.1:-75790085 MS.gene049351:CDS
AAGCTGAGAAGTTTGTGAAG+AGG 0.509773 3.1:-75790037 MS.gene049351:CDS
TGGTTGAAGTGAAATTGATA+AGG 0.510289 3.1:+75790361 None:intergenic
ATTCCTTCTGAAACTTTACT+GGG 0.524396 3.1:+75788086 None:intergenic
AAACTCACCTGGCAAAGATA+AGG 0.536373 3.1:+75788425 None:intergenic
GGGTATTTGAGTAAGGCTAA+AGG 0.536389 3.1:-75789948 MS.gene049351:CDS
GCATTGTGTTATGAGACAAT+GGG 0.536548 3.1:-75789969 MS.gene049351:CDS
GCCTGAAGAGTTTCCACAGA+AGG 0.536929 3.1:-75788149 MS.gene049351:CDS
AAATGTTGAGGCTCTTAAAG+TGG 0.543541 3.1:-75790096 MS.gene049351:CDS
TATTAATGAAAACAAAGTTA+CGG 0.545367 3.1:-75788683 MS.gene049351:CDS
GGTACTGAAACTGCAAAAGC+GGG 0.549723 3.1:+75790173 None:intergenic
CCTGAAGAGTTTCCACAGAA+GGG 0.557973 3.1:-75788148 MS.gene049351:CDS
AAGTTGGTTAAAGTTGTTTG+AGG 0.558821 3.1:+75790263 None:intergenic
GGAGGGTGTTAATGGAGTGC+GGG 0.560063 3.1:+75790298 None:intergenic
TGCATTGTGTTATGAGACAA+TGG 0.562265 3.1:-75789970 MS.gene049351:CDS
GATTGATGAGGAACCAAATG+AGG 0.565692 3.1:-75790012 MS.gene049351:CDS
TGGAGGGTGTTAATGGAGTG+CGG 0.568184 3.1:+75790297 None:intergenic
TCATCAAGAAATCCCTTCTG+TGG 0.572197 3.1:+75788136 None:intergenic
TTGTTGCAGATACGAATTCG+TGG 0.574634 3.1:+75790386 None:intergenic
TGAAGAGCTCTAACAAGAAG+AGG 0.582607 3.1:+75789897 None:intergenic
AGGAACCAAATGAGGTTGAG+TGG 0.584513 3.1:-75790004 MS.gene049351:CDS
ACGAATTCGTGGCAAAAGAA+GGG 0.586466 3.1:+75790397 None:intergenic
ATCCCCAGTAAAGTTTCAGA+AGG 0.590040 3.1:-75788089 MS.gene049351:CDS
AGGTACTGAAACTGCAAAAG+CGG 0.602398 3.1:+75790172 None:intergenic
TGTGAAGAGGTTGATTGATG+AGG 0.608344 3.1:-75790024 MS.gene049351:CDS
TGTTTGAGGTGAGAAAATTG+TGG 0.610889 3.1:+75790277 None:intergenic
GAAGGATTCAAGAAATGTTG+AGG 0.622010 3.1:-75790108 MS.gene049351:CDS
TGTATGGGAAAATTAGGAGA+GGG 0.623027 3.1:-75790070 MS.gene049351:CDS
ATTTCAGCTGAATCAACAGA+AGG 0.625556 3.1:+75790152 None:intergenic
TGAGGTGAGAAAATTGTGGA+GGG 0.628555 3.1:+75790281 None:intergenic
GTGTATGGGAAAATTAGGAG+AGG 0.651978 3.1:-75790071 MS.gene049351:CDS
AGATAAGGCCTAAAATCTCG+AGG 0.652081 3.1:+75788440 None:intergenic
TTCCTTCTGAAACTTTACTG+GGG 0.652971 3.1:+75788087 None:intergenic
GTGGCAAAAGAAGGGAATTG+GGG 0.656867 3.1:+75790405 None:intergenic
TGTATTTGAAATGCTGAACA+AGG 0.665874 3.1:-75788719 MS.gene049351:CDS
TTGAGGTGAGAAAATTGTGG+AGG 0.671928 3.1:+75790280 None:intergenic
ATAGTGATAAATGGGTAGCA+CGG 0.676425 3.1:+75790330 None:intergenic
AACCAAATGAGGTTGAGTGG+AGG 0.677766 3.1:-75790001 MS.gene049351:CDS
TAATGAAAACAAAGTTACGG+AGG 0.686188 3.1:-75788680 MS.gene049351:CDS
GAGATATGGTTTGAACTCTG+AGG 0.695791 3.1:+75790427 None:intergenic
CTCTGAGGAGATGAAGAGAG+TGG 0.713127 3.1:+75790442 None:intergenic
CATTGTGTTATGAGACAATG+GGG 0.737873 3.1:-75789968 MS.gene049351:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATGAAAACAAAGTTA+CGG - chr3.1:75789835-75789854 MS.gene049351:intron 15.0%
!!! TAATACAATTACTATTTTGA+CGG + chr3.1:75789641-75789660 None:intergenic 15.0%
!!! TCAAATTTTGATTAGAAATT+TGG - chr3.1:75788767-75788786 MS.gene049351:intron 15.0%
!! AAATAAAGAGTTAAGAACTT+AGG + chr3.1:75789224-75789243 None:intergenic 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG + chr3.1:75789223-75789242 None:intergenic 20.0%
!! CAAAACAATATAAGCATAAT+AGG + chr3.1:75789328-75789347 None:intergenic 20.0%
!! CAATACAATAATTTCATGAA+TGG + chr3.1:75790254-75790273 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG - chr3.1:75789397-75789416 MS.gene049351:intron 20.0%
!! TTTGATTATGATTGAAAAGT+TGG - chr3.1:75788717-75788736 MS.gene049351:CDS 20.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG - chr3.1:75788288-75788307 MS.gene049351:intron 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG - chr3.1:75788289-75788308 MS.gene049351:intron 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG - chr3.1:75788740-75788759 MS.gene049351:CDS 20.0%
!!! TAATATAGTTCTGTAAGATA+TGG - chr3.1:75790208-75790227 MS.gene049351:CDS 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG - chr3.1:75788663-75788682 MS.gene049351:CDS 20.0%
! AACATCCAAAATTCATACAT+GGG + chr3.1:75789278-75789297 None:intergenic 25.0%
! AATCTGAATCCAAAGTAAAA+TGG + chr3.1:75789537-75789556 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG - chr3.1:75789439-75789458 MS.gene049351:intron 25.0%
! AGAACAAAAATTAAAGTCAG+AGG + chr3.1:75790148-75790167 None:intergenic 25.0%
! ATACAGTCTTCTAGATAAAA+AGG - chr3.1:75790306-75790325 MS.gene049351:CDS 25.0%
! ATGCAATCATATTTGCATAA+AGG + chr3.1:75789172-75789191 None:intergenic 25.0%
! ATGTTAAAAGAATATGTTGC+AGG - chr3.1:75790276-75790295 MS.gene049351:CDS 25.0%
! TCACATAAATTTACAATCAC+AGG + chr3.1:75789386-75789405 None:intergenic 25.0%
! TGTTAAAAGAATATGTTGCA+GGG - chr3.1:75790277-75790296 MS.gene049351:CDS 25.0%
! TTTGATGGAATTATGAATGT+TGG - chr3.1:75788678-75788697 MS.gene049351:CDS 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG + chr3.1:75788274-75788293 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG - chr3.1:75788590-75788609 MS.gene049351:intron 25.0%
!! TAAAACCCATGTATGAATTT+TGG - chr3.1:75789270-75789289 MS.gene049351:intron 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG - chr3.1:75788860-75788879 MS.gene049351:intron 25.0%
!!! ATAGCTGTTATTTTGACAAT+TGG + chr3.1:75789440-75789459 None:intergenic 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG - chr3.1:75788598-75788617 MS.gene049351:intron 25.0%
!!! GTCTTTTTGGAGTAATTATT+TGG - chr3.1:75789977-75789996 MS.gene049351:CDS 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG - chr3.1:75788859-75788878 MS.gene049351:intron 25.0%
!!! TGTTTTTTCATAAGTTATCG+TGG + chr3.1:75788946-75788965 None:intergenic 25.0%
AACAAGTGCATAGTGATAAA+TGG + chr3.1:75788200-75788219 None:intergenic 30.0%
AATATGATTGCATGTTGACA+TGG - chr3.1:75789179-75789198 MS.gene049351:intron 30.0%
ACAAGTGCATAGTGATAAAT+GGG + chr3.1:75788199-75788218 None:intergenic 30.0%
CAACATCCAAAATTCATACA+TGG + chr3.1:75789279-75789298 None:intergenic 30.0%
GGTTGAAGTGAAATTGATAA+GGG + chr3.1:75788159-75788178 None:intergenic 30.0%
TAAGGCTAAAGGATTGTATT+TGG - chr3.1:75788581-75788600 MS.gene049351:intron 30.0%
TAATGAAAACAAAGTTACGG+AGG - chr3.1:75789838-75789857 MS.gene049351:intron 30.0%
TACTTTGGATTCAGATTTGA+AGG - chr3.1:75789540-75789559 MS.gene049351:intron 30.0%
TGGTTGAAGTGAAATTGATA+AGG + chr3.1:75788160-75788179 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG - chr3.1:75789669-75789688 MS.gene049351:intron 30.0%
TTGAGCCTTAGTATGTATTT+CGG - chr3.1:75789353-75789372 MS.gene049351:intron 30.0%
! AACCATGAACAATGTCTTTT+TGG - chr3.1:75789964-75789983 MS.gene049351:CDS 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG + chr3.1:75788258-75788277 None:intergenic 30.0%
! ATCAAAATCCTCGAGATTTT+AGG - chr3.1:75790070-75790089 MS.gene049351:CDS 30.0%
! GGTAAATTGATTTCATGACA+TGG + chr3.1:75789669-75789688 None:intergenic 30.0%
! TGTATTTGAAATGCTGAACA+AGG - chr3.1:75789799-75789818 MS.gene049351:intron 30.0%
!! AATTCCTTCTGAAACTTTAC+TGG + chr3.1:75790436-75790455 None:intergenic 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG - chr3.1:75788386-75788405 MS.gene049351:intron 30.0%
!! ATTCCTTCTGAAACTTTACT+GGG + chr3.1:75790435-75790454 None:intergenic 30.0%
!! TTGTTGACTTAGTGTTTGTT+TGG - chr3.1:75788813-75788832 MS.gene049351:intron 30.0%
!!! TGTTGATTCAGCTGAAATTT+TGG - chr3.1:75788371-75788390 MS.gene049351:intron 30.0%
AAATGTTGAGGCTCTTAAAG+TGG - chr3.1:75788422-75788441 MS.gene049351:intron 35.0%
AACAAACAAATTGAGTGTCC+TGG + chr3.1:75789690-75789709 None:intergenic 35.0%
AACTCGTAGTAGATAAGCAA+AGG + chr3.1:75789937-75789956 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG - chr3.1:75790005-75790024 MS.gene049351:CDS 35.0%
ATAGTGATAAATGGGTAGCA+CGG + chr3.1:75788191-75788210 None:intergenic 35.0%
ATTTCAGCTGAATCAACAGA+AGG + chr3.1:75788369-75788388 None:intergenic 35.0%
CAGTCTTCTAGATAAAAAGG+AGG - chr3.1:75790309-75790328 MS.gene049351:CDS 35.0%
CATTGTGTTATGAGACAATG+GGG - chr3.1:75788550-75788569 MS.gene049351:intron 35.0%
CTCCAAAAAGACATTGTTCA+TGG + chr3.1:75789969-75789988 None:intergenic 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG - chr3.1:75788433-75788452 MS.gene049351:CDS 35.0%
CTGAATCCAAAGTAAAATGG+TGG + chr3.1:75789534-75789553 None:intergenic 35.0%
GAAGGATTCAAGAAATGTTG+AGG - chr3.1:75788410-75788429 MS.gene049351:intron 35.0%
GCATTGTGTTATGAGACAAT+GGG - chr3.1:75788549-75788568 MS.gene049351:intron 35.0%
GTGATGCACAAAAACAATGA+GGG - chr3.1:75789770-75789789 MS.gene049351:intron 35.0%
TAACATATGTGTGCTTTGCA+GGG - chr3.1:75790006-75790025 MS.gene049351:CDS 35.0%
TCTTCCCGAAATACATACTA+AGG + chr3.1:75789361-75789380 None:intergenic 35.0%
TGAGCCTTAGTATGTATTTC+GGG - chr3.1:75789354-75789373 MS.gene049351:intron 35.0%
TGCATTGTGTTATGAGACAA+TGG - chr3.1:75788548-75788567 MS.gene049351:intron 35.0%
TGGTTGTGTATGGGAAAATT+AGG - chr3.1:75788442-75788461 MS.gene049351:CDS 35.0%
TGTATGGGAAAATTAGGAGA+GGG - chr3.1:75788448-75788467 MS.gene049351:CDS 35.0%
TTACGGAGGAGAGAAATATA+AGG - chr3.1:75789852-75789871 MS.gene049351:intron 35.0%
TTAGTATGTATTTCGGGAAG+AGG - chr3.1:75789360-75789379 MS.gene049351:intron 35.0%
TTCAGCATTTCAAATACAGC+AGG + chr3.1:75789797-75789816 None:intergenic 35.0%
TTTGCTAGATGCTTCTTTGA+CGG - chr3.1:75789566-75789585 MS.gene049351:intron 35.0%
TTTGGATTCAGATTTGAAGG+TGG - chr3.1:75789543-75789562 MS.gene049351:intron 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG - chr3.1:75789070-75789089 MS.gene049351:intron 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG - chr3.1:75789467-75789486 MS.gene049351:intron 35.0%
! AGTGATACTCTCTTTTCTAC+AGG - chr3.1:75789736-75789755 MS.gene049351:intron 35.0%
! GATTGGTAATCATGGCTATT+AGG - chr3.1:75789087-75789106 MS.gene049351:intron 35.0%
! GTGATACTCTCTTTTCTACA+GGG - chr3.1:75789737-75789756 MS.gene049351:intron 35.0%
! TGAACACCACCATTTTACTT+TGG - chr3.1:75789525-75789544 MS.gene049351:intron 35.0%
! TGATTCAGCTGAAATTTTGG+AGG - chr3.1:75788374-75788393 MS.gene049351:intron 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG + chr3.1:75788244-75788263 None:intergenic 35.0%
!! AAAATTGTGGAGGGTGTTAA+TGG + chr3.1:75788231-75788250 None:intergenic 35.0%
!! TTCCTTCTGAAACTTTACTG+GGG + chr3.1:75790434-75790453 None:intergenic 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG + chr3.1:75789631-75789650 None:intergenic 35.0%
AAACTCACCTGGCAAAGATA+AGG + chr3.1:75790096-75790115 None:intergenic 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG - chr3.1:75788481-75788500 MS.gene049351:CDS 40.0%
AAGTTATCGTGGAGAGCTTA+TGG + chr3.1:75788935-75788954 None:intergenic 40.0%
ACGAATTCGTGGCAAAAGAA+GGG + chr3.1:75788124-75788143 None:intergenic 40.0%
AGATAAGGCCTAAAATCTCG+AGG + chr3.1:75790081-75790100 None:intergenic 40.0%
ATCCCCAGTAAAGTTTCAGA+AGG - chr3.1:75790429-75790448 MS.gene049351:CDS 40.0%
GAGATATGGTTTGAACTCTG+AGG + chr3.1:75788094-75788113 None:intergenic 40.0%
GATATCACCTTAGCAGCAAA+AGG - chr3.1:75790403-75790422 MS.gene049351:CDS 40.0%
GATTGATGAGGAACCAAATG+AGG - chr3.1:75788506-75788525 MS.gene049351:intron 40.0%
GATTTGCATACAAACTCACC+TGG + chr3.1:75790107-75790126 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG - chr3.1:75788432-75788451 MS.gene049351:intron 40.0%
GGGTATTTGAGTAAGGCTAA+AGG - chr3.1:75788570-75788589 MS.gene049351:intron 40.0%
GGTGATGCACAAAAACAATG+AGG - chr3.1:75789769-75789788 MS.gene049351:intron 40.0%
GTGTATGGGAAAATTAGGAG+AGG - chr3.1:75788447-75788466 MS.gene049351:CDS 40.0%
TACGAATTCGTGGCAAAAGA+AGG + chr3.1:75788125-75788144 None:intergenic 40.0%
TATGACGCTTGTCAAAACAC+CGG + chr3.1:75789504-75789523 None:intergenic 40.0%
TCATCAAGAAATCCCTTCTG+TGG + chr3.1:75790385-75790404 None:intergenic 40.0%
TGAGGTGAGAAAATTGTGGA+GGG + chr3.1:75788240-75788259 None:intergenic 40.0%
TTGAGGTGAGAAAATTGTGG+AGG + chr3.1:75788241-75788260 None:intergenic 40.0%
TTGTTGCAGATACGAATTCG+TGG + chr3.1:75788135-75788154 None:intergenic 40.0%
! ACTCTCTTTTCTACAGGGTT+TGG - chr3.1:75789742-75789761 MS.gene049351:intron 40.0%
! GACAATGGGGTATTTGAGTA+AGG - chr3.1:75788563-75788582 MS.gene049351:intron 40.0%
! GTGTTGCTGATTGGTAATCA+TGG - chr3.1:75789079-75789098 MS.gene049351:intron 40.0%
! TGAAGAGCTCTAACAAGAAG+AGG + chr3.1:75788624-75788643 None:intergenic 40.0%
! TGTGAAGAGGTTGATTGATG+AGG - chr3.1:75788494-75788513 MS.gene049351:CDS 40.0%
! TTTTCTACAGGGTTTGGCTA+TGG - chr3.1:75789748-75789767 MS.gene049351:intron 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG + chr3.1:75788349-75788368 None:intergenic 40.0%
!! TTTTAGGCCTTATCTTTGCC+AGG - chr3.1:75790086-75790105 MS.gene049351:CDS 40.0%
AACCAAATGAGGTTGAGTGG+AGG - chr3.1:75788517-75788536 MS.gene049351:intron 45.0%
AGAAGGGAATTGGGGAGATA+TGG + chr3.1:75788108-75788127 None:intergenic 45.0%
AGGAACCAAATGAGGTTGAG+TGG - chr3.1:75788514-75788533 MS.gene049351:intron 45.0%
CCTGAAGAGTTTCCACAGAA+GGG - chr3.1:75790370-75790389 MS.gene049351:CDS 45.0%
CGTGGCAAAAGAAGGGAATT+GGG + chr3.1:75788117-75788136 None:intergenic 45.0%
GATGAATATTAGACGGCGCT+AGG - chr3.1:75789404-75789423 MS.gene049351:intron 45.0%
GTGGCAAAAGAAGGGAATTG+GGG + chr3.1:75788116-75788135 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG + chr3.1:75788118-75788137 None:intergenic 45.0%
TGCACAAATGCGTGTTGTAC+AGG - chr3.1:75789883-75789902 MS.gene049351:intron 45.0%
! GCTTCTTTGACGGCATTTTG+TGG - chr3.1:75789576-75789595 MS.gene049351:intron 45.0%
! GGATGTTCCTTTTGCTGCTA+AGG + chr3.1:75790413-75790432 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG + chr3.1:75788348-75788367 None:intergenic 45.0%
! TGGGTAGCACGGAATTTTGA+TGG + chr3.1:75788180-75788199 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG - chr3.1:75788392-75788411 MS.gene049351:intron 45.0%
AGCCTCCACTCAACCTCATT+TGG + chr3.1:75788522-75788541 None:intergenic 50.0%
CCCTTCTGTGGAAACTCTTC+AGG + chr3.1:75790373-75790392 None:intergenic 50.0%
GCCTGAAGAGTTTCCACAGA+AGG - chr3.1:75790369-75790388 MS.gene049351:CDS 50.0%
GCTTGTCAAAACACCGGTCA+CGG + chr3.1:75789498-75789517 None:intergenic 50.0%
GTGTGCTTTGCAGGGTGATT+TGG - chr3.1:75790014-75790033 MS.gene049351:CDS 50.0%
! CTCTGAGGAGATGAAGAGAG+TGG + chr3.1:75788079-75788098 None:intergenic 50.0%
! TGCTTTGCAGGGTGATTTGG+AGG - chr3.1:75790017-75790036 MS.gene049351:CDS 50.0%
! TTGCAGGGTGATTTGGAGGA+GGG - chr3.1:75790021-75790040 MS.gene049351:CDS 50.0%
! TTTGCAGGGTGATTTGGAGG+AGG - chr3.1:75790020-75790039 MS.gene049351:CDS 50.0%
!! TGGAGGGTGTTAATGGAGTG+CGG + chr3.1:75788224-75788243 None:intergenic 50.0%
TTAAATGGCGACGCCGTGAC+CGG - chr3.1:75789482-75789501 MS.gene049351:intron 55.0%
!! GGAGGGTGTTAATGGAGTGC+GGG + chr3.1:75788223-75788242 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75788057 75790483 75788057 ID=MS.gene049351
chr3.1 mRNA 75788057 75790483 75788057 ID=MS.gene049351.t1;Parent=MS.gene049351
chr3.1 exon 75789896 75790483 75789896 ID=MS.gene049351.t1.exon1;Parent=MS.gene049351.t1
chr3.1 CDS 75789896 75790483 75789896 ID=cds.MS.gene049351.t1;Parent=MS.gene049351.t1
chr3.1 exon 75788636 75788782 75788636 ID=MS.gene049351.t1.exon2;Parent=MS.gene049351.t1
chr3.1 CDS 75788636 75788782 75788636 ID=cds.MS.gene049351.t1;Parent=MS.gene049351.t1
chr3.1 exon 75788433 75788513 75788433 ID=MS.gene049351.t1.exon3;Parent=MS.gene049351.t1
chr3.1 CDS 75788433 75788513 75788433 ID=cds.MS.gene049351.t1;Parent=MS.gene049351.t1
chr3.1 exon 75788057 75788242 75788057 ID=MS.gene049351.t1.exon4;Parent=MS.gene049351.t1
chr3.1 CDS 75788057 75788242 75788057 ID=cds.MS.gene049351.t1;Parent=MS.gene049351.t1
Gene Sequence

>MS.gene049351

ATGGCTTCTACTGCAACAACCACTCTCTTCATCTCCTCAGAGTTCAAACCATATCTCCCCAATTCCCTTCTTTTGCCACGAATTCGTATCTGCAACAAACCCTTATCAATTTCACTTCAACCATCAAAATTCCGTGCTACCCATTTATCACTATGCACTTGTTCCCGCACTCCATTAACACCCTCCACAATTTTCTCACCTCAAACAACTTTAACCAACTTCATTTCACAAAAAGTTTCATTTTTTCTCATTGGGTCGTTCATCTTCATCGCTTACTTCAGCAGAAAACCCGCTTTTGCAGTTTCAGTACCTTCTGTTGATTCAGCTGAAATTTTGGAGGAGAAGATTTTGGAGAAGGATTCAAGAAATGTTGAGGCTCTTAAAGTGGTTGTGTATGGGAAAATTAGGAGAGGGAAGTGTAAAGAAGCTGAGAAGTTTGTGAAGAGGTTGATTGATGAGGAACCAAATGAGGTTGAGTGGAGGCTTTTGCTTGCATTGTGTTATGAGACAATGGGGTATTTGAGTAAGGCTAAAGGATTGTATTTGGAAATTTTGGAGAATTGGCCTCTTCTTGTTAGAGCTCTTCATGTAATGTTTCTTAATCTATATATCTGTTTTTGTTTTGATGGAATTATGAATGTTGGTGTTGAAAGTTTGAATTTTGATTATGATTGAAAAGTTGGATATGAATGCTTTTTTGTTTAGGTTAGTCAAATTTTGATTAGAAATTTGGAATTTTTATTTGAACATTGATAATTGTTGACTTAGTGTTTGTTTGGATTGACTTATCTATTGACATAAATAGTTGTGAGAATGTTTTAAAGGGTTTATAGAAATAGCTTATAACATGTCTATAAATTCTTTTCAACTTAGTTCCATAAGCTCTCCACGATAACTTATGAAAAAACATATAGCTTAATATGAAATCAGTTTGACTTTATTTTATCGTTTGTTGTAAAAATAACTTATATGTAAGCACTTTTATGTTAAGCGCTTGATTAAGTTGTTTAGAGAAACAAGTTGTGTTGCTGATTGGTAATCATGGCTATTAGGAGTGCTCATCTAAAAACATTGTTATTACTATGCTATGAAAAAGATATATCTTATGTTATCCTTTATGCAAATATGATTGCATGTTGACATGGCAGTTCATTTCATATTTTCCCTAAGTTCTTAACTCTTTATTTCATGTTGTTCATTCATTAGAATTATATAAAACCCATGTATGAATTTTGGATGTTGTTTTAGTGTGATGCTTCAAAAGCATGCCTATTATGCTTATATTGTTTTGAGCAATTGAGCCTTAGTATGTATTTCGGGAAGAGGCCTGTGATTGTAAATTTATGTGATGAATATTAGACGGCGCTAGGCAGTTTCTAACCAATTGTCAAAATAACAGCTATGGTGTAAAACTGTGCAGTGTTGTTAAATGGCGACGCCGTGACCGGTGTTTTGACAAGCGTCATAGTGAACACCACCATTTTACTTTGGATTCAGATTTGAAGGTGGTTTGCTAGATGCTTCTTTGACGGCATTTTGTGGTGATACATTTTTTTAATATATCAGTATCACCACAAAATGCCGTCAAAATAGTAATTGTATTACAACTCCATGTCATGAAATCAATTTACCAGGACACTCAATTTGTTTGTTGCGCTTGTTTGCTTACGATTGAGATGAGTGATACTCTCTTTTCTACAGGGTTTGGCTATGGTGATGCACAAAAACAATGAGGGTCCTGCTGTATTTGAAATGCTGAACAAGGCTCTAGAGTTAGCTATTAATGAAAACAAAGTTACGGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCGTGTTGTACAGGTGAACTGCAGATTCATTAGTTTTCTCTTCCTTTGCTTATCTACTACGAGTTCAGCATTAACCATGAACAATGTCTTTTTGGAGTAATTATTTGGAAATCATAACATATGTGTGCTTTGCAGGGTGATTTGGAGGAGGGCTTGAAAAGATGTCAAGATTTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATCTTTGCCAGGTGAGTTTGTATGCAAATCATGCACACAATCATTCTTCCTCTGACTTTAATTTTTGTTCTTATTTATGATAATGTCATTTATGATAATGTCATACTTTGCTAATATAGTTCTGTAAGATATGGAATTTATGCAGAAAGATATTCCATTCATGAAATTATTGTATTGATATGTTAAAAGAATATGTTGCAGGGAATAATATACAGTCTTCTAGATAAAAAGGAGGAAGCTGCAAAACAGTTTGAAACATATCAAGCTCTTGTGCCTGAAGAGTTTCCACAGAAGGGATTTCTTGATGATATCACCTTAGCAGCAAAAGGAACATCCCCAGTAAAGTTTCAGAAGGAATTCAGAAATCAATTTTCTGACCAAAAATAG

Protein sequence

>MS.gene049351.t1

MASTATTTLFISSEFKPYLPNSLLLPRIRICNKPLSISLQPSKFRATHLSLCTCSRTPLTPSTIFSPQTTLTNFISQKVSFFLIGSFIFIAYFSRKPAFAVSVPSVDSAEILEEKILEKDSRNVEALKVVVYGKIRRGKCKEAEKFVKRLIDEEPNEVEWRLLLALCYETMGYLSKAKGLYLEILENWPLLVRALHGLAMVMHKNNEGPAVFEMLNKALELAINENKVTEERNIRILIAQMRVVQGDLEEGLKRCQDLIDQNPRDFRPYLCQGIIYSLLDKKEEAAKQFETYQALVPEEFPQKGFLDDITLAAKGTSPVKFQKEFRNQFSDQK