Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061948.t1 | XP_003618715.1 | 56.6 | 482 | 43 | 2 | 7 | 322 | 1 | 482 | 4.20E-113 | 417.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061948.t1 | F4I2H7 | 31.2 | 109 | 63 | 1 | 206 | 302 | 623 | 731 | 8.3e-09 | 62.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061948.t1 | G7KMP3 | 56.6 | 482 | 43 | 2 | 7 | 322 | 1 | 482 | 3.0e-113 | 417.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene061948 | 0.810923 | 9.05E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene061948 | 0.820214 | 7.72E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene061948 | 0.813411 | 2.59E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene061948 | 0.816974 | 4.19E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene061948 | 0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene061948 | 0.801015 | 1.10E-48 | -1.69E-46 |
| MS.gene050780 | MS.gene061948 | 0.807397 | 5.16E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene061948 | 0.800393 | 1.47E-48 | -1.69E-46 |
| MS.gene053221 | MS.gene061948 | 0.814281 | 1.67E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene061948 | 0.806488 | 8.03E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene061948 | 0.807628 | 4.61E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene061948 | 0.802679 | 5.00E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene061948 | 0.836394 | 9.60E-57 | -1.69E-46 |
| MS.gene058851 | MS.gene061948 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene061948 | 0.821914 | 3.13E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene061948 | 0.818296 | 2.11E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene061948 | -0.821485 | 3.94E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061948.t1 | MTR_6g015010 | 93.750 | 208 | 13 | 0 | 115 | 322 | 275 | 482 | 3.81e-137 | 397 |
| MS.gene061948.t1 | MTR_6g015010 | 86.813 | 91 | 12 | 0 | 7 | 97 | 1 | 91 | 7.20e-38 | 140 |
| MS.gene061948.t1 | MTR_7g013070 | 64.929 | 211 | 64 | 3 | 118 | 322 | 248 | 454 | 4.40e-86 | 266 |
| MS.gene061948.t1 | MTR_3g064800 | 47.009 | 117 | 60 | 1 | 206 | 322 | 49 | 163 | 2.41e-26 | 102 |
| MS.gene061948.t1 | MTR_3g064800 | 47.009 | 117 | 60 | 1 | 206 | 322 | 19 | 133 | 3.00e-26 | 101 |
| MS.gene061948.t1 | MTR_3g064800 | 47.009 | 117 | 60 | 1 | 206 | 322 | 31 | 145 | 4.20e-26 | 101 |
| MS.gene061948.t1 | MTR_4g078565 | 26.415 | 212 | 96 | 4 | 150 | 302 | 511 | 721 | 7.41e-12 | 66.6 |
| MS.gene061948.t1 | MTR_4g078565 | 26.415 | 212 | 96 | 4 | 150 | 302 | 518 | 728 | 7.57e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061948.t1 | AT5G15510 | 69.712 | 208 | 62 | 1 | 115 | 322 | 282 | 488 | 1.76e-96 | 294 |
| MS.gene061948.t1 | AT3G01015 | 65.366 | 205 | 67 | 2 | 120 | 321 | 277 | 480 | 5.42e-88 | 272 |
| MS.gene061948.t1 | AT5G15510 | 73.410 | 173 | 45 | 1 | 115 | 287 | 282 | 453 | 2.99e-82 | 256 |
| MS.gene061948.t1 | AT5G15510 | 73.410 | 173 | 45 | 1 | 115 | 287 | 282 | 453 | 2.99e-82 | 256 |
| MS.gene061948.t1 | AT5G15510 | 74.118 | 170 | 43 | 1 | 115 | 284 | 282 | 450 | 2.34e-81 | 256 |
| MS.gene061948.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 204 | 300 | 36 | 132 | 1.48e-26 | 103 |
| MS.gene061948.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 204 | 300 | 56 | 152 | 2.46e-26 | 103 |
| MS.gene061948.t1 | AT5G37478 | 52.577 | 97 | 46 | 0 | 204 | 300 | 23 | 119 | 4.94e-26 | 101 |
| MS.gene061948.t1 | AT1G03780 | 25.714 | 210 | 97 | 3 | 152 | 302 | 522 | 731 | 4.49e-13 | 70.5 |
| MS.gene061948.t1 | AT1G03780 | 25.714 | 210 | 97 | 3 | 152 | 302 | 522 | 731 | 5.07e-13 | 70.1 |
Find 60 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 5.3:+51632120 | None:intergenic |
| TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 5.3:+51634575 | None:intergenic |
| ATGTGAAACTTTGGTTCTTT+TGG | 0.287997 | 5.3:+51631711 | None:intergenic |
| TAAAGCACTTGATCTTCTTA+TGG | 0.309995 | 5.3:+51631682 | None:intergenic |
| ATGAATGGTCTGTCAAAATA+AGG | 0.323205 | 5.3:+51632102 | None:intergenic |
| AGGAATGGTGTACCTGAAAA+TGG | 0.330943 | 5.3:-51634350 | MS.gene061948:CDS |
| TCCAAGGGTTTCTTCTTCTC+TGG | 0.334067 | 5.3:+51634614 | None:intergenic |
| TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 5.3:+51634576 | None:intergenic |
| CATGGAAGACCTTGTGCAAT+AGG | 0.364761 | 5.3:+51633392 | None:intergenic |
| CTATGAAGCTTCACATCAAT+AGG | 0.379023 | 5.3:+51632528 | None:intergenic |
| GTGTGTAGCAGGAACTCTTC+TGG | 0.394499 | 5.3:-51633982 | MS.gene061948:CDS |
| TTGGAATCATCTAGTACTAT+TGG | 0.398723 | 5.3:-51633660 | MS.gene061948:CDS |
| AGAACAACAGAAAAGGGAAT+TGG | 0.400583 | 5.3:-51632360 | MS.gene061948:CDS |
| CATTACCTCGTTAGAATGAA+TGG | 0.437943 | 5.3:+51632087 | None:intergenic |
| TCGCGCGGAATTTGATCATC+AGG | 0.446879 | 5.3:-51632487 | MS.gene061948:intron |
| ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 5.3:+51633588 | None:intergenic |
| AGGAAGAGATTAGGAAATTG+AGG | 0.454828 | 5.3:-51632155 | MS.gene061948:CDS |
| TGGCTGAAGAGGAAGAGATT+AGG | 0.463010 | 5.3:-51632164 | MS.gene061948:CDS |
| GGAATTGGAAATACAACAAA+AGG | 0.463028 | 5.3:-51632345 | MS.gene061948:intron |
| AATTCGTCAGAGAAAGTTTG+TGG | 0.463296 | 5.3:-51634480 | MS.gene061948:CDS |
| TTTGATAGAACAACAGAAAA+GGG | 0.474688 | 5.3:-51632366 | MS.gene061948:CDS |
| CCATGGACTATTGATGAACC+TGG | 0.478943 | 5.3:-51633374 | MS.gene061948:CDS |
| GTTTGATAGAACAACAGAAA+AGG | 0.481566 | 5.3:-51632367 | MS.gene061948:CDS |
| TCCCTTACAGTTGGCTGAAG+AGG | 0.485828 | 5.3:-51632175 | MS.gene061948:intron |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5.3:-51632517 | MS.gene061948:CDS |
| GTTCAAATTCTCAATTTCCA+AGG | 0.500670 | 5.3:+51634598 | None:intergenic |
| GTACTATTGGAGGAAGGAGG+TGG | 0.500694 | 5.3:-51633647 | MS.gene061948:CDS |
| AGAAGAACAGTTGATGAAGA+AGG | 0.503039 | 5.3:-51633453 | MS.gene061948:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5.3:-51632518 | MS.gene061948:CDS |
| TTCAAATTCTCAATTTCCAA+GGG | 0.511479 | 5.3:+51634599 | None:intergenic |
| AAATGGTAAAGTAATGCATT+TGG | 0.516438 | 5.3:-51634333 | MS.gene061948:CDS |
| CTCTGACGAATTCTCTTCTG+CGG | 0.520745 | 5.3:+51634491 | None:intergenic |
| CTATTGCACAAGGTCTTCCA+TGG | 0.526302 | 5.3:-51633391 | MS.gene061948:CDS |
| GTCAGAAACCTTTCAAGCTA+AGG | 0.529285 | 5.3:-51633596 | MS.gene061948:CDS |
| TGGTGAGGTATGTGAAACTT+TGG | 0.533377 | 5.3:+51631702 | None:intergenic |
| TAAAGTAATGCATTTGGTGA+AGG | 0.534433 | 5.3:-51634327 | MS.gene061948:CDS |
| TGATCAAAGTCCTAAGAAAA+CGG | 0.535593 | 5.3:-51634438 | MS.gene061948:CDS |
| AGAGATTAGGAAATTGAGGA+AGG | 0.551486 | 5.3:-51632151 | MS.gene061948:CDS |
| TTATTCGATGATTTCTGAAG+TGG | 0.555085 | 5.3:+51634551 | None:intergenic |
| ACCAGAGAAGAAGAAACCCT+TGG | 0.560006 | 5.3:-51634615 | MS.gene061948:CDS |
| TATTCGATGATTTCTGAAGT+GGG | 0.560596 | 5.3:+51634552 | None:intergenic |
| CCAGGTTCATCAATAGTCCA+TGG | 0.560825 | 5.3:+51633374 | None:intergenic |
| CACTTGATCTTCTTATGGTG+AGG | 0.566706 | 5.3:+51631687 | None:intergenic |
| TTTGTGCTTTCTTTCACAGG+AGG | 0.566913 | 5.3:+51632552 | None:intergenic |
| GAATCATCTAGTACTATTGG+AGG | 0.568710 | 5.3:-51633657 | MS.gene061948:CDS |
| TAAGTGTGTTTGCGAAGCAA+TGG | 0.571703 | 5.3:-51634381 | MS.gene061948:CDS |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 5.3:+51632108 | None:intergenic |
| CATGGACTATTGATGAACCT+GGG | 0.583088 | 5.3:-51633373 | MS.gene061948:CDS |
| CATCTAGTACTATTGGAGGA+AGG | 0.619078 | 5.3:-51633653 | MS.gene061948:CDS |
| AAATGTGGAGAGAATAGTGA+TGG | 0.619254 | 5.3:-51634407 | MS.gene061948:CDS |
| GCAATGGAAGAAACAAGGAA+TGG | 0.646394 | 5.3:-51634365 | MS.gene061948:CDS |
| GCGAAGCAATGGAAGAAACA+AGG | 0.647299 | 5.3:-51634370 | MS.gene061948:CDS |
| CTAGTACTATTGGAGGAAGG+AGG | 0.649542 | 5.3:-51633650 | MS.gene061948:CDS |
| TTTGAGGGCAATTGATCGCG+CGG | 0.653049 | 5.3:-51632502 | MS.gene061948:CDS |
| ATGGACTATTGATGAACCTG+GGG | 0.661937 | 5.3:-51633372 | MS.gene061948:intron |
| TGTAGCAGGAACTCTTCTGG+TGG | 0.669446 | 5.3:-51633979 | MS.gene061948:CDS |
| ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 5.3:-51633589 | MS.gene061948:intron |
| ATGAGAGTACCTATTGCACA+AGG | 0.699289 | 5.3:-51633401 | MS.gene061948:CDS |
| ACAGACCATTCATTCTAACG+AGG | 0.703721 | 5.3:-51632092 | MS.gene061948:intron |
| ATAATGCTATTGTAGCAAAG+GGG | 0.728973 | 5.3:-51633485 | MS.gene061948:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTACATTTATACT+TGG | + | chr5.3:51633024-51633043 | None:intergenic | 10.0% |
| !! | AGTTTAAAAATTCTTTACAT+TGG | - | chr5.3:51633281-51633300 | MS.gene061948:intron | 15.0% |
| !!! | TAATTGATGATACAAATAAT+TGG | - | chr5.3:51632716-51632735 | MS.gene061948:intron | 15.0% |
| !!! | TTATTTATATTTTGGTTTGA+AGG | - | chr5.3:51634527-51634546 | MS.gene061948:CDS | 15.0% |
| !!! | TTGTCTCATTATTTATATTT+TGG | - | chr5.3:51634519-51634538 | MS.gene061948:CDS | 15.0% |
| !! | AAAACTTTCTGTTTATTTGA+TGG | - | chr5.3:51633243-51633262 | MS.gene061948:intron | 20.0% |
| !! | ACTATAATACTAATGAAGAT+TGG | - | chr5.3:51632536-51632555 | MS.gene061948:CDS | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5.3:51633649-51633668 | MS.gene061948:CDS | 20.0% |
| !! | TTAAAAATTCTTTACATTGG+CGG | - | chr5.3:51633284-51633303 | MS.gene061948:intron | 20.0% |
| !!! | ATTTTAGATAAAGGAAAACA+TGG | + | chr5.3:51634069-51634088 | None:intergenic | 20.0% |
| !!! | GTAATTTTTTAATCAAGCAT+AGG | - | chr5.3:51633033-51633052 | MS.gene061948:intron | 20.0% |
| !!! | TCATTTTTGCAAAATGTTAT+CGG | - | chr5.3:51632475-51632494 | MS.gene061948:intron | 20.0% |
| ! | AAATGGTAAAGTAATGCATT+TGG | - | chr5.3:51631949-51631968 | MS.gene061948:intron | 25.0% |
| ! | AGAGGTTACTTAGTATAAAA+AGG | - | chr5.3:51631984-51632003 | MS.gene061948:intron | 25.0% |
| ! | ATACACACTTTAATTGATCT+CGG | + | chr5.3:51634448-51634467 | None:intergenic | 25.0% |
| ! | ATAGCAATTCTCAATTAGAA+CGG | - | chr5.3:51633423-51633442 | MS.gene061948:CDS | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5.3:51633389-51633408 | None:intergenic | 25.0% |
| ! | GACAAAAAGAGACAAAATAA+TGG | + | chr5.3:51634504-51634523 | None:intergenic | 25.0% |
| ! | GAGGTTACTTAGTATAAAAA+GGG | - | chr5.3:51631985-51632004 | MS.gene061948:intron | 25.0% |
| ! | TATAATGCTATTGTAGCAAA+GGG | - | chr5.3:51632796-51632815 | MS.gene061948:intron | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5.3:51633847-51633866 | None:intergenic | 25.0% |
| ! | TTAGCGATTCACTATTAATA+AGG | - | chr5.3:51632559-51632578 | MS.gene061948:CDS | 25.0% |
| ! | TTCAAATTCTCAATTTCCAA+GGG | + | chr5.3:51631686-51631705 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5.3:51633848-51633867 | None:intergenic | 25.0% |
| ! | TTCGATTAGAAAACTCATTA+GGG | + | chr5.3:51631709-51631728 | None:intergenic | 25.0% |
| ! | TTTCGATTAGAAAACTCATT+AGG | + | chr5.3:51631710-51631729 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+GGG | - | chr5.3:51633916-51633935 | MS.gene061948:intron | 25.0% |
| !! | AACGTCAACATTTTAGATAA+AGG | + | chr5.3:51634078-51634097 | None:intergenic | 25.0% |
| !! | ATTTTGCACTGTTATGAATT+CGG | - | chr5.3:51634476-51634495 | MS.gene061948:CDS | 25.0% |
| !! | TGACATATCATTTTGTGATT+CGG | - | chr5.3:51634286-51634305 | MS.gene061948:intron | 25.0% |
| !! | TTTATCTAAAATGTTGACGT+TGG | - | chr5.3:51634077-51634096 | MS.gene061948:intron | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | - | chr5.3:51632761-51632780 | MS.gene061948:intron | 25.0% |
| !!! | AGTTTCTTCAAATTTTTCAG+TGG | - | chr5.3:51632752-51632771 | MS.gene061948:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | + | chr5.3:51634426-51634445 | None:intergenic | 25.0% |
| !!! | TTTAAAGTTGATTTGACGAA+AGG | - | chr5.3:51634389-51634408 | MS.gene061948:CDS | 25.0% |
| AAACATGGCAACTCAAAATT+AGG | + | chr5.3:51634054-51634073 | None:intergenic | 30.0% | |
| AATTCAGTTTCAGTGGAATT+AGG | - | chr5.3:51633564-51633583 | MS.gene061948:intron | 30.0% | |
| ACATGTGATGTAATGAACAT+TGG | - | chr5.3:51632446-51632465 | MS.gene061948:intron | 30.0% | |
| AGAGAATGAGAAGAAGAATA+AGG | - | chr5.3:51632033-51632052 | MS.gene061948:intron | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5.3:51632959-51632978 | None:intergenic | 30.0% | |
| ATAATGCTATTGTAGCAAAG+GGG | - | chr5.3:51632797-51632816 | MS.gene061948:intron | 30.0% | |
| ATCGTAATTGCATTACATGA+TGG | + | chr5.3:51633103-51633122 | None:intergenic | 30.0% | |
| ATGAATGGTCTGTCAAAATA+AGG | + | chr5.3:51634183-51634202 | None:intergenic | 30.0% | |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5.3:51633846-51633865 | None:intergenic | 30.0% | |
| CTATAATGCTATTGTAGCAA+AGG | - | chr5.3:51632795-51632814 | MS.gene061948:intron | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5.3:51633314-51633333 | MS.gene061948:intron | 30.0% | |
| GGAATTGGAAATACAACAAA+AGG | - | chr5.3:51633937-51633956 | MS.gene061948:intron | 30.0% | |
| GTTCAAATTCTCAATTTCCA+AGG | + | chr5.3:51631687-51631706 | None:intergenic | 30.0% | |
| GTTTGATAGAACAACAGAAA+AGG | - | chr5.3:51633915-51633934 | MS.gene061948:intron | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5.3:51632982-51633001 | MS.gene061948:intron | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | - | chr5.3:51634357-51634376 | MS.gene061948:CDS | 30.0% | |
| TCGTAATTGCATTACATGAT+GGG | + | chr5.3:51633102-51633121 | None:intergenic | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5.3:51633393-51633412 | MS.gene061948:CDS | 30.0% | |
| TGATCAAAGTCCTAAGAAAA+CGG | - | chr5.3:51631844-51631863 | MS.gene061948:intron | 30.0% | |
| TGTACTAAATTCAGTTTCAG+TGG | - | chr5.3:51633557-51633576 | MS.gene061948:intron | 30.0% | |
| TTACGATTATAGCTTATGTC+TGG | - | chr5.3:51633116-51633135 | MS.gene061948:intron | 30.0% | |
| TTGGAATCATCTAGTACTAT+TGG | - | chr5.3:51632622-51632641 | MS.gene061948:intron | 30.0% | |
| ! | TAAAGCACTTGATCTTCTTA+TGG | + | chr5.3:51634603-51634622 | None:intergenic | 30.0% |
| ! | TAAAGTAATGCATTTGGTGA+AGG | - | chr5.3:51631955-51631974 | MS.gene061948:intron | 30.0% |
| ! | TGCATTACTTTACCATTTTC+AGG | + | chr5.3:51631947-51631966 | None:intergenic | 30.0% |
| ! | TTACACAAAACCGTTTTCTT+AGG | + | chr5.3:51631857-51631876 | None:intergenic | 30.0% |
| ! | TTATTCGATGATTTCTGAAG+TGG | + | chr5.3:51631734-51631753 | None:intergenic | 30.0% |
| ! | TTGATTTGAGATGTGAAAGT+TGG | + | chr5.3:51633974-51633993 | None:intergenic | 30.0% |
| ! | TTTAAATTTTCACGCACTGT+CGG | - | chr5.3:51633147-51633166 | MS.gene061948:intron | 30.0% |
| !! | AAAACGGTTTTGTGTAAATG+TGG | - | chr5.3:51631860-51631879 | MS.gene061948:intron | 30.0% |
| !! | TATTCGATGATTTCTGAAGT+GGG | + | chr5.3:51631733-51631752 | None:intergenic | 30.0% |
| !!! | ATGTGAAACTTTGGTTCTTT+TGG | + | chr5.3:51634574-51634593 | None:intergenic | 30.0% |
| !!! | TTTCTGTGTTTTTTAGAGCT+TGG | - | chr5.3:51632603-51632622 | MS.gene061948:intron | 30.0% |
| !!! | TTTGGTTCTTTTGGTATAGT+TGG | + | chr5.3:51634565-51634584 | None:intergenic | 30.0% |
| AAATGTGGAGAGAATAGTGA+TGG | - | chr5.3:51631875-51631894 | MS.gene061948:intron | 35.0% | |
| AATTCGTCAGAGAAAGTTTG+TGG | - | chr5.3:51631802-51631821 | MS.gene061948:intron | 35.0% | |
| AGAACAACAGAAAAGGGAAT+TGG | - | chr5.3:51633922-51633941 | MS.gene061948:intron | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5.3:51633517-51633536 | None:intergenic | 35.0% | |
| AGAGATTAGGAAATTGAGGA+AGG | - | chr5.3:51634131-51634150 | MS.gene061948:intron | 35.0% | |
| AGGAAGAGATTAGGAAATTG+AGG | - | chr5.3:51634127-51634146 | MS.gene061948:intron | 35.0% | |
| AGTACATATCAGCTGACATA+TGG | + | chr5.3:51633543-51633562 | None:intergenic | 35.0% | |
| AGTTCATCTTCATCCTTAAC+AGG | + | chr5.3:51632070-51632089 | None:intergenic | 35.0% | |
| ATTTGTGAATAAGGCATGTC+CGG | - | chr5.3:51632410-51632429 | MS.gene061948:intron | 35.0% | |
| CAGAAGAATGCTTAGACAAA+TGG | + | chr5.3:51633692-51633711 | None:intergenic | 35.0% | |
| CATTACCTCGTTAGAATGAA+TGG | + | chr5.3:51634198-51634217 | None:intergenic | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5.3:51633757-51633776 | None:intergenic | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5.3:51633765-51633784 | MS.gene061948:intron | 35.0% | |
| GAATCATCTAGTACTATTGG+AGG | - | chr5.3:51632625-51632644 | MS.gene061948:intron | 35.0% | |
| GATGTGAAAGTTGGAAAACA+TGG | + | chr5.3:51634017-51634036 | None:intergenic | 35.0% | |
| GGTATATATTCCCTTACAGT+TGG | - | chr5.3:51634098-51634117 | MS.gene061948:intron | 35.0% | |
| GGTTACAGTTACATCTTCTT+GGG | - | chr5.3:51632120-51632139 | MS.gene061948:CDS | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5.3:51633490-51633509 | None:intergenic | 35.0% | |
| TCAATTAGAACGGTACATTG+TGG | - | chr5.3:51633433-51633452 | MS.gene061948:CDS | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5.3:51633764-51633783 | MS.gene061948:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5.3:51633877-51633896 | MS.gene061948:intron | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5.3:51633491-51633510 | None:intergenic | 35.0% | |
| ! | ACAAACACAGAAAGTACATG+AGG | + | chr5.3:51633610-51633629 | None:intergenic | 35.0% |
| ! | CATGCCTTATTCACAAATGT+CGG | + | chr5.3:51632408-51632427 | None:intergenic | 35.0% |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5.3:51634026-51634045 | None:intergenic | 35.0% |
| ! | GAACTATCTGAAGTTGTTTC+TGG | - | chr5.3:51632085-51632104 | MS.gene061948:intron | 35.0% |
| ! | TTAAATTTTCACGCACTGTC+GGG | - | chr5.3:51633148-51633167 | MS.gene061948:intron | 35.0% |
| !! | AGAAGAACAGTTGATGAAGA+AGG | - | chr5.3:51632829-51632848 | MS.gene061948:intron | 35.0% |
| !! | ATCTGAAGTTGTTTCTGGAT+TGG | - | chr5.3:51632090-51632109 | MS.gene061948:intron | 35.0% |
| !! | ATGAGGTATTGTGAGCAAAA+AGG | + | chr5.3:51633593-51633612 | None:intergenic | 35.0% |
| !! | ATTTGGTGAAGGATTTTGAG+AGG | - | chr5.3:51631966-51631985 | MS.gene061948:intron | 35.0% |
| !! | GATGTGAAAGTTGGTAAACA+TGG | + | chr5.3:51633965-51633984 | None:intergenic | 35.0% |
| !! | TGTTTCTGGATTGGATCAAA+GGG | - | chr5.3:51632099-51632118 | MS.gene061948:CDS | 35.0% |
| !! | TTGTTTCTGGATTGGATCAA+AGG | - | chr5.3:51632098-51632117 | MS.gene061948:CDS | 35.0% |
| AAGGGAGAAAGAGAAGAATG+AGG | - | chr5.3:51632003-51632022 | MS.gene061948:intron | 40.0% | |
| ACAGACCATTCATTCTAACG+AGG | - | chr5.3:51634190-51634209 | MS.gene061948:intron | 40.0% | |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5.3:51633528-51633547 | None:intergenic | 40.0% | |
| AGGAATGGTGTACCTGAAAA+TGG | - | chr5.3:51631932-51631951 | MS.gene061948:intron | 40.0% | |
| CACTTGATCTTCTTATGGTG+AGG | + | chr5.3:51634598-51634617 | None:intergenic | 40.0% | |
| CATCTAGTACTATTGGAGGA+AGG | - | chr5.3:51632629-51632648 | MS.gene061948:intron | 40.0% | |
| CATGACACAGTTATCCATCT+TGG | - | chr5.3:51634334-51634353 | MS.gene061948:CDS | 40.0% | |
| CCTTATTCACAAATGTCGGT+CGG | + | chr5.3:51632404-51632423 | None:intergenic | 40.0% | |
| CGATTATAGCTTATGTCTGG+TGG | - | chr5.3:51633119-51633138 | MS.gene061948:intron | 40.0% | |
| CTTGTGTCAATTGTTGTGTG+TGG | - | chr5.3:51632255-51632274 | MS.gene061948:intron | 40.0% | |
| GAAAGAGAAGAATGAGGATG+AGG | - | chr5.3:51632009-51632028 | MS.gene061948:intron | 40.0% | |
| GCAATGGAAGAAACAAGGAA+TGG | - | chr5.3:51631917-51631936 | MS.gene061948:intron | 40.0% | |
| GGGTTACAGTTACATCTTCT+TGG | - | chr5.3:51632119-51632138 | MS.gene061948:CDS | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | + | chr5.3:51634177-51634196 | None:intergenic | 40.0% | |
| GGTGATGAAACAACCTGTTA+AGG | - | chr5.3:51632054-51632073 | MS.gene061948:intron | 40.0% | |
| GTCAGAAACCTTTCAAGCTA+AGG | - | chr5.3:51632686-51632705 | MS.gene061948:intron | 40.0% | |
| GTGTTAGTGTTTGTGACATG+CGG | - | chr5.3:51632511-51632530 | MS.gene061948:CDS | 40.0% | |
| GTTACATCTTCTTGGGATTG+TGG | - | chr5.3:51632127-51632146 | MS.gene061948:CDS | 40.0% | |
| TAAGTGTGTTTGCGAAGCAA+TGG | - | chr5.3:51631901-51631920 | MS.gene061948:intron | 40.0% | |
| TATCCTAGCATAACATGGCA+AGG | - | chr5.3:51633398-51633417 | MS.gene061948:CDS | 40.0% | |
| TGAATGCTTAACTGTGTAGG+TGG | - | chr5.3:51633880-51633899 | MS.gene061948:intron | 40.0% | |
| TGGTGAGGTATGTGAAACTT+TGG | + | chr5.3:51634583-51634602 | None:intergenic | 40.0% | |
| TTACATCACATGTGTCGTGT+TGG | + | chr5.3:51632439-51632458 | None:intergenic | 40.0% | |
| TTGAGATCGAATGACCAAGA+TGG | + | chr5.3:51634351-51634370 | None:intergenic | 40.0% | |
| TTTGTGCTTTCTTTCACAGG+AGG | + | chr5.3:51633733-51633752 | None:intergenic | 40.0% | |
| ! | ATGGACTATTGATGAACCTG+GGG | - | chr5.3:51632910-51632929 | MS.gene061948:intron | 40.0% |
| ! | CATGGACTATTGATGAACCT+GGG | - | chr5.3:51632909-51632928 | MS.gene061948:intron | 40.0% |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5.3:51633069-51633088 | None:intergenic | 40.0% |
| ! | TAAATTTTCACGCACTGTCG+GGG | - | chr5.3:51633149-51633168 | MS.gene061948:intron | 40.0% |
| !! | ATGAGAGTACCTATTGCACA+AGG | - | chr5.3:51632881-51632900 | MS.gene061948:intron | 40.0% |
| !! | GGTTTTGTGCTTTCTTTCAC+AGG | + | chr5.3:51633736-51633755 | None:intergenic | 40.0% |
| ACCAGAGAAGAAGAAACCCT+TGG | - | chr5.3:51631667-51631686 | MS.gene061948:CDS | 45.0% | |
| ACCTTTCAAGCTAAGGACTG+AGG | - | chr5.3:51632693-51632712 | MS.gene061948:intron | 45.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5.3:51632893-51632912 | None:intergenic | 45.0% | |
| CCAGGTTCATCAATAGTCCA+TGG | + | chr5.3:51632911-51632930 | None:intergenic | 45.0% | |
| CCGACCGACATTTGTGAATA+AGG | - | chr5.3:51632401-51632420 | MS.gene061948:intron | 45.0% | |
| CTAGTACTATTGGAGGAAGG+AGG | - | chr5.3:51632632-51632651 | MS.gene061948:intron | 45.0% | |
| CTATTGATGAACCTGGGGTA+AGG | - | chr5.3:51632915-51632934 | MS.gene061948:intron | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5.3:51632891-51632910 | MS.gene061948:intron | 45.0% | |
| CTCTGACGAATTCTCTTCTG+CGG | + | chr5.3:51631794-51631813 | None:intergenic | 45.0% | |
| GCGAAGCAATGGAAGAAACA+AGG | - | chr5.3:51631912-51631931 | MS.gene061948:intron | 45.0% | |
| TCCAAGGGTTTCTTCTTCTC+TGG | + | chr5.3:51631671-51631690 | None:intergenic | 45.0% | |
| TCCTCTTCAGCCAACTGTAA+GGG | + | chr5.3:51634111-51634130 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5.3:51633404-51633423 | None:intergenic | 45.0% | |
| TCTTCTTGGGATTGTGGAAG+TGG | - | chr5.3:51632133-51632152 | MS.gene061948:CDS | 45.0% | |
| TGGCTGAAGAGGAAGAGATT+AGG | - | chr5.3:51634118-51634137 | MS.gene061948:intron | 45.0% | |
| TTCCTCTTCAGCCAACTGTA+AGG | + | chr5.3:51634112-51634131 | None:intergenic | 45.0% | |
| ! | ACCTCAGTCCTTAGCTTGAA+AGG | + | chr5.3:51632697-51632716 | None:intergenic | 45.0% |
| ! | CCATGGACTATTGATGAACC+TGG | - | chr5.3:51632908-51632927 | MS.gene061948:intron | 45.0% |
| ! | TTACATGATGGGACAGTCAG+AGG | + | chr5.3:51633091-51633110 | None:intergenic | 45.0% |
| ! | TTTTGTGCAGTGTGTGTAGC+AGG | - | chr5.3:51632289-51632308 | MS.gene061948:intron | 45.0% |
| !! | TGGCTATATTGGTGATGCAC+TGG | - | chr5.3:51632772-51632791 | MS.gene061948:intron | 45.0% |
| ACATGTGTCGTGTTGGACAC+CGG | + | chr5.3:51632432-51632451 | None:intergenic | 50.0% | |
| ATGGGACAGTCAGAGGCTAA+TGG | + | chr5.3:51633084-51633103 | None:intergenic | 50.0% | |
| GGGATTGTGGAAGTGGAAGA+AGG | - | chr5.3:51632140-51632159 | MS.gene061948:CDS | 50.0% | |
| GTACTATTGGAGGAAGGAGG+TGG | - | chr5.3:51632635-51632654 | MS.gene061948:intron | 50.0% | |
| GTGTGTAGCAGGAACTCTTC+TGG | - | chr5.3:51632300-51632319 | MS.gene061948:intron | 50.0% | |
| TCCCTTACAGTTGGCTGAAG+AGG | - | chr5.3:51634107-51634126 | MS.gene061948:intron | 50.0% | |
| TCGCGCGGAATTTGATCATC+AGG | - | chr5.3:51633795-51633814 | MS.gene061948:intron | 50.0% | |
| TGAGAAATCGACCTTACCCC+AGG | + | chr5.3:51632929-51632948 | None:intergenic | 50.0% | |
| TGTAGCAGGAACTCTTCTGG+TGG | - | chr5.3:51632303-51632322 | MS.gene061948:intron | 50.0% | |
| TTTGAGGGCAATTGATCGCG+CGG | - | chr5.3:51633780-51633799 | MS.gene061948:intron | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | + | chr5.3:51634165-51634184 | None:intergenic | 50.0% |
| GTCGGTCGGTACTATAGAGC+TGG | + | chr5.3:51632390-51632409 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 51631644 | 51634660 | 51631644 | ID=MS.gene061948 |
| chr5.3 | mRNA | 51631644 | 51634660 | 51631644 | ID=MS.gene061948.t1;Parent=MS.gene061948 |
| chr5.3 | exon | 51634317 | 51634660 | 51634317 | ID=MS.gene061948.t1.exon1;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51634317 | 51634660 | 51634317 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51633960 | 51634005 | 51633960 | ID=MS.gene061948.t1.exon2;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51633960 | 51634005 | 51633960 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51633590 | 51633685 | 51633590 | ID=MS.gene061948.t1.exon3;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51633590 | 51633685 | 51633590 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51633373 | 51633492 | 51633373 | ID=MS.gene061948.t1.exon4;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51633373 | 51633492 | 51633373 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51632488 | 51632586 | 51632488 | ID=MS.gene061948.t1.exon5;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51632488 | 51632586 | 51632488 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51632346 | 51632405 | 51632346 | ID=MS.gene061948.t1.exon6;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51632346 | 51632405 | 51632346 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51632093 | 51632187 | 51632093 | ID=MS.gene061948.t1.exon7;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51632093 | 51632187 | 51632093 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| chr5.3 | exon | 51631644 | 51631755 | 51631644 | ID=MS.gene061948.t1.exon8;Parent=MS.gene061948.t1 |
| chr5.3 | CDS | 51631644 | 51631755 | 51631644 | ID=cds.MS.gene061948.t1;Parent=MS.gene061948.t1 |
| Gene Sequence |
| Protein sequence |
