AlfalfaGEDB | MS.gene058636

M. sativa cultivar XinJiangDaYe / MS.gene058636

KEGG: K20476
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058636.t1	XP_003624005.2	99.5	191	1	0	1	191	905	1095	5.00E-98	367.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058636.t1	Q2HUD0	99.5	191	1	0	1	191	905	1095	3.6e-98	367.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene058636	0.802356	5.83E-49	-1.69E-46
MS.gene049159	MS.gene058636	0.804272	2.34E-49	-1.69E-46
MS.gene049343	MS.gene058636	0.803314	3.70E-49	-1.69E-46
MS.gene049435	MS.gene058636	0.81213	4.95E-51	-1.69E-46
MS.gene049501	MS.gene058636	0.809511	1.82E-50	-1.69E-46
MS.gene049647	MS.gene058636	0.800314	1.53E-48	-1.69E-46
MS.gene049821	MS.gene058636	0.810147	1.33E-50	-1.69E-46
MS.gene049850	MS.gene058636	0.81343	2.57E-51	-1.69E-46
MS.gene050156	MS.gene058636	0.830282	3.21E-55	-1.69E-46
MS.gene050228	MS.gene058636	0.804646	1.95E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058636.t1	MTR_7g078170	99.476	191	1	0	1	191	905	1095	9.86e-127	383

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058636.t1	AT3G61480	74.346	191	48	1	1	191	859	1048	8.27e-85	270
MS.gene058636.t1	AT5G28350	74.346	191	48	1	1	191	865	1054	8.39e-85	270
MS.gene058636.t1	AT3G61480	74.346	191	48	1	1	191	901	1090	1.11e-84	271
MS.gene058636.t1	AT5G28350	74.346	191	48	1	1	191	905	1094	1.27e-84	270

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Find 41 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATGCAAGTTACTTGA+TGG	0.406173	7.4:+28123264	MS.gene058636:CDS
AAACTGTCTCCTCGATTTCT+AGG	0.296872	7.4:+28123053	MS.gene058636:CDS
AAGCTTGTAGCATTTGTAAA+AGG	0.300184	7.4:+28123304	MS.gene058636:CDS
AAGGTATGGAAGTGCTCGGC+TGG	0.458411	7.4:+28123456	MS.gene058636:CDS
AGAAAATAGCCTAGAAATCG+AGG	0.584176	7.4:-28123062	None:intergenic
AGCACTTTGTTCCTTGAATG+AGG	0.535069	7.4:-28123212	None:intergenic
AGCTTACAGCAGCACCCTGC+AGG	0.493973	7.4:+28124847	MS.gene058636:CDS
AGGAATATCTACAACGCGAA+AGG	0.591090	7.4:+28123437	MS.gene058636:intron
AGGCACTCAGTTTGATTTAG+TGG	0.326832	7.4:+28123324	MS.gene058636:CDS
ATATGAGCTTGCTGGGGAGC+TGG	0.469642	7.4:+28122866	MS.gene058636:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTTGTAGCATTTGTAAA+AGG	+	chr7.4:28123304-28123323	MS.gene058636:CDS	30.0%
AAGGGGAGAAAAAAGTTATT+CGG	-	chr7.4:28124647-28124666	None:intergenic	30.0%
ACACACATACCTATAGTAAA+AGG	-	chr7.4:28123964-28123983	None:intergenic	30.0%
ACTGAGATATGAATTATGGT+GGG	+	chr7.4:28124194-28124213	MS.gene058636:intron	30.0%
AGAGCATAGAATTAAGACTT+CGG	-	chr7.4:28123650-28123669	None:intergenic	30.0%
ATGCTCTCATATGATATATG+AGG	+	chr7.4:28123783-28123802	MS.gene058636:intron	30.0%
CAGGGAAAGCAATATATTAT+TGG	-	chr7.4:28123605-28123624	None:intergenic	30.0%
CATACCTATAGTAAAAGGTT+TGG	-	chr7.4:28123959-28123978	None:intergenic	30.0%
CTTCAATAGGAAAAGGAAAA+GGG	-	chr7.4:28124665-28124684	None:intergenic	30.0%
TATAGTAAAAGGTTTGGCTA+CGG	-	chr7.4:28123953-28123972	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	28122840	28124868	28122840	ID=MS.gene058636
chr7.4	mRNA	28122840	28124868	28122840	ID=MS.gene058636.t1;Parent=MS.gene058636
chr7.4	exon	28122840	28122887	28122840	ID=MS.gene058636.t1.exon1;Parent=MS.gene058636.t1
chr7.4	CDS	28122840	28122887	28122840	ID=cds.MS.gene058636.t1;Parent=MS.gene058636.t1
chr7.4	exon	28122993	28123123	28122993	ID=MS.gene058636.t1.exon2;Parent=MS.gene058636.t1
chr7.4	CDS	28122993	28123123	28122993	ID=cds.MS.gene058636.t1;Parent=MS.gene058636.t1
chr7.4	exon	28123210	28123345	28123210	ID=MS.gene058636.t1.exon3;Parent=MS.gene058636.t1
chr7.4	CDS	28123210	28123345	28123210	ID=cds.MS.gene058636.t1;Parent=MS.gene058636.t1
chr7.4	exon	28123439	28123516	28123439	ID=MS.gene058636.t1.exon4;Parent=MS.gene058636.t1
chr7.4	CDS	28123439	28123516	28123439	ID=cds.MS.gene058636.t1;Parent=MS.gene058636.t1
chr7.4	exon	28124043	28124159	28124043	ID=MS.gene058636.t1.exon5;Parent=MS.gene058636.t1
chr7.4	CDS	28124043	28124159	28124043	ID=cds.MS.gene058636.t1;Parent=MS.gene058636.t1
chr7.4	exon	28124806	28124868	28124806	ID=MS.gene058636.t1.exon6;Parent=MS.gene058636.t1
chr7.4	CDS	28124806	28124868	28124806	ID=cds.MS.gene058636.t1;Parent=MS.gene058636.t1

Gene Sequence

>MS.gene058636

ATGCAGGCAACACTCGTTGATTCTTTATATGAGCTTGCTGGGGAGCTGGTAATTTCTTCAAACGCTATCAGATTATTCACTTCAGCTTGTCAATTAATATATCATACAAGAGATTATGACTTCTTGCATAAATATTTTCTTTTGGGTCCTCAGGTGAGGTTCTTACTAAGATCTGGTAGGGAGTATGACCAAGCATCATCAGCTGATTCAGATAAACTGTCTCCTCGATTTCTAGGCTATTTTCTTTTTCGTTCTGCTGAGCGAAAGCAAGCATTGGATAAAAGGTTCATGTACAATTTAGTGAATTTTTTTCTCTTTTCCTAGCATCAAAATTACCAATCATACTAACAAATATTTTTCTTTGGAGCAGCACCTCATTCAAGGAACAAAGTGCTCATGTCACCTCAGTTAAGAATATTTTAGAAAACCATGCAAGTTACTTGATGGCTGGGAAAGAGCTCTCCAAGCTTGTAGCATTTGTAAAAGGCACTCAGTTTGATTTAGTGGTAAGATCTTGCTGATTGACTTGTTCTAATCCCCTTATGATAATTTTCCTTCATTTTAAAGTGTGTAAATCGTTCAATGATAACCAATCACAGGAATATCTACAACGCGAAAGGTATGGAAGTGCTCGGCTGGAGAATTTCGCTTCCGGGCTTGAACTAATAAGCCAAAAGGTTTGAGATTTTAACATTTTGAAATCAAAACTTATTTTCTGATTGTTCCCTGTGCTTCATTTCATTGGTCTTAAATTTCATCGACCCAATAATATATTGCTTTCCCTGTACTTCCTTGATATTTTATTTACCGAAGTCTTAATTCTATGCTCTGTGGTGATACTAAGTGGTGGTGCACATTTGGTTGTTTAGGTGTGGGTTTATTAGTTAATAACTATGCCACTTAAAAGTATAACCTAATAAATGGGATCAAACTTTTGCTCTAAATGCTCTCATATGATATATGAGGATACTTTATCCTCCTGATATTCCTTTTTTTTTCCTTCAAAATATTCCCTTTTGTAAGAAAAAAAATCTCATCAAAATCGAAATATACTACAATTCGACAAATTATCATTAAGATCTTAGATGCAAGAACACTGATTATTTACTGCCGTAGCCAAACCTTTTACTATAGGTATGTGTGTGTAAATTTTTTCCTTGATCTATTTATTCTATGTTAATGAATACTGTTCTGTGTTATCAGCTTCAAATGGAAACATTACAGAGTCGATTGGATGCGGACTTTCTCCTGGCTCATATGTGCTCTGTCAAATTTAAGGAATGGATAGTTGTTCTGGCTACTCTCTTGAGACGTTCTGAGGTATGTTTAGGTTCATTGTGTACTAGACATTGACACTGAGATATGAATTATGGTGGGATAGTATCAACAGTAGTGTTAAGATTTTAGAAAAAAATGGAAAGGAGAGAATGAGATTAAGGAAGCTTCTCAATTAAAATAAATTATGGTTCTTCACTTACGAAAATAAGTCTTTATAACTTATAAACTTATATGTTTATGGAGAAGTGTTTTTTTTTTTTAAAGAAGCTAAATTAGCCCACTCAAATTCGCACCAGAGAGAAGCTAATTGTTAAAAAAGAGTTTCTAATAAAATTGAAATACAAAAGCTAATTTAATTTATACAAGAAGCTATTGTTTAAAAAATTCATTGTTACTGCAAGATTGCTTTAGTATTTATTTTTCGGGACGTGTGATGAGAAGTTAATCACAATGAACTTTGAGATTTCCCTGCAAATAGGTTGTGCTTACTGTTTAGACTTTCTTGCTGGAAATATGTCACAATATCCCGAATAACTTTTTTCTCCCCTTTTCCTTTTCCTATTGAAGAGATGACCAAATGCGTCAAAGGGATATACTTTTACATATATTCATCACTTATGGATCTTTTGCTATTTTTAGAGAAGGTTCACTTTGATGATTAGCGTATTCTTTTGTTGATCTTTTACAGGTTCTTTTTGACTTATTCCGTCATGATTTTCGGTTATGGAAAGCTTACAGCAGCACCCTGCAG

Protein sequence

>MS.gene058636.t1

MQATLVDSLYELAGELVRFLLRSGREYDQASSADSDKLSPRFLGYFLFRSAERKQALDKSTSFKEQSAHVTSVKNILENHASYLMAGKELSKLVAFVKGTQFDLVEYLQRERYGSARLENFASGLELISQKLQMETLQSRLDADFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLFRHDFRLWKAYSSTLQ