Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062255.t1 | XP_003591816.1 | 97.8 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 2.70E-93 | 351.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062255.t1 | P32294 | 70.8 | 192 | 42 | 3 | 1 | 178 | 1 | 192 | 1.4e-71 | 270.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062255.t1 | G7I486 | 97.8 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 1.9e-93 | 351.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene062255.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04917 | MS.gene062255 | 0.802397 | 5.72E-49 | -1.69E-46 |
MS.gene049887 | MS.gene062255 | 0.821373 | 4.18E-53 | -1.69E-46 |
MS.gene050629 | MS.gene062255 | -0.813679 | 2.27E-51 | -1.69E-46 |
MS.gene050838 | MS.gene062255 | 0.826603 | 2.48E-54 | -1.69E-46 |
MS.gene051852 | MS.gene062255 | 0.805028 | 1.63E-49 | -1.69E-46 |
MS.gene053677 | MS.gene062255 | 0.818675 | 1.73E-52 | -1.69E-46 |
MS.gene056522 | MS.gene062255 | -0.804801 | 1.81E-49 | -1.69E-46 |
MS.gene058758 | MS.gene062255 | 0.804322 | 2.28E-49 | -1.69E-46 |
MS.gene058852 | MS.gene062255 | 0.810953 | 8.92E-51 | -1.69E-46 |
MS.gene059170 | MS.gene062255 | 0.801198 | 1.01E-48 | -1.69E-46 |
MS.gene059171 | MS.gene062255 | 0.846042 | 2.78E-59 | -1.69E-46 |
MS.gene060869 | MS.gene062255 | 0.818364 | 2.04E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062255.t1 | MTR_1g076270 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 3.58e-128 | 357 |
MS.gene062255.t1 | MTR_1g093350 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 3.58e-128 | 357 |
MS.gene062255.t1 | MTR_1g040675 | 74.176 | 182 | 33 | 3 | 11 | 178 | 1 | 182 | 7.69e-93 | 268 |
MS.gene062255.t1 | MTR_1g070830 | 59.701 | 201 | 58 | 5 | 1 | 178 | 1 | 201 | 4.78e-80 | 236 |
MS.gene062255.t1 | MTR_1g040675 | 70.988 | 162 | 33 | 3 | 11 | 158 | 1 | 162 | 1.83e-76 | 226 |
MS.gene062255.t1 | MTR_6g488150 | 42.174 | 230 | 73 | 5 | 9 | 178 | 13 | 242 | 7.59e-53 | 169 |
MS.gene062255.t1 | MTR_1g093240 | 45.622 | 217 | 69 | 6 | 11 | 178 | 8 | 224 | 9.76e-52 | 166 |
MS.gene062255.t1 | MTR_1g093240 | 45.622 | 217 | 69 | 6 | 11 | 178 | 8 | 224 | 1.63e-51 | 165 |
MS.gene062255.t1 | MTR_1g080860 | 42.291 | 227 | 72 | 6 | 11 | 178 | 15 | 241 | 1.86e-49 | 160 |
MS.gene062255.t1 | MTR_1g080860 | 42.291 | 227 | 72 | 6 | 11 | 178 | 15 | 241 | 2.09e-49 | 160 |
MS.gene062255.t1 | MTR_7g096090 | 49.153 | 177 | 63 | 5 | 28 | 178 | 63 | 238 | 3.51e-48 | 157 |
MS.gene062255.t1 | MTR_5g030710 | 45.304 | 181 | 68 | 4 | 29 | 178 | 143 | 323 | 1.36e-47 | 158 |
MS.gene062255.t1 | MTR_1g070520 | 41.892 | 222 | 64 | 6 | 16 | 178 | 18 | 233 | 1.99e-47 | 155 |
MS.gene062255.t1 | MTR_5g067350 | 47.126 | 174 | 62 | 5 | 30 | 178 | 167 | 335 | 1.57e-45 | 153 |
MS.gene062255.t1 | MTR_8g067530 | 47.159 | 176 | 64 | 5 | 29 | 178 | 172 | 344 | 1.95e-45 | 153 |
MS.gene062255.t1 | MTR_2g101500 | 53.020 | 149 | 43 | 4 | 57 | 178 | 166 | 314 | 2.35e-45 | 152 |
MS.gene062255.t1 | MTR_8g103030 | 47.802 | 182 | 66 | 6 | 26 | 178 | 100 | 281 | 3.82e-44 | 148 |
MS.gene062255.t1 | MTR_4g011880 | 46.746 | 169 | 81 | 4 | 11 | 178 | 6 | 166 | 3.52e-41 | 137 |
MS.gene062255.t1 | MTR_1g093240 | 42.132 | 197 | 65 | 6 | 11 | 158 | 8 | 204 | 5.39e-39 | 132 |
MS.gene062255.t1 | MTR_2g102490 | 44.767 | 172 | 74 | 6 | 13 | 170 | 16 | 180 | 5.44e-32 | 114 |
MS.gene062255.t1 | MTR_6g488150 | 37.576 | 165 | 57 | 4 | 9 | 127 | 13 | 177 | 4.02e-28 | 103 |
MS.gene062255.t1 | MTR_1g069495 | 33.333 | 177 | 57 | 4 | 62 | 178 | 81 | 256 | 3.34e-26 | 100 |
MS.gene062255.t1 | MTR_8g014520 | 36.420 | 162 | 57 | 5 | 55 | 174 | 103 | 260 | 4.14e-25 | 98.2 |
MS.gene062255.t1 | MTR_8g014520 | 36.420 | 162 | 57 | 5 | 55 | 174 | 103 | 260 | 4.70e-25 | 98.2 |
MS.gene062255.t1 | MTR_4g124300 | 37.984 | 129 | 77 | 2 | 48 | 175 | 58 | 184 | 4.99e-25 | 95.9 |
MS.gene062255.t1 | MTR_2g100780 | 33.721 | 172 | 65 | 4 | 50 | 174 | 85 | 254 | 1.64e-24 | 96.7 |
MS.gene062255.t1 | MTR_2g100780 | 33.721 | 172 | 65 | 4 | 50 | 174 | 85 | 254 | 2.25e-24 | 96.3 |
MS.gene062255.t1 | MTR_5g067350 | 44.037 | 109 | 44 | 3 | 30 | 125 | 167 | 271 | 2.01e-21 | 88.6 |
MS.gene062255.t1 | MTR_1g085750 | 43.820 | 89 | 49 | 1 | 84 | 171 | 82 | 170 | 1.91e-19 | 81.3 |
MS.gene062255.t1 | MTR_7g110790 | 40.426 | 94 | 55 | 1 | 79 | 171 | 62 | 155 | 1.25e-18 | 78.6 |
MS.gene062255.t1 | MTR_3g106850 | 31.538 | 130 | 69 | 3 | 64 | 178 | 89 | 213 | 1.72e-18 | 79.3 |
MS.gene062255.t1 | MTR_4g115075 | 30.579 | 121 | 63 | 3 | 64 | 171 | 93 | 205 | 2.84e-16 | 73.6 |
MS.gene062255.t1 | MTR_1g085750 | 42.105 | 76 | 43 | 1 | 84 | 158 | 82 | 157 | 2.09e-13 | 64.7 |
MS.gene062255.t1 | MTR_1g109510 | 37.607 | 117 | 62 | 4 | 64 | 171 | 54 | 168 | 2.94e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062255.t1 | AT5G43700 | 62.295 | 183 | 62 | 3 | 1 | 178 | 1 | 181 | 7.06e-77 | 228 |
MS.gene062255.t1 | AT1G04240 | 60.773 | 181 | 58 | 4 | 11 | 178 | 5 | 185 | 1.13e-76 | 227 |
MS.gene062255.t1 | AT1G04240 | 60.773 | 181 | 58 | 4 | 11 | 178 | 105 | 285 | 8.12e-76 | 229 |
MS.gene062255.t1 | AT3G23030 | 60.112 | 178 | 53 | 4 | 5 | 175 | 1 | 167 | 2.54e-69 | 208 |
MS.gene062255.t1 | AT3G23030 | 59.777 | 179 | 54 | 4 | 4 | 175 | 87 | 254 | 8.12e-69 | 210 |
MS.gene062255.t1 | AT4G14560 | 60.479 | 167 | 59 | 3 | 9 | 175 | 5 | 164 | 3.72e-65 | 197 |
MS.gene062255.t1 | AT3G04730 | 45.089 | 224 | 66 | 6 | 11 | 178 | 2 | 224 | 1.20e-53 | 171 |
MS.gene062255.t1 | AT4G14550 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 8.74e-53 | 168 |
MS.gene062255.t1 | AT4G14550 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 1.29e-52 | 167 |
MS.gene062255.t1 | AT1G04250 | 43.721 | 215 | 72 | 5 | 10 | 178 | 6 | 217 | 1.67e-51 | 165 |
MS.gene062255.t1 | AT3G23050 | 44.889 | 225 | 67 | 8 | 11 | 178 | 6 | 230 | 1.83e-51 | 165 |
MS.gene062255.t1 | AT4G29080 | 42.248 | 258 | 61 | 8 | 9 | 178 | 36 | 293 | 1.38e-50 | 165 |
MS.gene062255.t1 | AT3G15540 | 45.989 | 187 | 76 | 5 | 11 | 177 | 6 | 187 | 4.93e-45 | 147 |
MS.gene062255.t1 | AT1G15580 | 49.419 | 172 | 70 | 6 | 9 | 177 | 6 | 163 | 3.07e-44 | 144 |
MS.gene062255.t1 | AT1G52830 | 45.556 | 180 | 83 | 5 | 11 | 177 | 6 | 183 | 1.29e-42 | 141 |
MS.gene062255.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.50e-42 | 144 |
MS.gene062255.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.50e-42 | 144 |
MS.gene062255.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.70e-42 | 144 |
MS.gene062255.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.70e-42 | 144 |
MS.gene062255.t1 | AT2G22670 | 47.468 | 158 | 56 | 4 | 48 | 178 | 167 | 324 | 3.00e-42 | 144 |
MS.gene062255.t1 | AT5G65670 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 2.53e-41 | 142 |
MS.gene062255.t1 | AT5G65670 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 3.04e-41 | 141 |
MS.gene062255.t1 | AT4G14550 | 43.590 | 195 | 62 | 8 | 11 | 157 | 1 | 195 | 4.55e-40 | 134 |
MS.gene062255.t1 | AT3G23050 | 41.463 | 205 | 63 | 8 | 11 | 158 | 6 | 210 | 2.31e-38 | 130 |
MS.gene062255.t1 | AT4G28640 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.88e-30 | 111 |
MS.gene062255.t1 | AT4G28640 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 2.29e-30 | 111 |
MS.gene062255.t1 | AT2G33310 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.65e-30 | 111 |
MS.gene062255.t1 | AT2G33310 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.65e-30 | 111 |
MS.gene062255.t1 | AT4G28640 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.31e-29 | 110 |
MS.gene062255.t1 | AT2G33310 | 38.378 | 185 | 64 | 6 | 44 | 178 | 47 | 231 | 1.97e-29 | 108 |
MS.gene062255.t1 | AT1G04550 | 35.754 | 179 | 74 | 4 | 40 | 178 | 46 | 223 | 5.56e-29 | 107 |
MS.gene062255.t1 | AT3G16500 | 31.336 | 217 | 93 | 6 | 14 | 174 | 36 | 252 | 3.89e-27 | 103 |
MS.gene062255.t1 | AT3G16500 | 31.140 | 228 | 97 | 7 | 7 | 174 | 25 | 252 | 4.12e-27 | 103 |
MS.gene062255.t1 | AT5G25890 | 35.057 | 174 | 87 | 6 | 14 | 175 | 5 | 164 | 3.74e-26 | 98.6 |
MS.gene062255.t1 | AT4G14550 | 42.384 | 151 | 51 | 7 | 11 | 125 | 1 | 151 | 7.33e-26 | 98.2 |
MS.gene062255.t1 | AT1G51950 | 33.333 | 213 | 88 | 7 | 14 | 174 | 40 | 250 | 1.61e-25 | 99.4 |
MS.gene062255.t1 | AT3G17600 | 38.710 | 124 | 62 | 3 | 56 | 171 | 37 | 154 | 2.66e-25 | 95.9 |
MS.gene062255.t1 | AT3G23050 | 40.123 | 162 | 52 | 7 | 11 | 127 | 6 | 167 | 8.81e-25 | 94.7 |
MS.gene062255.t1 | AT1G04100 | 38.788 | 165 | 50 | 4 | 65 | 178 | 95 | 259 | 2.96e-24 | 95.9 |
MS.gene062255.t1 | AT2G46990 | 44.186 | 86 | 48 | 0 | 86 | 171 | 85 | 170 | 2.24e-20 | 83.6 |
MS.gene062255.t1 | AT3G62100 | 45.349 | 86 | 47 | 0 | 86 | 171 | 83 | 168 | 2.50e-20 | 83.6 |
MS.gene062255.t1 | AT1G80390 | 40.171 | 117 | 60 | 3 | 12 | 124 | 15 | 125 | 1.75e-18 | 77.4 |
MS.gene062255.t1 | AT2G46990 | 45.205 | 73 | 40 | 0 | 86 | 158 | 85 | 157 | 2.98e-15 | 69.7 |
MS.gene062255.t1 | AT3G62100 | 45.205 | 73 | 40 | 0 | 86 | 158 | 83 | 155 | 9.80e-15 | 68.2 |
MS.gene062255.t1 | AT4G32280 | 34.884 | 86 | 51 | 2 | 86 | 171 | 118 | 198 | 2.97e-13 | 65.5 |
MS.gene062255.t1 | AT4G32280 | 34.884 | 86 | 51 | 2 | 86 | 171 | 160 | 240 | 8.94e-13 | 64.7 |
MS.gene062255.t1 | AT2G01200 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.69e-11 | 60.5 |
MS.gene062255.t1 | AT2G01200 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.69e-11 | 60.5 |
MS.gene062255.t1 | AT1G15050 | 37.778 | 90 | 53 | 2 | 87 | 175 | 62 | 149 | 6.13e-11 | 58.2 |
Find 35 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACAAGAGGCTGAGGCTTC+TGG | 0.222165 | 1.1:+57132417 | MS.gene062255:CDS |
TTCTTCCTGTAAGATCTTAT+TGG | 0.258525 | 1.1:-57132390 | None:intergenic |
AAGATTGATTTGAGGGTCTA+TGG | 0.290855 | 1.1:+57132483 | MS.gene062255:CDS |
TGCACAACTTCTTAAAGCTT+TGG | 0.324497 | 1.1:+57132512 | MS.gene062255:CDS |
TCCTTTGAAGTTTCAGTCAA+TGG | 0.366569 | 1.1:-57132195 | None:intergenic |
TATGTGAAAGTGAGTTTAGA+TGG | 0.375233 | 1.1:+57132444 | MS.gene062255:CDS |
CCTTAGGAAGATTGATTTGA+GGG | 0.380707 | 1.1:+57132476 | MS.gene062255:CDS |
ACTTGCAGGGCTAAGATAGT+AGG | 0.383062 | 1.1:+57132360 | MS.gene062255:intron |
TACAAGAGGCTGAGGCTTCT+GGG | 0.384427 | 1.1:+57132418 | MS.gene062255:CDS |
GAGTTAAGATTAGGACTTCC+AGG | 0.392283 | 1.1:+57132126 | MS.gene062255:CDS |
CCATCTTTATCTTCATATGT+AGG | 0.415484 | 1.1:-57132603 | None:intergenic |
GGCCACCAATAAGATCTTAC+AGG | 0.438714 | 1.1:+57132385 | MS.gene062255:CDS |
GATGGTGATTGGATGTTAGT+TGG | 0.443053 | 1.1:+57132621 | MS.gene062255:CDS |
TAGATGGAGCTCCTTACCTT+AGG | 0.462831 | 1.1:+57132460 | MS.gene062255:CDS |
TTCCTGTAAGATCTTATTGG+TGG | 0.463988 | 1.1:-57132387 | None:intergenic |
ACTGAAACTTCAAAGGATAG+TGG | 0.473190 | 1.1:+57132201 | MS.gene062255:CDS |
ATGAAGATAAAGATGGTGAT+TGG | 0.480229 | 1.1:+57132610 | MS.gene062255:CDS |
AAGGCTACTGAGTTAAGATT+AGG | 0.488179 | 1.1:+57132117 | MS.gene062255:CDS |
ACCTTAGGAAGATTGATTTG+AGG | 0.502641 | 1.1:+57132475 | MS.gene062255:CDS |
AAATCAATCTTCCTAAGGTA+AGG | 0.513222 | 1.1:-57132471 | None:intergenic |
CCCTCAAATCAATCTTCCTA+AGG | 0.515293 | 1.1:-57132476 | None:intergenic |
CTTGCAGGGCTAAGATAGTA+GGG | 0.554533 | 1.1:+57132361 | MS.gene062255:intron |
GAACAGTTTACAAGAGGCTG+AGG | 0.558668 | 1.1:+57132410 | MS.gene062255:CDS |
TGTTAGTTGGAGATGTTCCA+TGG | 0.566837 | 1.1:+57132634 | MS.gene062255:CDS |
CCTACATATGAAGATAAAGA+TGG | 0.572828 | 1.1:+57132603 | MS.gene062255:CDS |
TGAGAATGATCTCAACATGA+AGG | 0.586923 | 1.1:+57132098 | MS.gene062255:CDS |
ACCATTGACTGAAACTTCAA+AGG | 0.590661 | 1.1:+57132194 | MS.gene062255:CDS |
ATTGATTTGAGGGTCTATGG+TGG | 0.593128 | 1.1:+57132486 | MS.gene062255:CDS |
CAGGAAGAACAGTTTACAAG+AGG | 0.599653 | 1.1:+57132404 | MS.gene062255:CDS |
AGTTAAGATTAGGACTTCCA+GGG | 0.616003 | 1.1:+57132127 | MS.gene062255:CDS |
GTTAGTTGGAGATGTTCCAT+GGG | 0.617620 | 1.1:+57132635 | MS.gene062255:CDS |
AGCATGTTCAAGTTAACCAT+AGG | 0.640019 | 1.1:+57132537 | MS.gene062255:CDS |
AAAAGACTAAGAATCATGAA+AGG | 0.648151 | 1.1:+57132789 | MS.gene062255:CDS |
ATGAAAGGAACAGAAGCTAG+AGG | 0.651214 | 1.1:+57132804 | MS.gene062255:CDS |
GCAGGGCTAAGATAGTAGGG+TGG | 0.770265 | 1.1:+57132364 | MS.gene062255:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1.1:57132298-57132317 | None:intergenic | 20.0% |
!!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1.1:57132298-57132317 | MS.gene062255:intron | 20.0% |
!!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1.1:57132297-57132316 | MS.gene062255:intron | 20.0% |
! | AAAAGACTAAGAATCATGAA+AGG | + | chr1.1:57132789-57132808 | MS.gene062255:CDS | 25.0% |
! | GCATATATAGAGAGAAAAAA+AGG | - | chr1.1:57132668-57132687 | None:intergenic | 25.0% |
! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1.1:57132567-57132586 | MS.gene062255:CDS | 25.0% |
!! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1.1:57132255-57132274 | None:intergenic | 25.0% |
!!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1.1:57132346-57132365 | MS.gene062255:intron | 25.0% |
!!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1.1:57132347-57132366 | MS.gene062255:intron | 25.0% |
!!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1.1:57132556-57132575 | None:intergenic | 25.0% |
AAATCAATCTTCCTAAGGTA+AGG | - | chr1.1:57132474-57132493 | None:intergenic | 30.0% | |
ATGAAGATAAAGATGGTGAT+TGG | + | chr1.1:57132610-57132629 | MS.gene062255:CDS | 30.0% | |
CCATCTTTATCTTCATATGT+AGG | - | chr1.1:57132606-57132625 | None:intergenic | 30.0% | |
CCTACATATGAAGATAAAGA+TGG | + | chr1.1:57132603-57132622 | MS.gene062255:CDS | 30.0% | |
TATGTGAAAGTGAGTTTAGA+TGG | + | chr1.1:57132444-57132463 | MS.gene062255:CDS | 30.0% | |
TTCTTCCTGTAAGATCTTAT+TGG | - | chr1.1:57132393-57132412 | None:intergenic | 30.0% | |
! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1.1:57132558-57132577 | MS.gene062255:CDS | 30.0% |
!! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1.1:57132252-57132271 | None:intergenic | 30.0% |
AAAAAAAGGACTTACTCCCA+TGG | - | chr1.1:57132654-57132673 | None:intergenic | 35.0% | |
AAGGCTACTGAGTTAAGATT+AGG | + | chr1.1:57132117-57132136 | MS.gene062255:CDS | 35.0% | |
ACATCATGCAACCCTTTATA+AGG | - | chr1.1:57132312-57132331 | None:intergenic | 35.0% | |
ACTGAAACTTCAAAGGATAG+TGG | + | chr1.1:57132201-57132220 | MS.gene062255:CDS | 35.0% | |
AGTTAAGATTAGGACTTCCA+GGG | + | chr1.1:57132127-57132146 | MS.gene062255:CDS | 35.0% | |
TGAGAATGATCTCAACATGA+AGG | + | chr1.1:57132098-57132117 | MS.gene062255:CDS | 35.0% | |
TGCACAACTTCTTAAAGCTT+TGG | + | chr1.1:57132512-57132531 | MS.gene062255:CDS | 35.0% | |
TTCCTGTAAGATCTTATTGG+TGG | - | chr1.1:57132390-57132409 | None:intergenic | 35.0% | |
! | ACCATTGACTGAAACTTCAA+AGG | + | chr1.1:57132194-57132213 | MS.gene062255:CDS | 35.0% |
! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1.1:57132537-57132556 | MS.gene062255:CDS | 35.0% |
! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1.1:57132187-57132206 | None:intergenic | 35.0% |
!! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1.1:57132483-57132502 | MS.gene062255:CDS | 35.0% |
!! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1.1:57132475-57132494 | MS.gene062255:CDS | 35.0% |
!! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1.1:57132476-57132495 | MS.gene062255:CDS | 35.0% |
!! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1.1:57132198-57132217 | None:intergenic | 35.0% |
ATGAAAGGAACAGAAGCTAG+AGG | + | chr1.1:57132804-57132823 | MS.gene062255:CDS | 40.0% | |
CAGGAAGAACAGTTTACAAG+AGG | + | chr1.1:57132404-57132423 | MS.gene062255:CDS | 40.0% | |
CCCTCAAATCAATCTTCCTA+AGG | - | chr1.1:57132479-57132498 | None:intergenic | 40.0% | |
GAGTTAAGATTAGGACTTCC+AGG | + | chr1.1:57132126-57132145 | MS.gene062255:CDS | 40.0% | |
GATGGTGATTGGATGTTAGT+TGG | + | chr1.1:57132621-57132640 | MS.gene062255:CDS | 40.0% | |
GTTAGTTGGAGATGTTCCAT+GGG | + | chr1.1:57132635-57132654 | MS.gene062255:CDS | 40.0% | |
TGTTAGTTGGAGATGTTCCA+TGG | + | chr1.1:57132634-57132653 | MS.gene062255:CDS | 40.0% | |
! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1.1:57132147-57132166 | None:intergenic | 40.0% |
!! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1.1:57132486-57132505 | MS.gene062255:CDS | 40.0% |
ACTTGCAGGGCTAAGATAGT+AGG | + | chr1.1:57132360-57132379 | MS.gene062255:intron | 45.0% | |
CTTGCAGGGCTAAGATAGTA+GGG | + | chr1.1:57132361-57132380 | MS.gene062255:intron | 45.0% | |
GAACAGTTTACAAGAGGCTG+AGG | + | chr1.1:57132410-57132429 | MS.gene062255:CDS | 45.0% | |
GGCCACCAATAAGATCTTAC+AGG | + | chr1.1:57132385-57132404 | MS.gene062255:CDS | 45.0% | |
TAGATGGAGCTCCTTACCTT+AGG | + | chr1.1:57132460-57132479 | MS.gene062255:CDS | 45.0% | |
TACAAGAGGCTGAGGCTTCT+GGG | + | chr1.1:57132418-57132437 | MS.gene062255:CDS | 50.0% | |
TTACAAGAGGCTGAGGCTTC+TGG | + | chr1.1:57132417-57132436 | MS.gene062255:CDS | 50.0% | |
GCAGGGCTAAGATAGTAGGG+TGG | + | chr1.1:57132364-57132383 | MS.gene062255:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 57132078 | 57132833 | 57132078 | ID=MS.gene062255 |
chr1.1 | mRNA | 57132078 | 57132833 | 57132078 | ID=MS.gene062255.t1;Parent=MS.gene062255 |
chr1.1 | exon | 57132078 | 57132259 | 57132078 | ID=MS.gene062255.t1.exon1;Parent=MS.gene062255.t1 |
chr1.1 | CDS | 57132078 | 57132259 | 57132078 | ID=cds.MS.gene062255.t1;Parent=MS.gene062255.t1 |
chr1.1 | exon | 57132368 | 57132658 | 57132368 | ID=MS.gene062255.t1.exon2;Parent=MS.gene062255.t1 |
chr1.1 | CDS | 57132368 | 57132658 | 57132368 | ID=cds.MS.gene062255.t1;Parent=MS.gene062255.t1 |
chr1.1 | exon | 57132770 | 57132833 | 57132770 | ID=MS.gene062255.t1.exon3;Parent=MS.gene062255.t1 |
chr1.1 | CDS | 57132770 | 57132833 | 57132770 | ID=cds.MS.gene062255.t1;Parent=MS.gene062255.t1 |
Gene Sequence |
Protein sequence |