Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062769.t1 | XP_003589236.1 | 98.6 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 3.00E-236 | 827.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062769.t1 | O48723 | 66.0 | 394 | 131 | 3 | 12 | 405 | 10 | 400 | 3.5e-145 | 516.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062769.t1 | G7I4H1 | 98.6 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 2.1e-236 | 827.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene062769 | 0.825308 | 5.03E-54 | -1.69E-46 |
| MS.gene053826 | MS.gene062769 | 0.816152 | 6.41E-52 | -1.69E-46 |
| MS.gene056310 | MS.gene062769 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene056311 | MS.gene062769 | 0.807677 | 4.50E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene062769 | 0.830374 | 3.04E-55 | -1.69E-46 |
| MS.gene058629 | MS.gene062769 | 0.818574 | 1.83E-52 | -1.69E-46 |
| MS.gene058630 | MS.gene062769 | 0.830086 | 3.58E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062769.t1 | MTR_1g019940 | 98.561 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 0.0 | 852 |
| MS.gene062769.t1 | MTR_1g019940 | 98.321 | 417 | 5 | 1 | 1 | 417 | 1 | 415 | 0.0 | 844 |
| MS.gene062769.t1 | MTR_3g101410 | 78.164 | 403 | 86 | 2 | 5 | 407 | 4 | 404 | 0.0 | 643 |
| MS.gene062769.t1 | MTR_3g101400 | 76.427 | 403 | 93 | 2 | 5 | 407 | 4 | 404 | 0.0 | 633 |
| MS.gene062769.t1 | MTR_1g019940 | 97.987 | 298 | 6 | 0 | 120 | 417 | 1 | 298 | 0.0 | 608 |
| MS.gene062769.t1 | MTR_5g017670 | 57.560 | 377 | 155 | 3 | 19 | 394 | 14 | 386 | 1.32e-158 | 453 |
| MS.gene062769.t1 | MTR_5g017680 | 55.076 | 394 | 170 | 4 | 9 | 400 | 1 | 389 | 1.99e-158 | 452 |
| MS.gene062769.t1 | MTR_8g007040 | 43.237 | 414 | 195 | 13 | 11 | 410 | 22 | 409 | 9.33e-100 | 304 |
| MS.gene062769.t1 | MTR_8g007140 | 46.329 | 395 | 174 | 8 | 10 | 399 | 22 | 383 | 1.52e-94 | 290 |
| MS.gene062769.t1 | MTR_8g007090 | 42.317 | 397 | 200 | 11 | 11 | 399 | 22 | 397 | 5.11e-93 | 286 |
| MS.gene062769.t1 | MTR_8g007095 | 42.065 | 397 | 201 | 11 | 11 | 399 | 22 | 397 | 1.03e-92 | 286 |
| MS.gene062769.t1 | MTR_8g007125 | 42.998 | 407 | 201 | 11 | 11 | 410 | 22 | 404 | 3.75e-88 | 274 |
| MS.gene062769.t1 | MTR_8g007065 | 40.441 | 408 | 212 | 11 | 10 | 409 | 21 | 405 | 5.99e-85 | 266 |
| MS.gene062769.t1 | MTR_1g095165 | 28.501 | 407 | 253 | 14 | 21 | 412 | 75 | 458 | 3.49e-37 | 141 |
| MS.gene062769.t1 | MTR_7g094940 | 28.736 | 261 | 147 | 9 | 23 | 269 | 32 | 267 | 4.81e-25 | 105 |
| MS.gene062769.t1 | MTR_1g072190 | 25.513 | 341 | 217 | 12 | 23 | 358 | 32 | 340 | 6.26e-25 | 105 |
| MS.gene062769.t1 | MTR_2g029510 | 27.190 | 331 | 189 | 12 | 6 | 330 | 54 | 338 | 1.91e-20 | 93.2 |
| MS.gene062769.t1 | MTR_0368s0010 | 26.545 | 275 | 173 | 11 | 144 | 412 | 43 | 294 | 1.30e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062769.t1 | AT2G26560 | 66.329 | 395 | 128 | 4 | 12 | 405 | 10 | 400 | 0.0 | 527 |
| MS.gene062769.t1 | AT4G37070 | 59.591 | 391 | 156 | 2 | 13 | 403 | 11 | 399 | 5.00e-169 | 480 |
| MS.gene062769.t1 | AT4G37050 | 60.804 | 398 | 148 | 2 | 14 | 404 | 28 | 424 | 3.08e-168 | 478 |
| MS.gene062769.t1 | AT4G37060 | 57.468 | 395 | 166 | 2 | 14 | 408 | 12 | 404 | 9.27e-165 | 469 |
| MS.gene062769.t1 | AT4G37070 | 59.200 | 375 | 151 | 2 | 13 | 387 | 11 | 383 | 1.52e-160 | 457 |
| MS.gene062769.t1 | AT4G37070 | 59.200 | 375 | 151 | 2 | 13 | 387 | 11 | 383 | 1.52e-160 | 457 |
| MS.gene062769.t1 | AT4G37060 | 53.286 | 426 | 166 | 3 | 14 | 408 | 12 | 435 | 3.58e-158 | 454 |
| MS.gene062769.t1 | AT4G37070 | 57.600 | 375 | 146 | 3 | 13 | 387 | 11 | 372 | 1.82e-152 | 436 |
| MS.gene062769.t1 | AT5G43590 | 53.077 | 390 | 172 | 4 | 13 | 399 | 6 | 387 | 7.65e-130 | 380 |
| MS.gene062769.t1 | AT5G43590 | 53.077 | 390 | 172 | 4 | 13 | 399 | 73 | 454 | 5.55e-129 | 380 |
| MS.gene062769.t1 | AT3G54950 | 27.569 | 399 | 258 | 11 | 21 | 414 | 98 | 470 | 1.40e-35 | 137 |
| MS.gene062769.t1 | AT4G29800 | 28.256 | 407 | 255 | 14 | 21 | 412 | 121 | 505 | 1.88e-35 | 137 |
| MS.gene062769.t1 | AT4G29800 | 28.186 | 408 | 255 | 14 | 21 | 412 | 121 | 506 | 2.74e-35 | 137 |
| MS.gene062769.t1 | AT2G39220 | 29.639 | 388 | 243 | 15 | 21 | 402 | 108 | 471 | 1.72e-34 | 134 |
| MS.gene062769.t1 | AT3G63200 | 28.707 | 317 | 192 | 10 | 23 | 333 | 32 | 320 | 1.10e-30 | 122 |
Find 86 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCAATGTTCAAGGTAAA+AGG | 0.209370 | 1.4:-3392558 | None:intergenic |
| TTAATAAATTCTCACCAATT+TGG | 0.220880 | 1.4:-3394650 | None:intergenic |
| TGATAATTACCTTCGAATTC+AGG | 0.242193 | 1.4:+3394412 | MS.gene062769:CDS |
| TCCAGAGTCAATTTAGAAAA+TGG | 0.281008 | 1.4:+3394684 | MS.gene062769:CDS |
| TTGAAGAAACTATGCCAAAT+TGG | 0.298509 | 1.4:+3394636 | MS.gene062769:CDS |
| GTAAAAGGGCTTGATATCTT+TGG | 0.318803 | 1.4:-3392543 | None:intergenic |
| GCTTCAGAGATCCCCTTGTT+TGG | 0.326246 | 1.4:+3393308 | MS.gene062769:intron |
| TACTCAATCAAGTGGTGATA+TGG | 0.328294 | 1.4:+3394346 | MS.gene062769:CDS |
| CCATATTCCAGAGGCTTGAT+TGG | 0.331569 | 1.4:-3394191 | None:intergenic |
| CCAATCAAGCCTCTGGAATA+TGG | 0.340675 | 1.4:+3394191 | MS.gene062769:CDS |
| GTAACCATTCTTAGTATTGA+TGG | 0.353477 | 1.4:+3391513 | MS.gene062769:CDS |
| ATTCCTTGAATCTCACCTTC+AGG | 0.368436 | 1.4:+3391575 | MS.gene062769:CDS |
| CCAAATGGGGATTATTAGAT+TGG | 0.382105 | 1.4:+3394285 | MS.gene062769:CDS |
| TGCACAAATGGCAGCCAAAT+GGG | 0.384292 | 1.4:+3394271 | MS.gene062769:CDS |
| TTGGTTTCTCCGGTTGTTAG+TGG | 0.394804 | 1.4:-3394717 | None:intergenic |
| TTTCTTTCCAATCAAGCCTC+TGG | 0.407655 | 1.4:+3394184 | MS.gene062769:CDS |
| CCAATCTAATAATCCCCATT+TGG | 0.412692 | 1.4:-3394285 | None:intergenic |
| TGAGAATTTATTAAAGAAAC+CGG | 0.414005 | 1.4:+3394659 | MS.gene062769:CDS |
| AGCATCTTCATTGGTTTCTC+CGG | 0.415887 | 1.4:-3394727 | None:intergenic |
| GGCTTGATTGGAAAGAAATC+AGG | 0.418966 | 1.4:-3394179 | None:intergenic |
| CTGATCATTTCAATAGGCAC+TGG | 0.431825 | 1.4:+3394221 | MS.gene062769:CDS |
| TCTTGCCTCTACTTGTGTGT+GGG | 0.432968 | 1.4:-3394918 | None:intergenic |
| CCTCTTGAGAGCATCTTCAT+TGG | 0.439200 | 1.4:-3394736 | None:intergenic |
| ATATTAATTACCTATGTTGT+GGG | 0.443069 | 1.4:-3392589 | None:intergenic |
| GCAAAGGTAATGAGATCTCT+TGG | 0.450334 | 1.4:+3392768 | MS.gene062769:CDS |
| CTGCACAAATGGCAGCCAAA+TGG | 0.451475 | 1.4:+3394270 | MS.gene062769:CDS |
| ACAAATAAAGATCAGGAAGC+TGG | 0.460216 | 1.4:+3393399 | MS.gene062769:CDS |
| AGGAATTCAATAATTGCAGC+AGG | 0.463149 | 1.4:-3391558 | None:intergenic |
| GGGCAATGTTCAAGGTAAAA+GGG | 0.470464 | 1.4:-3392557 | None:intergenic |
| TAACCATTCTTAGTATTGAT+GGG | 0.470961 | 1.4:+3391514 | MS.gene062769:CDS |
| GAGGAGTTCAATCTCATTGA+TGG | 0.475388 | 1.4:+3393429 | MS.gene062769:CDS |
| GATCTTTATTTGTGAAGTTG+TGG | 0.478348 | 1.4:-3393389 | None:intergenic |
| ATCTTTATTTGTGAAGTTGT+GGG | 0.480852 | 1.4:-3393388 | None:intergenic |
| GATTACTTTGATGTGATCTC+AGG | 0.483035 | 1.4:+3392449 | MS.gene062769:CDS |
| CTTGGAGGACCCAAATATGA+TGG | 0.485178 | 1.4:+3392786 | MS.gene062769:CDS |
| TATATTAATTACCTATGTTG+TGG | 0.490009 | 1.4:-3392590 | None:intergenic |
| CAAGTTGTTAGAGAGAAACT+TGG | 0.490786 | 1.4:+3392822 | MS.gene062769:CDS |
| TTGTGGGCAGGGAGATAAGT+AGG | 0.496729 | 1.4:-3393372 | None:intergenic |
| TGGTGTTTGCGCAAATAATC+CGG | 0.497493 | 1.4:+3393452 | MS.gene062769:CDS |
| CAAGTAGAGGCAAGAAAGCC+CGG | 0.498544 | 1.4:+3394926 | MS.gene062769:CDS |
| CAATAATTGCAGCAGGGATG+AGG | 0.499347 | 1.4:-3391551 | None:intergenic |
| GGAGAGGTTCACTGCACAAA+TGG | 0.505314 | 1.4:+3394259 | MS.gene062769:CDS |
| TTCTTGCCTCTACTTGTGTG+TGG | 0.506302 | 1.4:-3394919 | None:intergenic |
| CAACTTCACAAATAAAGATC+AGG | 0.508422 | 1.4:+3393392 | MS.gene062769:CDS |
| TCTCTCTAACAACTTGATGA+AGG | 0.508522 | 1.4:-3392815 | None:intergenic |
| TCTAAATTGACTCTGGAGAC+CGG | 0.508962 | 1.4:-3394678 | None:intergenic |
| TTACCAAGTTCCCGTAAGTA+GGG | 0.513854 | 1.4:-3391494 | None:intergenic |
| TGATAAGATGAGAAAATGAT+TGG | 0.523309 | 1.4:-3392912 | None:intergenic |
| ATACCTGAAGGTGAGATTCA+AGG | 0.523660 | 1.4:-3391578 | None:intergenic |
| TTATTTGTGAAGTTGTGGGC+AGG | 0.530863 | 1.4:-3393384 | None:intergenic |
| TAAAGATCAGGAAGCTGGAA+AGG | 0.536218 | 1.4:+3393404 | MS.gene062769:CDS |
| GTTACCAAGTTCCCGTAAGT+AGG | 0.539938 | 1.4:-3391495 | None:intergenic |
| GTGATCTCAGGAACAAGTAC+AGG | 0.541512 | 1.4:+3392461 | MS.gene062769:CDS |
| ATGCAGGATGATACATTGAC+AGG | 0.541552 | 1.4:+3394576 | MS.gene062769:intron |
| TCAGGAAGCTGGAAAGGAAG+AGG | 0.545461 | 1.4:+3393410 | MS.gene062769:CDS |
| TGAATCATGAAACTAGATGC+CGG | 0.546406 | 1.4:-3394945 | None:intergenic |
| TTACATAAAATTTCGATGGA+GGG | 0.558119 | 1.4:+3391438 | None:intergenic |
| GAATCATGAAACTAGATGCC+GGG | 0.560416 | 1.4:-3394944 | None:intergenic |
| TTAGATTGGCTAACACATAG+TGG | 0.560851 | 1.4:+3394299 | MS.gene062769:CDS |
| TGATCATTTCAATAGGCACT+GGG | 0.562419 | 1.4:+3394222 | MS.gene062769:CDS |
| CTTGCCTCTACTTGTGTGTG+GGG | 0.564230 | 1.4:-3394917 | None:intergenic |
| AACCATTCTTAGTATTGATG+GGG | 0.567798 | 1.4:+3391515 | MS.gene062769:CDS |
| CAAAGTCTTGATGTCAAATG+TGG | 0.569923 | 1.4:-3392886 | None:intergenic |
| ATCTGTGTGCAGGAGTTGGA+TGG | 0.573566 | 1.4:+3392407 | MS.gene062769:intron |
| TGGTGCGACATTATTAGCAA+AGG | 0.581516 | 1.4:+3392752 | MS.gene062769:CDS |
| TTCTTCAGTAGACATTGCTA+CGG | 0.581643 | 1.4:+3394605 | MS.gene062769:CDS |
| TATTTGTGAAGTTGTGGGCA+GGG | 0.583862 | 1.4:-3393383 | None:intergenic |
| TTTATCTGGAGCAGCTAACA+TGG | 0.585474 | 1.4:-3392498 | None:intergenic |
| GAAAGTTTAGCATCCAAACA+AGG | 0.590523 | 1.4:-3393321 | None:intergenic |
| TTCAGTAGACATTGCTACGG+AGG | 0.603616 | 1.4:+3394608 | MS.gene062769:CDS |
| CCAATGAAGATGCTCTCAAG+AGG | 0.607291 | 1.4:+3394736 | MS.gene062769:CDS |
| AGTTGGATGGTGAAGATGCA+AGG | 0.613978 | 1.4:+3392420 | MS.gene062769:CDS |
| AAAGTTTAGCATCCAAACAA+GGG | 0.615469 | 1.4:-3393320 | None:intergenic |
| AGATCCCCACACACAAGTAG+AGG | 0.617675 | 1.4:+3394913 | MS.gene062769:CDS |
| GCACAAATGGCAGCCAAATG+GGG | 0.620024 | 1.4:+3394272 | MS.gene062769:CDS |
| AAGGTAATGAGATCTCTTGG+AGG | 0.632690 | 1.4:+3392771 | MS.gene062769:CDS |
| TACCAAGTTCCCGTAAGTAG+GGG | 0.644528 | 1.4:-3391493 | None:intergenic |
| ATCTCAGGAACAAGTACAGG+AGG | 0.646501 | 1.4:+3392464 | MS.gene062769:CDS |
| ACCATTCTTAGTATTGATGG+GGG | 0.646720 | 1.4:+3391516 | MS.gene062769:CDS |
| GGAATTCAATAATTGCAGCA+GGG | 0.658810 | 1.4:-3391557 | None:intergenic |
| GAGTTCAATCTCATTGATGG+TGG | 0.662016 | 1.4:+3393432 | MS.gene062769:CDS |
| AAATGTGGGAACAACAATGT+TGG | 0.662239 | 1.4:-3392871 | None:intergenic |
| ACCAAGTTCCCGTAAGTAGG+GGG | 0.666520 | 1.4:-3391492 | None:intergenic |
| AAGTTTAGCATCCAAACAAG+GGG | 0.668793 | 1.4:-3393319 | None:intergenic |
| AAAGTCTTGATGTCAAATGT+GGG | 0.692840 | 1.4:-3392885 | None:intergenic |
| AGAAAACGACCATATTCCAG+AGG | 0.710413 | 1.4:-3394200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTATATATAA+TGG | + | chr1.4:3392965-3392984 | MS.gene062769:intron | 0.0% |
| !! | ATTATTCAATTAATAATTGA+AGG | + | chr1.4:3394077-3394096 | MS.gene062769:intron | 10.0% |
| !! | CCATAAAAAAAAAAAAAAAA+AGG | - | chr1.4:3394451-3394470 | None:intergenic | 10.0% |
| !! | GACAAAATATATAATTTATT+TGG | - | chr1.4:3393215-3393234 | None:intergenic | 10.0% |
| !! | TTCAAATAATAAAGTAATAT+TGG | - | chr1.4:3392366-3392385 | None:intergenic | 10.0% |
| !! | TTGTTTATTTATATATTAGT+TGG | - | chr1.4:3393574-3393593 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAAAAAGGTAT+AGG | - | chr1.4:3394445-3394464 | None:intergenic | 10.0% |
| !!! | CCTTTTTTTTTTTTTTTTTA+TGG | + | chr1.4:3394448-3394467 | MS.gene062769:intron | 10.0% |
| !!! | TCTAAAAAATAAGTTTTTAT+TGG | + | chr1.4:3392708-3392727 | MS.gene062769:intron | 10.0% |
| !! | TAAATTAATTAGTTGTTGAT+TGG | + | chr1.4:3393496-3393515 | MS.gene062769:intron | 15.0% |
| !!! | TAATTTATGTTTATTTTTCG+TGG | - | chr1.4:3392180-3392199 | None:intergenic | 15.0% |
| !!! | TCATTTTATCTATATGTTTT+AGG | - | chr1.4:3392086-3392105 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTTTTGCATAAA+TGG | + | chr1.4:3391735-3391754 | MS.gene062769:intron | 15.0% |
| !!! | TTTTTTTTTTTTATGGTAGT+AGG | + | chr1.4:3394455-3394474 | MS.gene062769:intron | 15.0% |
| !! | AGATTTAACAGTTTATACAA+CGG | + | chr1.4:3392044-3392063 | MS.gene062769:intron | 20.0% |
| !! | ATATTAATTACCTATGTTGT+GGG | - | chr1.4:3392592-3392611 | None:intergenic | 20.0% |
| !! | ATTGTTGCACAATTATAATT+TGG | - | chr1.4:3394805-3394824 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAAACTATCT+TGG | + | chr1.4:3391905-3391924 | MS.gene062769:intron | 20.0% |
| !! | CATATATATAATATACCTGA+AGG | - | chr1.4:3391593-3391612 | None:intergenic | 20.0% |
| !! | CTTCTATTTGTAATTATTTG+AGG | + | chr1.4:3392645-3392664 | MS.gene062769:intron | 20.0% |
| !! | TAGCAAAAGAAATTTAAAGA+TGG | + | chr1.4:3392198-3392217 | MS.gene062769:intron | 20.0% |
| !! | TATATTAATTACCTATGTTG+TGG | - | chr1.4:3392593-3392612 | None:intergenic | 20.0% |
| !! | TATTCTATTCTAATACATTC+AGG | + | chr1.4:3394848-3394867 | MS.gene062769:intron | 20.0% |
| !! | TCAAAATTTGTATTATGCAA+TGG | + | chr1.4:3393637-3393656 | MS.gene062769:intron | 20.0% |
| !! | TGAGAATTTATTAAAGAAAC+CGG | + | chr1.4:3394659-3394678 | MS.gene062769:CDS | 20.0% |
| !! | TGAGTAAAAACATCAATTAA+GGG | - | chr1.4:3394332-3394351 | None:intergenic | 20.0% |
| !! | TGATGTACAAGATATATTAA+TGG | - | chr1.4:3394509-3394528 | None:intergenic | 20.0% |
| !! | TTAAGATTAATTAGTAGAGA+TGG | + | chr1.4:3394762-3394781 | MS.gene062769:intron | 20.0% |
| !! | TTAATAAATTCTCACCAATT+TGG | - | chr1.4:3394653-3394672 | None:intergenic | 20.0% |
| !! | TTCAAAAATAAAAGACAAAG+TGG | - | chr1.4:3393685-3393704 | None:intergenic | 20.0% |
| !! | TTGAGTAAAAACATCAATTA+AGG | - | chr1.4:3394333-3394352 | None:intergenic | 20.0% |
| !! | TTGTTGCACAATTATAATTT+GGG | - | chr1.4:3394804-3394823 | None:intergenic | 20.0% |
| !!! | ATGTATTTTAAATCCACAAT+TGG | - | chr1.4:3392998-3393017 | None:intergenic | 20.0% |
| !!! | ATTTCAAACAATTTTAGTCT+AGG | - | chr1.4:3393281-3393300 | None:intergenic | 20.0% |
| !!! | CTTTGAAATAAAACTATTGT+TGG | - | chr1.4:3393252-3393271 | None:intergenic | 20.0% |
| !!! | GAAAGTTTTTATATGTAAGT+TGG | + | chr1.4:3391845-3391864 | MS.gene062769:intron | 20.0% |
| !!! | GGTAAAACTTTTTACATTAA+CGG | + | chr1.4:3393923-3393942 | MS.gene062769:intron | 20.0% |
| !!! | TTTGTTATTTTTTATGATCC+AGG | + | chr1.4:3394109-3394128 | MS.gene062769:intron | 20.0% |
| ! | AATTGATTATTTGCACATAC+CGG | - | chr1.4:3393474-3393493 | None:intergenic | 25.0% |
| ! | ACAAAAAATTCCCCTAAAAA+GGG | - | chr1.4:3391986-3392005 | None:intergenic | 25.0% |
| ! | CATACATCCATAATGTAATT+GGG | - | chr1.4:3393735-3393754 | None:intergenic | 25.0% |
| ! | TAACAAAATCAACAAAATGC+AGG | + | chr1.4:3394560-3394579 | MS.gene062769:intron | 25.0% |
| ! | TGAAGAAAGAAACTCAAATA+AGG | + | chr1.4:3394020-3394039 | MS.gene062769:intron | 25.0% |
| ! | TGATAAGATGAGAAAATGAT+TGG | - | chr1.4:3392915-3392934 | None:intergenic | 25.0% |
| ! | TTAAAATTCGAACTCTAAGT+AGG | - | chr1.4:3391647-3391666 | None:intergenic | 25.0% |
| !! | AATCATTTTCTCATCTTATC+AGG | + | chr1.4:3392914-3392933 | MS.gene062769:CDS | 25.0% |
| !! | AGGTATTTTCCATCATATTT+GGG | - | chr1.4:3392798-3392817 | None:intergenic | 25.0% |
| !! | ATCTTTATTTGTGAAGTTGT+GGG | - | chr1.4:3393391-3393410 | None:intergenic | 25.0% |
| !! | TATGTTGTGGGAAAATTTTA+GGG | - | chr1.4:3392580-3392599 | None:intergenic | 25.0% |
| !!! | AAAAAAAAGTGTCCCTTTTT+AGG | + | chr1.4:3391971-3391990 | MS.gene062769:intron | 25.0% |
| !!! | AAAAAAAGTGTCCCTTTTTA+GGG | + | chr1.4:3391972-3391991 | MS.gene062769:intron | 25.0% |
| !!! | AAGGTATTTTCCATCATATT+TGG | - | chr1.4:3392799-3392818 | None:intergenic | 25.0% |
| !!! | ATTGGTTCAATTTTTTGTAG+AGG | + | chr1.4:3392726-3392745 | MS.gene062769:intron | 25.0% |
| !!! | GATGTATGCACTTTTTATTT+TGG | + | chr1.4:3393747-3393766 | MS.gene062769:intron | 25.0% |
| !!! | TAACCATTCTTAGTATTGAT+GGG | + | chr1.4:3391514-3391533 | MS.gene062769:CDS | 25.0% |
| !!! | TGAAAGTACCTTGTATATAT+TGG | + | chr1.4:3391611-3391630 | MS.gene062769:intron | 25.0% |
| !!! | TGAGGAATTCAAGTTTTTTA+TGG | + | chr1.4:3392678-3392697 | MS.gene062769:intron | 25.0% |
| !!! | TTTATTTGGTCTTAAAACTG+TGG | - | chr1.4:3393201-3393220 | None:intergenic | 25.0% |
| AAAGTCTTGATGTCAAATGT+GGG | - | chr1.4:3392888-3392907 | None:intergenic | 30.0% | |
| AAAGTTTAGCATCCAAACAA+GGG | - | chr1.4:3393323-3393342 | None:intergenic | 30.0% | |
| ACTAGATCCCAATTACATTA+TGG | + | chr1.4:3393725-3393744 | MS.gene062769:intron | 30.0% | |
| AGCTGAAACAATTATTGATC+AGG | + | chr1.4:3393154-3393173 | MS.gene062769:intron | 30.0% | |
| AGTTTAGTTAAGAATCGCTT+GGG | + | chr1.4:3393111-3393130 | MS.gene062769:intron | 30.0% | |
| CAAAAATACTTTCACAAGAG+AGG | + | chr1.4:3394875-3394894 | MS.gene062769:CDS | 30.0% | |
| CAACTTCACAAATAAAGATC+AGG | + | chr1.4:3393392-3393411 | MS.gene062769:CDS | 30.0% | |
| GACAAAAAATTCCCCTAAAA+AGG | - | chr1.4:3391987-3392006 | None:intergenic | 30.0% | |
| GCATACATCCATAATGTAAT+TGG | - | chr1.4:3393736-3393755 | None:intergenic | 30.0% | |
| GTATTATGCAATGGCATATA+TGG | + | chr1.4:3393646-3393665 | MS.gene062769:intron | 30.0% | |
| TAGTTTAGTTAAGAATCGCT+TGG | + | chr1.4:3393110-3393129 | MS.gene062769:intron | 30.0% | |
| TCAGACACTAACACTTAATA+GGG | + | chr1.4:3392132-3392151 | MS.gene062769:intron | 30.0% | |
| TCCAGAGTCAATTTAGAAAA+TGG | + | chr1.4:3394684-3394703 | MS.gene062769:CDS | 30.0% | |
| TGATAATTACCTTCGAATTC+AGG | + | chr1.4:3394412-3394431 | MS.gene062769:CDS | 30.0% | |
| TTCAGACACTAACACTTAAT+AGG | + | chr1.4:3392131-3392150 | MS.gene062769:intron | 30.0% | |
| TTGAAGAAACTATGCCAAAT+TGG | + | chr1.4:3394636-3394655 | MS.gene062769:CDS | 30.0% | |
| TTGCACAATTATAATTTGGG+TGG | - | chr1.4:3394801-3394820 | None:intergenic | 30.0% | |
| ! | AATTCAGTCACAGAATTTTG+CGG | + | chr1.4:3392241-3392260 | MS.gene062769:intron | 30.0% |
| ! | AGACAAAGTGGATTTAATCA+TGG | - | chr1.4:3393673-3393692 | None:intergenic | 30.0% |
| ! | ATTTGAGGTGTATATACTTG+AGG | + | chr1.4:3392660-3392679 | MS.gene062769:intron | 30.0% |
| ! | CGTTTTCTGATCATTTCAAT+AGG | + | chr1.4:3394215-3394234 | MS.gene062769:CDS | 30.0% |
| ! | CTAAAATTTTCCCACAACAT+AGG | + | chr1.4:3392579-3392598 | MS.gene062769:CDS | 30.0% |
| ! | CTATGTTGTGGGAAAATTTT+AGG | - | chr1.4:3392581-3392600 | None:intergenic | 30.0% |
| ! | GATCTTTATTTGTGAAGTTG+TGG | - | chr1.4:3393392-3393411 | None:intergenic | 30.0% |
| ! | GTAACCATTCTTAGTATTGA+TGG | + | chr1.4:3391513-3391532 | MS.gene062769:CDS | 30.0% |
| ! | TACCTTGTATATATTGGCTA+TGG | + | chr1.4:3391617-3391636 | MS.gene062769:intron | 30.0% |
| !! | AACCATTCTTAGTATTGATG+GGG | + | chr1.4:3391515-3391534 | MS.gene062769:CDS | 30.0% |
| !! | ACCATTTTCTAAATTGACTC+TGG | - | chr1.4:3394688-3394707 | None:intergenic | 30.0% |
| !! | ACTGTGGTTTTTCTAAAGAT+AGG | - | chr1.4:3393185-3393204 | None:intergenic | 30.0% |
| !! | GATGTTTTTACTCAATCAAG+TGG | + | chr1.4:3394338-3394357 | MS.gene062769:CDS | 30.0% |
| !! | GTAAGTTGGTTCCATAATAA+TGG | + | chr1.4:3391859-3391878 | MS.gene062769:intron | 30.0% |
| !! | TATGTTTATTTTTCGTGGCT+AGG | - | chr1.4:3392175-3392194 | None:intergenic | 30.0% |
| !!! | AAAAAAGTGTCCCTTTTTAG+GGG | + | chr1.4:3391973-3391992 | MS.gene062769:intron | 30.0% |
| !!! | AAATTTTAGGGCAATGTTCA+AGG | - | chr1.4:3392568-3392587 | None:intergenic | 30.0% |
| !!! | AGTGGACGATTATTTTTATC+TGG | - | chr1.4:3392515-3392534 | None:intergenic | 30.0% |
| !!! | TCAATTTTTTGTAGAGGACT+TGG | + | chr1.4:3392732-3392751 | MS.gene062769:intron | 30.0% |
| AAATGTGGGAACAACAATGT+TGG | - | chr1.4:3392874-3392893 | None:intergenic | 35.0% | |
| AAGTTTAGCATCCAAACAAG+GGG | - | chr1.4:3393322-3393341 | None:intergenic | 35.0% | |
| ACAAATAAAGATCAGGAAGC+TGG | + | chr1.4:3393399-3393418 | MS.gene062769:CDS | 35.0% | |
| AGCCATAGCCAATATATACA+AGG | - | chr1.4:3391622-3391641 | None:intergenic | 35.0% | |
| AGGAATTCAATAATTGCAGC+AGG | - | chr1.4:3391561-3391580 | None:intergenic | 35.0% | |
| ATATCTTTGGCAGCAAAAAG+TGG | - | chr1.4:3392533-3392552 | None:intergenic | 35.0% | |
| CAAAGTCTTGATGTCAAATG+TGG | - | chr1.4:3392889-3392908 | None:intergenic | 35.0% | |
| CAAGTTGTTAGAGAGAAACT+TGG | + | chr1.4:3392822-3392841 | MS.gene062769:CDS | 35.0% | |
| CCAAATGGGGATTATTAGAT+TGG | + | chr1.4:3394285-3394304 | MS.gene062769:CDS | 35.0% | |
| CCAATCTAATAATCCCCATT+TGG | - | chr1.4:3394288-3394307 | None:intergenic | 35.0% | |
| GAAAGTTTAGCATCCAAACA+AGG | - | chr1.4:3393324-3393343 | None:intergenic | 35.0% | |
| GATTACTTTGATGTGATCTC+AGG | + | chr1.4:3392449-3392468 | MS.gene062769:CDS | 35.0% | |
| GGAATTCAATAATTGCAGCA+GGG | - | chr1.4:3391560-3391579 | None:intergenic | 35.0% | |
| GTAAAAGGGCTTGATATCTT+TGG | - | chr1.4:3392546-3392565 | None:intergenic | 35.0% | |
| GTCAAGTTATTGAACTCAAG+TGG | + | chr1.4:3393080-3393099 | MS.gene062769:intron | 35.0% | |
| GTTCCATAATAATGGCAGTA+GGG | + | chr1.4:3391867-3391886 | MS.gene062769:intron | 35.0% | |
| TAATGGAATGTTGCCAATTG+TGG | + | chr1.4:3392982-3393001 | MS.gene062769:intron | 35.0% | |
| TACTCAATCAAGTGGTGATA+TGG | + | chr1.4:3394346-3394365 | MS.gene062769:CDS | 35.0% | |
| TCTCTCTAACAACTTGATGA+AGG | - | chr1.4:3392818-3392837 | None:intergenic | 35.0% | |
| TGATCATTTCAATAGGCACT+GGG | + | chr1.4:3394222-3394241 | MS.gene062769:CDS | 35.0% | |
| TGGCTAGGTTTATTAGTAGT+TGG | - | chr1.4:3392160-3392179 | None:intergenic | 35.0% | |
| TTATGCAAACTATCTTGGTG+AGG | + | chr1.4:3391910-3391929 | MS.gene062769:intron | 35.0% | |
| TTCTTCAGTAGACATTGCTA+CGG | + | chr1.4:3394605-3394624 | MS.gene062769:CDS | 35.0% | |
| ! | GGAATTTTACCTGAATTCGA+AGG | - | chr1.4:3394424-3394443 | None:intergenic | 35.0% |
| ! | TAGTGCAGCTACTTTATGAA+AGG | + | chr1.4:3391934-3391953 | MS.gene062769:intron | 35.0% |
| ! | TTAGATTGGCTAACACATAG+TGG | + | chr1.4:3394299-3394318 | MS.gene062769:CDS | 35.0% |
| !! | AATTAAGTTGATCTGTGTGC+AGG | + | chr1.4:3392397-3392416 | MS.gene062769:intron | 35.0% |
| !! | ACCATTCTTAGTATTGATGG+GGG | + | chr1.4:3391516-3391535 | MS.gene062769:CDS | 35.0% |
| AAGGTAATGAGATCTCTTGG+AGG | + | chr1.4:3392771-3392790 | MS.gene062769:CDS | 40.0% | |
| AGAAAACGACCATATTCCAG+AGG | - | chr1.4:3394203-3394222 | None:intergenic | 40.0% | |
| AGGGCAATGTTCAAGGTAAA+AGG | - | chr1.4:3392561-3392580 | None:intergenic | 40.0% | |
| ATACCTGAAGGTGAGATTCA+AGG | - | chr1.4:3391581-3391600 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+AGG | + | chr1.4:3394576-3394595 | MS.gene062769:intron | 40.0% | |
| ATGGTAGTAGGAGTCGAATT+CGG | + | chr1.4:3394467-3394486 | MS.gene062769:intron | 40.0% | |
| ATTCCTTGAATCTCACCTTC+AGG | + | chr1.4:3391575-3391594 | MS.gene062769:CDS | 40.0% | |
| CATCCCTACTGCCATTATTA+TGG | - | chr1.4:3391873-3391892 | None:intergenic | 40.0% | |
| CATTCATTGCAACTAAAGCC+TGG | - | chr1.4:3394130-3394149 | None:intergenic | 40.0% | |
| CTGATCATTTCAATAGGCAC+TGG | + | chr1.4:3394221-3394240 | MS.gene062769:CDS | 40.0% | |
| GAGGAGTTCAATCTCATTGA+TGG | + | chr1.4:3393429-3393448 | MS.gene062769:CDS | 40.0% | |
| GAGTTCAATCTCATTGATGG+TGG | + | chr1.4:3393432-3393451 | MS.gene062769:CDS | 40.0% | |
| GCAAAGGTAATGAGATCTCT+TGG | + | chr1.4:3392768-3392787 | MS.gene062769:CDS | 40.0% | |
| GGCTTGATTGGAAAGAAATC+AGG | - | chr1.4:3394182-3394201 | None:intergenic | 40.0% | |
| GGGCAATGTTCAAGGTAAAA+GGG | - | chr1.4:3392560-3392579 | None:intergenic | 40.0% | |
| GGTTCCATAATAATGGCAGT+AGG | + | chr1.4:3391866-3391885 | MS.gene062769:intron | 40.0% | |
| TAAAGATCAGGAAGCTGGAA+AGG | + | chr1.4:3393404-3393423 | MS.gene062769:CDS | 40.0% | |
| TAGATATAGCGCAAGCTAAG+TGG | - | chr1.4:3394533-3394552 | None:intergenic | 40.0% | |
| TATTTGTGAAGTTGTGGGCA+GGG | - | chr1.4:3393386-3393405 | None:intergenic | 40.0% | |
| TCCCCCATCAATACTAAGAA+TGG | - | chr1.4:3391520-3391539 | None:intergenic | 40.0% | |
| TGGTGCGACATTATTAGCAA+AGG | + | chr1.4:3392752-3392771 | MS.gene062769:CDS | 40.0% | |
| TGGTGTTTGCGCAAATAATC+CGG | + | chr1.4:3393452-3393471 | MS.gene062769:CDS | 40.0% | |
| TTACCAAGTTCCCGTAAGTA+GGG | - | chr1.4:3391497-3391516 | None:intergenic | 40.0% | |
| TTATTTGTGAAGTTGTGGGC+AGG | - | chr1.4:3393387-3393406 | None:intergenic | 40.0% | |
| TTTCTTTCCAATCAAGCCTC+TGG | + | chr1.4:3394184-3394203 | MS.gene062769:CDS | 40.0% | |
| ! | AAGATTGTTGTGCGCTGATA+TGG | + | chr1.4:3393902-3393921 | MS.gene062769:intron | 40.0% |
| ! | CATTTTGAGCCACTAACAAC+CGG | + | chr1.4:3394708-3394727 | MS.gene062769:CDS | 40.0% |
| ! | TCTAAATTGACTCTGGAGAC+CGG | - | chr1.4:3394681-3394700 | None:intergenic | 40.0% |
| ! | TTTATCTGGAGCAGCTAACA+TGG | - | chr1.4:3392501-3392520 | None:intergenic | 40.0% |
| !! | AGCATCTTCATTGGTTTCTC+CGG | - | chr1.4:3394730-3394749 | None:intergenic | 40.0% |
| !! | ATTCTTAGTATTGATGGGGG+AGG | + | chr1.4:3391519-3391538 | MS.gene062769:CDS | 40.0% |
| !! | TATTGATGGGGGAGGTATTA+GGG | + | chr1.4:3391527-3391546 | MS.gene062769:CDS | 40.0% |
| AAATTCAGCCCCCTACTTAC+GGG | + | chr1.4:3391484-3391503 | MS.gene062769:CDS | 45.0% | |
| AGTCGAATTCGGTACATCAG+AGG | + | chr1.4:3394478-3394497 | MS.gene062769:intron | 45.0% | |
| AGTTGGATGGTGAAGATGCA+AGG | + | chr1.4:3392420-3392439 | MS.gene062769:CDS | 45.0% | |
| ATCTCAGGAACAAGTACAGG+AGG | + | chr1.4:3392464-3392483 | MS.gene062769:CDS | 45.0% | |
| CAAATTCAGCCCCCTACTTA+CGG | + | chr1.4:3391483-3391502 | MS.gene062769:CDS | 45.0% | |
| CAATAATTGCAGCAGGGATG+AGG | - | chr1.4:3391554-3391573 | None:intergenic | 45.0% | |
| CACTGGGACTGCAAAAAATG+AGG | + | chr1.4:3394238-3394257 | MS.gene062769:CDS | 45.0% | |
| CCAATGAAGATGCTCTCAAG+AGG | + | chr1.4:3394736-3394755 | MS.gene062769:CDS | 45.0% | |
| CCATATTCCAGAGGCTTGAT+TGG | - | chr1.4:3394194-3394213 | None:intergenic | 45.0% | |
| CTTGGAGGACCCAAATATGA+TGG | + | chr1.4:3392786-3392805 | MS.gene062769:CDS | 45.0% | |
| GGACTGCAAAAAATGAGGAG+AGG | + | chr1.4:3394243-3394262 | MS.gene062769:CDS | 45.0% | |
| GTGATCTCAGGAACAAGTAC+AGG | + | chr1.4:3392461-3392480 | MS.gene062769:CDS | 45.0% | |
| GTTACCAAGTTCCCGTAAGT+AGG | - | chr1.4:3391498-3391517 | None:intergenic | 45.0% | |
| TACCAAGTTCCCGTAAGTAG+GGG | - | chr1.4:3391496-3391515 | None:intergenic | 45.0% | |
| TCTTGCCTCTACTTGTGTGT+GGG | - | chr1.4:3394921-3394940 | None:intergenic | 45.0% | |
| TGCACAAATGGCAGCCAAAT+GGG | + | chr1.4:3394271-3394290 | MS.gene062769:CDS | 45.0% | |
| TTCAGTAGACATTGCTACGG+AGG | + | chr1.4:3394608-3394627 | MS.gene062769:CDS | 45.0% | |
| TTCTTGCCTCTACTTGTGTG+TGG | - | chr1.4:3394922-3394941 | None:intergenic | 45.0% | |
| TTGGTTTCTCCGGTTGTTAG+TGG | - | chr1.4:3394720-3394739 | None:intergenic | 45.0% | |
| !! | ATTGATGGGGGAGGTATTAG+GGG | + | chr1.4:3391528-3391547 | MS.gene062769:CDS | 45.0% |
| !! | CCAATCAAGCCTCTGGAATA+TGG | + | chr1.4:3394191-3394210 | MS.gene062769:CDS | 45.0% |
| !! | CCTCTTGAGAGCATCTTCAT+TGG | - | chr1.4:3394739-3394758 | None:intergenic | 45.0% |
| !! | GTATTGATGGGGGAGGTATT+AGG | + | chr1.4:3391526-3391545 | MS.gene062769:CDS | 45.0% |
| ACCAAGTTCCCGTAAGTAGG+GGG | - | chr1.4:3391495-3391514 | None:intergenic | 50.0% | |
| AGATCCCCACACACAAGTAG+AGG | + | chr1.4:3394913-3394932 | MS.gene062769:CDS | 50.0% | |
| ATCTGTGTGCAGGAGTTGGA+TGG | + | chr1.4:3392407-3392426 | MS.gene062769:intron | 50.0% | |
| CAAGTAGAGGCAAGAAAGCC+CGG | + | chr1.4:3394926-3394945 | MS.gene062769:CDS | 50.0% | |
| CTGCACAAATGGCAGCCAAA+TGG | + | chr1.4:3394270-3394289 | MS.gene062769:CDS | 50.0% | |
| CTTGCCTCTACTTGTGTGTG+GGG | - | chr1.4:3394920-3394939 | None:intergenic | 50.0% | |
| GCACAAATGGCAGCCAAATG+GGG | + | chr1.4:3394272-3394291 | MS.gene062769:CDS | 50.0% | |
| GCTTCAGAGATCCCCTTGTT+TGG | + | chr1.4:3393308-3393327 | MS.gene062769:intron | 50.0% | |
| GGAGAGGTTCACTGCACAAA+TGG | + | chr1.4:3394259-3394278 | MS.gene062769:CDS | 50.0% | |
| GTTGATCTGTGTGCAGGAGT+TGG | + | chr1.4:3392403-3392422 | MS.gene062769:intron | 50.0% | |
| TCAGGAAGCTGGAAAGGAAG+AGG | + | chr1.4:3393410-3393429 | MS.gene062769:CDS | 50.0% | |
| TTGTGGGCAGGGAGATAAGT+AGG | - | chr1.4:3393375-3393394 | None:intergenic | 50.0% | |
| GCCCCCTACTTACGGGAACT+TGG | + | chr1.4:3391491-3391510 | MS.gene062769:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 3391453 | 3394963 | 3391453 | ID=MS.gene062769 |
| chr1.4 | mRNA | 3391453 | 3394963 | 3391453 | ID=MS.gene062769.t1;Parent=MS.gene062769 |
| chr1.4 | exon | 3391453 | 3391596 | 3391453 | ID=MS.gene062769.t1.exon1;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3391453 | 3391596 | 3391453 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| chr1.4 | exon | 3392419 | 3392600 | 3392419 | ID=MS.gene062769.t1.exon2;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3392419 | 3392600 | 3392419 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| chr1.4 | exon | 3392746 | 3392935 | 3392746 | ID=MS.gene062769.t1.exon3;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3392746 | 3392935 | 3392746 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| chr1.4 | exon | 3393309 | 3393473 | 3393309 | ID=MS.gene062769.t1.exon4;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3393309 | 3393473 | 3393309 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| chr1.4 | exon | 3394131 | 3394433 | 3394131 | ID=MS.gene062769.t1.exon5;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3394131 | 3394433 | 3394131 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| chr1.4 | exon | 3394582 | 3394757 | 3394582 | ID=MS.gene062769.t1.exon6;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3394582 | 3394757 | 3394582 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| chr1.4 | exon | 3394870 | 3394963 | 3394870 | ID=MS.gene062769.t1.exon7;Parent=MS.gene062769.t1 |
| chr1.4 | CDS | 3394870 | 3394963 | 3394870 | ID=cds.MS.gene062769.t1;Parent=MS.gene062769.t1 |
| Gene Sequence |
| Protein sequence |
