Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063689.t1 | AFK41851.1 | 97.7 | 221 | 5 | 0 | 1 | 221 | 83 | 303 | 2.10E-111 | 411.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063689.t1 | Q9FL08 | 45.1 | 215 | 115 | 1 | 10 | 221 | 104 | 318 | 7.1e-44 | 178.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063689.t1 | G7K2R8 | 97.7 | 221 | 5 | 0 | 1 | 221 | 83 | 303 | 1.5e-111 | 411.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051648 | MS.gene063689 | 0.816244 | 6.11E-52 | -1.69E-46 |
MS.gene052707 | MS.gene063689 | 0.834268 | 3.31E-56 | -1.69E-46 |
MS.gene053958 | MS.gene063689 | 0.810766 | 9.79E-51 | -1.69E-46 |
MS.gene055251 | MS.gene063689 | 0.843374 | 1.46E-58 | -1.69E-46 |
MS.gene058015 | MS.gene063689 | 0.828165 | 1.05E-54 | -1.69E-46 |
MS.gene060076 | MS.gene063689 | 0.815496 | 8.97E-52 | -1.69E-46 |
MS.gene061044 | MS.gene063689 | 0.804957 | 1.68E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 52 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAGGGAAATTCAAAAGTT+TGG | 0.240714 | 5.2:+25318247 | MS.gene063689:CDS |
ATATACAGACTTGGATTATA+AGG | 0.260123 | 5.2:+25318145 | MS.gene063689:intron |
GCCTTTCAAAATATAGATAT+TGG | 0.282976 | 5.2:+25317801 | MS.gene063689:CDS |
CTTGTTACCACTAGCTCTTC+AGG | 0.295870 | 5.2:-25318174 | None:intergenic |
AGCAGCCAAGCTAAAATAAT+TGG | 0.302050 | 5.2:+25317711 | MS.gene063689:CDS |
GGCACAGTGGTCTCCATTGC+AGG | 0.326321 | 5.2:+25317732 | MS.gene063689:CDS |
TTAACTGTGACATTATATAA+AGG | 0.353485 | 5.2:+25317759 | MS.gene063689:CDS |
TCATACTTGCTTTAATTTCA+AGG | 0.356799 | 5.2:+25317112 | MS.gene063689:CDS |
GTTAAATCAGATTGGATAGT+TGG | 0.366365 | 5.2:+25317846 | MS.gene063689:CDS |
TTGAACATAGCTACATATAT+TGG | 0.366626 | 5.2:-25319022 | None:intergenic |
TATACAGACTTGGATTATAA+GGG | 0.382696 | 5.2:+25318146 | MS.gene063689:intron |
TTTGGATTCTCAGACCTGAT+AGG | 0.386129 | 5.2:+25318265 | MS.gene063689:CDS |
ACCTTTCAGTTAAATCAGAT+TGG | 0.389374 | 5.2:+25317838 | MS.gene063689:CDS |
CATATATTGGTCCTTTCTTA+CGG | 0.398364 | 5.2:-25319009 | None:intergenic |
AATATAGATATTGGAGGAAG+TGG | 0.416383 | 5.2:+25317810 | MS.gene063689:CDS |
ACAGCTACCAACTCCCTATC+AGG | 0.429577 | 5.2:-25318279 | None:intergenic |
TGAAAGGCGTTACTAATCAA+TGG | 0.433685 | 5.2:-25317786 | None:intergenic |
TTGGGAGACAGTCTTTATCT+TGG | 0.441217 | 5.2:+25319088 | MS.gene063689:CDS |
AGTGCAATGACCATTCCTAA+TGG | 0.441266 | 5.2:-25319046 | None:intergenic |
GTGCAATGACCATTCCTAAT+GGG | 0.462955 | 5.2:-25319045 | None:intergenic |
TAACTGTGACATTATATAAA+GGG | 0.467351 | 5.2:+25317760 | MS.gene063689:CDS |
GTAGCTATGTTCAACCCATT+AGG | 0.469889 | 5.2:+25319031 | MS.gene063689:CDS |
GCAAGTATGAAGGTAAAAGC+AGG | 0.494725 | 5.2:-25317099 | None:intergenic |
TTGGATTCTCAGACCTGATA+GGG | 0.506332 | 5.2:+25318266 | MS.gene063689:CDS |
TGAAATTAAAGCAAGTATGA+AGG | 0.529601 | 5.2:-25317109 | None:intergenic |
TTAGGAATGGTCATTGCACT+TGG | 0.530569 | 5.2:+25319049 | MS.gene063689:CDS |
GCACAGTGGTCTCCATTGCA+GGG | 0.543263 | 5.2:+25317733 | MS.gene063689:CDS |
GAGACAGTCTTTATCTTGGA+AGG | 0.547932 | 5.2:+25319092 | MS.gene063689:CDS |
CACAGTTAATGCCCCTGCAA+TGG | 0.548584 | 5.2:-25317745 | None:intergenic |
ACATGGGCATTCCGTAAGAA+AGG | 0.551083 | 5.2:+25318998 | MS.gene063689:CDS |
CACAGTGGTCTCCATTGCAG+GGG | 0.557629 | 5.2:+25317734 | MS.gene063689:CDS |
AATGGTCATTGCACTTGGCA+TGG | 0.561423 | 5.2:+25319054 | MS.gene063689:CDS |
TTTCAAAATATAGATATTGG+AGG | 0.562558 | 5.2:+25317804 | MS.gene063689:CDS |
TGAAGGTAAAAGCAGGGAGA+AGG | 0.572430 | 5.2:-25317092 | None:intergenic |
TCCAATCTGATTTAACTGAA+AGG | 0.573414 | 5.2:-25317839 | None:intergenic |
AGCATAGCAGATGCTAGTGT+GGG | 0.575963 | 5.2:-25317066 | None:intergenic |
AAGCATAGCAGATGCTAGTG+TGG | 0.579129 | 5.2:-25317067 | None:intergenic |
ATGGTCATTGCACTTGGCAT+GGG | 0.582373 | 5.2:+25319055 | MS.gene063689:CDS |
GGACAATATACAAAACAGAA+AGG | 0.582580 | 5.2:-25317899 | None:intergenic |
CAAGTATGAAGGTAAAAGCA+GGG | 0.587024 | 5.2:-25317098 | None:intergenic |
TCTCAGACCTGATAGGGAGT+TGG | 0.589811 | 5.2:+25318272 | MS.gene063689:CDS |
TATGTTCAACCCATTAGGAA+TGG | 0.601626 | 5.2:+25319036 | MS.gene063689:CDS |
TGAGGAGTGTTGTATACACA+TGG | 0.602238 | 5.2:+25318981 | MS.gene063689:CDS |
GGATTATCCTGAAGAGCTAG+TGG | 0.609543 | 5.2:+25318167 | MS.gene063689:CDS |
TCATTTATAGGCAATTTGTG+TGG | 0.623525 | 5.2:+25318952 | MS.gene063689:intron |
ATTGTAGCTCTCATTGCAGA+GGG | 0.632720 | 5.2:+25318231 | MS.gene063689:CDS |
AACAAGCATTTGTTGCAGCA+TGG | 0.633651 | 5.2:+25318191 | MS.gene063689:CDS |
AATTGTAGCTCTCATTGCAG+AGG | 0.661606 | 5.2:+25318230 | MS.gene063689:CDS |
CAATTTGTGTGGTATCAATG+AGG | 0.677875 | 5.2:+25318963 | MS.gene063689:CDS |
AGCTAAAATAATTGGCACAG+TGG | 0.680195 | 5.2:+25317719 | MS.gene063689:CDS |
AAGCATTTGTTGCAGCATGG+TGG | 0.684295 | 5.2:+25318194 | MS.gene063689:CDS |
GAGGAGTGTTGTATACACAT+GGG | 0.704060 | 5.2:+25318982 | MS.gene063689:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAACAGAAAAATAATA+TGG | + | chr5.2:25317636-25317655 | MS.gene063689:intron | 10.0% |
!!! | AGAGATTGATATTTTTAAAA+CGG | + | chr5.2:25318060-25318079 | MS.gene063689:intron | 15.0% |
!!! | GATATATTTCAATCATTTTT+TGG | + | chr5.2:25317570-25317589 | MS.gene063689:intron | 15.0% |
!!! | TACAATATTTTTTATACAAG+AGG | - | chr5.2:25318425-25318444 | None:intergenic | 15.0% |
!! | GAATTATAATTTAACCAATG+TGG | + | chr5.2:25318913-25318932 | MS.gene063689:intron | 20.0% |
!! | GATATAACTATATGTAAACA+TGG | + | chr5.2:25317988-25318007 | MS.gene063689:intron | 20.0% |
!! | GTAAAAAATTTAATGTCACT+CGG | + | chr5.2:25317258-25317277 | MS.gene063689:intron | 20.0% |
!! | TAACTGTGACATTATATAAA+GGG | + | chr5.2:25317760-25317779 | MS.gene063689:CDS | 20.0% |
!! | TTAACTGTGACATTATATAA+AGG | + | chr5.2:25317759-25317778 | MS.gene063689:CDS | 20.0% |
!! | TTTCAAAATATAGATATTGG+AGG | + | chr5.2:25317804-25317823 | MS.gene063689:CDS | 20.0% |
!!! | ATGTCATTAATGGTTTTATA+CGG | + | chr5.2:25318539-25318558 | MS.gene063689:intron | 20.0% |
!!! | ATTTTTCTGTTTTTTTTGCA+AGG | - | chr5.2:25317632-25317651 | None:intergenic | 20.0% |
!!! | CATATTTTACATCAATAACA+TGG | - | chr5.2:25318723-25318742 | None:intergenic | 20.0% |
!!! | TCCAATATCTATATTTTGAA+AGG | - | chr5.2:25317805-25317824 | None:intergenic | 20.0% |
! | AATGACATTGCATAGAAAAA+GGG | - | chr5.2:25318527-25318546 | None:intergenic | 25.0% |
! | ACAAAGATTCCTTTCAAAAA+GGG | - | chr5.2:25317463-25317482 | None:intergenic | 25.0% |
! | ACATGATAAGATATGATTAG+AGG | - | chr5.2:25318566-25318585 | None:intergenic | 25.0% |
! | ATATACAGACTTGGATTATA+AGG | + | chr5.2:25318145-25318164 | MS.gene063689:intron | 25.0% |
! | ATTCTCTAACAAAGATTAAC+AGG | - | chr5.2:25318748-25318767 | None:intergenic | 25.0% |
! | CGTATAATACACAAAATGAT+AGG | + | chr5.2:25318455-25318474 | MS.gene063689:intron | 25.0% |
! | GCCTTTCAAAATATAGATAT+TGG | + | chr5.2:25317801-25317820 | MS.gene063689:CDS | 25.0% |
! | TAATGACATTGCATAGAAAA+AGG | - | chr5.2:25318528-25318547 | None:intergenic | 25.0% |
! | TACAAAGATTCCTTTCAAAA+AGG | - | chr5.2:25317464-25317483 | None:intergenic | 25.0% |
! | TATACAGACTTGGATTATAA+GGG | + | chr5.2:25318146-25318165 | MS.gene063689:intron | 25.0% |
! | TCTACATATATATACAGACT+TGG | + | chr5.2:25318136-25318155 | MS.gene063689:intron | 25.0% |
! | TGAAATTAAAGCAAGTATGA+AGG | - | chr5.2:25317112-25317131 | None:intergenic | 25.0% |
! | TTCGAAAAGATTTATTTACC+TGG | - | chr5.2:25317923-25317942 | None:intergenic | 25.0% |
! | TTGAACATAGCTACATATAT+TGG | - | chr5.2:25319025-25319044 | None:intergenic | 25.0% |
! | TTTCTATGCAATGTCATTAA+TGG | + | chr5.2:25318529-25318548 | MS.gene063689:intron | 25.0% |
!! | AAGATTTTAAATCGTAGTTG+CGG | + | chr5.2:25317955-25317974 | MS.gene063689:intron | 25.0% |
!! | AGCAAAATCATCAATTTTTC+AGG | - | chr5.2:25317433-25317452 | None:intergenic | 25.0% |
!! | GCAAAATCATCAATTTTTCA+GGG | - | chr5.2:25317432-25317451 | None:intergenic | 25.0% |
!! | TCATACTTGCTTTAATTTCA+AGG | + | chr5.2:25317112-25317131 | MS.gene063689:CDS | 25.0% |
!! | TTTGTGGTTGTTTCATTTAT+AGG | + | chr5.2:25318940-25318959 | MS.gene063689:intron | 25.0% |
!! | TTTTTGCAAGGATTAAAGAA+GGG | - | chr5.2:25317620-25317639 | None:intergenic | 25.0% |
!!! | ATGCATCACAACTTTAAAAT+CGG | + | chr5.2:25318883-25318902 | MS.gene063689:intron | 25.0% |
!!! | TTTTTTGCAAGGATTAAAGA+AGG | - | chr5.2:25317621-25317640 | None:intergenic | 25.0% |
AATATAGATATTGGAGGAAG+TGG | + | chr5.2:25317810-25317829 | MS.gene063689:CDS | 30.0% | |
ACCTTTCAGTTAAATCAGAT+TGG | + | chr5.2:25317838-25317857 | MS.gene063689:CDS | 30.0% | |
CAAAGATTCCTTTCAAAAAG+GGG | - | chr5.2:25317462-25317481 | None:intergenic | 30.0% | |
CATATATTGGTCCTTTCTTA+CGG | - | chr5.2:25319012-25319031 | None:intergenic | 30.0% | |
CTAGACCTATATGTGAATAA+AGG | + | chr5.2:25318837-25318856 | MS.gene063689:intron | 30.0% | |
CTTTATTCACATATAGGTCT+AGG | - | chr5.2:25318839-25318858 | None:intergenic | 30.0% | |
GAAAATTGTGTTCAATGTGA+AGG | + | chr5.2:25317289-25317308 | MS.gene063689:intron | 30.0% | |
GGACAATATACAAAACAGAA+AGG | - | chr5.2:25317902-25317921 | None:intergenic | 30.0% | |
GTTAAATCAGATTGGATAGT+TGG | + | chr5.2:25317846-25317865 | MS.gene063689:CDS | 30.0% | |
TAAATTCCCAATTTAGTGCA+AGG | - | chr5.2:25318101-25318120 | None:intergenic | 30.0% | |
TCATTTATAGGCAATTTGTG+TGG | + | chr5.2:25318952-25318971 | MS.gene063689:intron | 30.0% | |
TCCAATCTGATTTAACTGAA+AGG | - | chr5.2:25317842-25317861 | None:intergenic | 30.0% | |
TGATGCCTTTATTCACATAT+AGG | - | chr5.2:25318845-25318864 | None:intergenic | 30.0% | |
TTGTATGCAATGTCATTGAA+AGG | + | chr5.2:25318374-25318393 | MS.gene063689:intron | 30.0% | |
! | CTTTTATACCCCTTTTTGAA+AGG | + | chr5.2:25317451-25317470 | MS.gene063689:intron | 30.0% |
! | TTCTGTTTTGTATATTGTCC+AGG | + | chr5.2:25317902-25317921 | MS.gene063689:CDS | 30.0% |
! | TTTTCCAGTAGAACTACAAA+TGG | - | chr5.2:25317528-25317547 | None:intergenic | 30.0% |
!! | GTGCAGATTTTAACGAATAT+TGG | + | chr5.2:25317027-25317046 | MS.gene063689:CDS | 30.0% |
AAGTCATAGATGTTAGTGGA+AGG | + | chr5.2:25317203-25317222 | MS.gene063689:intron | 35.0% | |
ACCAAATACAATTGCCACAT+CGG | - | chr5.2:25317240-25317259 | None:intergenic | 35.0% | |
AGCAGCCAAGCTAAAATAAT+TGG | + | chr5.2:25317711-25317730 | MS.gene063689:CDS | 35.0% | |
AGCTAAAATAATTGGCACAG+TGG | + | chr5.2:25317719-25317738 | MS.gene063689:CDS | 35.0% | |
CAAGTATGAAGGTAAAAGCA+GGG | - | chr5.2:25317101-25317120 | None:intergenic | 35.0% | |
CAATGTCATTGAAAGGTCAA+TGG | + | chr5.2:25318381-25318400 | MS.gene063689:intron | 35.0% | |
CAATTTGTGTGGTATCAATG+AGG | + | chr5.2:25318963-25318982 | MS.gene063689:CDS | 35.0% | |
CACTTACCTTGCACTAAATT+GGG | + | chr5.2:25318092-25318111 | MS.gene063689:intron | 35.0% | |
CAGAGGGAAATTCAAAAGTT+TGG | + | chr5.2:25318247-25318266 | MS.gene063689:CDS | 35.0% | |
TATGTTCAACCCATTAGGAA+TGG | + | chr5.2:25319036-25319055 | MS.gene063689:CDS | 35.0% | |
TCCACTAACATCTATGACTT+GGG | - | chr5.2:25317203-25317222 | None:intergenic | 35.0% | |
TTCCACTAACATCTATGACT+TGG | - | chr5.2:25317204-25317223 | None:intergenic | 35.0% | |
TTTAAATCGTAGTTGCGGTT+GGG | + | chr5.2:25317960-25317979 | MS.gene063689:intron | 35.0% | |
! | GGCATGGGTGTAATATTTTT+GGG | + | chr5.2:25319070-25319089 | MS.gene063689:CDS | 35.0% |
! | TATGCCATTTGTAGTTCTAC+TGG | + | chr5.2:25317521-25317540 | MS.gene063689:intron | 35.0% |
! | TGGCATGGGTGTAATATTTT+TGG | + | chr5.2:25319069-25319088 | MS.gene063689:CDS | 35.0% |
! | TTGTAAAACCAGCTTTTAGC+AGG | + | chr5.2:25318768-25318787 | MS.gene063689:intron | 35.0% |
! | TTTTAAATCGTAGTTGCGGT+TGG | + | chr5.2:25317959-25317978 | MS.gene063689:intron | 35.0% |
!! | TGAAAGGCGTTACTAATCAA+TGG | - | chr5.2:25317789-25317808 | None:intergenic | 35.0% |
!!! | CTGTGCCAATTATTTTAGCT+TGG | - | chr5.2:25317719-25317738 | None:intergenic | 35.0% |
!!! | TTATTTTAGCTTGGCTGCTA+TGG | - | chr5.2:25317710-25317729 | None:intergenic | 35.0% |
AAGCTCTCACACATAGAGTT+TGG | - | chr5.2:25318489-25318508 | None:intergenic | 40.0% | |
AATTGTAGCTCTCATTGCAG+AGG | + | chr5.2:25318230-25318249 | MS.gene063689:CDS | 40.0% | |
ACCCAAGTCATAGATGTTAG+TGG | + | chr5.2:25317199-25317218 | MS.gene063689:intron | 40.0% | |
AGCTCTCACACATAGAGTTT+GGG | - | chr5.2:25318488-25318507 | None:intergenic | 40.0% | |
AGGTCTAATCATATCCGATG+TGG | + | chr5.2:25317223-25317242 | MS.gene063689:intron | 40.0% | |
AGTGCAATGACCATTCCTAA+TGG | - | chr5.2:25319049-25319068 | None:intergenic | 40.0% | |
ATTGTAGCTCTCATTGCAGA+GGG | + | chr5.2:25318231-25318250 | MS.gene063689:CDS | 40.0% | |
CACACATAGAGTTTGGGAAA+GGG | - | chr5.2:25318482-25318501 | None:intergenic | 40.0% | |
CATTGAAAGGTCAATGGTTC+AGG | + | chr5.2:25318387-25318406 | MS.gene063689:intron | 40.0% | |
GCAAGTATGAAGGTAAAAGC+AGG | - | chr5.2:25317102-25317121 | None:intergenic | 40.0% | |
GCACTTACCTTGCACTAAAT+TGG | + | chr5.2:25318091-25318110 | MS.gene063689:intron | 40.0% | |
GTAGCTATGTTCAACCCATT+AGG | + | chr5.2:25319031-25319050 | MS.gene063689:CDS | 40.0% | |
GTGCAATGACCATTCCTAAT+GGG | - | chr5.2:25319048-25319067 | None:intergenic | 40.0% | |
TAACCAATGTGGAGACTTTG+TGG | + | chr5.2:25318924-25318943 | MS.gene063689:intron | 40.0% | |
TCACACATAGAGTTTGGGAA+AGG | - | chr5.2:25318483-25318502 | None:intergenic | 40.0% | |
TCCGATGTGGCAATTGTATT+TGG | + | chr5.2:25317236-25317255 | MS.gene063689:intron | 40.0% | |
TGAACACAATGTGCACTTTC+AGG | + | chr5.2:25317661-25317680 | MS.gene063689:intron | 40.0% | |
TGCATAGAAAAAGGGCAACA+TGG | - | chr5.2:25318519-25318538 | None:intergenic | 40.0% | |
TTAGGAATGGTCATTGCACT+TGG | + | chr5.2:25319049-25319068 | MS.gene063689:CDS | 40.0% | |
TTGGATTCTCAGACCTGATA+GGG | + | chr5.2:25318266-25318285 | MS.gene063689:CDS | 40.0% | |
TTGGGAGACAGTCTTTATCT+TGG | + | chr5.2:25319088-25319107 | MS.gene063689:CDS | 40.0% | |
TTTGGATTCTCAGACCTGAT+AGG | + | chr5.2:25318265-25318284 | MS.gene063689:CDS | 40.0% | |
! | AACAAGCATTTGTTGCAGCA+TGG | + | chr5.2:25318191-25318210 | MS.gene063689:CDS | 40.0% |
! | TGCAGATTTTTGTGTGAACC+AGG | + | chr5.2:25318015-25318034 | MS.gene063689:intron | 40.0% |
!! | GAGGAGTGTTGTATACACAT+GGG | + | chr5.2:25318982-25319001 | MS.gene063689:CDS | 40.0% |
!! | TGAGGAGTGTTGTATACACA+TGG | + | chr5.2:25318981-25319000 | MS.gene063689:CDS | 40.0% |
AAAGAGCTCCTGCTAAAAGC+TGG | - | chr5.2:25318779-25318798 | None:intergenic | 45.0% | |
AAGCATAGCAGATGCTAGTG+TGG | - | chr5.2:25317070-25317089 | None:intergenic | 45.0% | |
AATGGTCATTGCACTTGGCA+TGG | + | chr5.2:25319054-25319073 | MS.gene063689:CDS | 45.0% | |
ACATGGGCATTCCGTAAGAA+AGG | + | chr5.2:25318998-25319017 | MS.gene063689:CDS | 45.0% | |
AGCATAGCAGATGCTAGTGT+GGG | - | chr5.2:25317069-25317088 | None:intergenic | 45.0% | |
ATGGTCATTGCACTTGGCAT+GGG | + | chr5.2:25319055-25319074 | MS.gene063689:CDS | 45.0% | |
CAACCACAAAGTCTCCACAT+TGG | - | chr5.2:25318930-25318949 | None:intergenic | 45.0% | |
CACAATGTGCACTTTCAGGA+TGG | + | chr5.2:25317665-25317684 | MS.gene063689:intron | 45.0% | |
GGATTATCCTGAAGAGCTAG+TGG | + | chr5.2:25318167-25318186 | MS.gene063689:CDS | 45.0% | |
TGAAGGTAAAAGCAGGGAGA+AGG | - | chr5.2:25317095-25317114 | None:intergenic | 45.0% | |
! | AAGCATTTGTTGCAGCATGG+TGG | + | chr5.2:25318194-25318213 | MS.gene063689:CDS | 45.0% |
! | CTTGTTACCACTAGCTCTTC+AGG | - | chr5.2:25318177-25318196 | None:intergenic | 45.0% |
!! | AATAAATATTATTATGTATA+TGG | + | chr5.2:25317355-25317374 | MS.gene063689:intron | 5.0% |
AAGGTCAATGGTTCAGGTCG+TGG | + | chr5.2:25318393-25318412 | MS.gene063689:intron | 50.0% | |
AATCTCTCTGCAGTTGCACG+TGG | - | chr5.2:25318047-25318066 | None:intergenic | 50.0% | |
ACAGCTACCAACTCCCTATC+AGG | - | chr5.2:25318282-25318301 | None:intergenic | 50.0% | |
CACAGTTAATGCCCCTGCAA+TGG | - | chr5.2:25317748-25317767 | None:intergenic | 50.0% | |
TCTCAGACCTGATAGGGAGT+TGG | + | chr5.2:25318272-25318291 | MS.gene063689:CDS | 50.0% | |
CACAGTGGTCTCCATTGCAG+GGG | + | chr5.2:25317734-25317753 | MS.gene063689:CDS | 55.0% | |
GCACAGTGGTCTCCATTGCA+GGG | + | chr5.2:25317733-25317752 | MS.gene063689:CDS | 55.0% | |
!! | AGTTGCACGTGGTGGATACC+TGG | - | chr5.2:25318036-25318055 | None:intergenic | 55.0% |
CTCTCTGCAGTTGCACGTGG+TGG | - | chr5.2:25318044-25318063 | None:intergenic | 60.0% | |
GGCACAGTGGTCTCCATTGC+AGG | + | chr5.2:25317732-25317751 | MS.gene063689:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 25317020 | 25319113 | 25317020 | ID=MS.gene063689 |
chr5.2 | mRNA | 25317020 | 25319113 | 25317020 | ID=MS.gene063689.t1;Parent=MS.gene063689 |
chr5.2 | exon | 25317020 | 25317133 | 25317020 | ID=MS.gene063689.t1.exon1;Parent=MS.gene063689.t1 |
chr5.2 | CDS | 25317020 | 25317133 | 25317020 | ID=cds.MS.gene063689.t1;Parent=MS.gene063689.t1 |
chr5.2 | exon | 25317683 | 25317923 | 25317683 | ID=MS.gene063689.t1.exon2;Parent=MS.gene063689.t1 |
chr5.2 | CDS | 25317683 | 25317923 | 25317683 | ID=cds.MS.gene063689.t1;Parent=MS.gene063689.t1 |
chr5.2 | exon | 25318153 | 25318311 | 25318153 | ID=MS.gene063689.t1.exon3;Parent=MS.gene063689.t1 |
chr5.2 | CDS | 25318153 | 25318311 | 25318153 | ID=cds.MS.gene063689.t1;Parent=MS.gene063689.t1 |
chr5.2 | exon | 25318962 | 25319113 | 25318962 | ID=MS.gene063689.t1.exon4;Parent=MS.gene063689.t1 |
chr5.2 | CDS | 25318962 | 25319113 | 25318962 | ID=cds.MS.gene063689.t1;Parent=MS.gene063689.t1 |
Gene Sequence |
Protein sequence |