AlfalfaGEDB | MS.gene063859

M. sativa cultivar XinJiangDaYe / MS.gene063859

KEGG: -
GO: -
PFAM: PF14226.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063859.t1	XP_003628028.1	61.8	374	18	3	1	249	1	374	1.30E-114	422.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063859.t1	Q84MB3	51.5	169	80	1	18	186	12	178	8.0e-44	178.7
MS.gene063859.t1	Q84MB3	43.8	48	27	0	202	249	318	365	1.9e-05	51.2

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063859.t1	G7LIE7	61.8	374	18	3	1	249	1	374	9.5e-115	422.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050355	MS.gene063859	0.804862	1.76E-49	-1.69E-46
MS.gene050559	MS.gene063859	0.830527	2.79E-55	-1.69E-46
MS.gene050561	MS.gene063859	0.814428	1.55E-51	-1.69E-46
MS.gene050562	MS.gene063859	0.8096	1.75E-50	-1.69E-46
MS.gene053360	MS.gene063859	0.805541	1.27E-49	-1.69E-46
MS.gene059317	MS.gene063859	0.822846	1.90E-53	-1.69E-46
MS.gene060840	MS.gene063859	0.803044	4.21E-49	-1.69E-46

Showing 1 to 7 of 7 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063859.t1	MTR_8g041600	84.615	208	22	1	1	198	1	208	1.58e-126	361
MS.gene063859.t1	MTR_8g041600	84.615	208	22	1	1	198	1	208	1.70e-125	361
MS.gene063859.t1	MTR_8g041600	98.182	55	1	0	195	249	320	374	2.63e-30	116
MS.gene063859.t1	MTR_8g041620	91.758	182	15	0	1	182	1	182	7.88e-122	352
MS.gene063859.t1	MTR_8g041620	90.909	55	5	0	195	249	320	374	2.19e-27	108
MS.gene063859.t1	MTR_8g009080	49.162	179	89	1	8	186	34	210	2.05e-56	183
MS.gene063859.t1	MTR_2g069210	56.725	171	68	3	14	182	10	176	2.99e-56	184
MS.gene063859.t1	MTR_2g069210	52.941	51	24	0	199	249	317	367	6.04e-11	62.0
MS.gene063859.t1	MTR_8g009080	49.162	179	89	1	8	186	34	210	5.03e-56	182
MS.gene063859.t1	MTR_8g009080	49.162	179	89	1	8	186	34	210	8.64e-56	184

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063859.t1	AT1G06620	50.877	171	82	1	16	186	10	178	6.39e-57	183
MS.gene063859.t1	AT1G06620	51.479	169	80	1	18	186	12	178	7.41e-56	183
MS.gene063859.t1	AT5G59540	43.049	223	115	6	17	234	9	224	9.72e-54	175
MS.gene063859.t1	AT2G30830	52.632	171	76	3	17	186	5	171	3.36e-53	176
MS.gene063859.t1	AT5G59540	43.049	223	115	6	17	234	9	224	6.14e-53	175
MS.gene063859.t1	AT2G25450	51.176	170	80	2	17	186	5	171	8.56e-53	175
MS.gene063859.t1	AT2G30840	42.544	228	115	6	14	234	2	220	3.74e-51	169
MS.gene063859.t1	AT2G30840	42.544	228	115	6	14	234	2	220	1.16e-50	169
MS.gene063859.t1	AT2G30840	42.544	228	115	6	14	234	2	220	1.47e-50	169
MS.gene063859.t1	AT1G04350	41.441	222	116	5	17	234	6	217	2.92e-50	168

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Find 51 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTAGATGGAATACCA+TGG	0.710703	8.1:-62395892	None:intergenic
AAAGGTCCAAAATCTATGAT+TGG	0.446667	8.1:-62395779	None:intergenic
AAAGTATGCAAGTGAAAAGT+GGG	0.473030	8.1:+62395850	MS.gene063859:CDS
AAGTATGCAAGTGAAAAGTG+GGG	0.655152	8.1:+62395851	MS.gene063859:CDS
AATGAAAATCTTTGGGATTT+TGG	0.093236	8.1:-62395699	None:intergenic
ACATTGTTACTACAGTACAA+TGG	0.664033	8.1:+62396333	MS.gene063859:intron
ACCGATGTTTCTTTGTAAAC+AGG	0.364593	8.1:-62397569	None:intergenic
ACGTGAACTTGAATCTGTGT+TGG	0.627272	8.1:-62395807	None:intergenic
ACTAGATCACTTCAGAATTT+AGG	0.338717	8.1:+62397643	MS.gene063859:CDS
AGAAACATCGGTTAAAGGCT+TGG	0.513785	8.1:+62397580	MS.gene063859:CDS

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAAGTTACAAGGAGA+TGG	-	chr8.1:62397003-62397022	None:intergenic	30.0%
AAAGATTCACAATTAGGATC+GGG	-	chr8.1:62397338-62397357	None:intergenic	30.0%
AAAGGTCCAAAATCTATGAT+TGG	-	chr8.1:62395782-62395801	None:intergenic	30.0%
AAAGTATGCAAGTGAAAAGT+GGG	+	chr8.1:62395850-62395869	MS.gene063859:CDS	30.0%
AAGATCAAGCTAATCCAAAT+TGG	+	chr8.1:62397359-62397378	MS.gene063859:intron	30.0%
ACATTGTTACTACAGTACAA+TGG	+	chr8.1:62396333-62396352	MS.gene063859:intron	30.0%
CACATTTGAAGATGAATAAG+TGG	+	chr8.1:62396188-62396207	MS.gene063859:intron	30.0%
CTTCTTGATGAATCAAAAGA+AGG	+	chr8.1:62395647-62395666	MS.gene063859:CDS	30.0%
GAAAGATTCACAATTAGGAT+CGG	-	chr8.1:62397339-62397358	None:intergenic	30.0%
GATACCCTTTATTGTGTTAT+GGG	+	chr8.1:62396058-62396077	MS.gene063859:CDS	30.0%

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	62395575	62397664	62395575	ID=MS.gene063859
chr8.1	mRNA	62395575	62397664	62395575	ID=MS.gene063859.t1;Parent=MS.gene063859
chr8.1	exon	62395575	62396122	62395575	ID=MS.gene063859.t1.exon1;Parent=MS.gene063859.t1
chr8.1	CDS	62395575	62396122	62395575	ID=cds.MS.gene063859.t1;Parent=MS.gene063859.t1
chr8.1	exon	62396348	62396383	62396348	ID=MS.gene063859.t1.exon2;Parent=MS.gene063859.t1
chr8.1	CDS	62396348	62396383	62396348	ID=cds.MS.gene063859.t1;Parent=MS.gene063859.t1
chr8.1	exon	62397499	62397664	62397499	ID=MS.gene063859.t1.exon3;Parent=MS.gene063859.t1
chr8.1	CDS	62397499	62397664	62397499	ID=cds.MS.gene063859.t1;Parent=MS.gene063859.t1

Gene Sequence

>MS.gene063859

ATGGTGAACACAAATCTAGAAGAAATCAAACAAAACCATGAACATGTTTATGATAGACACAAAGAGTTAAAGCTTCTTGATGAATCAAAAGAAGGTGTAAAAGGACTTGTAGATGCTGGTTTGACCAAAATCCCAAAGATTTTCATTCATGATAAGATTCATGAACATAACAACAAACAAACATGTTCAACCAATCTTAGTATTCCAATCATAGATTTTGGACCTTTATTTACCAACACAGATTCAAGTTCACGTTTAGAGATAATTGAGAAAGTAAAGTATGCAAGTGAAAAGTGGGGGTTCTTTCAAGTGGTCAACCATGGTATTCCATCTACTGTTTTGGATGAGATGATTGATGGAGTGATTAGGTTTCATGAACAAGACACTGAAATGAAGAAAGAGTTTTATTCTCGTGATATTACTAAAAGAGCTTATTTCAATACCAATTTTGATTTCTATGTTACTCCTGCTGTTAATTGGAGGGATACCCTTTATTGTGTTATGGGTCCTCAGCCTCTTGATCCTCAGGATCTGCCTACAGTTTGCAGGTATATTTATCATGTACTCTCTTTGATACTTTTTTTTTAATCAAATATGTTAGGGGTTAGAAATTCACATTTGAAGATGAATAAGTGGAGAATCTGAGGTTCGAACCCTAACCCAAACTCACAGGGAGTAAGAAACTTATTTATATGATGTTGTCAAAACTGTCTAGTAATACTTATTTAACTTTACATCTACCTGAATAAATTGTTACTACATTGTTACTACAGTACAATGGTTGGTCTTGTGCTTTTACTCAAAATTAGGTACAAACCTTGCATTTAACTAAAAATATACAAAAATTCAGATTTTGATATAATTAACTTATTTACATGCAGAGATATAACAATTAAGTACTCTGACTATGTAAACAAAGTGGGGATGATTCTGTTTGAATTGCTTTCTGAAGCATTAGGACTCAATTCCAGTTACCTTAAAGACATAGATTGTGCAGAAGGACTTTTCCTAATTTCCCATTATTACCCACCTTGCCCTGAGCCAGAACTCACTTTTGGCACAAGTGCTCATTCTGACAGTAGCTTCCTTACTGTTCTCTTACAAGATCAACTTGGTGGCCTCCAAGTTTTCCACGAAAATCAGTGGGTTGATGTCACACCGATTCCTGGCGCGTTGGTCGTTAACCTGGGTGACATGATGCAGGTAGAAATGCATATCTATCTATCTACTCCCTCCAGTCACATTTATAAGCAAAAATGTACTTTTTAGGTTCATTGAATACATAATTTATTTGGTCTCTATATTGACCAAATACATTAAGCATTGAATGAATCTAAAAAATGCTTTTTTGCTTATAAATGTGACCGGAGGGAGTATCTATCTATCTATCTACTATAAATTATAGAATGATTAAGTGGACACATGCCATCTCCTTGTAACTTCATTTTTCCGTCGATAGCGTCTTTCGAGTACATGTACTTCTACGAAGTTTTACAGCTACTACCTACTAGTCTTTGTCATAAAATAAGCTTTCAACTTGTTTAGAAGCAAACAATAAATTCCTCAAATAGTAACTTATTATGAGATGATGATACAATAGACATTCAAAAACGTGTCTTATAAACAAAACAAATAGAGTAATACTCACTGTTTCCAGCTGCAAAATTTGCTTTCTGTTTTTTCTTGATTTAATGTCTAGTAATCATCAAACTCAAGATTATCCAAGTACACCAAATTTATATTATATTTTGTTATATATTCCCGATCCTAATTGTGAATCTTTCAAGATCAAGCTAATCCAAATTGGCCTTCAATGTCTAAACAATATTTTGCAGCTAATCACCAACGATAAGTTTCTAAGCGTTCAACACAGAGTTCTGGCACCAAAAATTGGTCCAAGAGTTTCAGTAGCATGCTTTTTCAGGCAGCATCTTCCCCCCGAGAATTCAAAACTATATGGACCTATACCTGAGTTGCTCACACCAGAGAATCCTCCTGTTTACAAAGAAACATCGGTTAAAGGCTTGGTCTCACACTACTATGGAAAAGGACTAGATGGTAATTCTGCACTAGATCACTTCAGAATTTAG

Protein sequence

>MS.gene063859.t1

MVNTNLEEIKQNHEHVYDRHKELKLLDESKEGVKGLVDAGLTKIPKIFIHDKIHEHNNKQTCSTNLSIPIIDFGPLFTNTDSSSRLEIIEKVKYASEKWGFFQVVNHGIPSTVLDEMIDGVIRFHEQDTEMKKEFYSRDITKRAYFNTNFDFYVTPAVNWRDTLYCVMGPQPLDPQDLPTVCSTMVGLVLLLKIRQHLPPENSKLYGPIPELLTPENPPVYKETSVKGLVSHYYGKGLDGNSALDHFRI