Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064144.t1 | XP_003609879.2 | 97.4 | 265 | 7 | 0 | 29 | 293 | 59 | 323 | 1.90E-149 | 538.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064144.t1 | Q6MEE7 | 39.0 | 241 | 140 | 4 | 29 | 268 | 18 | 252 | 5.9e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064144.t1 | G7JR09 | 97.4 | 265 | 7 | 0 | 29 | 293 | 58 | 322 | 1.4e-149 | 538.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050747 | MS.gene064144 | 0.812957 | 3.26E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene064144 | 0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene064144 | 0.801591 | 8.37E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene064144 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene056610 | MS.gene064144 | 0.810983 | 8.79E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene064144 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene064144 | 0.805585 | 1.24E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene064144 | 0.806074 | 9.81E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene064144 | 0.809453 | 1.88E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene064144 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene064144 | 0.804495 | 2.10E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene064144 | 0.801928 | 7.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064144.t1 | MTR_4g123970 | 97.358 | 265 | 7 | 0 | 29 | 293 | 58 | 322 | 0.0 | 546 |
| MS.gene064144.t1 | MTR_1g097390 | 29.310 | 232 | 118 | 8 | 36 | 239 | 117 | 330 | 5.03e-16 | 78.2 |
| MS.gene064144.t1 | MTR_2g005830 | 28.070 | 171 | 98 | 5 | 29 | 181 | 58 | 221 | 4.19e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064144.t1 | AT3G06950 | 71.161 | 267 | 74 | 2 | 29 | 293 | 57 | 322 | 3.68e-139 | 395 |
| MS.gene064144.t1 | AT1G34150 | 30.736 | 231 | 116 | 8 | 36 | 240 | 114 | 326 | 5.98e-16 | 78.2 |
Find 61 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTCCACATATTT+TGG | 0.121197 | 8.4:-10903306 | MS.gene064144:CDS |
| TATTGAGTTTATACATATTA+TGG | 0.228707 | 8.4:+10903793 | None:intergenic |
| ACCGTTTAATTACGACAATT+TGG | 0.242990 | 8.4:-10903985 | MS.gene064144:CDS |
| AAAATATGTGGAACAATATT+AGG | 0.254864 | 8.4:+10903308 | None:intergenic |
| ACATATTATGGTAAGCAAAA+TGG | 0.289437 | 8.4:+10903805 | None:intergenic |
| CCGATTTGATGTGAAAGAAA+TGG | 0.378687 | 8.4:-10903661 | MS.gene064144:intron |
| TCCTGCTTGCACCAACCAAC+TGG | 0.392400 | 8.4:+10904142 | None:intergenic |
| TCCAAATTGTCGTAATTAAA+CGG | 0.394286 | 8.4:+10903984 | None:intergenic |
| GATATGATTGCCTGCATAAC+GGG | 0.394519 | 8.4:+10905227 | None:intergenic |
| TGATGCAGGAGTCCATGCTT+GGG | 0.401400 | 8.4:-10904118 | MS.gene064144:CDS |
| GTCGCATTGTTGCTTCAGAT+TGG | 0.418270 | 8.4:-10903347 | MS.gene064144:CDS |
| AAAATATGCTTCACTGGATC+TGG | 0.422038 | 8.4:+10903684 | None:intergenic |
| GAAGATTGAATACCATGTTT+CGG | 0.438346 | 8.4:+10903438 | None:intergenic |
| ATCTGGTACGCGATCATTGT+GGG | 0.445378 | 8.4:+10903701 | None:intergenic |
| AAGCAAAATGGCGCTGGAAC+GGG | 0.448936 | 8.4:+10903817 | None:intergenic |
| GCGTGGAATTCAGCTGATGC+AGG | 0.451298 | 8.4:+10903900 | None:intergenic |
| CCATTTCTTTCACATCAAAT+CGG | 0.454616 | 8.4:+10903661 | None:intergenic |
| CTGATGCAGGAGTCCATGCT+TGG | 0.463793 | 8.4:-10904119 | MS.gene064144:CDS |
| AATCGGAAAATATGCTTCAC+TGG | 0.470992 | 8.4:+10903678 | None:intergenic |
| TCTACGGCGCATTGTACAGT+AGG | 0.472692 | 8.4:+10904207 | None:intergenic |
| AGGAGTCCATGCTTGGGGTC+AGG | 0.479875 | 8.4:-10904112 | MS.gene064144:intron |
| TCCAGTTGGTTGGTGCAAGC+AGG | 0.481534 | 8.4:-10904143 | MS.gene064144:CDS |
| TACGATGGAACCCGTTATGC+AGG | 0.483247 | 8.4:-10905237 | MS.gene064144:CDS |
| CAGCTAGAAGTTGAAGGCTC+GGG | 0.495832 | 8.4:-10903479 | MS.gene064144:CDS |
| TATGGTAAGCAAAATGGCGC+TGG | 0.522963 | 8.4:+10903811 | None:intergenic |
| TTAGAGCAACAAAGCTTCAA+AGG | 0.523117 | 8.4:-10904173 | MS.gene064144:CDS |
| GCAGCTAGAAGTTGAAGGCT+CGG | 0.527801 | 8.4:-10903480 | MS.gene064144:CDS |
| GGGTTCCATCGTAAGACAAA+AGG | 0.528252 | 8.4:+10905247 | None:intergenic |
| AGTCACTTGTTGCCTCCACC+AGG | 0.529491 | 8.4:-10903197 | MS.gene064144:CDS |
| GGTGCAAGCAGGACTGATGC+AGG | 0.533920 | 8.4:-10904132 | MS.gene064144:CDS |
| AGCAACAAAGCTTCAAAGGA+AGG | 0.536541 | 8.4:-10904169 | MS.gene064144:CDS |
| TAAGCAAAATGGCGCTGGAA+CGG | 0.543419 | 8.4:+10903816 | None:intergenic |
| TTTGCAGGGCAACCTGGTGG+AGG | 0.546040 | 8.4:+10903185 | None:intergenic |
| CTACGGCGCATTGTACAGTA+GGG | 0.547422 | 8.4:+10904208 | None:intergenic |
| CATCAGCTGAATTCCACGCT+CGG | 0.550432 | 8.4:-10903896 | MS.gene064144:CDS |
| CCAACCAAGATGGCTATAAG+TGG | 0.555642 | 8.4:-10905275 | None:intergenic |
| TTTGGAGAGTCGTGATCGCA+AGG | 0.562237 | 8.4:-10903288 | MS.gene064144:CDS |
| TCACGACTCTCCAAAATATG+TGG | 0.564125 | 8.4:+10903296 | None:intergenic |
| ATCTGACCTGACCCCAAGCA+TGG | 0.568094 | 8.4:+10904106 | None:intergenic |
| TATGTGGAACAATATTAGGA+GGG | 0.569490 | 8.4:+10903312 | None:intergenic |
| ATATGTGGAACAATATTAGG+AGG | 0.574988 | 8.4:+10903311 | None:intergenic |
| TTCCATCGTAAGACAAAAGG+AGG | 0.577863 | 8.4:+10905250 | None:intergenic |
| AGAGTTCACGCTGCTTTGAA+CGG | 0.578649 | 8.4:-10903960 | MS.gene064144:CDS |
| TGATATGATTGCCTGCATAA+CGG | 0.587644 | 8.4:+10905226 | None:intergenic |
| CGTGGAATTCAGCTGATGCA+GGG | 0.588035 | 8.4:+10903901 | None:intergenic |
| TCTCTAACTCGTATATCAGA+AGG | 0.591774 | 8.4:+10903930 | None:intergenic |
| GATCTGGTACGCGATCATTG+TGG | 0.593882 | 8.4:+10903700 | None:intergenic |
| AGGAAGGATCTCCAGTTGGT+TGG | 0.596611 | 8.4:-10904153 | MS.gene064144:CDS |
| GCGCTGGAACGGGTCCATGA+TGG | 0.598181 | 8.4:+10903827 | None:intergenic |
| TGCTATTATCTGCCACCACA+TGG | 0.601083 | 8.4:-10903251 | MS.gene064144:CDS |
| ATTGTTGCTTCAGATTGGAA+AGG | 0.610327 | 8.4:-10903342 | MS.gene064144:CDS |
| GATTTACAGTGATACCATCA+TGG | 0.611998 | 8.4:-10903841 | MS.gene064144:CDS |
| TCATACCATAAGAAAATGCA+AGG | 0.613094 | 8.4:-10903147 | MS.gene064144:CDS |
| TCAAAGGAAGGATCTCCAGT+TGG | 0.617658 | 8.4:-10904157 | MS.gene064144:CDS |
| GATGCAGGAGTCCATGCTTG+GGG | 0.645475 | 8.4:-10904117 | MS.gene064144:CDS |
| TACGGCGCATTGTACAGTAG+GGG | 0.655013 | 8.4:+10904209 | None:intergenic |
| ATGTGGAACAATATTAGGAG+GGG | 0.656496 | 8.4:+10903313 | None:intergenic |
| GTATAGACAAGTCCGAAACA+TGG | 0.664436 | 8.4:-10903450 | MS.gene064144:intron |
| ACGGCGCATTGTACAGTAGG+GGG | 0.692690 | 8.4:+10904210 | None:intergenic |
| GAAACAAGACAAAGACCATG+TGG | 0.703286 | 8.4:+10903236 | None:intergenic |
| ACAAGACAAAGACCATGTGG+TGG | 0.708267 | 8.4:+10903239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAAATAAGTATAGTAT+AGG | - | chr8.4:10903268-10903287 | MS.gene064144:CDS | 15.0% |
| !! | CCAAATATAAAAATCTAATA+TGG | + | chr8.4:10903416-10903435 | None:intergenic | 15.0% |
| !! | CCTAATATAAAAATCTAATA+CGG | + | chr8.4:10903584-10903603 | None:intergenic | 15.0% |
| !! | TATTGAGTTTATACATATTA+TGG | + | chr8.4:10904612-10904631 | None:intergenic | 15.0% |
| !!! | CAACAATAACTTTTTTAATT+TGG | + | chr8.4:10904994-10905013 | None:intergenic | 15.0% |
| !!! | CCATATTAGATTTTTATATT+TGG | - | chr8.4:10903413-10903432 | MS.gene064144:intron | 15.0% |
| !!! | CGTATTAGATTTTTATATTA+GGG | - | chr8.4:10903582-10903601 | MS.gene064144:intron | 15.0% |
| !! | AAAATATGTGGAACAATATT+AGG | + | chr8.4:10905097-10905116 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATAAACCAAGA+AGG | + | chr8.4:10904847-10904866 | None:intergenic | 20.0% |
| !!! | CCGTATTAGATTTTTATATT+AGG | - | chr8.4:10903581-10903600 | MS.gene064144:intron | 20.0% |
| !!! | TAATATTGTTCCACATATTT+TGG | - | chr8.4:10905096-10905115 | MS.gene064144:intron | 20.0% |
| !!! | TCTAATTAAAGCTTTTTCTA+CGG | + | chr8.4:10904214-10904233 | None:intergenic | 20.0% |
| !!! | TGTTTTTATTCATTAAATGC+TGG | + | chr8.4:10904093-10904112 | None:intergenic | 20.0% |
| ! | AAGTTTCGGATAAAAAAGAT+AGG | + | chr8.4:10903677-10903696 | None:intergenic | 25.0% |
| ! | ACATATTATGGTAAGCAAAA+TGG | + | chr8.4:10904600-10904619 | None:intergenic | 25.0% |
| ! | TAAAAATACCAAATCCAAGT+TGG | - | chr8.4:10903949-10903968 | MS.gene064144:CDS | 25.0% |
| ! | TCCAAATTGTCGTAATTAAA+CGG | + | chr8.4:10904421-10904440 | None:intergenic | 25.0% |
| ! | TTATAACTTATTGTGACTGT+AGG | - | chr8.4:10904378-10904397 | MS.gene064144:intron | 25.0% |
| !! | AAGCTGCAAGATATTTTATT+GGG | - | chr8.4:10904647-10904666 | MS.gene064144:intron | 25.0% |
| !! | ATATATCTGTTTGCATTTTC+AGG | - | chr8.4:10905033-10905052 | MS.gene064144:intron | 25.0% |
| !!! | ACTTGGATTTGGTATTTTTA+AGG | + | chr8.4:10903949-10903968 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCCGAAACTT+AGG | - | chr8.4:10903677-10903696 | MS.gene064144:CDS | 25.0% |
| !!! | TTTTTCTCCATTATTTTGAC+TGG | - | chr8.4:10904136-10904155 | MS.gene064144:CDS | 25.0% |
| AAAATCTAATACGGTATCTG+AGG | + | chr8.4:10903575-10903594 | None:intergenic | 30.0% | |
| ACCGTTTAATTACGACAATT+TGG | - | chr8.4:10904417-10904436 | MS.gene064144:intron | 30.0% | |
| ATAGTATAGGCTCTTAATGT+TGG | - | chr8.4:10903281-10903300 | MS.gene064144:CDS | 30.0% | |
| ATATGTGGAACAATATTAGG+AGG | + | chr8.4:10905094-10905113 | None:intergenic | 30.0% | |
| ATGCAATATGCAAGTAGTAT+TGG | + | chr8.4:10903710-10903729 | None:intergenic | 30.0% | |
| CACTCTTTATGAACTCTTAT+TGG | - | chr8.4:10903479-10903498 | MS.gene064144:CDS | 30.0% | |
| CCATTTCTTTCACATCAAAT+CGG | + | chr8.4:10904744-10904763 | None:intergenic | 30.0% | |
| GAAAACTACACCTTTCTATA+TGG | + | chr8.4:10904071-10904090 | None:intergenic | 30.0% | |
| GAAGATTGAATACCATGTTT+CGG | + | chr8.4:10904967-10904986 | None:intergenic | 30.0% | |
| GCATTTCTCTCAAAGTAAAT+AGG | + | chr8.4:10903808-10903827 | None:intergenic | 30.0% | |
| GGTGCATGTATATAAATAGT+GGG | - | chr8.4:10903534-10903553 | MS.gene064144:intron | 30.0% | |
| TAATAATGTTCACAGCAGTA+CGG | + | chr8.4:10904794-10904813 | None:intergenic | 30.0% | |
| TATGTGGAACAATATTAGGA+GGG | + | chr8.4:10905093-10905112 | None:intergenic | 30.0% | |
| TCATACCATAAGAAAATGCA+AGG | - | chr8.4:10905255-10905274 | MS.gene064144:CDS | 30.0% | |
| TGCAATATGCAAGTAGTATT+GGG | + | chr8.4:10903709-10903728 | None:intergenic | 30.0% | |
| TGGTGCATGTATATAAATAG+TGG | - | chr8.4:10903533-10903552 | MS.gene064144:intron | 30.0% | |
| TTACCATGTTTATACCTTCT+TGG | - | chr8.4:10904830-10904849 | MS.gene064144:intron | 30.0% | |
| TTGGGAAAAAACCTAAGTTT+CGG | + | chr8.4:10903691-10903710 | None:intergenic | 30.0% | |
| ! | AAACCAAGAAGGTATAAACA+TGG | + | chr8.4:10904836-10904855 | None:intergenic | 30.0% |
| ! | GAAGCTGCAAGATATTTTAT+TGG | - | chr8.4:10904646-10904665 | MS.gene064144:intron | 30.0% |
| ! | TACAACCTTGCATTTTCTTA+TGG | + | chr8.4:10905263-10905282 | None:intergenic | 30.0% |
| !! | AAAATGGTGTCACAAACTTA+AGG | + | chr8.4:10903877-10903896 | None:intergenic | 30.0% |
| !! | ATTTTGAGCTTTATCCAACT+TGG | + | chr8.4:10903966-10903985 | None:intergenic | 30.0% |
| !! | GGGATTTGGTATTCTTTTTA+TGG | + | chr8.4:10904032-10904051 | None:intergenic | 30.0% |
| AAAACGACTTGTAAGGTAAG+GGG | - | chr8.4:10903621-10903640 | MS.gene064144:intron | 35.0% | |
| AAAATATGCTTCACTGGATC+TGG | + | chr8.4:10904721-10904740 | None:intergenic | 35.0% | |
| AATCGGAAAATATGCTTCAC+TGG | + | chr8.4:10904727-10904746 | None:intergenic | 35.0% | |
| AATCTCACGTTCAATGCTAT+TGG | - | chr8.4:10903507-10903526 | MS.gene064144:intron | 35.0% | |
| ACAGTCACCAGTCAAAATAA+TGG | + | chr8.4:10904146-10904165 | None:intergenic | 35.0% | |
| ATCTCACGTTCAATGCTATT+GGG | - | chr8.4:10903508-10903527 | MS.gene064144:intron | 35.0% | |
| ATGTGGAACAATATTAGGAG+GGG | + | chr8.4:10905092-10905111 | None:intergenic | 35.0% | |
| CTTTACGAAAACGACTTGTA+AGG | - | chr8.4:10903614-10903633 | MS.gene064144:intron | 35.0% | |
| GAAAACGACTTGTAAGGTAA+GGG | - | chr8.4:10903620-10903639 | MS.gene064144:intron | 35.0% | |
| GACTCTTGATCCATATAGAA+AGG | - | chr8.4:10904058-10904077 | MS.gene064144:intron | 35.0% | |
| GATTTACAGTGATACCATCA+TGG | - | chr8.4:10904561-10904580 | MS.gene064144:intron | 35.0% | |
| TCTCAAACATTGTAACCATG+AGG | - | chr8.4:10903758-10903777 | MS.gene064144:CDS | 35.0% | |
| TCTCTAACTCGTATATCAGA+AGG | + | chr8.4:10904475-10904494 | None:intergenic | 35.0% | |
| TGATATGATTGCCTGCATAA+CGG | + | chr8.4:10903179-10903198 | None:intergenic | 35.0% | |
| TTAGAGCAACAAAGCTTCAA+AGG | - | chr8.4:10904229-10904248 | MS.gene064144:CDS | 35.0% | |
| ! | AGCTTTATCCAACTTGGATT+TGG | + | chr8.4:10903960-10903979 | None:intergenic | 35.0% |
| ! | ATTGTTGCTTCAGATTGGAA+AGG | - | chr8.4:10905060-10905079 | MS.gene064144:intron | 35.0% |
| ! | CCGATTTGATGTGAAAGAAA+TGG | - | chr8.4:10904741-10904760 | MS.gene064144:intron | 35.0% |
| ! | TGAATGAAGTTTTCAGCTTG+AGG | - | chr8.4:10903996-10904015 | MS.gene064144:CDS | 35.0% |
| !! | TTTGTGACACCATTTTTGTG+AGG | - | chr8.4:10903881-10903900 | MS.gene064144:CDS | 35.0% |
| AAAACCGTCTTGTGACTTGA+GGG | - | chr8.4:10903452-10903471 | MS.gene064144:CDS | 40.0% | |
| AAGCTGAAATTGCGCACAAA+AGG | + | chr8.4:10904331-10904350 | None:intergenic | 40.0% | |
| AGCAACAAAGCTTCAAAGGA+AGG | - | chr8.4:10904233-10904252 | MS.gene064144:CDS | 40.0% | |
| ATGGATCAAGAGTCAAAGCA+GGG | + | chr8.4:10904052-10904071 | None:intergenic | 40.0% | |
| CACAAACTTAAGGTTGGACT+TGG | + | chr8.4:10903867-10903886 | None:intergenic | 40.0% | |
| CACGTCAATATCAATGTGCA+GGG | - | chr8.4:10904890-10904909 | MS.gene064144:intron | 40.0% | |
| CAGACAATGCCTCACAAAAA+TGG | + | chr8.4:10903893-10903912 | None:intergenic | 40.0% | |
| CGAAAACGACTTGTAAGGTA+AGG | - | chr8.4:10903619-10903638 | MS.gene064144:intron | 40.0% | |
| GAAACAAGACAAAGACCATG+TGG | + | chr8.4:10905169-10905188 | None:intergenic | 40.0% | |
| GATATGATTGCCTGCATAAC+GGG | + | chr8.4:10903178-10903197 | None:intergenic | 40.0% | |
| GTATAGACAAGTCCGAAACA+TGG | - | chr8.4:10904952-10904971 | MS.gene064144:intron | 40.0% | |
| GTTGGAGATACTCACTTGTA+AGG | - | chr8.4:10903299-10903318 | MS.gene064144:CDS | 40.0% | |
| TATGGATCAAGAGTCAAAGC+AGG | + | chr8.4:10904053-10904072 | None:intergenic | 40.0% | |
| TCACGACTCTCCAAAATATG+TGG | + | chr8.4:10905109-10905128 | None:intergenic | 40.0% | |
| TCACGTCAATATCAATGTGC+AGG | - | chr8.4:10904889-10904908 | MS.gene064144:intron | 40.0% | |
| TGATACGAATCAGAACCTCA+TGG | + | chr8.4:10903776-10903795 | None:intergenic | 40.0% | |
| TGGTATTCGAGCTTACCAAT+CGG | + | chr8.4:10903396-10903415 | None:intergenic | 40.0% | |
| TTCCATCGTAAGACAAAAGG+AGG | + | chr8.4:10903155-10903174 | None:intergenic | 40.0% | |
| ! | AGCTTTCAAGTGGCAAACAT+TGG | - | chr8.4:10904346-10904365 | MS.gene064144:intron | 40.0% |
| ! | CTTTTGCAGCTAGAAGTTGA+AGG | - | chr8.4:10904917-10904936 | MS.gene064144:intron | 40.0% |
| ! | TTTGACTGGTGACTGTTTTC+AGG | - | chr8.4:10904150-10904169 | MS.gene064144:CDS | 40.0% |
| !! | ACTTGGTGCGTGTGTATAAA+CGG | - | chr8.4:10903362-10903381 | MS.gene064144:intron | 40.0% |
| !! | AGTCACAAGACGGTTTTGTA+AGG | + | chr8.4:10903449-10903468 | None:intergenic | 40.0% |
| !! | TCTTATCGGTTCAACACCAT+TGG | - | chr8.4:10903339-10903358 | MS.gene064144:CDS | 40.0% |
| !! | TGGTGTCACAAACTTAAGGT+TGG | + | chr8.4:10903873-10903892 | None:intergenic | 40.0% |
| AAACCGTCTTGTGACTTGAG+GGG | - | chr8.4:10903453-10903472 | MS.gene064144:CDS | 45.0% | |
| ACAAGACAAAGACCATGTGG+TGG | + | chr8.4:10905166-10905185 | None:intergenic | 45.0% | |
| ACGTTCAATGCTATTGGGCT+TGG | - | chr8.4:10903513-10903532 | MS.gene064144:intron | 45.0% | |
| ATCTGGTACGCGATCATTGT+GGG | + | chr8.4:10904704-10904723 | None:intergenic | 45.0% | |
| CAAAACCGTCTTGTGACTTG+AGG | - | chr8.4:10903451-10903470 | MS.gene064144:CDS | 45.0% | |
| CAAGAGTCAAAGCAGGGATT+TGG | + | chr8.4:10904046-10904065 | None:intergenic | 45.0% | |
| GAGAGAGGTCTCACTCTTAT+CGG | - | chr8.4:10903325-10903344 | MS.gene064144:CDS | 45.0% | |
| GCGCAATTTCAGCTTTCAAG+TGG | - | chr8.4:10904336-10904355 | MS.gene064144:intron | 45.0% | |
| GGGTTCCATCGTAAGACAAA+AGG | + | chr8.4:10903158-10903177 | None:intergenic | 45.0% | |
| GGTATTCGAGCTTACCAATC+GGG | + | chr8.4:10903395-10903414 | None:intergenic | 45.0% | |
| TATGGTAAGCAAAATGGCGC+TGG | + | chr8.4:10904594-10904613 | None:intergenic | 45.0% | |
| TCAAAGGAAGGATCTCCAGT+TGG | - | chr8.4:10904245-10904264 | MS.gene064144:intron | 45.0% | |
| TCACTTGTAAGGTGAGAGAG+AGG | - | chr8.4:10903310-10903329 | MS.gene064144:CDS | 45.0% | |
| TGCTATTATCTGCCACCACA+TGG | - | chr8.4:10905151-10905170 | MS.gene064144:intron | 45.0% | |
| ! | AGAGTTCACGCTGCTTTGAA+CGG | - | chr8.4:10904442-10904461 | MS.gene064144:intron | 45.0% |
| ! | GCATGCCAGAACTTTTTGCA+GGG | + | chr8.4:10905234-10905253 | None:intergenic | 45.0% |
| ! | GTCGCATTGTTGCTTCAGAT+TGG | - | chr8.4:10905055-10905074 | MS.gene064144:intron | 45.0% |
| ! | TAAGCAAAATGGCGCTGGAA+CGG | + | chr8.4:10904589-10904608 | None:intergenic | 45.0% |
| ! | TGCATGCCAGAACTTTTTGC+AGG | + | chr8.4:10905235-10905254 | None:intergenic | 45.0% |
| ! | TTTTTGCAGAAAACCGAGCG+TGG | + | chr8.4:10904522-10904541 | None:intergenic | 45.0% |
| !! | CGGTTTTGTAAGGACGAGTT+TGG | + | chr8.4:10903439-10903458 | None:intergenic | 45.0% |
| !! | GTTTTCAGGCTGGCAATATC+AGG | - | chr8.4:10904164-10904183 | MS.gene064144:CDS | 45.0% |
| ACACCCCTCAAGTCACAAGA+CGG | + | chr8.4:10903459-10903478 | None:intergenic | 50.0% | |
| AGGAAGGATCTCCAGTTGGT+TGG | - | chr8.4:10904249-10904268 | MS.gene064144:intron | 50.0% | |
| CAGCTAGAAGTTGAAGGCTC+GGG | - | chr8.4:10904923-10904942 | MS.gene064144:intron | 50.0% | |
| CATCAGCTGAATTCCACGCT+CGG | - | chr8.4:10904506-10904525 | MS.gene064144:intron | 50.0% | |
| CGGTTCAACACCATTGGACT+TGG | - | chr8.4:10903345-10903364 | MS.gene064144:CDS | 50.0% | |
| CGTGGAATTCAGCTGATGCA+GGG | + | chr8.4:10904504-10904523 | None:intergenic | 50.0% | |
| CTACGGCGCATTGTACAGTA+GGG | + | chr8.4:10904197-10904216 | None:intergenic | 50.0% | |
| GATCTGGTACGCGATCATTG+TGG | + | chr8.4:10904705-10904724 | None:intergenic | 50.0% | |
| GCAGCTAGAAGTTGAAGGCT+CGG | - | chr8.4:10904922-10904941 | MS.gene064144:intron | 50.0% | |
| GCGTGTGTATAAACGGTTGG+TGG | - | chr8.4:10903369-10903388 | MS.gene064144:intron | 50.0% | |
| GGTGCGTGTGTATAAACGGT+TGG | - | chr8.4:10903366-10903385 | MS.gene064144:intron | 50.0% | |
| GGTTGCCCTGCAAAAAGTTC+TGG | - | chr8.4:10905226-10905245 | MS.gene064144:CDS | 50.0% | |
| TACACACGCACCAAGTCCAA+TGG | + | chr8.4:10903358-10903377 | None:intergenic | 50.0% | |
| TACGATGGAACCCGTTATGC+AGG | - | chr8.4:10903165-10903184 | MS.gene064144:CDS | 50.0% | |
| TACGGCGCATTGTACAGTAG+GGG | + | chr8.4:10904196-10904215 | None:intergenic | 50.0% | |
| TCTACGGCGCATTGTACAGT+AGG | + | chr8.4:10904198-10904217 | None:intergenic | 50.0% | |
| TGATGCAGGAGTCCATGCTT+GGG | - | chr8.4:10904284-10904303 | MS.gene064144:intron | 50.0% | |
| TTTGGAGAGTCGTGATCGCA+AGG | - | chr8.4:10905114-10905133 | MS.gene064144:intron | 50.0% | |
| ! | AAGCAAAATGGCGCTGGAAC+GGG | + | chr8.4:10904588-10904607 | None:intergenic | 50.0% |
| ! | CGCCTCCTTTTGTCTTACGA+TGG | - | chr8.4:10903150-10903169 | MS.gene064144:CDS | 50.0% |
| ! | CGGTATCTGAGGCTATCGAT+CGG | + | chr8.4:10903564-10903583 | None:intergenic | 50.0% |
| ! | GAACTTTTTGCAGGGCAACC+TGG | + | chr8.4:10905226-10905245 | None:intergenic | 50.0% |
| ! | GGTATCTGAGGCTATCGATC+GGG | + | chr8.4:10903563-10903582 | None:intergenic | 50.0% |
| !! | ACTGGTGACTGTTTTCAGGC+TGG | - | chr8.4:10904154-10904173 | MS.gene064144:CDS | 50.0% |
| ACGGCGCATTGTACAGTAGG+GGG | + | chr8.4:10904195-10904214 | None:intergenic | 55.0% | |
| ATCTGACCTGACCCCAAGCA+TGG | + | chr8.4:10904299-10904318 | None:intergenic | 55.0% | |
| CTGATGCAGGAGTCCATGCT+TGG | - | chr8.4:10904283-10904302 | MS.gene064144:intron | 55.0% | |
| GATGCAGGAGTCCATGCTTG+GGG | - | chr8.4:10904285-10904304 | MS.gene064144:intron | 55.0% | |
| GCGTGGAATTCAGCTGATGC+AGG | + | chr8.4:10904505-10904524 | None:intergenic | 55.0% | |
| TCCTGCTTGCACCAACCAAC+TGG | + | chr8.4:10904263-10904282 | None:intergenic | 55.0% | |
| ! | AGTCACTTGTTGCCTCCACC+AGG | - | chr8.4:10905205-10905224 | MS.gene064144:intron | 55.0% |
| ! | CTTTTTGCAGGGCAACCTGG+TGG | + | chr8.4:10905223-10905242 | None:intergenic | 55.0% |
| ! | TCCAGTTGGTTGGTGCAAGC+AGG | - | chr8.4:10904259-10904278 | MS.gene064144:intron | 55.0% |
| !! | TAAACGGTTGGTGGCCCGAT+TGG | - | chr8.4:10903378-10903397 | MS.gene064144:intron | 55.0% |
| AGGAGTCCATGCTTGGGGTC+AGG | - | chr8.4:10904290-10904309 | MS.gene064144:intron | 60.0% | |
| GGTGCAAGCAGGACTGATGC+AGG | - | chr8.4:10904270-10904289 | MS.gene064144:intron | 60.0% | |
| TTTGCAGGGCAACCTGGTGG+AGG | + | chr8.4:10905220-10905239 | None:intergenic | 60.0% | |
| GCGCTGGAACGGGTCCATGA+TGG | + | chr8.4:10904578-10904597 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 10903136 | 10905288 | 10903136 | ID=MS.gene064144 |
| chr8.4 | mRNA | 10903136 | 10905288 | 10903136 | ID=MS.gene064144.t1;Parent=MS.gene064144 |
| chr8.4 | exon | 10905207 | 10905288 | 10905207 | ID=MS.gene064144.t1.exon1;Parent=MS.gene064144.t1 |
| chr8.4 | CDS | 10905207 | 10905288 | 10905207 | ID=cds.MS.gene064144.t1;Parent=MS.gene064144.t1 |
| chr8.4 | exon | 10904113 | 10904252 | 10904113 | ID=MS.gene064144.t1.exon2;Parent=MS.gene064144.t1 |
| chr8.4 | CDS | 10904113 | 10904252 | 10904113 | ID=cds.MS.gene064144.t1;Parent=MS.gene064144.t1 |
| chr8.4 | exon | 10903662 | 10904024 | 10903662 | ID=MS.gene064144.t1.exon3;Parent=MS.gene064144.t1 |
| chr8.4 | CDS | 10903662 | 10904024 | 10903662 | ID=cds.MS.gene064144.t1;Parent=MS.gene064144.t1 |
| chr8.4 | exon | 10903451 | 10903513 | 10903451 | ID=MS.gene064144.t1.exon4;Parent=MS.gene064144.t1 |
| chr8.4 | CDS | 10903451 | 10903513 | 10903451 | ID=cds.MS.gene064144.t1;Parent=MS.gene064144.t1 |
| chr8.4 | exon | 10903136 | 10903369 | 10903136 | ID=MS.gene064144.t1.exon5;Parent=MS.gene064144.t1 |
| chr8.4 | CDS | 10903136 | 10903369 | 10903136 | ID=cds.MS.gene064144.t1;Parent=MS.gene064144.t1 |
| Gene Sequence |
| Protein sequence |
