Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064163.t1 | RHN64436.1 | 95.3 | 1097 | 50 | 1 | 1 | 1095 | 1 | 1097 | 0.00E+00 | 1887.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064163.t1 | A0A396IFS0 | 95.3 | 1097 | 50 | 1 | 1 | 1095 | 1 | 1097 | 0.0e+00 | 1887.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049660 | MS.gene064163 | 0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene064163 | 0.848481 | 5.96E-60 | -1.69E-46 |
| MS.gene050648 | MS.gene064163 | 0.815404 | 9.41E-52 | -1.69E-46 |
| MS.gene051629 | MS.gene064163 | 0.821566 | 3.77E-53 | -1.69E-46 |
| MS.gene052372 | MS.gene064163 | 0.802579 | 5.25E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene064163 | 0.813311 | 2.73E-51 | -1.69E-46 |
| MS.gene053417 | MS.gene064163 | 0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene064163 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene064163 | 0.801057 | 1.08E-48 | -1.69E-46 |
| MS.gene058198 | MS.gene064163 | 0.806012 | 1.01E-49 | -1.69E-46 |
| MS.gene058827 | MS.gene064163 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene059300 | MS.gene064163 | 0.826696 | 2.35E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene064163 | 0.837986 | 3.76E-57 | -1.69E-46 |
| MS.gene060565 | MS.gene064163 | 0.838235 | 3.24E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064163.t1 | MTR_4g123670 | 96.044 | 632 | 23 | 1 | 466 | 1095 | 10 | 641 | 0.0 | 1237 |
| MS.gene064163.t1 | MTR_4g123690 | 96.774 | 434 | 14 | 0 | 1 | 434 | 1 | 434 | 0.0 | 864 |
| MS.gene064163.t1 | MTR_7g021500 | 22.379 | 639 | 392 | 25 | 7 | 612 | 6 | 573 | 9.25e-17 | 86.3 |
| MS.gene064163.t1 | MTR_7g021500 | 22.379 | 639 | 392 | 25 | 7 | 612 | 6 | 573 | 9.90e-17 | 86.3 |
| MS.gene064163.t1 | MTR_1g116957 | 22.117 | 633 | 393 | 22 | 10 | 612 | 7 | 569 | 2.87e-15 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064163.t1 | AT3G17340 | 53.339 | 1093 | 474 | 12 | 7 | 1086 | 11 | 1080 | 0.0 | 1061 |
| MS.gene064163.t1 | AT3G17340 | 53.125 | 1088 | 487 | 12 | 7 | 1086 | 11 | 1083 | 0.0 | 1058 |
| MS.gene064163.t1 | AT3G59020 | 22.484 | 636 | 381 | 29 | 14 | 612 | 14 | 574 | 6.11e-14 | 77.4 |
| MS.gene064163.t1 | AT3G59020 | 22.484 | 636 | 381 | 29 | 14 | 612 | 14 | 574 | 6.21e-14 | 77.4 |
Find 262 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTCTCAGACCCTTTC+AGG | 0.144240 | 8.4:+11098900 | MS.gene064163:CDS |
| TTTATCAGCCAAACGTAAAA+AGG | 0.185848 | 8.4:+11101633 | MS.gene064163:CDS |
| GAATGTTAGCAAGGAGTTTA+AGG | 0.217005 | 8.4:+11098572 | MS.gene064163:CDS |
| ATTATACCTTCTACAATTTC+AGG | 0.249830 | 8.4:-11105258 | None:intergenic |
| AAGCAACCAGCGCCGTTCTA+TGG | 0.256132 | 8.4:+11101672 | MS.gene064163:CDS |
| CCTGTGCGGGTTTCTGCTGC+TGG | 0.267830 | 8.4:+11102800 | MS.gene064163:CDS |
| CAAGGGCACGAGAATTTCTT+TGG | 0.270343 | 8.4:-11099367 | None:intergenic |
| TCAGCTTCTCACTTCAATTA+TGG | 0.272429 | 8.4:+11103020 | MS.gene064163:CDS |
| AAGATGGAGGCATATCAATT+TGG | 0.282646 | 8.4:+11105292 | MS.gene064163:CDS |
| CAAGAACTGGATATGGAATT+AGG | 0.293684 | 8.4:+11106439 | MS.gene064163:CDS |
| AAAGAAATTGTGAATTTAGA+TGG | 0.297865 | 8.4:+11104910 | MS.gene064163:CDS |
| TCATATATGGCAGTTACTTT+GGG | 0.299686 | 8.4:+11102307 | MS.gene064163:intron |
| AGAGCACAATTTATAATATC+TGG | 0.301452 | 8.4:-11100588 | None:intergenic |
| TGTATATTCTCAATTGCTTA+TGG | 0.306590 | 8.4:+11102739 | MS.gene064163:CDS |
| CAATGTTGCTAACTATTACT+TGG | 0.316604 | 8.4:-11102966 | None:intergenic |
| GTGTGAACGTTGGTGGCGTC+GGG | 0.319092 | 8.4:-11098302 | None:intergenic |
| ATCATATATGGCAGTTACTT+TGG | 0.322261 | 8.4:+11102306 | MS.gene064163:intron |
| TGCAGATTCGGCACAAGTTC+CGG | 0.322757 | 8.4:-11098799 | None:intergenic |
| TGGCGTCGGGGCTGAGGGTT+TGG | 0.325331 | 8.4:-11098289 | None:intergenic |
| ACCGGCTCCTTCGGAACTTT+GGG | 0.325806 | 8.4:-11099321 | None:intergenic |
| CTGCACTGTTGCAGCAGGTT+TGG | 0.326449 | 8.4:+11104075 | MS.gene064163:CDS |
| GGGAGAGAATCCTCTCTAAA+AGG | 0.327040 | 8.4:-11100945 | None:intergenic |
| CGTTGGTGGCGTCGGGGCTG+AGG | 0.328761 | 8.4:-11098295 | None:intergenic |
| ACCTCATTGCTAGCGCAAAC+TGG | 0.333595 | 8.4:+11102538 | MS.gene064163:CDS |
| AAACTGCTTCACTTCACTAA+TGG | 0.340507 | 8.4:+11106033 | MS.gene064163:CDS |
| TGGAGAAGGGGTAGAAAATC+AGG | 0.345138 | 8.4:-11102946 | None:intergenic |
| CGAAGATCAAGAACTGGATA+TGG | 0.353329 | 8.4:+11106432 | MS.gene064163:CDS |
| TTGTAATTCTTTCAACTGAA+TGG | 0.353975 | 8.4:-11106062 | None:intergenic |
| AATCGCTGCTCTGGCAGTTA+TGG | 0.356153 | 8.4:+11103950 | MS.gene064163:CDS |
| CTCACTTCAATTATGGAAGT+TGG | 0.358075 | 8.4:+11103027 | MS.gene064163:CDS |
| GGTGTATTTCATCAATTTGT+TGG | 0.366527 | 8.4:+11099393 | MS.gene064163:CDS |
| TTCTCATTCATTACCAATGC+TGG | 0.367696 | 8.4:-11101195 | None:intergenic |
| TGAAATTGTAGAAGGTATAA+TGG | 0.368284 | 8.4:+11105260 | MS.gene064163:CDS |
| CGTTCAATTGTAGAAGGAAT+TGG | 0.369905 | 8.4:+11105000 | MS.gene064163:CDS |
| GAGTCCGAGATGAAGTTAAT+TGG | 0.371530 | 8.4:+11105372 | MS.gene064163:CDS |
| TACCGGCTCCTTCGGAACTT+TGG | 0.376762 | 8.4:-11099322 | None:intergenic |
| TCTTCTATGCATGATGAATT+CGG | 0.380112 | 8.4:-11104730 | None:intergenic |
| TGTTATCCTGAAATTGTAGA+AGG | 0.380797 | 8.4:+11105252 | MS.gene064163:CDS |
| GGCAGAAGGATATTGCTTAA+TGG | 0.382188 | 8.4:-11105040 | None:intergenic |
| CTTTGGATACGAGCTCCAAT+TGG | 0.386810 | 8.4:-11099350 | None:intergenic |
| ATGGGACGATGTGTGGGATA+TGG | 0.387245 | 8.4:-11103068 | None:intergenic |
| TAGAGGCTTCCAAAGGGAAC+TGG | 0.388145 | 8.4:-11105202 | None:intergenic |
| TTGTGGGTTCAGTCTCAAAA+TGG | 0.389428 | 8.4:+11103094 | MS.gene064163:CDS |
| CGGAAGAAGAATTTCTTGAT+AGG | 0.391493 | 8.4:+11106350 | MS.gene064163:CDS |
| CAAGAAGTATCCTGCTTATC+CGG | 0.391536 | 8.4:-11102773 | None:intergenic |
| TGTAGAAGGTATAATGGAAA+AGG | 0.392818 | 8.4:+11105266 | MS.gene064163:CDS |
| CTCTACTGAATTCGTTTAGT+AGG | 0.394398 | 8.4:+11100331 | MS.gene064163:CDS |
| AAGATGTATATTTGACTAGA+TGG | 0.394680 | 8.4:+11100406 | MS.gene064163:CDS |
| TGAATAGCAGATTGCAGATT+CGG | 0.400057 | 8.4:-11098811 | None:intergenic |
| GATTCAGAATCAGATACTTC+AGG | 0.400279 | 8.4:-11103996 | None:intergenic |
| GGTGTGAACGTTGGTGGCGT+CGG | 0.401130 | 8.4:-11098303 | None:intergenic |
| CCTTCTACAATTGAACGTTC+AGG | 0.402070 | 8.4:-11104994 | None:intergenic |
| TGGGGTGGTACCGGCTCCTT+CGG | 0.406814 | 8.4:-11099330 | None:intergenic |
| ACGGTCGAGCTCGGCGGTGG+AGG | 0.408213 | 8.4:-11098324 | None:intergenic |
| CAGTCTGGAGCCTTGGCCTC+AGG | 0.411678 | 8.4:+11103125 | MS.gene064163:CDS |
| GGCACAGGTGGAGCTGGAGG+GGG | 0.412142 | 8.4:-11104973 | None:intergenic |
| TTTGGATACGAGCTCCAATT+GGG | 0.414683 | 8.4:-11099349 | None:intergenic |
| CTGAATGCCTTCCCTGGGTG+TGG | 0.415942 | 8.4:+11106862 | MS.gene064163:CDS |
| GGCTGAAGATGATGAGGATG+AGG | 0.416573 | 8.4:+11106108 | MS.gene064163:CDS |
| TGCTAAAGCTGCCGGGGCAT+TGG | 0.418419 | 8.4:+11106375 | MS.gene064163:CDS |
| AAGATGCTGATGAGTATATA+CGG | 0.421687 | 8.4:+11101331 | MS.gene064163:CDS |
| AGTAGAGGAGCTAGAGTTGA+TGG | 0.422542 | 8.4:-11100315 | None:intergenic |
| GGAGCCGGTACCACCCCAAT+TGG | 0.423828 | 8.4:+11099335 | MS.gene064163:CDS |
| TGTCAGAGCTGCTGTCAGTT+TGG | 0.423854 | 8.4:+11104821 | MS.gene064163:CDS |
| GGGGAAATTACCGGCGGAAA+TGG | 0.424520 | 8.4:-11098384 | None:intergenic |
| GTTGGTGGCGTCGGGGCTGA+GGG | 0.426656 | 8.4:-11098294 | None:intergenic |
| ATCGCTGCTCTGGCAGTTAT+GGG | 0.430547 | 8.4:+11103951 | MS.gene064163:CDS |
| AGATGGAGGCATATCAATTT+GGG | 0.431380 | 8.4:+11105293 | MS.gene064163:CDS |
| CTGTGCGGGTTTCTGCTGCT+GGG | 0.438483 | 8.4:+11102801 | MS.gene064163:CDS |
| AAGAACAATAAGTGCATTGA+TGG | 0.438486 | 8.4:-11098875 | None:intergenic |
| CGTTCAGGCACAGGTGGAGC+TGG | 0.441676 | 8.4:-11104979 | None:intergenic |
| TATATTCAGGATGAAATTTG+TGG | 0.442837 | 8.4:+11101437 | MS.gene064163:intron |
| CCTGAACGTTCAATTGTAGA+AGG | 0.443900 | 8.4:+11104994 | MS.gene064163:CDS |
| ATTGAGCAACTCTTGAATCA+AGG | 0.444229 | 8.4:+11105986 | MS.gene064163:CDS |
| AGCAACCAGCGCCGTTCTAT+GGG | 0.447207 | 8.4:+11101673 | MS.gene064163:CDS |
| ACACAAATAGCACGAAGATA+TGG | 0.447226 | 8.4:-11105232 | None:intergenic |
| TCAACTAAAATCTTGAGAAT+AGG | 0.450318 | 8.4:-11098630 | None:intergenic |
| GCTAGCGCAAACTGGGTACT+TGG | 0.450659 | 8.4:+11102546 | MS.gene064163:CDS |
| TTTGGGGTACTGATGGCATA+TGG | 0.450672 | 8.4:+11102324 | MS.gene064163:CDS |
| TGACAGAGCAGACATGGAAA+TGG | 0.452858 | 8.4:+11099513 | MS.gene064163:CDS |
| ATTGATTATGCCGGATAAGC+AGG | 0.453612 | 8.4:+11102763 | MS.gene064163:CDS |
| GAAGCGAACCCAGTTCCCTT+TGG | 0.454401 | 8.4:+11105193 | MS.gene064163:CDS |
| TTTCCATGTCTGCTCTGTCA+TGG | 0.455872 | 8.4:-11099510 | None:intergenic |
| TGATGTAATTTCAAATGTGC+TGG | 0.457343 | 8.4:+11100975 | MS.gene064163:CDS |
| AGCTCCAATTGGGGTGGTAC+CGG | 0.462517 | 8.4:-11099339 | None:intergenic |
| AAGATTTGTCAACTTTGTTA+CGG | 0.462733 | 8.4:+11104749 | MS.gene064163:CDS |
| GTGTCTGACCTCTGGTAGAC+AGG | 0.464473 | 8.4:-11102580 | None:intergenic |
| TACTTCTTGTTATCCTGTGC+GGG | 0.466682 | 8.4:+11102787 | MS.gene064163:CDS |
| GAAATTCTCGTGCCCTTGCT+TGG | 0.467717 | 8.4:+11099372 | MS.gene064163:CDS |
| TAACGTCCAGTCTGGAGCCT+TGG | 0.470061 | 8.4:+11103118 | MS.gene064163:CDS |
| TATTTGACTAGATGGAAGTC+TGG | 0.471684 | 8.4:+11100414 | MS.gene064163:CDS |
| ATTTCAAATGTGCTGGAGAC+TGG | 0.474308 | 8.4:+11100982 | MS.gene064163:CDS |
| AGTAGCCTCAAAAGAGCTGC+TGG | 0.474345 | 8.4:-11105337 | None:intergenic |
| AATCCACGGCAGCAACAATT+CGG | 0.474353 | 8.4:-11098756 | None:intergenic |
| CAAGTAATAGTTAGCAACAT+TGG | 0.474445 | 8.4:+11102967 | MS.gene064163:CDS |
| GCCGTGGATCAGGCAGCAAT+TGG | 0.475253 | 8.4:+11104041 | MS.gene064163:CDS |
| CAGGCACAGGTGGAGCTGGA+GGG | 0.475984 | 8.4:-11104975 | None:intergenic |
| GTAGAAGGTATAATGGAAAA+GGG | 0.476574 | 8.4:+11105267 | MS.gene064163:CDS |
| TGAGCGTGGAATCGCTGCTC+TGG | 0.476673 | 8.4:+11103941 | MS.gene064163:CDS |
| GGTTCAGTTATTATTGAAGA+GGG | 0.478660 | 8.4:+11106403 | MS.gene064163:CDS |
| GAGACGGTCGAGCTCGGCGG+TGG | 0.478885 | 8.4:-11098327 | None:intergenic |
| CACATCGTCCCATCTCTTGT+GGG | 0.479373 | 8.4:+11103078 | MS.gene064163:CDS |
| GAAGATATGGCAAGCAATAG+AGG | 0.480052 | 8.4:-11105219 | None:intergenic |
| GAGACTGAACCCACAAGAGA+TGG | 0.481151 | 8.4:-11103087 | None:intergenic |
| TCAGTTTCAATTGAGTATGT+TGG | 0.485998 | 8.4:-11105105 | None:intergenic |
| TCTGTCATGCTATCTGTTGA+TGG | 0.486195 | 8.4:+11104772 | MS.gene064163:CDS |
| TTTGGCTGATAAACTGTCAA+TGG | 0.487883 | 8.4:-11101623 | None:intergenic |
| CATGTTGGAATCAGAAGGAA+TGG | 0.491369 | 8.4:-11101731 | None:intergenic |
| GTTCCGAATTGTTGCTGCCG+TGG | 0.491398 | 8.4:+11098753 | MS.gene064163:intron |
| ATCTGCAATCTTCCCAGCAT+TGG | 0.491649 | 8.4:+11101182 | MS.gene064163:CDS |
| TTAGAGAGGATTCTCTCCCT+AGG | 0.491861 | 8.4:+11100949 | MS.gene064163:CDS |
| GCTTATGGCATTGATTATGC+CGG | 0.492311 | 8.4:+11102754 | MS.gene064163:CDS |
| ATGATGAATTCGGAAAATTC+TGG | 0.492503 | 8.4:-11104720 | None:intergenic |
| TGTATAGGACATGTCAGATT+GGG | 0.493213 | 8.4:+11101305 | MS.gene064163:intron |
| TGGTGTTATTTCAATGTCAA+AGG | 0.494392 | 8.4:+11101508 | MS.gene064163:CDS |
| GGCTGAGGGTTTGGTTGAGA+AGG | 0.494636 | 8.4:-11098280 | None:intergenic |
| ATTTCATCAATTTGTTGGAA+AGG | 0.495585 | 8.4:+11099398 | MS.gene064163:CDS |
| TTGAAATTACATCAAAACCT+AGG | 0.495804 | 8.4:-11100966 | None:intergenic |
| ACACATCGTCCCATCTCTTG+TGG | 0.496692 | 8.4:+11103077 | MS.gene064163:CDS |
| TGAAATTTGTGGATGGAGGG+AGG | 0.496969 | 8.4:+11101448 | MS.gene064163:CDS |
| AAAATGGCTAACGTCCAGTC+TGG | 0.497193 | 8.4:+11103110 | MS.gene064163:CDS |
| CTGAGGCCAAGGCTCCAGAC+TGG | 0.497684 | 8.4:-11103124 | None:intergenic |
| ATAATGGAAAAGGGTGAAGA+TGG | 0.498545 | 8.4:+11105276 | MS.gene064163:CDS |
| TCAGGCACAGGTGGAGCTGG+AGG | 0.500164 | 8.4:-11104976 | None:intergenic |
| TCTACTGAATTCGTTTAGTA+GGG | 0.500516 | 8.4:+11100332 | MS.gene064163:CDS |
| TGCTAACTATTACTTGGAGA+AGG | 0.503788 | 8.4:-11102960 | None:intergenic |
| AGGAGATGGAAAGGGAAGTG+AGG | 0.504262 | 8.4:-11098359 | None:intergenic |
| CGGCGGAAATGGAGAGGAGA+TGG | 0.505405 | 8.4:-11098373 | None:intergenic |
| GATAGGTATGCTAAAGCTGC+CGG | 0.508067 | 8.4:+11106367 | MS.gene064163:CDS |
| ATAGGTATGCTAAAGCTGCC+GGG | 0.508773 | 8.4:+11106368 | MS.gene064163:CDS |
| ACAATTGAACGTTCAGGCAC+AGG | 0.509772 | 8.4:-11104988 | None:intergenic |
| ATGATGGTATTTGTCTATCA+AGG | 0.509981 | 8.4:-11106791 | None:intergenic |
| AGGCACAGGTGGAGCTGGAG+GGG | 0.510321 | 8.4:-11104974 | None:intergenic |
| AAATGGAGAGGAGATGGAAA+GGG | 0.510970 | 8.4:-11098367 | None:intergenic |
| TGAAGGTGTAAAGCAGTCAT+TGG | 0.512410 | 8.4:+11105125 | MS.gene064163:CDS |
| AAAGAATTACAAGATGAGAA+AGG | 0.513753 | 8.4:+11106073 | MS.gene064163:CDS |
| AGGATGAAATTTGTGGATGG+AGG | 0.517304 | 8.4:+11101444 | MS.gene064163:intron |
| GACGGAGAGACGGTCGAGCT+CGG | 0.517469 | 8.4:-11098333 | None:intergenic |
| GCTAACTATTACTTGGAGAA+GGG | 0.519103 | 8.4:-11102959 | None:intergenic |
| TGAAATTACATCAAAACCTA+GGG | 0.519223 | 8.4:-11100965 | None:intergenic |
| AGTGAGAAGCTGAAATAAGA+TGG | 0.520318 | 8.4:-11103010 | None:intergenic |
| ATGTATAGGACATGTCAGAT+TGG | 0.520551 | 8.4:+11101304 | MS.gene064163:intron |
| TGAGAAAGGAGATGAAGAAG+AGG | 0.526073 | 8.4:+11106087 | MS.gene064163:CDS |
| CCTCATTGCTAGCGCAAACT+GGG | 0.526833 | 8.4:+11102539 | MS.gene064163:CDS |
| AACATTCGAAGGTGTGGCGC+CGG | 0.529745 | 8.4:-11098556 | None:intergenic |
| GGATGTCGAAGATCAAGAAC+TGG | 0.532331 | 8.4:+11106426 | MS.gene064163:CDS |
| TGGCAGTTATGGGTCAGACA+TGG | 0.536229 | 8.4:+11103961 | MS.gene064163:CDS |
| TTCAATTATGGAAGTTGGAG+AGG | 0.536320 | 8.4:+11103032 | MS.gene064163:CDS |
| CGCCGCAATGTTGATATCAC+CGG | 0.536536 | 8.4:+11098537 | MS.gene064163:CDS |
| TCAACAGGAGGTGAAAATCA+AGG | 0.536898 | 8.4:+11098474 | MS.gene064163:intron |
| TCTCATTCATTACCAATGCT+GGG | 0.537036 | 8.4:-11101194 | None:intergenic |
| TTCAGTTATTATTGAAGAGG+GGG | 0.537554 | 8.4:+11106405 | MS.gene064163:CDS |
| TTGAGCAACTCTTGAATCAA+GGG | 0.538482 | 8.4:+11105987 | MS.gene064163:CDS |
| CAGTTACTTTGGGGTACTGA+TGG | 0.538531 | 8.4:+11102317 | MS.gene064163:intron |
| CATTACTTACTGCGAAATGT+AGG | 0.538556 | 8.4:-11099564 | None:intergenic |
| CTTACCAATTAACTTCATCT+CGG | 0.540765 | 8.4:-11105376 | None:intergenic |
| TCCAATAGAGTTGTAAAATG+TGG | 0.541694 | 8.4:-11101159 | None:intergenic |
| TGTGAAACATAGTTTATGGC+CGG | 0.542404 | 8.4:+11098780 | MS.gene064163:CDS |
| TCAACACACACCTGAGGCCA+AGG | 0.542867 | 8.4:-11103135 | None:intergenic |
| AACTGGGTACTTGGAGAACT+AGG | 0.542910 | 8.4:+11102555 | MS.gene064163:CDS |
| AAACTAACCTGTGTGGATAA+CGG | 0.543886 | 8.4:-11104104 | None:intergenic |
| CATCTCCTCTCCATTTCCGC+CGG | 0.544957 | 8.4:+11098374 | MS.gene064163:CDS |
| GCCAATTGCTGCCTGATCCA+CGG | 0.545947 | 8.4:-11104042 | None:intergenic |
| GGTTGAAGAATATGAAGAAA+CGG | 0.547124 | 8.4:+11106330 | MS.gene064163:CDS |
| GGTGGAGGTGTGAACGTTGG+TGG | 0.547293 | 8.4:-11098309 | None:intergenic |
| AACTCCTTGCTAACATTCGA+AGG | 0.548924 | 8.4:-11098567 | None:intergenic |
| TTCAATTAACACAGGGATGG+AGG | 0.549854 | 8.4:+11101127 | MS.gene064163:intron |
| TCGATGGTTCAAACTCTACA+TGG | 0.550475 | 8.4:+11098848 | MS.gene064163:CDS |
| GGATGAAATTTGTGGATGGA+GGG | 0.551554 | 8.4:+11101445 | MS.gene064163:intron |
| AAAAGTGCAGTAAACTTGCT+TGG | 0.553241 | 8.4:+11101488 | MS.gene064163:CDS |
| ACAAGAGATGGGACGATGTG+TGG | 0.553250 | 8.4:-11103075 | None:intergenic |
| GCATTTGCATATAGTGAGGA+TGG | 0.554236 | 8.4:-11099542 | None:intergenic |
| CTTCCCTCGTCACACGGCAT+AGG | 0.554422 | 8.4:+11100460 | MS.gene064163:CDS |
| TGTGCGGGTTTCTGCTGCTG+GGG | 0.558804 | 8.4:+11102802 | MS.gene064163:CDS |
| CATGTTCATACTATATCTGA+AGG | 0.559424 | 8.4:-11101363 | None:intergenic |
| CTGCAATAGGTTGTTGAGCG+TGG | 0.561240 | 8.4:+11103927 | MS.gene064163:intron |
| CAGAATAGTCATCTTATCGA+TGG | 0.563352 | 8.4:+11098832 | MS.gene064163:CDS |
| CTGTCATGCTATCTGTTGAT+GGG | 0.563599 | 8.4:+11104773 | MS.gene064163:CDS |
| AGAAGAGGCTGAAGATGATG+AGG | 0.563759 | 8.4:+11106102 | MS.gene064163:CDS |
| ATACTTCTTGTTATCCTGTG+CGG | 0.565303 | 8.4:+11102786 | MS.gene064163:CDS |
| GTTCAGTTATTATTGAAGAG+GGG | 0.565845 | 8.4:+11106404 | MS.gene064163:CDS |
| GTCAGACATGGGAAGACTCT+AGG | 0.566775 | 8.4:+11103973 | MS.gene064163:CDS |
| TTGATGAAATACACCAAGCA+AGG | 0.568054 | 8.4:-11099385 | None:intergenic |
| TACCATCATGTGCTTATACA+AGG | 0.568163 | 8.4:+11106805 | MS.gene064163:CDS |
| GCTGCCGGGGCATTGGAAGA+TGG | 0.568216 | 8.4:+11106382 | MS.gene064163:CDS |
| TCCCAAAGTTCCGAAGGAGC+CGG | 0.568551 | 8.4:+11099320 | MS.gene064163:CDS |
| TGGTTCAGTTATTATTGAAG+AGG | 0.569142 | 8.4:+11106402 | MS.gene064163:CDS |
| GGCGGTGGAGGTGTGAACGT+TGG | 0.576113 | 8.4:-11098312 | None:intergenic |
| TGATTGCAGAGTGGCATGCA+TGG | 0.578337 | 8.4:+11104851 | MS.gene064163:CDS |
| AGAGGCTTCCAAAGGGAACT+GGG | 0.578676 | 8.4:-11105201 | None:intergenic |
| TGAACCATCTTCCAATGCCC+CGG | 0.578708 | 8.4:-11106386 | None:intergenic |
| TGCTCTGTCATGGTTCGCTA+CGG | 0.578713 | 8.4:-11099500 | None:intergenic |
| AAACTCATGACGAGCTGCGA+CGG | 0.579274 | 8.4:-11106838 | None:intergenic |
| TCAATGGAAGTCTCCATTGG+TGG | 0.580383 | 8.4:-11101607 | None:intergenic |
| ATGGAAAAGGGTGAAGATGG+AGG | 0.581403 | 8.4:+11105279 | MS.gene064163:CDS |
| AGAATCCTCTCTAAAAGGAA+AGG | 0.581742 | 8.4:-11100940 | None:intergenic |
| GAAATGGAGAGGAGATGGAA+AGG | 0.583102 | 8.4:-11098368 | None:intergenic |
| CTTGCTAACATTCGAAGGTG+TGG | 0.583712 | 8.4:-11098562 | None:intergenic |
| GTTTCCTATGCCGTGTGACG+AGG | 0.585976 | 8.4:-11100464 | None:intergenic |
| AGACTGAACCCACAAGAGAT+GGG | 0.586000 | 8.4:-11103086 | None:intergenic |
| TTCAGGATGAAATTTGTGGA+TGG | 0.586043 | 8.4:+11101441 | MS.gene064163:intron |
| AGTGAGGAGCGACGGAGAGA+CGG | 0.586825 | 8.4:-11098343 | None:intergenic |
| TTTGAATCCCAAAGTTCCGA+AGG | 0.587938 | 8.4:+11099314 | MS.gene064163:CDS |
| CCAGCAGCAGAAACCCGCAC+AGG | 0.588649 | 8.4:-11102800 | None:intergenic |
| CTGCTTCACTTCACTAATGG+AGG | 0.589139 | 8.4:+11106036 | MS.gene064163:CDS |
| CTGTCAATGGAAGTCTCCAT+TGG | 0.590095 | 8.4:-11101610 | None:intergenic |
| GAAAGGGAAGTGAGGAGCGA+CGG | 0.593521 | 8.4:-11098351 | None:intergenic |
| CAAGAGATGGGACGATGTGT+GGG | 0.595039 | 8.4:-11103074 | None:intergenic |
| ATGTTGGAATCAGAAGGAAT+GGG | 0.596110 | 8.4:-11101730 | None:intergenic |
| CAAGCAATAGAGGCTTCCAA+AGG | 0.597557 | 8.4:-11105209 | None:intergenic |
| AAGCAATAGAGGCTTCCAAA+GGG | 0.601007 | 8.4:-11105208 | None:intergenic |
| ACATACTCAATTGAAACTGA+AGG | 0.601068 | 8.4:+11105108 | MS.gene064163:CDS |
| GTCCTTGTATAAGCACATGA+TGG | 0.601157 | 8.4:-11106807 | None:intergenic |
| CATATATGGCAGTTACTTTG+GGG | 0.601229 | 8.4:+11102308 | MS.gene064163:intron |
| CTAACTATTACTTGGAGAAG+GGG | 0.602486 | 8.4:-11102958 | None:intergenic |
| CATGTGCTTATACAAGGACA+AGG | 0.603007 | 8.4:+11106811 | MS.gene064163:CDS |
| CAACCAGCGCCGTTCTATGG+GGG | 0.607565 | 8.4:+11101675 | MS.gene064163:CDS |
| GGGGTACTGATGGCATATGG+TGG | 0.607880 | 8.4:+11102327 | MS.gene064163:CDS |
| GGCAGTTATGGGTCAGACAT+GGG | 0.608317 | 8.4:+11103962 | MS.gene064163:CDS |
| GAGAAGGGGTAGAAAATCAG+GGG | 0.609077 | 8.4:-11102944 | None:intergenic |
| TGAGACATGTTGGAATCAGA+AGG | 0.613441 | 8.4:-11101736 | None:intergenic |
| GGAGAAGGGGTAGAAAATCA+GGG | 0.613689 | 8.4:-11102945 | None:intergenic |
| TAACAATGCTCATTCGAACA+CGG | 0.614541 | 8.4:+11102478 | MS.gene064163:CDS |
| GAACCATGACAGAGCAGACA+TGG | 0.616303 | 8.4:+11099507 | MS.gene064163:CDS |
| AGCTAGAGTTGATGGCATGT+AGG | 0.616932 | 8.4:-11100307 | None:intergenic |
| TTTCCTATGCCGTGTGACGA+GGG | 0.617633 | 8.4:-11100463 | None:intergenic |
| CAAGCTCTATATGTGGCAGA+AGG | 0.617895 | 8.4:-11105054 | None:intergenic |
| CGCCGGTGATATCAACATTG+CGG | 0.619290 | 8.4:-11098539 | None:intergenic |
| TTGGACAATGTAGTAATGCA+TGG | 0.621160 | 8.4:-11105086 | None:intergenic |
| CACACCTTCGAATGTTAGCA+AGG | 0.623375 | 8.4:+11098563 | MS.gene064163:CDS |
| CCCAGTTTGCGCTAGCAATG+AGG | 0.625087 | 8.4:-11102539 | None:intergenic |
| GTGTGGTACAGAAACAGCTA+TGG | 0.626514 | 8.4:-11102517 | None:intergenic |
| TTGGATACGAGCTCCAATTG+GGG | 0.629397 | 8.4:-11099348 | None:intergenic |
| ATTGAACGTTCAGGCACAGG+TGG | 0.629530 | 8.4:-11104985 | None:intergenic |
| ACATGAGCAAGCTCTATATG+TGG | 0.630767 | 8.4:-11105061 | None:intergenic |
| GATTGCAGAGTGGCATGCAT+GGG | 0.631699 | 8.4:+11104852 | MS.gene064163:CDS |
| AATTACCGGCGGAAATGGAG+AGG | 0.633426 | 8.4:-11098379 | None:intergenic |
| CTACTAAACGAATTCAGTAG+AGG | 0.633526 | 8.4:-11100330 | None:intergenic |
| ACTATGTTTCACAAAATCCA+CGG | 0.637699 | 8.4:-11098770 | None:intergenic |
| GCTAACACCGTTATCCACAC+AGG | 0.637921 | 8.4:+11104097 | MS.gene064163:CDS |
| TGTGAACGTTGGTGGCGTCG+GGG | 0.637949 | 8.4:-11098301 | None:intergenic |
| GATACGAGCTCCAATTGGGG+TGG | 0.640240 | 8.4:-11099345 | None:intergenic |
| GCAACCAGCGCCGTTCTATG+GGG | 0.641275 | 8.4:+11101674 | MS.gene064163:CDS |
| ATATAAACCACACCCAGGGA+AGG | 0.642312 | 8.4:-11106869 | None:intergenic |
| TTGTTTAAATTAGGACTCGG+AGG | 0.646414 | 8.4:+11106309 | MS.gene064163:intron |
| TGATGAAATACACCAAGCAA+GGG | 0.657773 | 8.4:-11099384 | None:intergenic |
| TGGAAATATAAACCACACCC+AGG | 0.658235 | 8.4:-11106874 | None:intergenic |
| GGCGCTCAAACTAACCTGTG+TGG | 0.662812 | 8.4:-11104111 | None:intergenic |
| AGCATTGGTAATGAATGAGA+AGG | 0.663030 | 8.4:+11101197 | MS.gene064163:CDS |
| TAGGTATGCTAAAGCTGCCG+GGG | 0.663082 | 8.4:+11106369 | MS.gene064163:CDS |
| GATGAGAGTAATCTCCGCCA+TGG | 0.663669 | 8.4:-11098252 | None:intergenic |
| TTGAATCAAGGGAAGTCATG+TGG | 0.667733 | 8.4:+11105998 | MS.gene064163:CDS |
| GTAGGCATTTGCATATAGTG+AGG | 0.668326 | 8.4:-11099546 | None:intergenic |
| GGAGAGACGGTCGAGCTCGG+CGG | 0.677569 | 8.4:-11098330 | None:intergenic |
| GGCATATGGTGGTCTGCAAG+AGG | 0.685318 | 8.4:+11102338 | MS.gene064163:CDS |
| GGAAATATAAACCACACCCA+GGG | 0.689031 | 8.4:-11106873 | None:intergenic |
| TGACTCTGAAGATTACGATG+AGG | 0.694385 | 8.4:+11106144 | MS.gene064163:CDS |
| ACTAGGCTCCTGTCTACCAG+AGG | 0.694654 | 8.4:+11102572 | MS.gene064163:CDS |
| GAAACAGCTATGGTATACAG+TGG | 0.713847 | 8.4:-11102507 | None:intergenic |
| TTTGCGCTAGCAATGAGGTG+TGG | 0.715406 | 8.4:-11102534 | None:intergenic |
| GGTCTGCAATGATTGCAGAG+TGG | 0.763171 | 8.4:+11104842 | MS.gene064163:CDS |
| AGAAGGGGTAGAAAATCAGG+GGG | 0.766386 | 8.4:-11102943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 11098254 | 11106906 | 11098254 | ID=MS.gene064163 |
| chr8.4 | mRNA | 11098254 | 11106906 | 11098254 | ID=MS.gene064163.t1;Parent=MS.gene064163 |
| chr8.4 | exon | 11098254 | 11098395 | 11098254 | ID=MS.gene064163.t1.exon1;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11098254 | 11098395 | 11098254 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11098481 | 11098656 | 11098481 | ID=MS.gene064163.t1.exon2;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11098481 | 11098656 | 11098481 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11098754 | 11098921 | 11098754 | ID=MS.gene064163.t1.exon3;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11098754 | 11098921 | 11098754 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11099309 | 11099419 | 11099309 | ID=MS.gene064163.t1.exon4;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11099309 | 11099419 | 11099309 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11099499 | 11099576 | 11099499 | ID=MS.gene064163.t1.exon5;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11099499 | 11099576 | 11099499 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11100300 | 11100496 | 11100300 | ID=MS.gene064163.t1.exon6;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11100300 | 11100496 | 11100300 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11100581 | 11100641 | 11100581 | ID=MS.gene064163.t1.exon7;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11100581 | 11100641 | 11100581 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11100934 | 11101008 | 11100934 | ID=MS.gene064163.t1.exon8;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11100934 | 11101008 | 11100934 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11101141 | 11101218 | 11101141 | ID=MS.gene064163.t1.exon9;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11101141 | 11101218 | 11101141 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11101312 | 11101374 | 11101312 | ID=MS.gene064163.t1.exon10;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11101312 | 11101374 | 11101312 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11101446 | 11101529 | 11101446 | ID=MS.gene064163.t1.exon11;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11101446 | 11101529 | 11101446 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11101604 | 11101776 | 11101604 | ID=MS.gene064163.t1.exon12;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11101604 | 11101776 | 11101604 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11102320 | 11102359 | 11102320 | ID=MS.gene064163.t1.exon13;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11102320 | 11102359 | 11102320 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11102450 | 11102593 | 11102450 | ID=MS.gene064163.t1.exon14;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11102450 | 11102593 | 11102450 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11102725 | 11102844 | 11102725 | ID=MS.gene064163.t1.exon15;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11102725 | 11102844 | 11102725 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11102931 | 11103146 | 11102931 | ID=MS.gene064163.t1.exon16;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11102931 | 11103146 | 11102931 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11103936 | 11104118 | 11103936 | ID=MS.gene064163.t1.exon17;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11103936 | 11104118 | 11103936 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11104709 | 11105393 | 11104709 | ID=MS.gene064163.t1.exon18;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11104709 | 11105393 | 11104709 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11105966 | 11106165 | 11105966 | ID=MS.gene064163.t1.exon19;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11105966 | 11106165 | 11105966 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11106322 | 11106460 | 11106322 | ID=MS.gene064163.t1.exon20;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11106322 | 11106460 | 11106322 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| chr8.4 | exon | 11106752 | 11106906 | 11106752 | ID=MS.gene064163.t1.exon21;Parent=MS.gene064163.t1 |
| chr8.4 | CDS | 11106752 | 11106906 | 11106752 | ID=cds.MS.gene064163.t1;Parent=MS.gene064163.t1 |
| Gene Sequence |
| Protein sequence |
