Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052372.t1 | XP_003607405.2 | 99.6 | 1077 | 4 | 0 | 1 | 1077 | 1 | 1077 | 0.00E+00 | 2116.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052372.t1 | Q9SMV6 | 86.2 | 1077 | 147 | 1 | 1 | 1077 | 1 | 1075 | 0.0e+00 | 1843.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052372.t1 | G7JRR9 | 99.6 | 1077 | 4 | 0 | 1 | 1077 | 1 | 1077 | 0.0e+00 | 2116.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052372 | MS.gene064163 | 0.802579 | 5.25E-49 | -1.69E-46 |
| MS.gene052372 | MS.gene065872 | 0.939045 | 2.46E-99 | -1.69E-46 |
| MS.gene052372 | MS.gene065873 | 0.974402 | 4.31E-138 | -1.69E-46 |
| MS.gene052372 | MS.gene065874 | 0.895834 | 6.57E-76 | -1.69E-46 |
| MS.gene052372 | MS.gene09124 | 0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene052372 | MS.gene09287 | 0.800754 | 1.24E-48 | -1.69E-46 |
| MS.gene052372 | MS.gene26803 | 0.822889 | 1.86E-53 | -1.69E-46 |
| MS.gene052372 | MS.gene37822 | 0.838769 | 2.36E-57 | -1.69E-46 |
| MS.gene052372 | MS.gene39813 | 0.837263 | 5.76E-57 | -1.69E-46 |
| MS.gene052372 | MS.gene62190 | 0.835444 | 1.67E-56 | -1.69E-46 |
| MS.gene052372 | MS.gene78741 | 0.802444 | 5.59E-49 | -1.69E-46 |
| MS.gene052372 | MS.gene99383 | 0.836556 | 8.73E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052372.t1 | MTR_4g077660 | 99.629 | 1077 | 4 | 0 | 1 | 1077 | 1 | 1077 | 0.0 | 2230 |
| MS.gene052372.t1 | MTR_5g007790 | 91.558 | 1078 | 90 | 1 | 1 | 1077 | 1 | 1078 | 0.0 | 2040 |
| MS.gene052372.t1 | MTR_8g013700 | 65.767 | 1037 | 243 | 11 | 1 | 1031 | 1 | 931 | 0.0 | 1303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052372.t1 | AT5G17020 | 86.165 | 1077 | 147 | 1 | 1 | 1077 | 1 | 1075 | 0.0 | 1941 |
| MS.gene052372.t1 | AT5G17020 | 84.773 | 1077 | 147 | 2 | 1 | 1077 | 1 | 1060 | 0.0 | 1900 |
| MS.gene052372.t1 | AT3G03110 | 82.823 | 1077 | 184 | 1 | 1 | 1077 | 1 | 1076 | 0.0 | 1855 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATAGTCCATTAACAAAT+TGG | 0.194943 | 4.4:-33191134 | None:intergenic |
| ACAAGTGTTGCATCTTCTTT+AGG | 0.217241 | 4.4:+33188968 | MS.gene052372:CDS |
| TGATGTTCTTGTTCAATATA+AGG | 0.232496 | 4.4:+33185080 | MS.gene052372:CDS |
| CTCATAGTTGAAGATGAAAA+TGG | 0.234394 | 4.4:+33185027 | MS.gene052372:CDS |
| GAATATAACAACTTTGCTTT+TGG | 0.253627 | 4.4:+33184020 | MS.gene052372:CDS |
| TGTTTACTATTGTAGCAAAA+AGG | 0.257518 | 4.4:-33189498 | None:intergenic |
| CAGGTGGCATCCCTTCAATT+TGG | 0.261199 | 4.4:+33183371 | MS.gene052372:intron |
| GTATCAGGAAATCTCGTATA+TGG | 0.269276 | 4.4:-33191188 | None:intergenic |
| TAAATTGATCGAGACATTCT+TGG | 0.269912 | 4.4:+33189360 | MS.gene052372:CDS |
| AGCAAGCAAAAGACCTGATT+TGG | 0.273590 | 4.4:-33188245 | None:intergenic |
| TATTCTCTTGAGTGGATTCC+AGG | 0.283589 | 4.4:-33184002 | None:intergenic |
| CAGGTTACCCAATTTGTTAA+TGG | 0.289036 | 4.4:+33191126 | MS.gene052372:intron |
| CAAAGAATGCTTTCTATTCC+AGG | 0.320623 | 4.4:+33191610 | MS.gene052372:CDS |
| CATCTCCGACATCATTGTTC+AGG | 0.324705 | 4.4:+33181379 | MS.gene052372:CDS |
| CAAGTGTTGCATCTTCTTTA+GGG | 0.333806 | 4.4:+33188969 | MS.gene052372:CDS |
| CACGTATCAGCTCAGCCCTT+TGG | 0.340622 | 4.4:-33183058 | None:intergenic |
| CAGGTATCGGCAATGCTTCC+TGG | 0.341710 | 4.4:+33184892 | MS.gene052372:intron |
| GGAGATGCTGAAGAAGTTTC+AGG | 0.344422 | 4.4:+33190455 | MS.gene052372:CDS |
| TGCGAACTTGATGGGACTTC+AGG | 0.345750 | 4.4:+33184258 | MS.gene052372:CDS |
| AATAGGTCTGTTTGGACTAC+TGG | 0.348346 | 4.4:+33184176 | MS.gene052372:intron |
| AGGTGGCATCCCTTCAATTT+GGG | 0.357467 | 4.4:+33183372 | MS.gene052372:intron |
| GTTTGAGCCACATCGAAGTT+TGG | 0.357770 | 4.4:+33184219 | MS.gene052372:CDS |
| TTGAAAATAATAGGTCTGTT+TGG | 0.359269 | 4.4:+33184168 | MS.gene052372:intron |
| AATACACTCTGCTGGGCAAT+TGG | 0.360947 | 4.4:+33185751 | MS.gene052372:CDS |
| ACGTATCAGCTCAGCCCTTT+GGG | 0.361354 | 4.4:-33183057 | None:intergenic |
| CATTGCATGCCTTCTTATCA+TGG | 0.362756 | 4.4:+33183093 | MS.gene052372:CDS |
| GTGTGCTAACTGAGCCCCTT+TGG | 0.363467 | 4.4:+33190928 | MS.gene052372:CDS |
| TTGACCTTTCAGCTGGAAAC+TGG | 0.366423 | 4.4:+33190906 | MS.gene052372:intron |
| GACTGTGCTTAATATATTGC+AGG | 0.367551 | 4.4:+33188450 | MS.gene052372:CDS |
| TCAGCAATTGAAGCTTGTTA+TGG | 0.371534 | 4.4:+33190365 | MS.gene052372:intron |
| ATTCAATCATGTGGGCATTT+CGG | 0.372536 | 4.4:+33190388 | MS.gene052372:CDS |
| TATATTCATGGGCCAATTGC+AGG | 0.373962 | 4.4:+33183430 | MS.gene052372:CDS |
| CAGAAATGGATGGAAATTAT+AGG | 0.375812 | 4.4:+33188379 | MS.gene052372:intron |
| AGATTTCGATATGCTGGAAC+TGG | 0.377398 | 4.4:-33183256 | None:intergenic |
| TTCGATGCAGTTCGGTTAAG+AGG | 0.380505 | 4.4:+33189329 | MS.gene052372:intron |
| ACCAATGATGGATCCTGTTC+TGG | 0.380819 | 4.4:+33189426 | MS.gene052372:CDS |
| ACCTCAGCTGTTGTCATGTT+CGG | 0.382138 | 4.4:-33191035 | None:intergenic |
| TTCTTATCATGGATCCCCTT+GGG | 0.383666 | 4.4:+33183104 | MS.gene052372:CDS |
| GCTCAACATTATATTAGTTC+AGG | 0.386914 | 4.4:+33181569 | MS.gene052372:CDS |
| ATAAAGCTTCGCCATCTTGC+TGG | 0.392745 | 4.4:-33181762 | None:intergenic |
| GAGGGAGACTCTTATTTACT+TGG | 0.392816 | 4.4:+33185277 | MS.gene052372:CDS |
| TCAACTATGAGAACCTCTTC+GGG | 0.394916 | 4.4:-33185015 | None:intergenic |
| GAAAGGAATATTGCTGAAAC+AGG | 0.395957 | 4.4:+33190417 | MS.gene052372:CDS |
| AAGGCGTAATTAAATATAGA+TGG | 0.397062 | 4.4:+33181315 | MS.gene052372:CDS |
| ACAATTTGTGCCACCAATGA+TGG | 0.397908 | 4.4:+33189414 | MS.gene052372:CDS |
| CAAGATGTATGGTATATTCA+TGG | 0.397963 | 4.4:+33183418 | MS.gene052372:CDS |
| AAGAACATCATTGTCCTTCA+AGG | 0.398870 | 4.4:-33185067 | None:intergenic |
| ATGACTTGAAGCCACATATC+AGG | 0.399612 | 4.4:-33180294 | None:intergenic |
| CAGTACCTGCTCTTCTATCA+TGG | 0.400683 | 4.4:-33185788 | None:intergenic |
| TTCAACTATGAGAACCTCTT+CGG | 0.400992 | 4.4:-33185016 | None:intergenic |
| TTTGTATCTGAACTTCTATC+AGG | 0.404322 | 4.4:+33187982 | MS.gene052372:CDS |
| AAGAACTTAAGCCGGTGCTC+AGG | 0.405513 | 4.4:-33190147 | None:intergenic |
| TGTGCTAACTGAGCCCCTTT+GGG | 0.407002 | 4.4:+33190929 | MS.gene052372:CDS |
| TGTTTACTTGACAGATTATG+AGG | 0.407197 | 4.4:+33185258 | MS.gene052372:intron |
| ATGCTTCCTGGTATGGTTGA+TGG | 0.407442 | 4.4:+33184904 | MS.gene052372:CDS |
| TGGGCAATTGGATCTATATC+TGG | 0.409569 | 4.4:+33185763 | MS.gene052372:CDS |
| TGAGACACATCCTGGAGTTC+AGG | 0.412850 | 4.4:+33186797 | MS.gene052372:CDS |
| CTTCTTATCATGGATCCCCT+TGG | 0.418863 | 4.4:+33183103 | MS.gene052372:CDS |
| TGCAGCTTCTGCGAACTTGA+TGG | 0.419691 | 4.4:+33184249 | MS.gene052372:CDS |
| CTTAGATCCAGTGCCGTAGA+AGG | 0.421045 | 4.4:-33179907 | None:intergenic |
| GATCCAAACACACCTGCAAT+TGG | 0.423360 | 4.4:-33183442 | None:intergenic |
| TTAGCCGCTGCGACAAGATC+AGG | 0.425401 | 4.4:-33181786 | None:intergenic |
| TGAAGGATCAAGATGTAATA+CGG | 0.426213 | 4.4:+33188428 | MS.gene052372:CDS |
| TTGCCATGTGCATATGCCTC+GGG | 0.433269 | 4.4:-33183598 | None:intergenic |
| GAGTGTATTCAAATTGTTCC+AGG | 0.433903 | 4.4:-33185737 | None:intergenic |
| ACTGATCTGTTTGTCAAGCC+AGG | 0.438397 | 4.4:+33190209 | MS.gene052372:CDS |
| TGAATTTCTTCAGCGGTTGA+TGG | 0.438441 | 4.4:+33188217 | MS.gene052372:CDS |
| TCTTTCACTCAGGTTCTTGA+AGG | 0.445088 | 4.4:+33181296 | MS.gene052372:intron |
| GTTGATGGAGCTCCCAAATC+AGG | 0.445324 | 4.4:+33188232 | MS.gene052372:CDS |
| AAATAGTCCATTAACAAATT+GGG | 0.445619 | 4.4:-33191133 | None:intergenic |
| TCAAGATCTGCAATAGTGAT+TGG | 0.450448 | 4.4:-33188009 | None:intergenic |
| AGCTTAAACAATCATTGAAC+AGG | 0.451004 | 4.4:+33181984 | MS.gene052372:CDS |
| ATCGGCAATGCTTCCTGGTA+TGG | 0.453160 | 4.4:+33184897 | MS.gene052372:CDS |
| AGATGAAATGGTGGACTCAT+AGG | 0.454147 | 4.4:+33191657 | MS.gene052372:CDS |
| GATCGAGACATTCTTGGATA+AGG | 0.455063 | 4.4:+33189366 | MS.gene052372:CDS |
| GCATCTCCAACAACAGGTTC+AGG | 0.456467 | 4.4:-33190440 | None:intergenic |
| ACAATTTGAATACACTCTGC+TGG | 0.457803 | 4.4:+33185743 | MS.gene052372:CDS |
| CTAGCATAATCTCCCAGAAC+AGG | 0.458405 | 4.4:-33189439 | None:intergenic |
| ACCTCAGATTCCCTTGCATC+AGG | 0.459982 | 4.4:-33189469 | None:intergenic |
| TTTCATCTTGCAACTCGATA+GGG | 0.460559 | 4.4:-33191642 | None:intergenic |
| TGCTTCCTGGTATGGTTGAT+GGG | 0.462235 | 4.4:+33184905 | MS.gene052372:CDS |
| TCTTCAGCATCTCCAACAAC+AGG | 0.463831 | 4.4:-33190446 | None:intergenic |
| ATTCCATCTCGCTGCTCAGC+AGG | 0.463951 | 4.4:-33181347 | None:intergenic |
| TCGATAGGGGCAATCAGCCC+TGG | 0.464759 | 4.4:-33191628 | None:intergenic |
| ATTTGTGTTAGGCGGCAGTA+TGG | 0.464788 | 4.4:-33183572 | None:intergenic |
| TATCGAGTTGCAAGATGAAA+TGG | 0.464848 | 4.4:+33191645 | MS.gene052372:CDS |
| ATCTCGCTGCTCAGCAGGTA+AGG | 0.467890 | 4.4:-33181342 | None:intergenic |
| GCCACCGTCGCCGCCTTCTA+CGG | 0.469747 | 4.4:+33179894 | MS.gene052372:CDS |
| TTTATGCATGAGACACATCC+TGG | 0.470454 | 4.4:+33186789 | MS.gene052372:CDS |
| AACAGGCCTGAACCTGTTGT+TGG | 0.470757 | 4.4:+33190434 | MS.gene052372:CDS |
| CCAATGATGGATCCTGTTCT+GGG | 0.470966 | 4.4:+33189427 | MS.gene052372:CDS |
| CCCAGAACAGGATCCATCAT+TGG | 0.482264 | 4.4:-33189427 | None:intergenic |
| CAACCTTTCCGTTCGAAATG+AGG | 0.482971 | 4.4:-33181535 | None:intergenic |
| GCTGAAGATCAACCACAGAT+TGG | 0.484039 | 4.4:+33189388 | MS.gene052372:CDS |
| ATTTCATCTTGCAACTCGAT+AGG | 0.485254 | 4.4:-33191643 | None:intergenic |
| GCAAGCAAAAGACCTGATTT+GGG | 0.487434 | 4.4:-33188244 | None:intergenic |
| CATTGTCCTTCAAGGTTTCA+CGG | 0.489746 | 4.4:-33185059 | None:intergenic |
| GCAGGTTCACATCCGCATCC+TGG | 0.490283 | 4.4:+33183984 | MS.gene052372:intron |
| TTTGGACTACTGGAATTCCT+TGG | 0.490547 | 4.4:+33184186 | MS.gene052372:CDS |
| GCCTCGGGGATATTTGTGTT+AGG | 0.490648 | 4.4:-33183583 | None:intergenic |
| AAGGCATACAGATTCGTAGA+AGG | 0.492583 | 4.4:-33188049 | None:intergenic |
| AGTTCTGTAATCAGTTCTAC+AGG | 0.497293 | 4.4:+33190701 | MS.gene052372:CDS |
| GCAGCTTCTGCGAACTTGAT+GGG | 0.497457 | 4.4:+33184250 | MS.gene052372:CDS |
| TGGGTTCAAATTACATGTCC+TGG | 0.499157 | 4.4:+33190786 | MS.gene052372:CDS |
| AGCGTAAGATTTCGATATGC+TGG | 0.500147 | 4.4:-33183262 | None:intergenic |
| CATCTTATGTGAAACTTCTA+CGG | 0.502876 | 4.4:+33189236 | MS.gene052372:CDS |
| TCGCTTGATAGGTATGTTGT+TGG | 0.504977 | 4.4:+33186699 | MS.gene052372:intron |
| TCATAGTTGAAGATGAAAAT+GGG | 0.505293 | 4.4:+33185028 | MS.gene052372:CDS |
| TATCAGGAAATCTCGTATAT+GGG | 0.506963 | 4.4:-33191187 | None:intergenic |
| AACAACTCAGTGGTGAGGAT+TGG | 0.507258 | 4.4:+33185713 | MS.gene052372:CDS |
| AAATGCTGATAAGATATTCA+AGG | 0.507542 | 4.4:-33184044 | None:intergenic |
| CAACGTCGTCAGCTTTATGC+TGG | 0.507554 | 4.4:+33184946 | MS.gene052372:CDS |
| AGATCATTGTGATTTGAGGC+AGG | 0.510406 | 4.4:-33189000 | None:intergenic |
| AGTTGTTATATTCTCTTGAG+TGG | 0.513869 | 4.4:-33184010 | None:intergenic |
| CCTGGTATGGTTGATGGGCA+CGG | 0.514902 | 4.4:+33184910 | MS.gene052372:CDS |
| CCATGATGATACTGAAAAGC+AGG | 0.516021 | 4.4:+33185310 | MS.gene052372:CDS |
| TGGACATGTTGAATGTGTAC+AGG | 0.517694 | 4.4:+33189026 | MS.gene052372:CDS |
| GTCGCCGCCTTCTACGGCAC+TGG | 0.520083 | 4.4:+33179900 | MS.gene052372:CDS |
| ATGAGGTGAAGAACAGCGCC+AGG | 0.521707 | 4.4:-33183732 | None:intergenic |
| CTGAGCTTCTCAGCGGCCAT+CGG | 0.521732 | 4.4:-33179834 | None:intergenic |
| ATCAAGTTCGCAGAAGCTGC+AGG | 0.523514 | 4.4:-33184247 | None:intergenic |
| TGTGCTATCGGCATCCCAAA+GGG | 0.529449 | 4.4:+33183043 | MS.gene052372:CDS |
| CAAAGATCTCTATGCTGAAG+AGG | 0.531854 | 4.4:+33191561 | MS.gene052372:CDS |
| GCCGTAGAAGGCGGCGACGG+TGG | 0.532551 | 4.4:-33179895 | None:intergenic |
| TATTGTCCGTGAAACCTTGA+AGG | 0.534873 | 4.4:+33185053 | MS.gene052372:CDS |
| TGGTTCCATGATAGAAGAGC+AGG | 0.535654 | 4.4:+33185783 | MS.gene052372:CDS |
| CAAGGGGATCCATGATAAGA+AGG | 0.538201 | 4.4:-33183102 | None:intergenic |
| GAAGAGAGAAGAACTTAAGC+CGG | 0.538221 | 4.4:-33190155 | None:intergenic |
| ACTTGTAGCAACATCCCAAA+GGG | 0.539515 | 4.4:-33190943 | None:intergenic |
| GATAGAAGTTCAGATACAAA+TGG | 0.542603 | 4.4:-33187979 | None:intergenic |
| GACTTGTAGCAACATCCCAA+AGG | 0.543415 | 4.4:-33190944 | None:intergenic |
| TTAGGCATTTATACAGAACC+TGG | 0.546070 | 4.4:+33183714 | MS.gene052372:intron |
| AGCATTCTCAACTTTGACAT+GGG | 0.546626 | 4.4:-33184970 | None:intergenic |
| GGGCATTTCGGCACACAGAA+AGG | 0.547271 | 4.4:+33190400 | MS.gene052372:CDS |
| CAATTTGAATACACTCTGCT+GGG | 0.548023 | 4.4:+33185744 | MS.gene052372:CDS |
| CCGTGCCCATCAACCATACC+AGG | 0.548181 | 4.4:-33184910 | None:intergenic |
| ATGGATGGAAATTATAGGCC+AGG | 0.548256 | 4.4:+33188384 | MS.gene052372:CDS |
| CTAGGAATGCTCCTGATGCA+AGG | 0.552257 | 4.4:+33189458 | MS.gene052372:CDS |
| AAGATGTATGGTATATTCAT+GGG | 0.555548 | 4.4:+33183419 | MS.gene052372:CDS |
| TTACCTGCTGAGCAGCGAGA+TGG | 0.559129 | 4.4:+33181344 | MS.gene052372:CDS |
| TCGATGCAGTTCGGTTAAGA+GGG | 0.559242 | 4.4:+33189330 | MS.gene052372:intron |
| TTGAAGATTACCCTGAGCAC+CGG | 0.559648 | 4.4:+33190136 | MS.gene052372:CDS |
| GTGCAATATGTCAAGATGTA+TGG | 0.559915 | 4.4:+33183407 | MS.gene052372:CDS |
| CTGTTCTGGGAGATTATGCT+AGG | 0.561609 | 4.4:+33189440 | MS.gene052372:CDS |
| TGCAAAACAATCCTGATATG+TGG | 0.562075 | 4.4:+33180283 | MS.gene052372:CDS |
| CTACTGGAATTCCTTGGTGT+CGG | 0.563467 | 4.4:+33184192 | MS.gene052372:CDS |
| CTTGACAAACAGATCAGTGC+AGG | 0.563746 | 4.4:-33190204 | None:intergenic |
| CCCAGGCTTATGAAAAGTAT+CGG | 0.564406 | 4.4:-33190767 | None:intergenic |
| TCGAGTAACGGAACATCGAT+CGG | 0.565699 | 4.4:-33179870 | None:intergenic |
| AGGAAAACAATGAGTAGCTA+TGG | 0.566018 | 4.4:-33190184 | None:intergenic |
| GATCTGCAATAGTGATTGGA+AGG | 0.567155 | 4.4:-33188005 | None:intergenic |
| GCGACGGTGGCGTCGAGTAA+CGG | 0.567435 | 4.4:-33179882 | None:intergenic |
| TTCATCTTGCAACTCGATAG+GGG | 0.569366 | 4.4:-33191641 | None:intergenic |
| AAAGAATGCTTTCTATTCCA+GGG | 0.571488 | 4.4:+33191611 | MS.gene052372:CDS |
| CTTGAGTGGATTCCAGGATG+CGG | 0.572251 | 4.4:-33183996 | None:intergenic |
| TTATATATTTGAATCACCGT+TGG | 0.573963 | 4.4:+33183127 | MS.gene052372:CDS |
| GTTATGCTTATATGTGCTAT+CGG | 0.574920 | 4.4:+33183031 | MS.gene052372:CDS |
| AGAACTTAAGCCGGTGCTCA+GGG | 0.577552 | 4.4:-33190146 | None:intergenic |
| AGCATGAGTGGCCAGCAAGA+TGG | 0.577675 | 4.4:+33181751 | MS.gene052372:CDS |
| GTAGAAGGAGTGTATCTGAT+GGG | 0.578468 | 4.4:-33188034 | None:intergenic |
| ATTGCCATGTGCATATGCCT+CGG | 0.578592 | 4.4:-33183599 | None:intergenic |
| TCTCTATGCTGAAGAGGCTG+CGG | 0.580599 | 4.4:+33191567 | MS.gene052372:CDS |
| TCCTGATGCAAGGGAATCTG+AGG | 0.583164 | 4.4:+33189468 | MS.gene052372:CDS |
| TTGTTATGGATTCAATCATG+TGG | 0.583890 | 4.4:+33190379 | MS.gene052372:CDS |
| ATGTGCTATCGGCATCCCAA+AGG | 0.587524 | 4.4:+33183042 | MS.gene052372:CDS |
| AAAACAAATGCTGAAGCACC+AGG | 0.588693 | 4.4:-33190804 | None:intergenic |
| CGTAGAAGGAGTGTATCTGA+TGG | 0.588720 | 4.4:-33188035 | None:intergenic |
| TGATTCAAATATATAACCCA+AGG | 0.590786 | 4.4:-33183120 | None:intergenic |
| CGTGTAATCTGCAGATGCTG+AGG | 0.591084 | 4.4:+33185680 | MS.gene052372:intron |
| AAGCATTCTCAACTTTGACA+TGG | 0.596752 | 4.4:-33184971 | None:intergenic |
| AGGCCTCATTTCGAACGGAA+AGG | 0.600634 | 4.4:+33181532 | MS.gene052372:CDS |
| TAGGAATGCTCCTGATGCAA+GGG | 0.607736 | 4.4:+33189459 | MS.gene052372:CDS |
| TGTTATGGATTCAATCATGT+GGG | 0.609757 | 4.4:+33190380 | MS.gene052372:CDS |
| AGTGCCGTAGAAGGCGGCGA+CGG | 0.612587 | 4.4:-33179898 | None:intergenic |
| GTTTACTTGACAGATTATGA+GGG | 0.612625 | 4.4:+33185259 | MS.gene052372:intron |
| TCGGGGATATTTGTGTTAGG+CGG | 0.615711 | 4.4:-33183580 | None:intergenic |
| CGGCTCAGAGAGAAAGAGAA+CGG | 0.616816 | 4.4:+33191587 | MS.gene052372:CDS |
| GATTCAAATATATAACCCAA+GGG | 0.617377 | 4.4:-33183119 | None:intergenic |
| GGCATGCAATGTAGATAGTG+TGG | 0.618242 | 4.4:-33183081 | None:intergenic |
| GATTTCGATATGCTGGAACT+GGG | 0.620969 | 4.4:-33183255 | None:intergenic |
| ATCCCCGAGGCATATGCACA+TGG | 0.622830 | 4.4:+33183595 | MS.gene052372:CDS |
| AATCTATGTGAAATCACGAA+GGG | 0.623585 | 4.4:+33186566 | MS.gene052372:CDS |
| AACAATGAGTAGCTATGGCG+CGG | 0.631317 | 4.4:-33190179 | None:intergenic |
| AGAGAGATGAATTTCTTCAG+CGG | 0.635384 | 4.4:+33188210 | MS.gene052372:CDS |
| AATGCTTATGATCTGTCGAA+TGG | 0.640679 | 4.4:+33184987 | MS.gene052372:CDS |
| AGATCCAGTGCCGTAGAAGG+CGG | 0.642341 | 4.4:-33179904 | None:intergenic |
| AAGTAAACAACTCAGTGGTG+AGG | 0.642832 | 4.4:+33185708 | MS.gene052372:CDS |
| TAATACCTGAACAATGATGT+CGG | 0.643354 | 4.4:-33181384 | None:intergenic |
| CAACGAGGCCTCATTTCGAA+CGG | 0.643519 | 4.4:+33181527 | MS.gene052372:CDS |
| TATTCCTGATCTTGTCGCAG+CGG | 0.643593 | 4.4:+33181782 | MS.gene052372:CDS |
| AGAACAGGATCCATCATTGG+TGG | 0.644463 | 4.4:-33189424 | None:intergenic |
| TCCGAACATGACAACAGCTG+AGG | 0.645401 | 4.4:+33191034 | MS.gene052372:CDS |
| TCGAATGGCTAAACCCGAAG+AGG | 0.647046 | 4.4:+33185002 | MS.gene052372:CDS |
| AGGACATGTAATTTGAACCC+AGG | 0.648020 | 4.4:-33190784 | None:intergenic |
| GCATTACTTGGGTATGACTG+TGG | 0.648596 | 4.4:-33190966 | None:intergenic |
| CGGCACTGGATCTAAGCAAG+AGG | 0.649693 | 4.4:+33179914 | MS.gene052372:CDS |
| TCAGTGGTGAGGATTGGACC+TGG | 0.651890 | 4.4:+33185719 | MS.gene052372:CDS |
| CTCAAACAGCTCCGACACCA+AGG | 0.652968 | 4.4:-33184203 | None:intergenic |
| AAATCTATGTGAAATCACGA+AGG | 0.654119 | 4.4:+33186565 | MS.gene052372:CDS |
| CGAGTTGCAAGATGAAATGG+TGG | 0.657463 | 4.4:+33191648 | MS.gene052372:CDS |
| TAGAAGGAGTGTATCTGATG+GGG | 0.661038 | 4.4:-33188033 | None:intergenic |
| TACGCTGCAATGTTTAACAG+AGG | 0.663731 | 4.4:+33183279 | MS.gene052372:CDS |
| TGCATAGCTTTCTAGCAACG+AGG | 0.670460 | 4.4:+33181512 | MS.gene052372:intron |
| TGCCATGTGCATATGCCTCG+GGG | 0.678438 | 4.4:-33183597 | None:intergenic |
| AACGATCTGTGAGAATTGCA+TGG | 0.684162 | 4.4:+33181818 | MS.gene052372:CDS |
| GCGTAAGTTTGTGATCACCC+AGG | 0.698935 | 4.4:+33187854 | MS.gene052372:CDS |
| GGATTATCCAAACTTCGATG+TGG | 0.699508 | 4.4:-33184226 | None:intergenic |
| ATTCAAATATATAACCCAAG+GGG | 0.700367 | 4.4:-33183118 | None:intergenic |
| AAAACGGCTTCAAATATGCG+AGG | 0.702127 | 4.4:-33189713 | None:intergenic |
| AAATTAAGTAAACAACTCAG+TGG | 0.731890 | 4.4:+33185703 | MS.gene052372:CDS |
| CTTGTAGCAACATCCCAAAG+GGG | 0.739875 | 4.4:-33190942 | None:intergenic |
| GCCTAACACAAATATCCCCG+AGG | 0.742982 | 4.4:+33183582 | MS.gene052372:CDS |
| CAAATCTCTGAGCTTCTCAG+CGG | 0.769266 | 4.4:-33179841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 33179837 | 33191678 | 33179837 | ID=MS.gene052372 |
| chr4.4 | mRNA | 33179837 | 33191678 | 33179837 | ID=MS.gene052372.t1;Parent=MS.gene052372 |
| chr4.4 | exon | 33179837 | 33179935 | 33179837 | ID=MS.gene052372.t1.exon1;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33179837 | 33179935 | 33179837 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33180252 | 33180368 | 33180252 | ID=MS.gene052372.t1.exon2;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33180252 | 33180368 | 33180252 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33181308 | 33181400 | 33181308 | ID=MS.gene052372.t1.exon3;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33181308 | 33181400 | 33181308 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33181519 | 33181590 | 33181519 | ID=MS.gene052372.t1.exon4;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33181519 | 33181590 | 33181519 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33181744 | 33181851 | 33181744 | ID=MS.gene052372.t1.exon5;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33181744 | 33181851 | 33181744 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33181923 | 33182005 | 33181923 | ID=MS.gene052372.t1.exon6;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33181923 | 33182005 | 33181923 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33183010 | 33183148 | 33183010 | ID=MS.gene052372.t1.exon7;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33183010 | 33183148 | 33183010 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33183232 | 33183300 | 33183232 | ID=MS.gene052372.t1.exon8;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33183232 | 33183300 | 33183232 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33183374 | 33183451 | 33183374 | ID=MS.gene052372.t1.exon9;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33183374 | 33183451 | 33183374 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33183571 | 33183633 | 33183571 | ID=MS.gene052372.t1.exon10;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33183571 | 33183633 | 33183571 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33183718 | 33183762 | 33183718 | ID=MS.gene052372.t1.exon11;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33183718 | 33183762 | 33183718 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33183988 | 33184095 | 33183988 | ID=MS.gene052372.t1.exon12;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33183988 | 33184095 | 33183988 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33184181 | 33184279 | 33184181 | ID=MS.gene052372.t1.exon13;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33184181 | 33184279 | 33184181 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33184895 | 33185101 | 33184895 | ID=MS.gene052372.t1.exon14;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33184895 | 33185101 | 33184895 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33185272 | 33185331 | 33185272 | ID=MS.gene052372.t1.exon15;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33185272 | 33185331 | 33185272 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33185694 | 33185804 | 33185694 | ID=MS.gene052372.t1.exon16;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33185694 | 33185804 | 33185694 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33186527 | 33186624 | 33186527 | ID=MS.gene052372.t1.exon17;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33186527 | 33186624 | 33186527 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33186710 | 33186818 | 33186710 | ID=MS.gene052372.t1.exon18;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33186710 | 33186818 | 33186710 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33187810 | 33187875 | 33187810 | ID=MS.gene052372.t1.exon19;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33187810 | 33187875 | 33187810 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33187964 | 33188062 | 33187964 | ID=MS.gene052372.t1.exon20;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33187964 | 33188062 | 33187964 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33188173 | 33188253 | 33188173 | ID=MS.gene052372.t1.exon21;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33188173 | 33188253 | 33188173 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33188382 | 33188471 | 33188382 | ID=MS.gene052372.t1.exon22;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33188382 | 33188471 | 33188382 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33188962 | 33189047 | 33188962 | ID=MS.gene052372.t1.exon23;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33188962 | 33189047 | 33188962 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33189177 | 33189257 | 33189177 | ID=MS.gene052372.t1.exon24;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33189177 | 33189257 | 33189177 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33189339 | 33189521 | 33189339 | ID=MS.gene052372.t1.exon25;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33189339 | 33189521 | 33189339 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33189685 | 33189751 | 33189685 | ID=MS.gene052372.t1.exon26;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33189685 | 33189751 | 33189685 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33190120 | 33190230 | 33190120 | ID=MS.gene052372.t1.exon27;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33190120 | 33190230 | 33190120 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33190369 | 33190476 | 33190369 | ID=MS.gene052372.t1.exon28;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33190369 | 33190476 | 33190369 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33190694 | 33190831 | 33190694 | ID=MS.gene052372.t1.exon29;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33190694 | 33190831 | 33190694 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33190918 | 33191055 | 33190918 | ID=MS.gene052372.t1.exon30;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33190918 | 33191055 | 33190918 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33191129 | 33191233 | 33191129 | ID=MS.gene052372.t1.exon31;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33191129 | 33191233 | 33191129 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| chr4.4 | exon | 33191556 | 33191678 | 33191556 | ID=MS.gene052372.t1.exon32;Parent=MS.gene052372.t1 |
| chr4.4 | CDS | 33191556 | 33191678 | 33191556 | ID=cds.MS.gene052372.t1;Parent=MS.gene052372.t1 |
| Gene Sequence |
| Protein sequence |
