AlfalfaGEDB | MS.gene064484

M. sativa cultivar XinJiangDaYe / MS.gene064484

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064484.t1	KEH42211.1	95.6	427	5	1	1	413	10	436	4.90E-231	810.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064484.t1	Q9SF86	64.4	433	119	8	1	413	1	418	3.7e-147	522.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064484.t1	A0A072VKQ3	95.6	427	5	1	1	413	10	436	3.5e-231	810.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007411	MS.gene064484	PPI
MS.gene007535	MS.gene064484	PPI
MS.gene010581	MS.gene064484	PPI
MS.gene016020	MS.gene064484	PPI
MS.gene020660	MS.gene064484	PPI
MS.gene029810	MS.gene064484	PPI
MS.gene030881	MS.gene064484	PPI
MS.gene055900	MS.gene064484	PPI
MS.gene060919	MS.gene064484	PPI
MS.gene064484	MS.gene058907	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064484.t1	MTR_1g063910	95.550	427	5	1	1	413	10	436	0.0	835
MS.gene064484.t1	MTR_1g063910	95.550	427	5	1	1	413	1	427	0.0	835
MS.gene064484.t1	MTR_7g101800	76.977	430	77	7	1	412	21	446	0.0	658
MS.gene064484.t1	MTR_7g101800	76.977	430	77	7	1	412	1	426	0.0	658
MS.gene064484.t1	MTR_7g101800	76.977	430	77	7	1	412	9	434	0.0	658
MS.gene064484.t1	MTR_4g063950	56.334	371	142	6	38	397	46	407	2.76e-142	413
MS.gene064484.t1	MTR_8g008820	52.809	356	149	3	69	409	56	407	2.15e-127	375
MS.gene064484.t1	MTR_4g099130	52.716	313	134	1	69	367	49	361	4.16e-116	344
MS.gene064484.t1	MTR_5g013610	52.427	309	132	2	69	363	44	351	1.18e-111	332
MS.gene064484.t1	MTR_8g469230	54.785	303	114	4	72	356	115	412	5.14e-106	322

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064484.t1	AT3G09830	64.352	432	121	7	1	413	1	418	0.0	541
MS.gene064484.t1	AT3G09830	64.352	432	121	7	1	413	1	418	0.0	541
MS.gene064484.t1	AT3G09830	64.352	432	121	7	1	413	1	418	0.0	541
MS.gene064484.t1	AT5G03320	62.181	431	134	8	1	413	1	420	0.0	515
MS.gene064484.t1	AT5G03320	62.181	431	134	8	1	413	1	420	0.0	515
MS.gene064484.t1	AT2G39110	62.730	381	107	7	1	363	16	379	5.72e-150	432
MS.gene064484.t1	AT2G39110	62.730	381	107	7	1	363	1	364	1.06e-149	431
MS.gene064484.t1	AT2G28940	53.571	420	136	11	51	412	43	461	1.97e-143	417
MS.gene064484.t1	AT2G28940	59.091	308	104	6	126	412	36	342	3.04e-124	363
MS.gene064484.t1	AT5G47070	50.909	330	142	4	68	382	65	389	2.81e-110	330

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Find 116 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCTCTCCCATGGAGT+AGG	0.574924	1.4:-52451607	MS.gene064484:CDS
AAAGGGTGAGCAGCAGCTGT+TGG	0.530444	1.4:-52450505	MS.gene064484:CDS
AACAGCTGCTGCTCACCCTT+TGG	0.268372	1.4:+52450507	None:intergenic
AACATATCTCCACGAGGAAA+TGG	0.414355	1.4:-52451549	MS.gene064484:CDS
AACCAATTACAATCTGGTTT+TGG	0.277102	1.4:+52450195	None:intergenic
AACCAGATTGTAATTGGTTT+AGG	0.318885	1.4:-52450191	MS.gene064484:CDS
AACCTAAACCAATTACAATC+TGG	0.412422	1.4:+52450189	None:intergenic
AACTAACAAGAAGAGAATCA+TGG	0.540225	1.4:-52450220	MS.gene064484:CDS
AAGAGGAATCCAACGGCTTT+TGG	0.308941	1.4:-52451684	MS.gene064484:CDS
AAGATTGATGTATGGAGTTA+CGG	0.452417	1.4:-52450582	MS.gene064484:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAGCCACCAAAAATTT+CGG	-	chr1.4:52450404-52450423	MS.gene064484:CDS	30.0%
AACCTAAACCAATTACAATC+TGG	+	chr1.4:52453082-52453101	None:intergenic	30.0%
AACTAACAAGAAGAGAATCA+TGG	-	chr1.4:52453048-52453067	MS.gene064484:CDS	30.0%
AAGATTGATGTATGGAGTTA+CGG	-	chr1.4:52452686-52452705	MS.gene064484:intron	30.0%
AAGCATAACTTTCCTATTCA+AGG	-	chr1.4:52451761-52451780	MS.gene064484:intron	30.0%
ACGTCCTGTTTGAATATATT+CGG	+	chr1.4:52452657-52452676	None:intergenic	30.0%
AGAATAGAAACCTGAATCTA+AGG	-	chr1.4:52452136-52452155	MS.gene064484:intron	30.0%
ATAGTATTTGTTTGGTCCTA+CGG	+	chr1.4:52450987-52451006	None:intergenic	30.0%
CAAATCTTCAAATATCCTTC+TGG	-	chr1.4:52451939-52451958	MS.gene064484:intron	30.0%
CTAATACTTCACTCATCTTA+GGG	+	chr1.4:52452931-52452950	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	52450158	52453132	52450158	ID=MS.gene064484
chr1.4	mRNA	52450158	52453132	52450158	ID=MS.gene064484.t1;Parent=MS.gene064484
chr1.4	exon	52452757	52453132	52452757	ID=MS.gene064484.t1.exon1;Parent=MS.gene064484.t1
chr1.4	CDS	52452757	52453132	52452757	ID=cds.MS.gene064484.t1;Parent=MS.gene064484.t1
chr1.4	exon	52451541	52451776	52451541	ID=MS.gene064484.t1.exon2;Parent=MS.gene064484.t1
chr1.4	CDS	52451541	52451776	52451541	ID=cds.MS.gene064484.t1;Parent=MS.gene064484.t1
chr1.4	exon	52451246	52451368	52451246	ID=MS.gene064484.t1.exon3;Parent=MS.gene064484.t1
chr1.4	CDS	52451246	52451368	52451246	ID=cds.MS.gene064484.t1;Parent=MS.gene064484.t1
chr1.4	exon	52450158	52450664	52450158	ID=MS.gene064484.t1.exon4;Parent=MS.gene064484.t1
chr1.4	CDS	52450158	52450664	52450158	ID=cds.MS.gene064484.t1;Parent=MS.gene064484.t1

Gene Sequence

>MS.gene064484

ATGAATTGTTTTCCATTCAACATCATCTATGGAGACAAGAAGGGTGATGCTAAAGGCTTGCAAATGCAATCACTCTCGGGTCTATCGAACAACTCTACTTATGGCGGGAGTGACATGAGAAGAACTGGTTCTGAATTGAATTCTCTGGATGCTTCCGACAACAGTTCCGACTCCCTTAGGAGGAATGCATTTCCCAATTTGTCCCAAAGACCTAGCAACCTGAGAGTATTTACTGTATCTGAACTGAAATCAGCCACCAAAAATTTCGGTCGCTCTGTTATGCTTGGCGAGGGTGGATTCGGGTGTGTCTACAAGGGTTTGATCAAGAGTGTAGATGATCCTGCTAAAAAAATTGAAATTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGCAAGGTTTTGCTCTTTATATTTCGTACTGAAAGTTATACAAGCTTATTTGCTTCTGTAATGTTGATAGGTAATAGGTATCTTGTGAAAGTATAATATCGACAAAATGCTCTCACGCAGTGTCTAGTTATATGACTCTACTGTGTTTAAGTATCATAAAGGAAGCTATAATAAGTGTAATGTTATAAAGCTTAAGTGCATGTACTTTCAAGAGAGCCAAAAGTACTTTGAAGACTTAAAATTGATTTTTGTATGTTGGTGAATTCTCGATTAGAATTGATATTGCCTATTTAACTGATTCTAATGTGAAGTTAGGATTTGAAGCTTTTATCTGAAATTGTAATTTTCACACTCAAATTTATTGTTCAACTCACTGCATAAATAATTTTACCTTAAACACGCTTTTAAGTTTTAACTAAAATCTATTTCCATGACCGTAGGACCAAACAAATACTATTTGAATTGTAACACAGGTTACTTCAAGTAGAGACTTTACCACACTTCAATTTTATATTTTAATTTGCAAACCTTACTCAACCTTCGAAAGATTTTTGTAAAATATGATGGCACAATTGCTACACCAGATAGGAATAACCTTTGAGTACTTTTTCTACTGCATTTCACTCTGTGTGACTGTGTGTTACTTAGGGTTTCTTTAGATTGACTTATTTGAGCTTATCTACTAATATAAGCACTTGTGAGACTGTTTGCGTTAATTTGTGAAAACAACTTATGACATGTCCATGAGCCTTTTTTCGCTTATTTTCATTAGCTCTCCAATATAGCTTATAGCTTAGATGAAAACAGTTTGACTTTATTTTATCTGTTGCTATAAAATAGCTTATAGATAAGCAGTTATATATAAGCACTTATTCTATAAGCGCTTAATTAAATTGTTTATCCAAACGAGACTTTAATTTCTTTCCTTTCGGCTTATAGGGGCATAAGGAATGGGTGACTGAAGTGAATGTTCTTGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTTGGCTATTGTGCTGATGATGATGAAAGAGGAATCCAACGGCTTTTGGTATATGAATATATGCCCAACAGAAGCTTGGAACACCATTTATCCCCGCGATCAGAAACTCCTCTCCCATGGAGTAGGAGACTAAAAATAGCCCAAGATGCTGCTCGCGGCTTAACATATCTCCACGAGGAAATGGATTTTCAGGTATAACTTATAAGCATAACTTTCCTATTCAAGGATAAAAAGGCTGTGTAGAAACTCCCCCCCTAAAGGAAGCTAGGAGAAGCTAAATTGAACATTTTAAAAGTAATTTAGTTGGATATAAAATGCTGTGCAGCCTGATATTGCTGTACTAACTGTTTGTGGGGGTATTTAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTTGGATTAGCAAGATTGGGACCATCTGACGGGTTAACTCATGTCTCAACAGCGGTATGGCCATTTCTTTTCATCTCTGATTTCATATATTAATCCACTATTTTCATATATGAAGATGTGATTAGCAAGAGAGTAATTTGGTATGAGAATAGAAACCTGAATCTAAGGGTATGTTTGAATGGAGGATTTTGGAAGGGATAACTTATTTTGTTTTCGAAATTAAGGAAAGTATAAAATGTTTCTAAACATAAATTAAGTGTATTTGAGATGTCATATGATCATCTATCATGTTATTGTTATTCTATCAACTTTTTTAGCATATCAAATATATTCACAAATATGGACTTAGCCCTCCAAAACCCTCCTTCCAAACGTACATTAAATATAGACTAGTCTATCATGTGTTAAAAAAAGAATTCATTTACCGTGCCATAAAAGAATACTTAAACTATGCGTATATATTTTGTTTGACTACTGTTATTTTAACATGTCTTATTTAATGGTTAAATTACACTTCGATAGGCAAAGCATACATCATAGTACCCCTAATATAGTTATCAACCATTTATAGATGGAATCCAGTGAATCAACACACAATTAATGTTCATAAGACTGGTGTATAATGTATTCATCAGGTTGTAGGAACAATGGGGTATGCTGCTCCCGAATATATTCAAACAGGACGTCTCACTTCAAAGATTGATGTATGGAGTTACGGTGTCTTCCTCTATGAACTCATTACCGGCAGGCGTCCTTTAGATCGAAATCGCCCAAAGGGTGAGCAGCAGCTGTTGGAATGGATAAGGCCATACCTTTCAGATGTGAAGAAGTTTCAAATAATTTTGGATCCAAGACTCGAGAGGAAACACCTCTTAAAGTCAGCCCAAAAACTTGCTATCGTAGCTAACCGATGCCTGGTTAGAAACCCAAAGAATCGCCCTAAGATGAGTGAAGTATTAGAAATGGTTGATCGGATTGTGGAGTCTTCGGTGAGTACTAATCAACAACCACCCTTGAATAGTGTAGCCTCAGCCGATGATTCTCAGGACACTGAAATAACTAACAAGAAGAGAATCATGGAGCCAAAACCAGATTGTAATTGGTTTAGGTTGTGGAGACCAAAGCTTTTAAGAACATGCTGA

Protein sequence

>MS.gene064484.t1

MNCFPFNIIYGDKKGDAKGLQMQSLSGLSNNSTYGGSDMRRTGSELNSLDASDNSSDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSVDDPAKKIEIAVKQLVNVLGIVEHPNLVKLVGYCADDDERGIQRLLVYEYMPNRSLEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKIDVWSYGVFLYELITGRRPLDRNRPKGEQQLLEWIRPYLSDVKKFQIILDPRLERKHLLKSAQKLAIVANRCLVRNPKNRPKMSEVLEMVDRIVESSVSTNQQPPLNSVASADDSQDTEITNKKRIMEPKPDCNWFRLWRPKLLRTC