AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030881

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030881.t1 MTR_8g089650 98.178 439 6 2 1 437 1 439 0.0 877
MS.gene030881.t1 MTR_4g104410 54.335 346 136 10 88 426 33 363 7.22e-115 341
MS.gene030881.t1 MTR_5g035980 46.959 411 156 14 67 428 48 445 1.35e-106 323
MS.gene030881.t1 MTR_4g106480 45.455 396 181 12 51 428 20 398 7.85e-103 312
MS.gene030881.t1 MTR_3g078380 46.173 392 178 13 60 428 30 411 2.13e-101 308
MS.gene030881.t1 MTR_1g021590 42.687 335 172 9 99 427 112 432 4.34e-80 255
MS.gene030881.t1 MTR_2g060070 39.710 345 190 8 82 424 51 379 1.55e-76 244
MS.gene030881.t1 MTR_5g018520 40.541 333 180 7 99 426 100 419 3.69e-76 245
MS.gene030881.t1 MTR_4g068457 37.883 359 204 7 79 427 108 457 9.35e-74 240
MS.gene030881.t1 MTR_2g101410 33.062 369 205 11 77 428 66 409 1.20e-58 198
MS.gene030881.t1 MTR_3g110185 36.441 354 195 12 85 428 78 411 4.66e-54 193
MS.gene030881.t1 MTR_3g110185 26.275 255 149 8 209 439 87 326 7.65e-12 67.8
MS.gene030881.t1 MTR_4g071130 24.290 317 169 11 78 366 2 275 2.58e-13 72.8
MS.gene030881.t1 MTR_6g465150 26.316 228 117 6 230 424 129 338 6.86e-13 70.5
MS.gene030881.t1 MTR_1g090827 24.606 317 168 11 78 366 2 275 7.83e-13 71.2
MS.gene030881.t1 MTR_3g088545 23.618 199 97 3 218 367 95 287 1.16e-12 69.3
MS.gene030881.t1 MTR_8g028700 27.354 223 126 9 209 424 230 423 1.34e-12 70.1
MS.gene030881.t1 MTR_2g102267 25.260 289 163 11 160 431 41 293 2.42e-12 68.2
MS.gene030881.t1 MTR_4g105700 27.074 229 134 10 222 429 419 635 1.21e-11 67.4
MS.gene030881.t1 MTR_1g072140 27.660 235 141 9 200 429 18 228 1.88e-11 65.5
MS.gene030881.t1 MTR_4g123597 25.857 321 186 12 73 374 414 701 2.35e-11 66.6
MS.gene030881.t1 MTR_4g069090 31.250 160 95 5 209 367 109 254 7.54e-11 64.7
MS.gene030881.t1 MTR_8g104010 27.523 218 132 7 209 425 912 1104 9.62e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030881.t1 AT1G24530 64.130 368 118 4 62 428 51 405 5.50e-168 478
MS.gene030881.t1 AT1G24130 46.053 380 175 12 67 428 45 412 2.28e-100 306
MS.gene030881.t1 AT5G50120 42.391 368 180 11 85 428 27 386 7.21e-91 281
MS.gene030881.t1 AT2G26490 41.493 335 176 9 99 427 99 419 1.00e-78 252
MS.gene030881.t1 AT1G49450 40.708 339 183 7 99 427 137 467 8.56e-76 244
MS.gene030881.t1 AT3G51930 38.292 363 182 11 84 424 50 392 2.53e-74 239
MS.gene030881.t1 AT3G50390 39.645 338 182 8 99 427 101 425 5.75e-74 239
MS.gene030881.t1 AT3G18950 38.393 336 189 8 99 427 141 465 8.14e-71 231
MS.gene030881.t1 AT4G34380 37.389 337 196 7 99 427 128 457 1.34e-65 218
MS.gene030881.t1 AT1G47610 39.763 337 179 12 99 426 27 348 1.52e-65 214
MS.gene030881.t1 AT1G21651 31.707 164 100 5 209 366 523 680 1.95e-14 76.3
MS.gene030881.t1 AT1G21650 31.707 164 100 5 209 366 523 680 2.80e-14 75.9
MS.gene030881.t1 AT1G49040 28.899 218 129 7 209 425 898 1090 1.35e-13 73.6
MS.gene030881.t1 AT4G02730 29.534 193 108 9 241 429 34 202 1.21e-12 69.3
MS.gene030881.t1 AT3G49660 26.316 209 125 7 222 424 127 312 2.85e-12 67.8
MS.gene030881.t1 AT1G62020 23.975 317 170 10 78 366 2 275 5.45e-12 68.6
MS.gene030881.t1 AT5G25150 33.103 145 86 5 225 366 477 613 1.19e-11 67.4
MS.gene030881.t1 AT5G25150 33.103 145 86 5 225 366 477 613 1.41e-11 67.0
MS.gene030881.t1 AT3G21540 30.872 149 92 5 229 374 561 701 2.43e-11 66.6
MS.gene030881.t1 AT3G05090 29.412 204 94 9 209 366 83 282 3.39e-11 65.9
MS.gene030881.t1 AT3G05090 29.412 204 94 9 209 366 83 282 3.39e-11 65.9
MS.gene030881.t1 AT3G05090 29.412 204 94 9 209 366 83 282 3.39e-11 65.9
MS.gene030881.t1 AT5G16750 25.751 233 137 10 219 438 415 624 4.31e-11 65.9
MS.gene030881.t1 AT5G16750 23.293 249 149 6 85 326 10 223 5.80e-11 65.1
MS.gene030881.t1 AT2G21390 23.028 317 173 11 78 366 2 275 4.52e-11 65.9
MS.gene030881.t1 AT2G43770 32.164 171 83 8 288 429 46 212 7.11e-11 63.9

Find 123 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTGAACCGTCGTCGTTT+AGG 0.241194 4.3:+10871333 None:intergenic
AGGTGCTGTCGTCAGAGTTT+AGG 0.258964 4.3:+10872104 None:intergenic
CACTGAACCGTCGTCGTTTA+GGG 0.263337 4.3:+10871334 None:intergenic
CTAACGACTTAACCGGTTTC+CGG 0.279074 4.3:+10871090 None:intergenic
GGTGCTGTCGTCAGAGTTTA+GGG 0.283281 4.3:+10872105 None:intergenic
AGGTGATAGGGCGGGAAGAG+TGG 0.294960 4.3:+10871960 None:intergenic
CTGATCGGACGGTTAGGATT+TGG 0.299611 4.3:-10871163 MS.gene030881:CDS
GGGACAAAACACTCAAAATA+TGG 0.300866 4.3:-10871556 MS.gene030881:CDS
GCGATCGTTCGATATTAGTA+TGG 0.311845 4.3:-10871295 MS.gene030881:CDS
AAGGTTTGGCAACTTTCTAT+TGG 0.313481 4.3:-10870975 MS.gene030881:CDS
TGGGTGTGATCTGGCCTCTC+AGG 0.327971 4.3:-10870955 MS.gene030881:CDS
CCGCGTCTTCATGTGCTTTG+AGG 0.338253 4.3:+10871504 None:intergenic
CGCGTCTTCATGTGCTTTGA+GGG 0.347304 4.3:+10871505 None:intergenic
CGGCGTAAAGGAGGTTGTTA+TGG 0.349908 4.3:+10871927 None:intergenic
AACACAGAAACGACGCCGTT+TGG 0.351900 4.3:+10871023 None:intergenic
GGCGGGAAGAGTGGGGTGTG+AGG 0.353577 4.3:+10871969 None:intergenic
GGAAGAGTGGGGTGTGAGGG+AGG 0.357497 4.3:+10871973 None:intergenic
CGGATAAACGAATACGCGTT+TGG 0.358390 4.3:-10871433 MS.gene030881:CDS
TGGTTGTGAGTGGGGCTTTG+AGG 0.360564 4.3:-10871247 MS.gene030881:CDS
ACTTTCTATTGGGTGTGATC+TGG 0.363822 4.3:-10870964 MS.gene030881:CDS
AGGTTTGGCAACTTTCTATT+GGG 0.364284 4.3:-10870974 MS.gene030881:CDS
GCATGTTGTTGTTTCTTAGA+TGG 0.370683 4.3:+10872157 None:intergenic
TTTAGTTGAACCGGAGGAAA+TGG 0.373748 4.3:+10871835 None:intergenic
GCGTTATCTACTCCGTTTCA+TGG 0.381531 4.3:-10871577 MS.gene030881:CDS
GAGTGAGATGGTTGAGTTGT+GGG 0.382726 4.3:+10872183 None:intergenic
GATGGTTGAGTTGTGGGTGG+TGG 0.397246 4.3:+10872189 None:intergenic
GCACGTTCTAGTTGCGACTT+TGG 0.398974 4.3:-10871387 MS.gene030881:CDS
GGTTGTGAGTGGGGCTTTGA+GGG 0.403858 4.3:-10871246 MS.gene030881:CDS
GTGGGTGGTGGTGGCGCAGT+TGG 0.406772 4.3:+10872201 None:intergenic
TGAACCGGAGGAAATGGATT+TGG 0.407021 4.3:+10871841 None:intergenic
TTCTTTAGACGGTGAAATAA+AGG 0.410331 4.3:-10870994 MS.gene030881:CDS
GCGGGAAGAGTGGGGTGTGA+GGG 0.410576 4.3:+10871970 None:intergenic
GTGATAGGGCGGGAAGAGTG+GGG 0.413241 4.3:+10871962 None:intergenic
GACGGTCGTAGACGTTGATT+TGG 0.422093 4.3:+10871894 None:intergenic
GGTGATAGGGCGGGAAGAGT+GGG 0.426722 4.3:+10871961 None:intergenic
GGATAAACGAATACGCGTTT+GGG 0.431453 4.3:-10871432 MS.gene030881:CDS
TAGACGGTGAAATAAAGGTT+TGG 0.432760 4.3:-10870989 MS.gene030881:CDS
GGTGGTGGTGGCGCAGTTGG+CGG 0.433020 4.3:+10872204 None:intergenic
TGGAGGGCAAGGGAGGTGAT+AGG 0.434136 4.3:+10871947 None:intergenic
ATTTGGAAGCGGGTTTATGA+TGG 0.440066 4.3:-10871146 MS.gene030881:CDS
GGTTGAGTTGTGGGTGGTGG+TGG 0.442279 4.3:+10872192 None:intergenic
TCTCGATGGTCACCGGAAAC+CGG 0.448997 4.3:-10871102 MS.gene030881:CDS
GGTGGTGGCGCAGTTGGCGG+AGG 0.449359 4.3:+10872207 None:intergenic
GGAGATATGTACACGTTTGA+CGG 0.458892 4.3:+10871876 None:intergenic
TGCTGAGTGGTTCTGCTGAT+CGG 0.460135 4.3:-10871178 MS.gene030881:CDS
ATTGCCGCTAACGACTTAAC+CGG 0.460335 4.3:+10871083 None:intergenic
GACGGTTAGGATTTGGAAGC+GGG 0.467016 4.3:-10871156 MS.gene030881:CDS
GGGCAAGGGAGGTGATAGGG+CGG 0.468879 4.3:+10871951 None:intergenic
GTTGTTGTTTCTTAGATGGA+TGG 0.471265 4.3:+10872161 None:intergenic
GTTCTGCTGATCGGACGGTT+AGG 0.471712 4.3:-10871169 MS.gene030881:CDS
AACACCAAATCCATTTCCTC+CGG 0.474707 4.3:-10871845 MS.gene030881:CDS
GGAGGTTGTTATGGAGGGCA+AGG 0.476994 4.3:+10871936 None:intergenic
GGCGTCGTTTCTGTGTTTAG+TGG 0.477810 4.3:-10871017 MS.gene030881:CDS
ATCAACTAATCATGAGGTTA+CGG 0.480358 4.3:-10872249 None:intergenic
GTGTTTAGTGGTTCTTTAGA+CGG 0.480377 4.3:-10871005 MS.gene030881:CDS
GTCGCCACGTAAAACGTCTC+TGG 0.481507 4.3:-10871643 MS.gene030881:CDS
GGAGGAGGAAACGGCGGAGA+CGG 0.486240 4.3:+10871687 None:intergenic
AGAGGATAGTGCAAATCATA+TGG 0.498930 4.3:-10871267 MS.gene030881:CDS
GGGTGTGATCTGGCCTCTCA+GGG 0.499450 4.3:-10870954 MS.gene030881:CDS
GTTGTTATGGAGGGCAAGGG+AGG 0.499756 4.3:+10871940 None:intergenic
TGTGGTGGTGGTTCCAGACA+CGG 0.508169 4.3:+10871759 None:intergenic
ACGGACCTTGCCGTCTCCAA+CGG 0.513299 4.3:-10871599 MS.gene030881:CDS
CGTTATCTACTCCGTTTCAT+GGG 0.513874 4.3:-10871576 MS.gene030881:CDS
TTGTGAGTGGGGCTTTGAGG+GGG 0.519148 4.3:-10871244 MS.gene030881:CDS
AAGACTGTAAAATCCGTGTC+TGG 0.524903 4.3:-10871772 MS.gene030881:CDS
GGAGGGCAAGGGAGGTGATA+GGG 0.530623 4.3:+10871948 None:intergenic
GGAAATGGATTTGGTGTTGA+AGG 0.532385 4.3:+10871850 None:intergenic
GTGTGAGGGAGGTGATGCAG+TGG 0.535067 4.3:+10871984 None:intergenic
TGTTGTGTTGGTGTTCTCGA+TGG 0.537133 4.3:-10871116 MS.gene030881:CDS
GGACGGTTAGGATTTGGAAG+CGG 0.537738 4.3:-10871157 MS.gene030881:CDS
TTTGGAAGCGGGTTTATGAT+GGG 0.537861 4.3:-10871145 MS.gene030881:CDS
ACGGCGGAGACGGTCGTTGA+CGG 0.541326 4.3:+10871697 None:intergenic
GGAGTGAGATGGTTGAGTTG+TGG 0.545632 4.3:+10872182 None:intergenic
CTTAGATGGATGGAGTGAGA+TGG 0.547151 4.3:+10872171 None:intergenic
TGAACATGCCGACGCTGTCA+CGG 0.551139 4.3:-10871618 MS.gene030881:CDS
TTTGGAGAGATGGAACTGAT+GGG 0.554738 4.3:+10872047 None:intergenic
ATCCGATGATCCTGTGTAGA+CGG 0.555899 4.3:+10871451 None:intergenic
GGCAAGGGAGGTGATAGGGC+GGG 0.557100 4.3:+10871952 None:intergenic
TTTCAGTTGCGGCGTAAAGG+AGG 0.557568 4.3:+10871918 None:intergenic
GTTGTGAGTGGGGCTTTGAG+GGG 0.558441 4.3:-10871245 MS.gene030881:CDS
TGGATTTGGTGTTGAAGGTG+TGG 0.559424 4.3:+10871855 None:intergenic
CGTAAAGGAGGTTGTTATGG+AGG 0.563981 4.3:+10871930 None:intergenic
AGGAGACGGAGAAGTTGTTG+AGG 0.565001 4.3:+10872008 None:intergenic
GTAGATAACGCCGTTGGAGA+CGG 0.567014 4.3:+10871589 None:intergenic
TGAGATGGTTGAGTTGTGGG+TGG 0.572126 4.3:+10872186 None:intergenic
GTCGTTGACGGTGGGAAGAG+TGG 0.575255 4.3:+10871709 None:intergenic
CGCGTTTGGGCGAAACCCGT+CGG 0.575820 4.3:-10871419 MS.gene030881:CDS
CGATCGTTCGATATTAGTAT+GGG 0.577039 4.3:-10871294 MS.gene030881:CDS
AACCGTCTACACAGGATCAT+CGG 0.578209 4.3:-10871453 MS.gene030881:CDS
GAGGTTGTTATGGAGGGCAA+GGG 0.579267 4.3:+10871937 None:intergenic
GAAAGTCAAAGTTCTCCAAA+CGG 0.579574 4.3:-10871038 MS.gene030881:CDS
GAAGACCATGTCTTTAGAGA+AGG 0.579938 4.3:+10871805 None:intergenic
GCAAATCATATGGTTGTGAG+TGG 0.588639 4.3:-10871257 MS.gene030881:CDS
GAGTGGTTCTGCTGATCGGA+CGG 0.588641 4.3:-10871174 MS.gene030881:CDS
GAGGGAGGTGATGCAGTGGT+AGG 0.589481 4.3:+10871988 None:intergenic
GTAAAGGAGGTTGTTATGGA+GGG 0.593750 4.3:+10871931 None:intergenic
GTCTCTGATTTGTTGCTGAG+TGG 0.599006 4.3:-10871191 MS.gene030881:CDS
TTGGTGTTCTCGATGGTCAC+CGG 0.602395 4.3:-10871109 MS.gene030881:CDS
CATCGCCTTCTCTAAAGACA+TGG 0.603402 4.3:-10871810 MS.gene030881:CDS
GGTGATGCAGTGGTAGGAGA+CGG 0.605357 4.3:+10871994 None:intergenic
GCGGAGACGGTCGTTGACGG+TGG 0.612720 4.3:+10871700 None:intergenic
CGGAGACGGTCGTTGACGGT+GGG 0.614987 4.3:+10871701 None:intergenic
GGCAAGGTCCGTGACAGCGT+CGG 0.616914 4.3:+10871610 None:intergenic
AACGATGGAACCGTCTACAC+AGG 0.620199 4.3:-10871461 MS.gene030881:CDS
AACGGAGTAGATAACGCCGT+TGG 0.621817 4.3:+10871583 None:intergenic
AAATCATATGGTTGTGAGTG+GGG 0.624059 4.3:-10871255 MS.gene030881:CDS
TAACGCCGTTGGAGACGGCA+AGG 0.624466 4.3:+10871594 None:intergenic
CAGAAAATATTGACCCTGAG+AGG 0.634509 4.3:+10870941 None:intergenic
CATGTCTTTAGAGAAGGCGA+TGG 0.637582 4.3:+10871811 None:intergenic
GCGGTTGCAGTTTCTAACGA+TGG 0.639355 4.3:-10871476 MS.gene030881:CDS
GAAGAGTGGTTAACTTGCGG+TGG 0.646427 4.3:+10871723 None:intergenic
GATATTAGTATGGGAACGAG+AGG 0.652105 4.3:-10871285 MS.gene030881:CDS
AATTCAAGAGTATAATGATG+AGG 0.660610 4.3:-10871063 MS.gene030881:CDS
CAAATCATATGGTTGTGAGT+GGG 0.660806 4.3:-10871256 MS.gene030881:CDS
GAAACCGGTTAAGTCGTTAG+CGG 0.662961 4.3:-10871087 MS.gene030881:CDS
TGGGAAGAGTGGTTAACTTG+CGG 0.663058 4.3:+10871720 None:intergenic
AACTAATCATGAGGTTACGG+TGG 0.663538 4.3:-10872246 None:intergenic
CCTCAAAGCACATGAAGACG+CGG 0.680860 4.3:-10871504 MS.gene030881:CDS
GTAGTTGCTATAGAGAGTTG+AGG 0.682756 4.3:+10872084 None:intergenic
TTTGGAGAAGCATAAATCAG+CGG 0.685092 4.3:-10871369 MS.gene030881:CDS
GCTTTAGCCCTAAACGACGA+CGG 0.704964 4.3:-10871341 MS.gene030881:CDS
ACATGAAGACGCGGTCAACG+CGG 0.728323 4.3:-10871495 MS.gene030881:CDS
TTTGTGGGAGGAGGAAACGG+CGG 0.729879 4.3:+10871681 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAGAGTATAATGATG+AGG - chr4.3:10872107-10872126 MS.gene030881:CDS 25.0%
TTCTTTAGACGGTGAAATAA+AGG - chr4.3:10872176-10872195 MS.gene030881:CDS 30.0%
AAATCATATGGTTGTGAGTG+GGG - chr4.3:10871915-10871934 MS.gene030881:CDS 35.0%
AAGGTTTGGCAACTTTCTAT+TGG - chr4.3:10872195-10872214 MS.gene030881:CDS 35.0%
AGAGGATAGTGCAAATCATA+TGG - chr4.3:10871903-10871922 MS.gene030881:CDS 35.0%
AGGTTTGGCAACTTTCTATT+GGG - chr4.3:10872196-10872215 MS.gene030881:CDS 35.0%
CAAATCATATGGTTGTGAGT+GGG - chr4.3:10871914-10871933 MS.gene030881:CDS 35.0%
CGATCGTTCGATATTAGTAT+GGG - chr4.3:10871876-10871895 MS.gene030881:CDS 35.0%
GAAAGTCAAAGTTCTCCAAA+CGG - chr4.3:10872132-10872151 MS.gene030881:CDS 35.0%
GGGACAAAACACTCAAAATA+TGG - chr4.3:10871614-10871633 MS.gene030881:CDS 35.0%
GTGTTTAGTGGTTCTTTAGA+CGG - chr4.3:10872165-10872184 MS.gene030881:CDS 35.0%
TAGACGGTGAAATAAAGGTT+TGG - chr4.3:10872181-10872200 MS.gene030881:CDS 35.0%
! TTTGGAGAAGCATAAATCAG+CGG - chr4.3:10871801-10871820 MS.gene030881:CDS 35.0%
!! GCATGTTGTTGTTTCTTAGA+TGG + chr4.3:10871016-10871035 None:intergenic 35.0%
!! GTTGTTGTTTCTTAGATGGA+TGG + chr4.3:10871012-10871031 None:intergenic 35.0%
!!! GGATGGTTATGTAGTTTTGT+GGG + chr4.3:10871507-10871526 None:intergenic 35.0%
!!! GGTTTTGAGAAGAGAGTTTT+TGG + chr4.3:10871144-10871163 None:intergenic 35.0%
!!! GTTGATTTGGTTTTCAGTTG+CGG + chr4.3:10871266-10871285 None:intergenic 35.0%
AACACCAAATCCATTTCCTC+CGG - chr4.3:10871325-10871344 MS.gene030881:CDS 40.0%
AAGACTGTAAAATCCGTGTC+TGG - chr4.3:10871398-10871417 MS.gene030881:CDS 40.0%
ACTTTCTATTGGGTGTGATC+TGG - chr4.3:10872206-10872225 MS.gene030881:CDS 40.0%
CAGAAAATATTGACCCTGAG+AGG + chr4.3:10872232-10872251 None:intergenic 40.0%
CGTTATCTACTCCGTTTCAT+GGG - chr4.3:10871594-10871613 MS.gene030881:CDS 40.0%
GATATTAGTATGGGAACGAG+AGG - chr4.3:10871885-10871904 MS.gene030881:CDS 40.0%
GCAAATCATATGGTTGTGAG+TGG - chr4.3:10871913-10871932 MS.gene030881:CDS 40.0%
GCGATCGTTCGATATTAGTA+TGG - chr4.3:10871875-10871894 MS.gene030881:CDS 40.0%
GGAGATATGTACACGTTTGA+CGG + chr4.3:10871297-10871316 None:intergenic 40.0%
GGATAAACGAATACGCGTTT+GGG - chr4.3:10871738-10871757 MS.gene030881:CDS 40.0%
GTAAAGGAGGTTGTTATGGA+GGG + chr4.3:10871242-10871261 None:intergenic 40.0%
GTAGTTGCTATAGAGAGTTG+AGG + chr4.3:10871089-10871108 None:intergenic 40.0%
TTTAGTTGAACCGGAGGAAA+TGG + chr4.3:10871338-10871357 None:intergenic 40.0%
TTTGGAGAGATGGAACTGAT+GGG + chr4.3:10871126-10871145 None:intergenic 40.0%
! AGACACGGATTTTACAGTCT+TGG + chr4.3:10871399-10871418 None:intergenic 40.0%
! ATTTGGAAGCGGGTTTATGA+TGG - chr4.3:10872024-10872043 MS.gene030881:CDS 40.0%
! GAAGACCATGTCTTTAGAGA+AGG + chr4.3:10871368-10871387 None:intergenic 40.0%
! GAGTGTTTTGTCCCATGAAA+CGG + chr4.3:10871608-10871627 None:intergenic 40.0%
! GATTTTACAGTCTTGGTGAG+TGG + chr4.3:10871392-10871411 None:intergenic 40.0%
! TTTGGAAGCGGGTTTATGAT+GGG - chr4.3:10872025-10872044 MS.gene030881:CDS 40.0%
!! CGGATGGTTATGTAGTTTTG+TGG + chr4.3:10871508-10871527 None:intergenic 40.0%
!! GAAGAGAGTTTTTGGAGAGA+TGG + chr4.3:10871136-10871155 None:intergenic 40.0%
!! GGAAATGGATTTGGTGTTGA+AGG + chr4.3:10871323-10871342 None:intergenic 40.0%
!! TTTTGGAGAGATGGAACTGA+TGG + chr4.3:10871127-10871146 None:intergenic 40.0%
!!! AACGTGCTTTTTTTCTCCGA+CGG + chr4.3:10871770-10871789 None:intergenic 40.0%
!!! GACGGTTCAGTGTTATTTTC+AGG - chr4.3:10871847-10871866 MS.gene030881:CDS 40.0%
!!! GGTGGTTGTTGTTGTTTTTG+TGG + chr4.3:10871432-10871451 None:intergenic 40.0%
!!! GGTTGTTGTTGTTTTTGTGG+TGG + chr4.3:10871429-10871448 None:intergenic 40.0%
!!! TGGTTATGTAGTTTTGTGGG+AGG + chr4.3:10871504-10871523 None:intergenic 40.0%
!!! TGTTGTTGTTTTTGTGGTGG+TGG + chr4.3:10871426-10871445 None:intergenic 40.0%
!!! TTATGTAGTTTTGTGGGAGG+AGG + chr4.3:10871501-10871520 None:intergenic 40.0%
AACCGTCTACACAGGATCAT+CGG - chr4.3:10871717-10871736 MS.gene030881:CDS 45.0%
ATCCGATGATCCTGTGTAGA+CGG + chr4.3:10871722-10871741 None:intergenic 45.0%
ATTGCCGCTAACGACTTAAC+CGG + chr4.3:10872090-10872109 None:intergenic 45.0%
CGGATAAACGAATACGCGTT+TGG - chr4.3:10871737-10871756 MS.gene030881:CDS 45.0%
CGTAAAGGAGGTTGTTATGG+AGG + chr4.3:10871243-10871262 None:intergenic 45.0%
CTTAGATGGATGGAGTGAGA+TGG + chr4.3:10871002-10871021 None:intergenic 45.0%
GAAACCGGTTAAGTCGTTAG+CGG - chr4.3:10872083-10872102 MS.gene030881:CDS 45.0%
GCGTTATCTACTCCGTTTCA+TGG - chr4.3:10871593-10871612 MS.gene030881:CDS 45.0%
! CAATCCAGAGACGTTTTACG+TGG + chr4.3:10871534-10871553 None:intergenic 45.0%
! CATCGCCTTCTCTAAAGACA+TGG - chr4.3:10871360-10871379 MS.gene030881:CDS 45.0%
! CATGTCTTTAGAGAAGGCGA+TGG + chr4.3:10871362-10871381 None:intergenic 45.0%
! CTAACGACTTAACCGGTTTC+CGG + chr4.3:10872083-10872102 None:intergenic 45.0%
! GAGTGAGATGGTTGAGTTGT+GGG + chr4.3:10870990-10871009 None:intergenic 45.0%
! TGAACCGGAGGAAATGGATT+TGG + chr4.3:10871332-10871351 None:intergenic 45.0%
! TGGGAAGAGTGGTTAACTTG+CGG + chr4.3:10871453-10871472 None:intergenic 45.0%
! TGTTGTGTTGGTGTTCTCGA+TGG - chr4.3:10872054-10872073 MS.gene030881:CDS 45.0%
!! AGTTTTGTGGGAGGAGGAAA+CGG + chr4.3:10871495-10871514 None:intergenic 45.0%
!! GATGGGTCGTTTTGTTGTGT+TGG - chr4.3:10872042-10872061 MS.gene030881:CDS 45.0%
!! GTCTCTGATTTGTTGCTGAG+TGG - chr4.3:10871979-10871998 MS.gene030881:CDS 45.0%
!! TGGATTTGGTGTTGAAGGTG+TGG + chr4.3:10871318-10871337 None:intergenic 45.0%
!!! ACGTGCTTTTTTTCTCCGAC+GGG + chr4.3:10871769-10871788 None:intergenic 45.0%
!!! GATGGTTTTAGTTGAACCGG+AGG + chr4.3:10871344-10871363 None:intergenic 45.0%
!!! GGCGATGGTTTTAGTTGAAC+CGG + chr4.3:10871347-10871366 None:intergenic 45.0%
AACACAGAAACGACGCCGTT+TGG + chr4.3:10872150-10872169 None:intergenic 50.0%
AACGATGGAACCGTCTACAC+AGG - chr4.3:10871709-10871728 MS.gene030881:CDS 50.0%
AACGGAGTAGATAACGCCGT+TGG + chr4.3:10871590-10871609 None:intergenic 50.0%
ACACTGAACCGTCGTCGTTT+AGG + chr4.3:10871840-10871859 None:intergenic 50.0%
AGGAGACGGAGAAGTTGTTG+AGG + chr4.3:10871165-10871184 None:intergenic 50.0%
CACTGAACCGTCGTCGTTTA+GGG + chr4.3:10871839-10871858 None:intergenic 50.0%
CCTCAAAGCACATGAAGACG+CGG - chr4.3:10871666-10871685 MS.gene030881:CDS 50.0%
CGCGTCTTCATGTGCTTTGA+GGG + chr4.3:10871668-10871687 None:intergenic 50.0%
CGGCGTAAAGGAGGTTGTTA+TGG + chr4.3:10871246-10871265 None:intergenic 50.0%
CTGATCGGACGGTTAGGATT+TGG - chr4.3:10872007-10872026 MS.gene030881:CDS 50.0%
GACGGTTAGGATTTGGAAGC+GGG - chr4.3:10872014-10872033 MS.gene030881:CDS 50.0%
GAGGTTGTTATGGAGGGCAA+GGG + chr4.3:10871236-10871255 None:intergenic 50.0%
GCGGTTGCAGTTTCTAACGA+TGG - chr4.3:10871694-10871713 MS.gene030881:CDS 50.0%
GCTTTAGCCCTAAACGACGA+CGG - chr4.3:10871829-10871848 MS.gene030881:CDS 50.0%
GGACGGTTAGGATTTGGAAG+CGG - chr4.3:10872013-10872032 MS.gene030881:CDS 50.0%
GGCGTCGTTTCTGTGTTTAG+TGG - chr4.3:10872153-10872172 MS.gene030881:CDS 50.0%
GTAGATAACGCCGTTGGAGA+CGG + chr4.3:10871584-10871603 None:intergenic 50.0%
TTTCAGTTGCGGCGTAAAGG+AGG + chr4.3:10871255-10871274 None:intergenic 50.0%
! AGAGACGTTTTACGTGGCGA+CGG + chr4.3:10871528-10871547 None:intergenic 50.0%
! AGGTGCTGTCGTCAGAGTTT+AGG + chr4.3:10871069-10871088 None:intergenic 50.0%
! GACGGTCGTAGACGTTGATT+TGG + chr4.3:10871279-10871298 None:intergenic 50.0%
! GCACGTTCTAGTTGCGACTT+TGG - chr4.3:10871783-10871802 MS.gene030881:CDS 50.0%
! GGAGTGAGATGGTTGAGTTG+TGG + chr4.3:10870991-10871010 None:intergenic 50.0%
! GGTGCTGTCGTCAGAGTTTA+GGG + chr4.3:10871068-10871087 None:intergenic 50.0%
! GGTTTTCAGTTGCGGCGTAA+AGG + chr4.3:10871258-10871277 None:intergenic 50.0%
! TGAGATGGTTGAGTTGTGGG+TGG + chr4.3:10870987-10871006 None:intergenic 50.0%
! TGCTGAGTGGTTCTGCTGAT+CGG - chr4.3:10871992-10872011 MS.gene030881:CDS 50.0%
! TTGGTGTTCTCGATGGTCAC+CGG - chr4.3:10872061-10872080 MS.gene030881:CDS 50.0%
!! GAAGAGTGGTTAACTTGCGG+TGG + chr4.3:10871450-10871469 None:intergenic 50.0%
ACATGAAGACGCGGTCAACG+CGG - chr4.3:10871675-10871694 MS.gene030881:CDS 55.0%
CCGCGTCTTCATGTGCTTTG+AGG + chr4.3:10871669-10871688 None:intergenic 55.0%
GGAGGTTGTTATGGAGGGCA+AGG + chr4.3:10871237-10871256 None:intergenic 55.0%
GGTGATGCAGTGGTAGGAGA+CGG + chr4.3:10871179-10871198 None:intergenic 55.0%
GTCGCCACGTAAAACGTCTC+TGG - chr4.3:10871527-10871546 MS.gene030881:CDS 55.0%
GTTCTGCTGATCGGACGGTT+AGG - chr4.3:10872001-10872020 MS.gene030881:CDS 55.0%
GTTGTTATGGAGGGCAAGGG+AGG + chr4.3:10871233-10871252 None:intergenic 55.0%
TCTCGATGGTCACCGGAAAC+CGG - chr4.3:10872068-10872087 MS.gene030881:CDS 55.0%
TGAACATGCCGACGCTGTCA+CGG - chr4.3:10871552-10871571 MS.gene030881:CDS 55.0%
TGGTTGTGAGTGGGGCTTTG+AGG - chr4.3:10871923-10871942 MS.gene030881:CDS 55.0%
TTTGTGGGAGGAGGAAACGG+CGG + chr4.3:10871492-10871511 None:intergenic 55.0%
! ACGTTTTACGTGGCGACGGA+TGG + chr4.3:10871524-10871543 None:intergenic 55.0%
! GAGTGGTTCTGCTGATCGGA+CGG - chr4.3:10871996-10872015 MS.gene030881:CDS 55.0%
! GATGGTTGAGTTGTGGGTGG+TGG + chr4.3:10870984-10871003 None:intergenic 55.0%
! GGTTGTGAGTGGGGCTTTGA+GGG - chr4.3:10871924-10871943 MS.gene030881:CDS 55.0%
!! GTTGTGAGTGGGGCTTTGAG+GGG - chr4.3:10871925-10871944 MS.gene030881:CDS 55.0%
!! TGTGGTGGTGGTTCCAGACA+CGG + chr4.3:10871414-10871433 None:intergenic 55.0%
!! TTGTGAGTGGGGCTTTGAGG+GGG - chr4.3:10871926-10871945 MS.gene030881:CDS 55.0%
ACGGACCTTGCCGTCTCCAA+CGG - chr4.3:10871571-10871590 MS.gene030881:CDS 60.0%
AGGTGATAGGGCGGGAAGAG+TGG + chr4.3:10871213-10871232 None:intergenic 60.0%
GAGGGAGGTGATGCAGTGGT+AGG + chr4.3:10871185-10871204 None:intergenic 60.0%
GGAGGGCAAGGGAGGTGATA+GGG + chr4.3:10871225-10871244 None:intergenic 60.0%
GGGTGTGATCTGGCCTCTCA+GGG - chr4.3:10872216-10872235 MS.gene030881:CDS 60.0%
GGTGATAGGGCGGGAAGAGT+GGG + chr4.3:10871212-10871231 None:intergenic 60.0%
GTCGTTGACGGTGGGAAGAG+TGG + chr4.3:10871464-10871483 None:intergenic 60.0%
GTGATAGGGCGGGAAGAGTG+GGG + chr4.3:10871211-10871230 None:intergenic 60.0%
GTGTGAGGGAGGTGATGCAG+TGG + chr4.3:10871189-10871208 None:intergenic 60.0%
TAACGCCGTTGGAGACGGCA+AGG + chr4.3:10871579-10871598 None:intergenic 60.0%
TGGAGGGCAAGGGAGGTGAT+AGG + chr4.3:10871226-10871245 None:intergenic 60.0%
TGGGTGTGATCTGGCCTCTC+AGG - chr4.3:10872215-10872234 MS.gene030881:CDS 60.0%
! GGTTGAGTTGTGGGTGGTGG+TGG + chr4.3:10870981-10871000 None:intergenic 60.0%
ACGGCGGAGACGGTCGTTGA+CGG + chr4.3:10871476-10871495 None:intergenic 65.0%
CGCGTTTGGGCGAAACCCGT+CGG - chr4.3:10871751-10871770 MS.gene030881:CDS 65.0%
CGGAGACGGTCGTTGACGGT+GGG + chr4.3:10871472-10871491 None:intergenic 65.0%
GCGGGAAGAGTGGGGTGTGA+GGG + chr4.3:10871203-10871222 None:intergenic 65.0%
GGAAGAGTGGGGTGTGAGGG+AGG + chr4.3:10871200-10871219 None:intergenic 65.0%
GGAGGAGGAAACGGCGGAGA+CGG + chr4.3:10871486-10871505 None:intergenic 65.0%
GGCAAGGGAGGTGATAGGGC+GGG + chr4.3:10871221-10871240 None:intergenic 65.0%
GGCAAGGTCCGTGACAGCGT+CGG + chr4.3:10871563-10871582 None:intergenic 65.0%
GGGCAAGGGAGGTGATAGGG+CGG + chr4.3:10871222-10871241 None:intergenic 65.0%
GCGGAGACGGTCGTTGACGG+TGG + chr4.3:10871473-10871492 None:intergenic 70.0%
GGCGGGAAGAGTGGGGTGTG+AGG + chr4.3:10871204-10871223 None:intergenic 70.0%
!! GGTGGTGGTGGCGCAGTTGG+CGG + chr4.3:10870969-10870988 None:intergenic 70.0%
!! GTGGGTGGTGGTGGCGCAGT+TGG + chr4.3:10870972-10870991 None:intergenic 70.0%
! GGTGGTGGCGCAGTTGGCGG+AGG + chr4.3:10870966-10870985 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 10870932 10872260 10870932 ID=MS.gene030881
chr4.3 mRNA 10870932 10872260 10870932 ID=MS.gene030881.t1;Parent=MS.gene030881
chr4.3 exon 10870932 10872260 10870932 ID=MS.gene030881.t1.exon1;Parent=MS.gene030881.t1
chr4.3 CDS 10870932 10872260 10870932 ID=cds.MS.gene030881.t1;Parent=MS.gene030881.t1
Gene Sequence

>MS.gene030881

ATGAGGTTACGGTGGTTGTTAGACACATGCTCCTCCGCCAACTGCGCCACCACCACCCACAACTCAACCATCTCACTCCATCCATCTAAGAAACAACAACATGCATCTGACTCAAGCACTTCTTCTTCTTCAACCCTAAACTCTGACGACAGCACCTCAACTCTCTATAGCAACTACTCAATACAAACACTCCCATCAGTTCCATCTCTCCAAAAACTCTCTTCTCAAAACCTCAACAACTTCTCCGTCTCCTACCACTGCATCACCTCCCTCACACCCCACTCTTCCCGCCCTATCACCTCCCTTGCCCTCCATAACAACCTCCTTTACGCCGCAACTGAAAACCAAATCAACGTCTACGACCGTCAAACGTGTACATATCTCCACACCTTCAACACCAAATCCATTTCCTCCGGTTCAACTAAAACCATCGCCTTCTCTAAAGACATGGTCTTCACCACTCACCAAGACTGTAAAATCCGTGTCTGGAACCACCACCACAAAAACAACAACAACCACCGCAAGTTAACCACTCTTCCCACCGTCAACGACCGTCTCCGCCGTTTCCTCCTCCCACAAAACTACATAACCATCCGTCGCCACGTAAAACGTCTCTGGATTGAACATGCCGACGCTGTCACGGACCTTGCCGTCTCCAACGGCGTTATCTACTCCGTTTCATGGGACAAAACACTCAAAATATGGAGAATCTCTGATCTTCGTTGCTTAGAATCCCTCAAAGCACATGAAGACGCGGTCAACGCGGTTGCAGTTTCTAACGATGGAACCGTCTACACAGGATCATCGGATAAACGAATACGCGTTTGGGCGAAACCCGTCGGAGAAAAAAAGCACGTTCTAGTTGCGACTTTGGAGAAGCATAAATCAGCGGTTAATGCTTTAGCCCTAAACGACGACGGTTCAGTGTTATTTTCAGGTGCATGCGATCGTTCGATATTAGTATGGGAACGAGAGGATAGTGCAAATCATATGGTTGTGAGTGGGGCTTTGAGGGGGCATCAGAAAGCAATACTGTGTTTGATCAACGTCTCTGATTTGTTGCTGAGTGGTTCTGCTGATCGGACGGTTAGGATTTGGAAGCGGGTTTATGATGGGTCGTTTTGTTGTGTTGGTGTTCTCGATGGTCACCGGAAACCGGTTAAGTCGTTAGCGGCAATTCAAGAGTATAATGATGAGGATGAAAGTCAAAGTTCTCCAAACGGCGTCGTTTCTGTGTTTAGTGGTTCTTTAGACGGTGAAATAAAGGTTTGGCAACTTTCTATTGGGTGTGATCTGGCCTCTCAGGGTCAATATTTTCTGAATTCCTAG
Protein sequence

>MS.gene030881.t1

MRLRWLLDTCSSANCATTTHNSTISLHPSKKQQHASDSSTSSSSTLNSDDSTSTLYSNYSIQTLPSVPSLQKLSSQNLNNFSVSYHCITSLTPHSSRPITSLALHNNLLYAATENQINVYDRQTCTYLHTFNTKSISSGSTKTIAFSKDMVFTTHQDCKIRVWNHHHKNNNNHRKLTTLPTVNDRLRRFLLPQNYITIRRHVKRLWIEHADAVTDLAVSNGVIYSVSWDKTLKIWRISDLRCLESLKAHEDAVNAVAVSNDGTVYTGSSDKRIRVWAKPVGEKKHVLVATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRVYDGSFCCVGVLDGHRKPVKSLAAIQEYNDEDESQSSPNGVVSVFSGSLDGEIKVWQLSIGCDLASQGQYFLNS