AlfalfaGEDB | MS.gene22414

M. sativa cultivar XinJiangDaYe / MS.gene22414

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22414.t1	XP_003625670.1	97.9	434	9	0	1	434	1	434	3.60E-245	857.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22414.t1	Q9SF86	67.1	426	129	4	9	433	1	416	1.9e-157	557.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22414.t1	G7L3U9	97.9	434	9	0	1	434	1	434	2.6e-245	857.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene22414	0.814278	1.67E-51	-1.69E-46
MS.gene049983	MS.gene22414	0.807896	4.04E-50	-1.69E-46
MS.gene053931	MS.gene22414	0.806003	1.02E-49	-1.69E-46
MS.gene054892	MS.gene22414	0.808459	3.06E-50	-1.69E-46
MS.gene054893	MS.gene22414	0.802322	5.93E-49	-1.69E-46
MS.gene056973	MS.gene22414	0.820403	6.99E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007411	MS.gene22414	PPI
MS.gene007535	MS.gene22414	PPI
MS.gene010581	MS.gene22414	PPI
MS.gene020660	MS.gene22414	PPI
MS.gene055900	MS.gene22414	PPI
MS.gene060919	MS.gene22414	PPI
MS.gene22414	MS.gene030881	PPI
MS.gene22414	MS.gene016020	PPI
MS.gene22414	MS.gene058907	PPI
MS.gene22414	MS.gene055900	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22414.t1	MTR_7g101800	97.926	434	9	0	1	434	1	434	0.0	883
MS.gene22414.t1	MTR_7g101800	97.685	432	10	0	3	434	15	446	0.0	878
MS.gene22414.t1	MTR_7g101800	97.887	426	9	0	9	434	1	426	0.0	867
MS.gene22414.t1	MTR_1g063910	78.588	439	85	7	1	434	1	435	0.0	697
MS.gene22414.t1	MTR_1g063910	79.070	430	82	6	9	434	1	426	0.0	693
MS.gene22414.t1	MTR_4g063950	57.849	344	131	4	41	382	45	376	6.41e-146	423
MS.gene22414.t1	MTR_8g008820	50.000	400	182	3	43	431	15	407	1.43e-138	404
MS.gene22414.t1	MTR_4g099130	50.000	384	165	4	9	387	1	362	5.46e-130	380
MS.gene22414.t1	MTR_5g013610	53.538	325	150	1	58	382	28	351	7.64e-124	363
MS.gene22414.t1	MTR_8g469230	54.785	303	128	3	77	375	115	412	1.63e-114	344

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22414.t1	AT3G09830	71.465	389	105	3	9	394	1	386	0.0	569
MS.gene22414.t1	AT3G09830	71.465	389	105	3	9	394	1	386	0.0	569
MS.gene22414.t1	AT3G09830	71.465	389	105	3	9	394	1	386	0.0	569
MS.gene22414.t1	AT5G03320	64.203	433	134	6	9	434	1	419	0.0	556
MS.gene22414.t1	AT5G03320	64.203	433	134	6	9	434	1	419	0.0	556
MS.gene22414.t1	AT2G39110	61.990	392	136	5	2	391	9	389	1.89e-161	462
MS.gene22414.t1	AT2G39110	62.597	385	131	5	9	391	1	374	8.28e-161	460
MS.gene22414.t1	AT2G28940	51.404	463	186	11	9	434	1	461	3.93e-156	450
MS.gene22414.t1	AT2G28940	59.119	318	111	6	135	434	26	342	3.63e-131	382
MS.gene22414.t1	AT5G47070	55.305	311	135	2	73	382	65	372	2.57e-120	357

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Find 111 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTTCAACTGATAT+TGG	0.242830	7.3:-11607255	MS.gene22414:CDS
AAAGGCTTGCAATCCGCGTC+TGG	0.468416	7.3:-11609465	MS.gene22414:CDS
AAATGACGAACACAAAGAAG+CGG	0.622868	7.3:-11607025	MS.gene22414:CDS
AAGAATGATGTATGGAGCTA+CGG	0.568634	7.3:-11607383	MS.gene22414:CDS
AATAACCAATTACTTTCTGT+AGG	0.547316	7.3:+11606987	None:intergenic
AATCTCCTATTCCATGGGAG+AGG	0.520478	7.3:+11608237	None:intergenic
AATGACGAACACAAAGAAGC+GGG	0.618356	7.3:-11607024	MS.gene22414:CDS
AATGCAAAGCTATCAGACTT+TGG	0.455491	7.3:-11607906	MS.gene22414:CDS
ACATGAGTTAGTCCATCTGA+TGG	0.614628	7.3:+11607867	None:intergenic
ACCTTCAACGTCAACATATG+TGG	0.520270	7.3:+11609428	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGCAATTTGAACATAAG+TGG	+	chr7.3:11609111-11609130	None:intergenic	30.0%
ACTTACTATACACTATGAGA+TGG	+	chr7.3:11607523-11607542	None:intergenic	30.0%
ATAAAGTCACTTGAACACAA+CGG	+	chr7.3:11607976-11607995	None:intergenic	30.0%
ATTAAGTGTGTTTGGATCTA+TGG	-	chr7.3:11608478-11608497	MS.gene22414:intron	30.0%
ATTCATAAATCAGAAGTCGT+TGG	+	chr7.3:11608279-11608298	None:intergenic	30.0%
GAATTTCAACTAATAAGCGA+TGG	+	chr7.3:11608896-11608915	None:intergenic	30.0%
GATAAGAAAGATGAACCTAA+AGG	-	chr7.3:11607103-11607122	MS.gene22414:CDS	30.0%
GTGAACAAAAGTTATTGGAA+TGG	-	chr7.3:11609285-11609304	MS.gene22414:CDS	30.0%
TAGTTAAAAACCCGAAGAAT+CGG	-	chr7.3:11609423-11609442	MS.gene22414:CDS	30.0%
TCAGTTGCTCTTTCAATATT+AGG	-	chr7.3:11607487-11607506	MS.gene22414:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	11606953	11609655	11606953	ID=MS.gene22414
chr7.3	mRNA	11606953	11609655	11606953	ID=MS.gene22414.t1;Parent=MS.gene22414
chr7.3	exon	11609646	11609655	11609646	ID=MS.gene22414.t1.exon1;Parent=MS.gene22414.t1
chr7.3	CDS	11609646	11609655	11609646	ID=cds.MS.gene22414.t1;Parent=MS.gene22414.t1
chr7.3	exon	11609149	11609546	11609149	ID=MS.gene22414.t1.exon2;Parent=MS.gene22414.t1
chr7.3	CDS	11609149	11609546	11609149	ID=cds.MS.gene22414.t1;Parent=MS.gene22414.t1
chr7.3	exon	11608176	11608436	11608176	ID=MS.gene22414.t1.exon3;Parent=MS.gene22414.t1
chr7.3	CDS	11608176	11608436	11608176	ID=cds.MS.gene22414.t1;Parent=MS.gene22414.t1
chr7.3	exon	11607857	11607979	11607857	ID=MS.gene22414.t1.exon4;Parent=MS.gene22414.t1
chr7.3	CDS	11607857	11607979	11607857	ID=cds.MS.gene22414.t1;Parent=MS.gene22414.t1
chr7.3	exon	11606953	11607465	11606953	ID=MS.gene22414.t1.exon5;Parent=MS.gene22414.t1
chr7.3	CDS	11606953	11607465	11606953	ID=cds.MS.gene22414.t1;Parent=MS.gene22414.t1

Gene Sequence

>MS.gene22414

ATGCAAGTAGGTGTGTTGAATTTAATTTCACAAGTTTTCGTGTTGATTTTCAATGTCTACTTCATGCCGTGTGTTTCTCAAGTTTCTTGTTTTCCTTATGAAAATGCAGTCTGGTCTGGTATTATGAAGTGTTTTCCATTCCACTCTAGCGATAAGAAAGATGAACCTAAAGGCTTGCAATCCGCGTCTGGTCGTTCTGACAGTTCCACATATGTTGACGTTGAAGGTAGAAGATGTGGTTCTGAATTGAATTCTCAGGATGTCTCGGATAGTGGCAGCGTGGAATCCCTGAGGAGGAATGCACCTCCTAATATGTCCCAAAGACCTAGTAATCTTAGAGTGTTTACTGTCTCTGAACTGAAATCGGCCACGAAGAATTTCAGTCGATCGGTTATGCTTGGAGAGGGTGGGTTCGGGTGTGTTTATCAGGGAGTAATTAGAAGTGTAGATGACCCATCTACAAGAATTGAGGTTGCGGTTAAACAACTTAGTAAAAGAGGAGTGCAGGTAAGGGTTTCCCTTATGTTATACTAATCAGTTGCTCTTTCAATATTAGGATAAGTTTTGCCATCTCATAGTGTATAGTAAGTTATTCTACTCTGCTGTGTGTATTATCTGTTTTATGATCATATAATAAATAATTGAATACGTTAAAAAAATGCTATGAATTGTCACACTCACATAGGTTGGTTAAGGTAGACATAGTCACATGTTTCAATAATATTTTCTCTTAGAGTATGACTAAGATTTGTTGATAAGTAGAAAGACACTCTCGCTATGCGTCTGCCATTTGGGCTTGGCCCATTCATTTGTTGGGTTTCGACTAGGGTCTAGGAGTACTGGAGGTGCCTGTGGCTAAGCCCTCCGTATTGCTTAGGAGGTAAACTTGTAAAGTGAATTGTAGTATTTAAACAAAGTTTTGCACTCTATATAACTCTAATTTTCATTGCATGATAGAAAAGTACAATGACCACTCTGGTCACAGAGACGCCGGCATAATTGGCCGAACTTTGTGATCAACCGTTGTGTTCAAGTGACTTTATCAGCTTACTTTAGAACTGGATTTCCCATTCTTCAAGATTTTATGGATTAATAATTAAAAGTTTCATGTTTTTACACCTTGTTATCCTTACTTGAGGCATGAACATTTTTGTTGTCAAGTGAGTTATGCAAGATAGGAATCAGGTGTTAATCTTGTTACTTTACTTTTGGTTTTCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTTCTGGGAATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGATACTGTGCCGATGATGATGAAAGAGGAATCCAACGACTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGAGCAGAGACTCCTCTCCCATGGAATAGGAGATTAAAAATAGCACACGATGCAGCTCGTGGATTGACATACCTGCACGAGGAAATGGATTTTCAGGTATAGGTTTATAGCATAACGTTTCCTAAATTCCTATTCAATTCAATTAAGTGTGTTTGGATCTATGGCAGTGAAAATTGTTTTTGATTGGATCCTACCCGAGGAGCCAAATTTGAATACTTTTGAACATATTTTATTTACTATTCAGATCGGTGAAGTTGATTAATGTCGTGCTAACTGTTTGCACATTGTTTAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGATCAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCGAGACTGGGACCATCAGATGGACTAACTCATGTTTCAACAGCGGTATATATTTTTATTAATCTATAATTTTGTCGATACAGATGTTAAGATATTGTTAACGTATAGGGAGATGTAATTGCTTTGTATATTTTCTAGTGACTATTTACAGCTGAGTGATAGCAACAAACTCTTCCTACTAACACACCATCGCTTATTAGTTGAAATTCAAACATGTCTCACTAAAGCATTTGGGTCCCACCTAAATTTGGTAGGACTCAGGAGTTTTAAGCAAAAAAATGAAACTTGTTAAAAAAAACGTGTGTAAGAGAGTGTGTTACTAGCATTTTTATTGCTTACATACTAATTACCAACCATTTAATTACCAACCATTATAAGTGGAATCCAGTGACTCAGATACACCACTTATGTTCAAATTGCTGTTTATGTTCATCAGGTTGTAGGAACAATGGGGTATGCAGCTCCTGAATATCTCCAAACTGGACGCCTTACATCAAAGAATGATGTATGGAGCTACGGTGTTTTCCTTTACGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAATCGCCCCAAGGGTGAACAAAAGTTATTGGAATGGATAAAGCCATACCTATCAGATACAAAGAAATTTCAACTGATATTGGATCCAAGACTTGATAAGAAACAAGTTATCAGATCAGCACAGAGACTTGCTACGATAGCTAACCGATGTTTAGTTAAAAACCCGAAGAATCGGCCAAAGATGAGTGAGGTTTTGGAAATGGTGAATGGAATAGTAGAATCATCATCCGACTCTAATTCGCAACTACCCTTGAAGAATGTTTCGCGAATAGAAGTTTCTCATGAAACTGAAATGACGAACACAAAGAAGCGGGCCATGGATCAGAAGCCTACAGAAAGTAATTGGTTATTTAGGTTGTGGAGACCAAAGCTTATAAGAACATGA

Protein sequence

>MS.gene22414.t1

MQVVWSGIMKCFPFHSSDKKDEPKGLQSASGRSDSSTYVDVEGRRCGSELNSQDVSDSGSVESLRRNAPPNMSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYQGVIRSVDDPSTRIEVAVKQLSKRGVQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRAETPLPWNRRLKIAHDAARGLTYLHEEMDFQIIFRDFKSSNILLDDQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYLQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIKPYLSDTKKFQLILDPRLDKKQVIRSAQRLATIANRCLVKNPKNRPKMSEVLEMVNGIVESSSDSNSQLPLKNVSRIEVSHETEMTNTKKRAMDQKPTESNWLFRLWRPKLIRT