Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064488.t1 | XP_003590467.1 | 100 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 8.40E-197 | 696 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064488.t1 | Q9LZG0 | 83.7 | 338 | 55 | 0 | 4 | 341 | 8 | 345 | 4.9e-169 | 595.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064488.t1 | G7IAA1 | 100.0 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 6.1e-197 | 696.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052011 | MS.gene064488 | PPI |
| MS.gene032177 | MS.gene064488 | PPI |
| MS.gene064488 | MS.gene003877 | PPI |
| MS.gene98726 | MS.gene064488 | PPI |
| MS.gene28335 | MS.gene064488 | PPI |
| MS.gene056386 | MS.gene064488 | PPI |
| MS.gene85276 | MS.gene064488 | PPI |
| MS.gene46881 | MS.gene064488 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064488.t1 | MTR_1g064060 | 100.000 | 341 | 0 | 0 | 1 | 341 | 1 | 341 | 0.0 | 710 |
| MS.gene064488.t1 | MTR_4g461070 | 96.188 | 341 | 13 | 0 | 1 | 341 | 1 | 341 | 0.0 | 686 |
| MS.gene064488.t1 | MTR_1g064060 | 98.997 | 299 | 3 | 0 | 1 | 299 | 1 | 299 | 0.0 | 615 |
| MS.gene064488.t1 | MTR_3g112040 | 25.382 | 327 | 212 | 14 | 12 | 326 | 27 | 333 | 2.85e-12 | 67.4 |
| MS.gene064488.t1 | MTR_3g081400 | 63.636 | 44 | 13 | 1 | 263 | 306 | 34 | 74 | 2.27e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064488.t1 | AT5G03300 | 83.728 | 338 | 55 | 0 | 4 | 341 | 8 | 345 | 0.0 | 608 |
| MS.gene064488.t1 | AT3G09820 | 82.891 | 339 | 58 | 0 | 3 | 341 | 6 | 344 | 0.0 | 598 |
| MS.gene064488.t1 | AT5G03300 | 84.247 | 292 | 46 | 0 | 50 | 341 | 1 | 292 | 0.0 | 528 |
| MS.gene064488.t1 | AT5G03300 | 84.247 | 292 | 46 | 0 | 50 | 341 | 1 | 292 | 0.0 | 528 |
| MS.gene064488.t1 | AT3G09820 | 84.068 | 295 | 47 | 0 | 47 | 341 | 8 | 302 | 0.0 | 526 |
| MS.gene064488.t1 | AT1G19600 | 25.904 | 332 | 217 | 14 | 14 | 336 | 23 | 334 | 6.87e-13 | 69.3 |
| MS.gene064488.t1 | AT4G27600 | 23.962 | 313 | 209 | 10 | 7 | 308 | 123 | 417 | 1.50e-11 | 65.5 |
Find 93 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAGCAACCCGAAAAT+TGG | 0.173309 | 1.4:-52513907 | MS.gene064488:CDS |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 1.4:+52514323 | None:intergenic |
| CATTCTGGGATTCAGGTATA+TGG | 0.238438 | 1.4:-52513469 | MS.gene064488:intron |
| GTATCAACTAATTTCTCTTT+AGG | 0.253965 | 1.4:+52513145 | None:intergenic |
| CCTCTGATGCCTTTGGCAAC+TGG | 0.264995 | 1.4:+52513260 | None:intergenic |
| TCTTTAGGTAATAGTATAAC+AGG | 0.271758 | 1.4:+52513160 | None:intergenic |
| GCCAAATATTTCTATATTGC+TGG | 0.282337 | 1.4:-52513771 | MS.gene064488:CDS |
| GCCAGCAATATAGAAATATT+TGG | 0.289493 | 1.4:+52513770 | None:intergenic |
| GCAACTAATTGAATGGATTC+AGG | 0.289892 | 1.4:+52513729 | None:intergenic |
| AATGTACTCCACATTATATT+TGG | 0.297073 | 1.4:+52514660 | None:intergenic |
| TAATGAAAATCAGGCTTCTC+TGG | 0.314330 | 1.4:+52512874 | None:intergenic |
| CAGTGGATGCTTCAAGTTCC+CGG | 0.330838 | 1.4:-52514399 | MS.gene064488:CDS |
| TTGAAGAACTCGCAGATAAA+TGG | 0.334608 | 1.4:+52513580 | None:intergenic |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 1.4:-52512980 | MS.gene064488:CDS |
| CTCTGATGCCTTTGGCAACT+GGG | 0.358279 | 1.4:+52513261 | None:intergenic |
| GCTCTAACACATTCTTCAAT+AGG | 0.364935 | 1.4:+52512946 | None:intergenic |
| ATTTCTTTCACAATTGGTTC+AGG | 0.365115 | 1.4:-52512974 | MS.gene064488:CDS |
| TTGCGTGCCTCTGATGCCTT+TGG | 0.366644 | 1.4:+52513253 | None:intergenic |
| ACTTGTGCTGTTTGTGTGGT+TGG | 0.384223 | 1.4:-52514153 | MS.gene064488:CDS |
| CAACCCGAAAATTGGGCATT+AGG | 0.401588 | 1.4:-52513899 | MS.gene064488:intron |
| AGAATCACTTAATGAAAATC+AGG | 0.407857 | 1.4:+52512865 | None:intergenic |
| TTTGAAGCAACCCGAAAATT+GGG | 0.412056 | 1.4:-52513906 | MS.gene064488:CDS |
| GGAAGGTGTTCTTCTCGGTA+TGG | 0.414489 | 1.4:-52515670 | MS.gene064488:CDS |
| ATTTATCTGCGAGTTCTTCA+AGG | 0.419149 | 1.4:-52513578 | MS.gene064488:CDS |
| GGTAAGTGCAGCCAGACCTT+TGG | 0.421838 | 1.4:+52512896 | None:intergenic |
| TTGTTTCAGGTACGATGAAA+TGG | 0.424015 | 1.4:-52514686 | MS.gene064488:intron |
| TACCTCCCAGCCATGAACTT+TGG | 0.426161 | 1.4:+52513407 | None:intergenic |
| TGCATCGGAAAGGACAAGTT+TGG | 0.428579 | 1.4:-52514357 | MS.gene064488:CDS |
| GTGCTTATCTTCAGCGAGAA+TGG | 0.430170 | 1.4:+52515467 | None:intergenic |
| GCGTTGGAAGGTGTTCTTCT+CGG | 0.431372 | 1.4:-52515675 | MS.gene064488:CDS |
| TATAATGTGGAGTACATTGC+TGG | 0.440841 | 1.4:-52514655 | MS.gene064488:CDS |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.450937 | 1.4:-52513000 | MS.gene064488:intron |
| GTGCTACTCAGAATTCAATC+AGG | 0.452939 | 1.4:-52514524 | MS.gene064488:CDS |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 1.4:-52512997 | MS.gene064488:intron |
| CGAGAATGGCATTGTTAAGC+TGG | 0.457932 | 1.4:+52515481 | None:intergenic |
| ACCAATGTAACTAGTGGCCC+CGG | 0.467806 | 1.4:+52514380 | None:intergenic |
| GAATTCAATCAGGGTTGCTC+AGG | 0.472160 | 1.4:-52514514 | MS.gene064488:intron |
| AGTGGATGCTTCAAGTTCCC+GGG | 0.474413 | 1.4:-52514398 | MS.gene064488:CDS |
| GTTATTTGCTGCGGCATGCT+CGG | 0.475346 | 1.4:+52513707 | None:intergenic |
| AAGGGCAATACCTGCTCCAT+TGG | 0.485108 | 1.4:+52513123 | None:intergenic |
| GCAATTTGCAGCTGATAAGT+TGG | 0.489440 | 1.4:+52513943 | None:intergenic |
| TTTGTGTGGTTGGTGGTGAA+AGG | 0.492976 | 1.4:-52514143 | MS.gene064488:intron |
| CAACTAATTGAATGGATTCA+GGG | 0.497187 | 1.4:+52513730 | None:intergenic |
| CCCGTATGTGTTGCTCAAGA+TGG | 0.505635 | 1.4:-52513199 | MS.gene064488:CDS |
| TCCATCAATAATAATGGCGT+TGG | 0.508293 | 1.4:-52515691 | None:intergenic |
| AATGTTATCATCCAAAGGTC+TGG | 0.508644 | 1.4:-52512907 | MS.gene064488:CDS |
| TGGATTCAGGGGATACAGTA+AGG | 0.509166 | 1.4:+52513742 | None:intergenic |
| AGGCATCAGAGGCACGCAAA+AGG | 0.511205 | 1.4:-52513249 | MS.gene064488:CDS |
| GAAGGTGTTCTTCTCGGTAT+GGG | 0.511845 | 1.4:-52515669 | MS.gene064488:CDS |
| CCCGGGGCCACTAGTTACAT+TGG | 0.515125 | 1.4:-52514381 | MS.gene064488:CDS |
| CCCATCTTGAGCAACACATA+CGG | 0.516893 | 1.4:+52513198 | None:intergenic |
| TGTGCTGTTTGTGTGGTTGG+TGG | 0.518619 | 1.4:-52514150 | MS.gene064488:CDS |
| CCGTATGTGTTGCTCAAGAT+GGG | 0.523351 | 1.4:-52513198 | MS.gene064488:CDS |
| TACGGCAGAGCTTTCTCCTG+TGG | 0.523507 | 1.4:+52513553 | None:intergenic |
| AATGAAAATCAGGCTTCTCT+GGG | 0.526760 | 1.4:+52512875 | None:intergenic |
| GAGAAATTAGTTGATACCAA+TGG | 0.529177 | 1.4:-52513139 | MS.gene064488:CDS |
| CGCAGATAAATGGTGCAGAA+AGG | 0.536901 | 1.4:+52513590 | None:intergenic |
| CGAGTTCTTCAAGGATCCAC+AGG | 0.539544 | 1.4:-52513569 | MS.gene064488:CDS |
| ATTGAAGAATGTGTTAGAGC+TGG | 0.541729 | 1.4:-52512943 | MS.gene064488:CDS |
| TTAGTTGATACCAATGGAGC+AGG | 0.545602 | 1.4:-52513133 | MS.gene064488:intron |
| GAAGATGAGAATACACCTAC+AGG | 0.551303 | 1.4:-52514177 | MS.gene064488:CDS |
| ATGCTCGGCAACTAATTGAA+TGG | 0.551334 | 1.4:+52513722 | None:intergenic |
| CCATCTTGAGCAACACATAC+GGG | 0.552682 | 1.4:+52513199 | None:intergenic |
| GACAGCAGAGATGTCGAGAA+GGG | 0.553853 | 1.4:+52515641 | None:intergenic |
| CGACAGCAGAGATGTCGAGA+AGG | 0.554336 | 1.4:+52515640 | None:intergenic |
| AGGAACTTGTGCTGTTTGTG+TGG | 0.555282 | 1.4:-52514157 | MS.gene064488:CDS |
| ACTAGTTACATTGGTTGCAT+CGG | 0.569490 | 1.4:-52514372 | MS.gene064488:CDS |
| TTACATTGGTTGCATCGGAA+AGG | 0.571263 | 1.4:-52514367 | MS.gene064488:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 1.4:-52514324 | MS.gene064488:CDS |
| CCAGTTGCCAAAGGCATCAG+AGG | 0.578685 | 1.4:-52513260 | MS.gene064488:CDS |
| TCTAACCTTGTTATTTGCTG+CGG | 0.578850 | 1.4:+52513698 | None:intergenic |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 1.4:+52512987 | None:intergenic |
| ATCAGCTGCAAATTGCTACA+AGG | 0.584960 | 1.4:-52513936 | MS.gene064488:CDS |
| AAAGATATCCCAGTTGCCAA+AGG | 0.593183 | 1.4:-52513269 | MS.gene064488:CDS |
| TCAATAATAATGGCGTTGGA+AGG | 0.596173 | 1.4:-52515687 | None:intergenic |
| CAGCAAATGTTATCATCCAA+AGG | 0.601761 | 1.4:-52512912 | MS.gene064488:CDS |
| AACTAATTGAATGGATTCAG+GGG | 0.625445 | 1.4:+52513731 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 1.4:-52514523 | MS.gene064488:CDS |
| TTGAAGAATGTGTTAGAGCT+GGG | 0.630423 | 1.4:-52512942 | MS.gene064488:CDS |
| AAGGATTACTGTTATCACAC+AGG | 0.637867 | 1.4:-52513230 | MS.gene064488:CDS |
| ACAGCAGAGATGTCGAGAAG+GGG | 0.640848 | 1.4:+52515642 | None:intergenic |
| CTTTAGGTAATAGTATAACA+GGG | 0.644006 | 1.4:+52513161 | None:intergenic |
| TTCCAAAGTTCATGGCTGGG+AGG | 0.650106 | 1.4:-52513409 | MS.gene064488:intron |
| CGGAAAGGACAAGTTTGGTG+AGG | 0.653563 | 1.4:-52514352 | MS.gene064488:CDS |
| GATGCAACCAATGTAACTAG+TGG | 0.655384 | 1.4:+52514374 | None:intergenic |
| CCAATGTAACTAGTGGCCCC+GGG | 0.655549 | 1.4:+52514381 | None:intergenic |
| CAAACAGCACAAGTTCCTGT+AGG | 0.659898 | 1.4:+52514162 | None:intergenic |
| GCATGCCGCAGCAAATAACA+AGG | 0.662561 | 1.4:-52513703 | MS.gene064488:intron |
| AGGATTACTGTTATCACACA+GGG | 0.665946 | 1.4:-52513229 | MS.gene064488:CDS |
| GTGGATGCTTCAAGTTCCCG+GGG | 0.678166 | 1.4:-52514397 | MS.gene064488:CDS |
| TGACCAGACTGAAAATGTCG+AGG | 0.681552 | 1.4:-52513302 | MS.gene064488:intron |
| AATGGCTGCCAAATATAATG+TGG | 0.689459 | 1.4:-52514668 | MS.gene064488:CDS |
| AATGTGGAGTACATTGCTGG+AGG | 0.697669 | 1.4:-52514652 | MS.gene064488:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTAATTTATCTTTA+CGG | - | chr1.4:52515054-52515073 | MS.gene064488:intron | 10.0% |
| !! | AATTATAAATTGACCTTAAA+TGG | + | chr1.4:52515493-52515512 | None:intergenic | 15.0% |
| !! | ATTATAAATTGACCTTAAAT+GGG | + | chr1.4:52515492-52515511 | None:intergenic | 15.0% |
| !! | TTTGATTAAGAAAAAATACA+AGG | + | chr1.4:52514451-52514470 | None:intergenic | 15.0% |
| !!! | GTAATTTCTTTTATATTAGT+TGG | - | chr1.4:52514072-52514091 | MS.gene064488:intron | 15.0% |
| !!! | TTCTTAATCAAAGTATTAAA+GGG | - | chr1.4:52514459-52514478 | MS.gene064488:intron | 15.0% |
| !!! | TTTATGATTTTTCTTTTTTC+AGG | - | chr1.4:52514005-52514024 | MS.gene064488:intron | 15.0% |
| !!! | TTTCTTAATCAAAGTATTAA+AGG | - | chr1.4:52514458-52514477 | MS.gene064488:intron | 15.0% |
| !!! | TTTTTAATAAATAGTTGAGA+AGG | - | chr1.4:52514758-52514777 | MS.gene064488:intron | 15.0% |
| !! | AACAAAGATCAAAACAAATA+AGG | + | chr1.4:52513440-52513459 | None:intergenic | 20.0% |
| !! | ACTTAATTCATTTAACAACT+AGG | - | chr1.4:52514340-52514359 | MS.gene064488:CDS | 20.0% |
| !! | ATAACATCAAAACCTTAATT+AGG | + | chr1.4:52513706-52513725 | None:intergenic | 20.0% |
| !! | TAATTTGAATTTGACAGTTT+AGG | + | chr1.4:52515029-52515048 | None:intergenic | 20.0% |
| !! | TAGAAAAAAAATCCCATTTA+AGG | - | chr1.4:52515477-52515496 | MS.gene064488:CDS | 20.0% |
| !! | TCAAACAACGAAAAAATAAA+CGG | + | chr1.4:52513345-52513364 | None:intergenic | 20.0% |
| !! | TTTGTTAAACATCCTAATTA+AGG | - | chr1.4:52513691-52513710 | MS.gene064488:intron | 20.0% |
| !!! | AGATTTTTAGCTGTTTTTAT+CGG | - | chr1.4:52513767-52513786 | MS.gene064488:CDS | 20.0% |
| !!! | GTTTTGATGTTATGTAAAAT+TGG | - | chr1.4:52513713-52513732 | MS.gene064488:CDS | 20.0% |
| !!! | TGAGTTTAACTTGTTTATTT+TGG | - | chr1.4:52513648-52513667 | MS.gene064488:intron | 20.0% |
| !!! | TTTTTATTGCATCTAATTGT+AGG | - | chr1.4:52514575-52514594 | MS.gene064488:intron | 20.0% |
| ! | AATGTACTCCACATTATATT+TGG | + | chr1.4:52513894-52513913 | None:intergenic | 25.0% |
| ! | AATTTCAGAACTGAATTCAA+TGG | + | chr1.4:52514319-52514338 | None:intergenic | 25.0% |
| ! | ATCAAATACTTCTAGTAGAA+AGG | + | chr1.4:52514900-52514919 | None:intergenic | 25.0% |
| ! | ATTAGATGCAATAAAAACGA+AGG | + | chr1.4:52514572-52514591 | None:intergenic | 25.0% |
| ! | CTTTAGGTAATAGTATAACA+GGG | + | chr1.4:52515393-52515412 | None:intergenic | 25.0% |
| ! | GTATCAACTAATTTCTCTTT+AGG | + | chr1.4:52515409-52515428 | None:intergenic | 25.0% |
| ! | TCAAATACTTCTAGTAGAAA+GGG | + | chr1.4:52514899-52514918 | None:intergenic | 25.0% |
| ! | TCTTTAGGTAATAGTATAAC+AGG | + | chr1.4:52515394-52515413 | None:intergenic | 25.0% |
| ! | TGATGTTATGTAAAATTGGT+TGG | - | chr1.4:52513717-52513736 | MS.gene064488:CDS | 25.0% |
| ! | TTATAGATTACTGTGTTTCT+GGG | - | chr1.4:52513956-52513975 | MS.gene064488:CDS | 25.0% |
| ! | TTTATAGATTACTGTGTTTC+TGG | - | chr1.4:52513955-52513974 | MS.gene064488:CDS | 25.0% |
| ! | TTTCATTTAGTAACTCATCT+TGG | - | chr1.4:52515214-52515233 | MS.gene064488:intron | 25.0% |
| !!! | AACTTGTTTATTTTGGTTGT+TGG | - | chr1.4:52513655-52513674 | MS.gene064488:intron | 25.0% |
| !!! | TCGTTTTCAATTTGATTTAC+AGG | - | chr1.4:52513039-52513058 | MS.gene064488:intron | 25.0% |
| !!! | TTCTTTTCTTCTGTTTTTGT+AGG | - | chr1.4:52515536-52515555 | MS.gene064488:intron | 25.0% |
| AATGTAAAAGCAAAACTGCA+AGG | + | chr1.4:52515196-52515215 | None:intergenic | 30.0% | |
| ACCAAAATGAAACACAGATA+CGG | + | chr1.4:52513560-52513579 | None:intergenic | 30.0% | |
| ATGTAAAAGCAAAACTGCAA+GGG | + | chr1.4:52515195-52515214 | None:intergenic | 30.0% | |
| CACAACTACAAAAAGCAAAA+GGG | + | chr1.4:52515449-52515468 | None:intergenic | 30.0% | |
| GCCAGCAATATAGAAATATT+TGG | + | chr1.4:52514784-52514803 | None:intergenic | 30.0% | |
| TCATCAAGATGACTAACATT+TGG | - | chr1.4:52514724-52514743 | MS.gene064488:intron | 30.0% | |
| TCGAATTTCAGATTCATCTT+TGG | - | chr1.4:52513124-52513143 | MS.gene064488:intron | 30.0% | |
| ! | AACTAATTGAATGGATTCAG+GGG | + | chr1.4:52514823-52514842 | None:intergenic | 30.0% |
| ! | AGAACATTTTCCAAAGTTCA+TGG | - | chr1.4:52515134-52515153 | MS.gene064488:intron | 30.0% |
| ! | ATTTCTTTCACAATTGGTTC+AGG | - | chr1.4:52515577-52515596 | MS.gene064488:intron | 30.0% |
| ! | ATTTTTCCATCTCTCAGTTT+TGG | - | chr1.4:52513742-52513761 | MS.gene064488:CDS | 30.0% |
| ! | CAACTAATTGAATGGATTCA+GGG | + | chr1.4:52514824-52514843 | None:intergenic | 30.0% |
| ! | CATATCAACTATCAACGTTT+TGG | - | chr1.4:52513155-52513174 | MS.gene064488:CDS | 30.0% |
| ! | GAGAAATTAGTTGATACCAA+TGG | - | chr1.4:52515412-52515431 | MS.gene064488:intron | 30.0% |
| ! | GCCAAATATTTCTATATTGC+TGG | - | chr1.4:52514780-52514799 | MS.gene064488:intron | 30.0% |
| ! | TTCGTGCTAGAATGTATTTT+AGG | - | chr1.4:52513618-52513637 | MS.gene064488:intron | 30.0% |
| ! | TTGACAGTTTAGGATTCTTA+CGG | + | chr1.4:52515019-52515038 | None:intergenic | 30.0% |
| !! | AGGTATATGGACTATGTTTT+TGG | - | chr1.4:52515095-52515114 | MS.gene064488:intron | 30.0% |
| !! | TTTGATTTTGCTTCTTACAG+TGG | - | chr1.4:52514135-52514154 | MS.gene064488:intron | 30.0% |
| AAGGATTACTGTTATCACAC+AGG | - | chr1.4:52515321-52515340 | MS.gene064488:intron | 35.0% | |
| AATGAAAATCAGGCTTCTCT+GGG | + | chr1.4:52515679-52515698 | None:intergenic | 35.0% | |
| AATGGCTGCCAAATATAATG+TGG | - | chr1.4:52513883-52513902 | MS.gene064488:intron | 35.0% | |
| AATGTTATCATCCAAAGGTC+TGG | - | chr1.4:52515644-52515663 | MS.gene064488:CDS | 35.0% | |
| AGATACTGAACAGATCAACA+AGG | + | chr1.4:52514680-52514699 | None:intergenic | 35.0% | |
| AGGATTACTGTTATCACACA+GGG | - | chr1.4:52515322-52515341 | MS.gene064488:intron | 35.0% | |
| ATACTTCTAGTAGAAAGGGA+AGG | + | chr1.4:52514895-52514914 | None:intergenic | 35.0% | |
| ATCTTTACGGATTTGCATTC+TGG | - | chr1.4:52515067-52515086 | MS.gene064488:intron | 35.0% | |
| ATTGAAGAATGTGTTAGAGC+TGG | - | chr1.4:52515608-52515627 | MS.gene064488:intron | 35.0% | |
| ATTTATCTGCGAGTTCTTCA+AGG | - | chr1.4:52514973-52514992 | MS.gene064488:intron | 35.0% | |
| CAGCAAATGTTATCATCCAA+AGG | - | chr1.4:52515639-52515658 | MS.gene064488:CDS | 35.0% | |
| GAGAGACAGATTAGCATATA+CGG | - | chr1.4:52513284-52513303 | MS.gene064488:CDS | 35.0% | |
| GCACAACTACAAAAAGCAAA+AGG | + | chr1.4:52515450-52515469 | None:intergenic | 35.0% | |
| GCTCTAACACATTCTTCAAT+AGG | + | chr1.4:52515608-52515627 | None:intergenic | 35.0% | |
| TAATGAAAATCAGGCTTCTC+TGG | + | chr1.4:52515680-52515699 | None:intergenic | 35.0% | |
| TATAATGTGGAGTACATTGC+TGG | - | chr1.4:52513896-52513915 | MS.gene064488:intron | 35.0% | |
| TATGATCCTACGATTGTTTC+AGG | - | chr1.4:52513852-52513871 | MS.gene064488:intron | 35.0% | |
| TCTTTACGGATTTGCATTCT+GGG | - | chr1.4:52515068-52515087 | MS.gene064488:intron | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | + | chr1.4:52515567-52515586 | None:intergenic | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | - | chr1.4:52514028-52514047 | MS.gene064488:intron | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | - | chr1.4:52515571-52515590 | MS.gene064488:intron | 35.0% | |
| TTGAAGAACTCGCAGATAAA+TGG | + | chr1.4:52514974-52514993 | None:intergenic | 35.0% | |
| TTGAAGAATGTGTTAGAGCT+GGG | - | chr1.4:52515609-52515628 | MS.gene064488:intron | 35.0% | |
| ! | ACTAGTTACATTGGTTGCAT+CGG | - | chr1.4:52514179-52514198 | MS.gene064488:CDS | 35.0% |
| ! | AGTATTTTTCTCCCTTGTGA+AGG | - | chr1.4:52514925-52514944 | MS.gene064488:intron | 35.0% |
| ! | ATTTGAAGCAACCCGAAAAT+TGG | - | chr1.4:52514644-52514663 | MS.gene064488:intron | 35.0% |
| ! | ATTTTCCAAAGTTCATGGCT+GGG | - | chr1.4:52515139-52515158 | MS.gene064488:intron | 35.0% |
| ! | GCAACTAATTGAATGGATTC+AGG | + | chr1.4:52514825-52514844 | None:intergenic | 35.0% |
| ! | GTGCTAGAAGAATGCTATTT+AGG | - | chr1.4:52513399-52513418 | MS.gene064488:intron | 35.0% |
| ! | TCCGTATCTGTGTTTCATTT+TGG | - | chr1.4:52513556-52513575 | MS.gene064488:CDS | 35.0% |
| ! | TTGTTTCAGGTACGATGAAA+TGG | - | chr1.4:52513865-52513884 | MS.gene064488:intron | 35.0% |
| ! | TTTGAAGCAACCCGAAAATT+GGG | - | chr1.4:52514645-52514664 | MS.gene064488:intron | 35.0% |
| ! | TTTTTCGTTGTTTGAGCGTT+TGG | - | chr1.4:52513350-52513369 | MS.gene064488:intron | 35.0% |
| !! | TCTAACCTTGTTATTTGCTG+CGG | + | chr1.4:52514856-52514875 | None:intergenic | 35.0% |
| !!! | AATTTTCGGGTTGCTTCAAA+TGG | + | chr1.4:52514645-52514664 | None:intergenic | 35.0% |
| AAAGATATCCCAGTTGCCAA+AGG | - | chr1.4:52515282-52515301 | MS.gene064488:intron | 40.0% | |
| ACCAAGAACTCTAAACAAGC+TGG | - | chr1.4:52514227-52514246 | MS.gene064488:intron | 40.0% | |
| AGACAGATTAGCATATACGG+TGG | - | chr1.4:52513287-52513306 | MS.gene064488:CDS | 40.0% | |
| ATCAGCTGCAAATTGCTACA+AGG | - | chr1.4:52514615-52514634 | MS.gene064488:intron | 40.0% | |
| ATCGTACCTGAAACAATCGT+AGG | + | chr1.4:52513861-52513880 | None:intergenic | 40.0% | |
| ATCTTGCCAAAACTGAGAGA+TGG | + | chr1.4:52513751-52513770 | None:intergenic | 40.0% | |
| ATGCTCGGCAACTAATTGAA+TGG | + | chr1.4:52514832-52514851 | None:intergenic | 40.0% | |
| CAGAACTGAATTCAATGGTC+CGG | + | chr1.4:52514314-52514333 | None:intergenic | 40.0% | |
| CATCATGAAGACCTTCACAA+GGG | + | chr1.4:52514939-52514958 | None:intergenic | 40.0% | |
| GAAGATGAGAATACACCTAC+AGG | - | chr1.4:52514374-52514393 | MS.gene064488:CDS | 40.0% | |
| GAAGGCTTCAAACAACGATA+TGG | + | chr1.4:52514554-52514573 | None:intergenic | 40.0% | |
| GATGCAACCAATGTAACTAG+TGG | + | chr1.4:52514180-52514199 | None:intergenic | 40.0% | |
| GCAATTTGCAGCTGATAAGT+TGG | + | chr1.4:52514611-52514630 | None:intergenic | 40.0% | |
| GTAATCACAAGTGTCAGTGT+CGG | + | chr1.4:52513499-52513518 | None:intergenic | 40.0% | |
| TCATCATGAAGACCTTCACA+AGG | + | chr1.4:52514940-52514959 | None:intergenic | 40.0% | |
| TTTGTAGGAGATGCCTTTGT+TGG | - | chr1.4:52515551-52515570 | MS.gene064488:intron | 40.0% | |
| ! | ACATTTTCAGTCTGGTCAAC+AGG | + | chr1.4:52515247-52515266 | None:intergenic | 40.0% |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | + | chr1.4:52514231-52514250 | None:intergenic | 40.0% |
| ! | CATTTTCCAAAGTTCATGGC+TGG | - | chr1.4:52515138-52515157 | MS.gene064488:intron | 40.0% |
| ! | GGTACCTAATGCCCAATTTT+CGG | + | chr1.4:52514659-52514678 | None:intergenic | 40.0% |
| ! | GTACCTAATGCCCAATTTTC+GGG | + | chr1.4:52514658-52514677 | None:intergenic | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | - | chr1.4:52514027-52514046 | MS.gene064488:intron | 40.0% |
| ! | TTACATTGGTTGCATCGGAA+AGG | - | chr1.4:52514184-52514203 | MS.gene064488:CDS | 40.0% |
| ! | TTAGTTGATACCAATGGAGC+AGG | - | chr1.4:52515418-52515437 | MS.gene064488:intron | 40.0% |
| !! | AGATTACTGTGTTTCTGGGA+AGG | - | chr1.4:52513960-52513979 | MS.gene064488:intron | 40.0% |
| !! | CATTCTGGGATTCAGGTATA+TGG | - | chr1.4:52515082-52515101 | MS.gene064488:intron | 40.0% |
| AATGTGGAGTACATTGCTGG+AGG | - | chr1.4:52513899-52513918 | MS.gene064488:intron | 45.0% | |
| ACGCCTTCGATCATAAGTGT+CGG | + | chr1.4:52513466-52513485 | None:intergenic | 45.0% | |
| CAAACAGCACAAGTTCCTGT+AGG | + | chr1.4:52514392-52514411 | None:intergenic | 45.0% | |
| CAACCCGAAAATTGGGCATT+AGG | - | chr1.4:52514652-52514671 | MS.gene064488:intron | 45.0% | |
| CAGATTAGCATATACGGTGG+CGG | - | chr1.4:52513290-52513309 | MS.gene064488:CDS | 45.0% | |
| CCATCTTGAGCAACACATAC+GGG | + | chr1.4:52515355-52515374 | None:intergenic | 45.0% | |
| CCCATCTTGAGCAACACATA+CGG | + | chr1.4:52515356-52515375 | None:intergenic | 45.0% | |
| CGAGAATGGCATTGTTAAGC+TGG | + | chr1.4:52513073-52513092 | None:intergenic | 45.0% | |
| CGCAGATAAATGGTGCAGAA+AGG | + | chr1.4:52514964-52514983 | None:intergenic | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | - | chr1.4:52514037-52514056 | MS.gene064488:intron | 45.0% | |
| GTGCTTATCTTCAGCGAGAA+TGG | + | chr1.4:52513087-52513106 | None:intergenic | 45.0% | |
| TGACCAGACTGAAAATGTCG+AGG | - | chr1.4:52515249-52515268 | MS.gene064488:intron | 45.0% | |
| TGCATCGGAAAGGACAAGTT+TGG | - | chr1.4:52514194-52514213 | MS.gene064488:intron | 45.0% | |
| TGGATTCAGGGGATACAGTA+AGG | + | chr1.4:52514812-52514831 | None:intergenic | 45.0% | |
| TTCAATCCGCTACACTGTAC+CGG | - | chr1.4:52514292-52514311 | MS.gene064488:intron | 45.0% | |
| ! | AAGTGTCAGTGTCGGACATT+GGG | + | chr1.4:52513491-52513510 | None:intergenic | 45.0% |
| ! | CCGTATGTGTTGCTCAAGAT+GGG | - | chr1.4:52515353-52515372 | MS.gene064488:intron | 45.0% |
| ! | TCTCCTCGACATTTTCAGTC+TGG | + | chr1.4:52515255-52515274 | None:intergenic | 45.0% |
| !! | ACTTGTGCTGTTTGTGTGGT+TGG | - | chr1.4:52514398-52514417 | MS.gene064488:CDS | 45.0% |
| !! | AGGAACTTGTGCTGTTTGTG+TGG | - | chr1.4:52514394-52514413 | MS.gene064488:CDS | 45.0% |
| !! | GAAGGTGTTCTTCTCGGTAT+GGG | - | chr1.4:52512882-52512901 | MS.gene064488:CDS | 45.0% |
| !! | GGATTTGCATTCTGGGATTC+AGG | - | chr1.4:52515075-52515094 | MS.gene064488:intron | 45.0% |
| !! | TTTGTGTGGTTGGTGGTGAA+AGG | - | chr1.4:52514408-52514427 | MS.gene064488:intron | 45.0% |
| !! | TTTTGGTTGTCTGAGCTGTC+AGG | - | chr1.4:52513573-52513592 | MS.gene064488:CDS | 45.0% |
| AAGGGCAATACCTGCTCCAT+TGG | + | chr1.4:52515431-52515450 | None:intergenic | 50.0% | |
| AATGGTCCGGTACAGTGTAG+CGG | + | chr1.4:52514301-52514320 | None:intergenic | 50.0% | |
| ACAGCAGAGATGTCGAGAAG+GGG | + | chr1.4:52512912-52512931 | None:intergenic | 50.0% | |
| ACCAATGTAACTAGTGGCCC+CGG | + | chr1.4:52514174-52514193 | None:intergenic | 50.0% | |
| CGAGTTCTTCAAGGATCCAC+AGG | - | chr1.4:52514982-52515001 | MS.gene064488:intron | 50.0% | |
| CTCTGATGCCTTTGGCAACT+GGG | + | chr1.4:52515293-52515312 | None:intergenic | 50.0% | |
| GACAGCAGAGATGTCGAGAA+GGG | + | chr1.4:52512913-52512932 | None:intergenic | 50.0% | |
| GCATGCCGCAGCAAATAACA+AGG | - | chr1.4:52514848-52514867 | MS.gene064488:intron | 50.0% | |
| GTAGGAGATGCCTTTGTTGG+AGG | - | chr1.4:52515554-52515573 | MS.gene064488:intron | 50.0% | |
| TACCTCCCAGCCATGAACTT+TGG | + | chr1.4:52515147-52515166 | None:intergenic | 50.0% | |
| TTCCAAAGTTCATGGCTGGG+AGG | - | chr1.4:52515142-52515161 | MS.gene064488:intron | 50.0% | |
| ! | AGTGGATGCTTCAAGTTCCC+GGG | - | chr1.4:52514153-52514172 | MS.gene064488:CDS | 50.0% |
| ! | CAAGTGTCAGTGTCGGACAT+TGG | + | chr1.4:52513492-52513511 | None:intergenic | 50.0% |
| ! | CAGTGGATGCTTCAAGTTCC+CGG | - | chr1.4:52514152-52514171 | MS.gene064488:CDS | 50.0% |
| ! | CCCGTATGTGTTGCTCAAGA+TGG | - | chr1.4:52515352-52515371 | MS.gene064488:intron | 50.0% |
| ! | CGGAAAGGACAAGTTTGGTG+AGG | - | chr1.4:52514199-52514218 | MS.gene064488:intron | 50.0% |
| ! | GCACCGACACTTATGATCGA+AGG | - | chr1.4:52513460-52513479 | MS.gene064488:intron | 50.0% |
| ! | GTTATTTGCTGCGGCATGCT+CGG | + | chr1.4:52514847-52514866 | None:intergenic | 50.0% |
| !! | GCGTTGGAAGGTGTTCTTCT+CGG | - | chr1.4:52512876-52512895 | MS.gene064488:CDS | 50.0% |
| !! | GGAAGGTGTTCTTCTCGGTA+TGG | - | chr1.4:52512881-52512900 | MS.gene064488:CDS | 50.0% |
| !! | GGTTGGTGGTGAAAGGTAAG+AGG | - | chr1.4:52514415-52514434 | MS.gene064488:intron | 50.0% |
| !! | TGTGCTGTTTGTGTGGTTGG+TGG | - | chr1.4:52514401-52514420 | MS.gene064488:intron | 50.0% |
| CCAATGTAACTAGTGGCCCC+GGG | + | chr1.4:52514173-52514192 | None:intergenic | 55.0% | |
| CCTCTGATGCCTTTGGCAAC+TGG | + | chr1.4:52515294-52515313 | None:intergenic | 55.0% | |
| CGACAGCAGAGATGTCGAGA+AGG | + | chr1.4:52512914-52512933 | None:intergenic | 55.0% | |
| GGTAAGTGCAGCCAGACCTT+TGG | + | chr1.4:52515658-52515677 | None:intergenic | 55.0% | |
| TACGGCAGAGCTTTCTCCTG+TGG | + | chr1.4:52515001-52515020 | None:intergenic | 55.0% | |
| TTGCGTGCCTCTGATGCCTT+TGG | + | chr1.4:52515301-52515320 | None:intergenic | 55.0% | |
| ! | AGGCATCAGAGGCACGCAAA+AGG | - | chr1.4:52515302-52515321 | MS.gene064488:intron | 55.0% |
| ! | GTGGATGCTTCAAGTTCCCG+GGG | - | chr1.4:52514154-52514173 | MS.gene064488:CDS | 55.0% |
| !! | CCAGTTGCCAAAGGCATCAG+AGG | - | chr1.4:52515291-52515310 | MS.gene064488:intron | 55.0% |
| CCCGGGGCCACTAGTTACAT+TGG | - | chr1.4:52514170-52514189 | MS.gene064488:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 52512873 | 52515700 | 52512873 | ID=MS.gene064488 |
| chr1.4 | mRNA | 52512873 | 52515700 | 52512873 | ID=MS.gene064488.t1;Parent=MS.gene064488 |
| chr1.4 | exon | 52515618 | 52515700 | 52515618 | ID=MS.gene064488.t1.exon1;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52515618 | 52515700 | 52515618 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52515459 | 52515512 | 52515459 | ID=MS.gene064488.t1.exon2;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52515459 | 52515512 | 52515459 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52514653 | 52514699 | 52514653 | ID=MS.gene064488.t1.exon3;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52514653 | 52514699 | 52514653 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52514515 | 52514546 | 52514515 | ID=MS.gene064488.t1.exon4;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52514515 | 52514546 | 52514515 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52514317 | 52514418 | 52514317 | ID=MS.gene064488.t1.exon5;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52514317 | 52514418 | 52514317 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52514144 | 52514211 | 52514144 | ID=MS.gene064488.t1.exon6;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52514144 | 52514211 | 52514144 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52513900 | 52513976 | 52513900 | ID=MS.gene064488.t1.exon7;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52513900 | 52513976 | 52513900 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52513704 | 52513801 | 52513704 | ID=MS.gene064488.t1.exon8;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52513704 | 52513801 | 52513704 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52513556 | 52513626 | 52513556 | ID=MS.gene064488.t1.exon9;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52513556 | 52513626 | 52513556 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52513410 | 52513476 | 52513410 | ID=MS.gene064488.t1.exon10;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52513410 | 52513476 | 52513410 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52513134 | 52513317 | 52513134 | ID=MS.gene064488.t1.exon11;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52513134 | 52513317 | 52513134 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| chr1.4 | exon | 52512873 | 52513015 | 52512873 | ID=MS.gene064488.t1.exon12;Parent=MS.gene064488.t1 |
| chr1.4 | CDS | 52512873 | 52513015 | 52512873 | ID=cds.MS.gene064488.t1;Parent=MS.gene064488.t1 |
| Gene Sequence |
| Protein sequence |
