Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064668.t1 | XP_013462123.1 | 95.4 | 370 | 14 | 1 | 1 | 367 | 1 | 370 | 2.20E-179 | 638.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064668.t1 | O31544 | 32.5 | 166 | 107 | 1 | 158 | 318 | 122 | 287 | 3.7e-21 | 104.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064668.t1 | A0A072V463 | 95.4 | 370 | 14 | 1 | 1 | 367 | 1 | 370 | 1.6e-179 | 638.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049599 | MS.gene064668 | 0.805753 | 1.15E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene064668 | 0.813803 | 2.13E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene064668 | 0.826355 | 2.84E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene064668 | 0.836536 | 8.83E-57 | -1.69E-46 |
| MS.gene056069 | MS.gene064668 | 0.81149 | 6.82E-51 | -1.69E-46 |
| MS.gene056969 | MS.gene064668 | 0.81875 | 1.67E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene064668 | -0.805637 | 1.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064668 | MS.gene44247 | PPI |
| MS.gene064668 | MS.gene017639 | PPI |
| MS.gene064668 | MS.gene89656 | PPI |
| MS.gene064668 | MS.gene42339 | PPI |
| MS.gene064668 | MS.gene012108 | PPI |
| MS.gene014514 | MS.gene064668 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064668.t1 | MTR_3g111890 | 93.243 | 370 | 22 | 1 | 1 | 367 | 1 | 370 | 0.0 | 660 |
| MS.gene064668.t1 | MTR_3g111890 | 93.243 | 370 | 22 | 1 | 1 | 367 | 1 | 370 | 0.0 | 659 |
| MS.gene064668.t1 | MTR_5g020300 | 55.399 | 213 | 93 | 1 | 111 | 321 | 59 | 271 | 6.58e-86 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064668.t1 | AT1G19480 | 61.972 | 355 | 115 | 6 | 15 | 367 | 41 | 377 | 4.24e-146 | 418 |
| MS.gene064668.t1 | AT1G19480 | 61.972 | 355 | 115 | 6 | 15 | 367 | 41 | 377 | 6.00e-146 | 418 |
| MS.gene064668.t1 | AT1G75230 | 60.789 | 380 | 114 | 5 | 6 | 367 | 24 | 386 | 7.68e-146 | 418 |
| MS.gene064668.t1 | AT1G75230 | 60.789 | 380 | 114 | 5 | 6 | 367 | 24 | 386 | 7.73e-146 | 418 |
| MS.gene064668.t1 | AT3G50880 | 54.152 | 277 | 90 | 4 | 46 | 320 | 29 | 270 | 2.02e-99 | 296 |
Find 113 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAACAGCTTCGTCAAAT+TGG | 0.169969 | 3.4:+96995112 | MS.gene064668:CDS |
| TGGTGGAATTGGTTGGCTTT+AGG | 0.180405 | 3.4:-96994751 | None:intergenic |
| CTTCGTCAAATTGGGGTTTC+TGG | 0.192533 | 3.4:+96995121 | MS.gene064668:CDS |
| TGATTCCGCTATTGTAAATA+TGG | 0.193076 | 3.4:+96995201 | MS.gene064668:CDS |
| TATGAATAACATGTTTAATA+TGG | 0.206711 | 3.4:+96995594 | MS.gene064668:CDS |
| ACTATGCTTACTATGGTTAA+TGG | 0.221809 | 3.4:+96995241 | MS.gene064668:CDS |
| GGTGGAATTGGTTGGCTTTA+GGG | 0.224070 | 3.4:-96994750 | None:intergenic |
| CTCAACAGCTTCGTCAAATT+GGG | 0.256135 | 3.4:+96995113 | MS.gene064668:CDS |
| GCTGCTGTTGCCACTGGCAA+TGG | 0.292196 | 3.4:+96995496 | MS.gene064668:CDS |
| AGCTAGTTATCTTCATGATT+TGG | 0.297314 | 3.4:+96995150 | MS.gene064668:CDS |
| TTATTCATAGGATCCATAAT+TGG | 0.299949 | 3.4:-96995580 | None:intergenic |
| CTATGCTTACTATGGTTAAT+GGG | 0.309757 | 3.4:+96995242 | MS.gene064668:CDS |
| TGGTTAATGGGATTGGTTCT+TGG | 0.310260 | 3.4:+96995254 | MS.gene064668:CDS |
| GCATTCACAACAACCAATTA+TGG | 0.336085 | 3.4:+96995567 | MS.gene064668:CDS |
| TTGGGTCGGGTGAGACCTTT+CGG | 0.350316 | 3.4:-96994703 | None:intergenic |
| ATATTAAACATGTTATTCAT+AGG | 0.364793 | 3.4:-96995592 | None:intergenic |
| CTTATCGTTCGGTTGCTTCA+TGG | 0.372094 | 3.4:+96995428 | MS.gene064668:CDS |
| AGCAATAAACCGGGTATAGA+TGG | 0.372851 | 3.4:-96995038 | None:intergenic |
| ATGAATAACATGTTTAATAT+GGG | 0.373528 | 3.4:+96995595 | MS.gene064668:CDS |
| CTTACTATGGTTAATGGGAT+TGG | 0.385045 | 3.4:+96995247 | MS.gene064668:CDS |
| ATTGAGATTCGGAGGTTGTT+GGG | 0.390972 | 3.4:-96994721 | None:intergenic |
| GGTACAAGATACTACGGGTT+AGG | 0.395255 | 3.4:-96994988 | None:intergenic |
| GATTCGGAGGTTGTTGGGTC+GGG | 0.407111 | 3.4:-96994716 | None:intergenic |
| TGGCTTGCAGCAGCATGAGC+TGG | 0.409325 | 3.4:+96995516 | MS.gene064668:CDS |
| CGAACACCAAGATCATTAAT+CGG | 0.413843 | 3.4:-96995325 | None:intergenic |
| GTTAGGGCAAGAACATTATC+AGG | 0.416123 | 3.4:-96995088 | None:intergenic |
| GACGAAGCTGTTGAGCAGTT+AGG | 0.418751 | 3.4:-96995105 | None:intergenic |
| ACCCCTTGTGGTTGTGGCTG+AGG | 0.426942 | 3.4:-96994542 | None:intergenic |
| ACGAAGCTGTTGAGCAGTTA+GGG | 0.427388 | 3.4:-96995104 | None:intergenic |
| CGATTAATGATCTTGGTGTT+CGG | 0.428190 | 3.4:+96995326 | MS.gene064668:CDS |
| GTTCTTCCGATTAATGATCT+TGG | 0.429181 | 3.4:+96995319 | MS.gene064668:CDS |
| ATGATCTTGGTGTTCGGAAA+GGG | 0.431899 | 3.4:+96995332 | MS.gene064668:CDS |
| TAGGGTTTCCGATTGAGATT+CGG | 0.437075 | 3.4:-96994732 | None:intergenic |
| ACTGCTGCTGCTGTTGCCAC+TGG | 0.440661 | 3.4:+96995490 | MS.gene064668:CDS |
| ATTGCTCAGTTCGGATTCTA+CGG | 0.445751 | 3.4:-96994624 | None:intergenic |
| CCGGCGGTGGTGGAATTGGT+TGG | 0.451771 | 3.4:-96994758 | None:intergenic |
| GCTCTATGCGGCGGTGAAGC+TGG | 0.455065 | 3.4:+96995058 | MS.gene064668:CDS |
| TCATTAATCGGAAGAACATC+AGG | 0.455995 | 3.4:-96995313 | None:intergenic |
| CGGCTTTAAAAGCGAGTTGT+TGG | 0.456722 | 3.4:-96995009 | None:intergenic |
| TTAGGGCAAGGAATGGAGTC+TGG | 0.460253 | 3.4:-96994970 | None:intergenic |
| TGATGGAACATTGCTCAGTT+CGG | 0.471327 | 3.4:-96994633 | None:intergenic |
| AGATTCGGAGGTTGTTGGGT+CGG | 0.473762 | 3.4:-96994717 | None:intergenic |
| GAAGAAACCCCTTGTGGTTG+TGG | 0.474078 | 3.4:-96994548 | None:intergenic |
| GATTGAGATTCGGAGGTTGT+TGG | 0.484783 | 3.4:-96994722 | None:intergenic |
| AACAACCTCCGAATCTCAAT+CGG | 0.488511 | 3.4:+96994724 | MS.gene064668:CDS |
| CGGTTGCTTCATGGTATATG+TGG | 0.491099 | 3.4:+96995437 | MS.gene064668:CDS |
| GACGGAGTCGACAGCGGTGG+TGG | 0.492448 | 3.4:-96994588 | None:intergenic |
| CGCCGCATAGAGCAATAAAC+CGG | 0.498184 | 3.4:-96995048 | None:intergenic |
| GTGGAGGTTTGTTGAAGCGA+AGG | 0.503950 | 3.4:+96995456 | MS.gene064668:CDS |
| GAAGTGGAAGCCTTATCGTT+CGG | 0.505451 | 3.4:+96995417 | MS.gene064668:CDS |
| GCTGCTGCTGCTGTTGATGG+TGG | 0.507705 | 3.4:-96995540 | None:intergenic |
| TGGAGGTTTGTTGAAGCGAA+GGG | 0.516701 | 3.4:+96995457 | MS.gene064668:CDS |
| CTTGCCTCGGCCATCTCAGA+TGG | 0.518209 | 3.4:+96995381 | MS.gene064668:CDS |
| ATCATCCATATTTACAATAG+CGG | 0.520609 | 3.4:-96995206 | None:intergenic |
| ACAATTGAGGTTCGTTGTTG+TGG | 0.522531 | 3.4:-96994818 | None:intergenic |
| TTGCTCAGTTCGGATTCTAC+GGG | 0.522751 | 3.4:-96994623 | None:intergenic |
| GTTATCTTCATGATTTGGCT+AGG | 0.524825 | 3.4:+96995155 | MS.gene064668:CDS |
| GCAACAGCAGCAGCAGTTGA+AGG | 0.531886 | 3.4:-96995484 | None:intergenic |
| GGAGTCGACAGCGGTGGTGG+CGG | 0.536044 | 3.4:-96994585 | None:intergenic |
| AATGATCTTGGTGTTCGGAA+AGG | 0.537519 | 3.4:+96995331 | MS.gene064668:CDS |
| CATGAAGCAACCGAACGATA+AGG | 0.537784 | 3.4:-96995427 | None:intergenic |
| GTGCGAAGGTGAAGTTGAGA+TGG | 0.543548 | 3.4:+96994868 | MS.gene064668:CDS |
| TGGCTAGGAAGTATCAGAAT+GGG | 0.545890 | 3.4:+96995170 | MS.gene064668:CDS |
| GTACAAGATACTACGGGTTA+GGG | 0.549172 | 3.4:-96994987 | None:intergenic |
| GGTGGCGGAGATTGTGTTGT+CGG | 0.551572 | 3.4:-96994570 | None:intergenic |
| GTTGTTGGTACAAGATACTA+CGG | 0.551894 | 3.4:-96994994 | None:intergenic |
| TTGCTTCATGGTATATGTGG+AGG | 0.557460 | 3.4:+96995440 | MS.gene064668:CDS |
| TCGGATCTTACGAGGACGGA+GGG | 0.560273 | 3.4:-96994684 | None:intergenic |
| TTGGCTAGGAAGTATCAGAA+TGG | 0.561670 | 3.4:+96995169 | MS.gene064668:CDS |
| TTGTTCCGAAAATTGTAGCT+AGG | 0.562008 | 3.4:+96994837 | MS.gene064668:CDS |
| ATAATCTAGATGACTTGCCT+CGG | 0.562183 | 3.4:+96995368 | MS.gene064668:CDS |
| TCAACAGCTTCGTCAAATTG+GGG | 0.564716 | 3.4:+96995114 | MS.gene064668:CDS |
| CCGGGTATAGATGGAAGTAC+CGG | 0.564853 | 3.4:-96995029 | None:intergenic |
| TGATCTTGGTGTTCGGAAAG+GGG | 0.566268 | 3.4:+96995333 | MS.gene064668:CDS |
| CCGGTACTTCCATCTATACC+CGG | 0.576685 | 3.4:+96995029 | MS.gene064668:CDS |
| TGGATCAATTATGTGAGAAG+TGG | 0.576910 | 3.4:+96995401 | MS.gene064668:CDS |
| CATAATTGATCCATCTGAGA+TGG | 0.576912 | 3.4:-96995391 | None:intergenic |
| CTACGGGTTAGGGCAAGGAA+TGG | 0.578814 | 3.4:-96994977 | None:intergenic |
| CAACGGACGGAACAACAAAA+CGG | 0.582839 | 3.4:+96994787 | MS.gene064668:CDS |
| ATTGAGGTTCGTTGTTGTGG+TGG | 0.584929 | 3.4:-96994815 | None:intergenic |
| GCTAGGTCACTTTCGTGCGA+AGG | 0.586188 | 3.4:+96994854 | MS.gene064668:CDS |
| AGATACTACGGGTTAGGGCA+AGG | 0.587198 | 3.4:-96994982 | None:intergenic |
| CCAACCAATTCCACCACCGC+CGG | 0.587677 | 3.4:+96994758 | MS.gene064668:CDS |
| TACGGGGATAATAGTTTCGA+CGG | 0.589338 | 3.4:-96994606 | None:intergenic |
| CCGCCGGAAAATCCAACGGA+CGG | 0.590648 | 3.4:+96994774 | MS.gene064668:CDS |
| CGATGAGAGGTGATAAGAGT+GGG | 0.592687 | 3.4:-96994916 | None:intergenic |
| CAACCTCAGCCACAACCACA+AGG | 0.593857 | 3.4:+96994539 | MS.gene064668:CDS |
| TGAATAACATGTTTAATATG+GGG | 0.599833 | 3.4:+96995596 | MS.gene064668:CDS |
| GGTTTCCGATTGAGATTCGG+AGG | 0.602513 | 3.4:-96994729 | None:intergenic |
| ACCTCAGCCACAACCACAAG+GGG | 0.604739 | 3.4:+96994541 | MS.gene064668:CDS |
| TGATCCATCTGAGATGGCCG+AGG | 0.610828 | 3.4:-96995385 | None:intergenic |
| CTGCTGCAAGCCATTGCCAG+TGG | 0.628730 | 3.4:-96995506 | None:intergenic |
| GAGACCTTTCGGATCTTACG+AGG | 0.632398 | 3.4:-96994692 | None:intergenic |
| AGAGTGGGTCTGCGGTACGA+AGG | 0.640787 | 3.4:-96994901 | None:intergenic |
| TTCGGATCTTACGAGGACGG+AGG | 0.648070 | 3.4:-96994685 | None:intergenic |
| CGGTTTATTGCTCTATGCGG+CGG | 0.648731 | 3.4:+96995049 | MS.gene064668:CDS |
| TTGTTGGTACAAGATACTAC+GGG | 0.649339 | 3.4:-96994993 | None:intergenic |
| AACCTCAGCCACAACCACAA+GGG | 0.649650 | 3.4:+96994540 | MS.gene064668:CDS |
| AGGTGATAAGAGTGGGTCTG+CGG | 0.654092 | 3.4:-96994909 | None:intergenic |
| AGTTTCGACGGAGTCGACAG+CGG | 0.661441 | 3.4:-96994594 | None:intergenic |
| CCGTCCTCGTAAGATCCGAA+AGG | 0.662065 | 3.4:+96994688 | MS.gene064668:CDS |
| ACCACCGCCGGAAAATCCAA+CGG | 0.663130 | 3.4:+96994770 | MS.gene064668:CDS |
| CCTTTCGGATCTTACGAGGA+CGG | 0.664581 | 3.4:-96994688 | None:intergenic |
| TTCGACGGAGTCGACAGCGG+TGG | 0.669382 | 3.4:-96994591 | None:intergenic |
| TGGAAATTATCAAACGTAGG+TGG | 0.669577 | 3.4:-96994950 | None:intergenic |
| TGCTCAGTTCGGATTCTACG+GGG | 0.671223 | 3.4:-96994622 | None:intergenic |
| TCGATGAGAGGTGATAAGAG+TGG | 0.675819 | 3.4:-96994917 | None:intergenic |
| ACCCGGTTTATTGCTCTATG+CGG | 0.679051 | 3.4:+96995046 | MS.gene064668:CDS |
| CGGATCTTACGAGGACGGAG+GGG | 0.706604 | 3.4:-96994683 | None:intergenic |
| GGTTGATGAATGTCGATGAG+AGG | 0.708425 | 3.4:-96994929 | None:intergenic |
| TTGTCGGAAGAAACCCCTTG+TGG | 0.713634 | 3.4:-96994554 | None:intergenic |
| GCCGCATAGAGCAATAAACC+GGG | 0.722126 | 3.4:-96995047 | None:intergenic |
| GTCTGGAAATTATCAAACGT+AGG | 0.725407 | 3.4:-96994953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAACATGTTATTCAT+AGG | - | chr3.4:96995595-96995614 | None:intergenic | 15.0% |
| !! | ATGAATAACATGTTTAATAT+GGG | + | chr3.4:96995595-96995614 | MS.gene064668:CDS | 15.0% |
| !! | TATGAATAACATGTTTAATA+TGG | + | chr3.4:96995594-96995613 | MS.gene064668:CDS | 15.0% |
| !! | TGAATAACATGTTTAATATG+GGG | + | chr3.4:96995596-96995615 | MS.gene064668:CDS | 20.0% |
| ! | ATCATCCATATTTACAATAG+CGG | - | chr3.4:96995209-96995228 | None:intergenic | 25.0% |
| ! | TTATTCATAGGATCCATAAT+TGG | - | chr3.4:96995583-96995602 | None:intergenic | 25.0% |
| ACTATGCTTACTATGGTTAA+TGG | + | chr3.4:96995241-96995260 | MS.gene064668:CDS | 30.0% | |
| AGCTAGTTATCTTCATGATT+TGG | + | chr3.4:96995150-96995169 | MS.gene064668:CDS | 30.0% | |
| CTATGCTTACTATGGTTAAT+GGG | + | chr3.4:96995242-96995261 | MS.gene064668:CDS | 30.0% | |
| TGATTCCGCTATTGTAAATA+TGG | + | chr3.4:96995201-96995220 | MS.gene064668:CDS | 30.0% | |
| ! | TACAATTTTCGGAACAATTG+AGG | - | chr3.4:96994834-96994853 | None:intergenic | 30.0% |
| CATAATTGATCCATCTGAGA+TGG | - | chr3.4:96995394-96995413 | None:intergenic | 35.0% | |
| CGAACACCAAGATCATTAAT+CGG | - | chr3.4:96995328-96995347 | None:intergenic | 35.0% | |
| CTTACTATGGTTAATGGGAT+TGG | + | chr3.4:96995247-96995266 | MS.gene064668:CDS | 35.0% | |
| GCATTCACAACAACCAATTA+TGG | + | chr3.4:96995567-96995586 | MS.gene064668:CDS | 35.0% | |
| GTCTGGAAATTATCAAACGT+AGG | - | chr3.4:96994956-96994975 | None:intergenic | 35.0% | |
| GTTCTTCCGATTAATGATCT+TGG | + | chr3.4:96995319-96995338 | MS.gene064668:CDS | 35.0% | |
| GTTGTTGGTACAAGATACTA+CGG | - | chr3.4:96994997-96995016 | None:intergenic | 35.0% | |
| TCATTAATCGGAAGAACATC+AGG | - | chr3.4:96995316-96995335 | None:intergenic | 35.0% | |
| TGGAAATTATCAAACGTAGG+TGG | - | chr3.4:96994953-96994972 | None:intergenic | 35.0% | |
| TGGATCAATTATGTGAGAAG+TGG | + | chr3.4:96995401-96995420 | MS.gene064668:CDS | 35.0% | |
| TTGTTCCGAAAATTGTAGCT+AGG | + | chr3.4:96994837-96994856 | MS.gene064668:CDS | 35.0% | |
| TTGTTGGTACAAGATACTAC+GGG | - | chr3.4:96994996-96995015 | None:intergenic | 35.0% | |
| ! | AGTGACCTAGCTACAATTTT+CGG | - | chr3.4:96994845-96994864 | None:intergenic | 35.0% |
| ! | ATAATCTAGATGACTTGCCT+CGG | + | chr3.4:96995368-96995387 | MS.gene064668:CDS | 35.0% |
| ! | GCTTTTCACTATGCTTACTA+TGG | + | chr3.4:96995234-96995253 | MS.gene064668:CDS | 35.0% |
| ! | GTTATCTTCATGATTTGGCT+AGG | + | chr3.4:96995155-96995174 | MS.gene064668:CDS | 35.0% |
| !! | CGATTAATGATCTTGGTGTT+CGG | + | chr3.4:96995326-96995345 | MS.gene064668:CDS | 35.0% |
| AACAACCTCCGAATCTCAAT+CGG | + | chr3.4:96994724-96994743 | MS.gene064668:CDS | 40.0% | |
| ACAATTGAGGTTCGTTGTTG+TGG | - | chr3.4:96994821-96994840 | None:intergenic | 40.0% | |
| AGCAATAAACCGGGTATAGA+TGG | - | chr3.4:96995041-96995060 | None:intergenic | 40.0% | |
| ATTGAGATTCGGAGGTTGTT+GGG | - | chr3.4:96994724-96994743 | None:intergenic | 40.0% | |
| ATTGCTCAGTTCGGATTCTA+CGG | - | chr3.4:96994627-96994646 | None:intergenic | 40.0% | |
| CTCAACAGCTTCGTCAAATT+GGG | + | chr3.4:96995113-96995132 | MS.gene064668:CDS | 40.0% | |
| GTTAGGGCAAGAACATTATC+AGG | - | chr3.4:96995091-96995110 | None:intergenic | 40.0% | |
| TACGGGGATAATAGTTTCGA+CGG | - | chr3.4:96994609-96994628 | None:intergenic | 40.0% | |
| TAGGGTTTCCGATTGAGATT+CGG | - | chr3.4:96994735-96994754 | None:intergenic | 40.0% | |
| TCAACAGCTTCGTCAAATTG+GGG | + | chr3.4:96995114-96995133 | MS.gene064668:CDS | 40.0% | |
| TGATGGAACATTGCTCAGTT+CGG | - | chr3.4:96994636-96994655 | None:intergenic | 40.0% | |
| TTGCTTCATGGTATATGTGG+AGG | + | chr3.4:96995440-96995459 | MS.gene064668:CDS | 40.0% | |
| ! | GTACAAGATACTACGGGTTA+GGG | - | chr3.4:96994990-96995009 | None:intergenic | 40.0% |
| !! | AATGATCTTGGTGTTCGGAA+AGG | + | chr3.4:96995331-96995350 | MS.gene064668:CDS | 40.0% |
| !! | ATGATCTTGGTGTTCGGAAA+GGG | + | chr3.4:96995332-96995351 | MS.gene064668:CDS | 40.0% |
| !! | TGGCTAGGAAGTATCAGAAT+GGG | + | chr3.4:96995170-96995189 | MS.gene064668:CDS | 40.0% |
| !! | TGGTTAATGGGATTGGTTCT+TGG | + | chr3.4:96995254-96995273 | MS.gene064668:CDS | 40.0% |
| !! | TTGGCTAGGAAGTATCAGAA+TGG | + | chr3.4:96995169-96995188 | MS.gene064668:CDS | 40.0% |
| !!! | CAACAACTCGCTTTTAAAGC+CGG | + | chr3.4:96995010-96995029 | MS.gene064668:CDS | 40.0% |
| ACCCGGTTTATTGCTCTATG+CGG | + | chr3.4:96995046-96995065 | MS.gene064668:CDS | 45.0% | |
| ACGAAGCTGTTGAGCAGTTA+GGG | - | chr3.4:96995107-96995126 | None:intergenic | 45.0% | |
| ATTGAGGTTCGTTGTTGTGG+TGG | - | chr3.4:96994818-96994837 | None:intergenic | 45.0% | |
| CAACGGACGGAACAACAAAA+CGG | + | chr3.4:96994787-96994806 | MS.gene064668:CDS | 45.0% | |
| CATGAAGCAACCGAACGATA+AGG | - | chr3.4:96995430-96995449 | None:intergenic | 45.0% | |
| CGATGAGAGGTGATAAGAGT+GGG | - | chr3.4:96994919-96994938 | None:intergenic | 45.0% | |
| CGGTTGCTTCATGGTATATG+TGG | + | chr3.4:96995437-96995456 | MS.gene064668:CDS | 45.0% | |
| CTTATCGTTCGGTTGCTTCA+TGG | + | chr3.4:96995428-96995447 | MS.gene064668:CDS | 45.0% | |
| CTTCGTCAAATTGGGGTTTC+TGG | + | chr3.4:96995121-96995140 | MS.gene064668:CDS | 45.0% | |
| GATTGAGATTCGGAGGTTGT+TGG | - | chr3.4:96994725-96994744 | None:intergenic | 45.0% | |
| GCTCAACAGCTTCGTCAAAT+TGG | + | chr3.4:96995112-96995131 | MS.gene064668:CDS | 45.0% | |
| GGTACAAGATACTACGGGTT+AGG | - | chr3.4:96994991-96995010 | None:intergenic | 45.0% | |
| TCGATGAGAGGTGATAAGAG+TGG | - | chr3.4:96994920-96994939 | None:intergenic | 45.0% | |
| TTGCTCAGTTCGGATTCTAC+GGG | - | chr3.4:96994626-96994645 | None:intergenic | 45.0% | |
| ! | GAAGTGGAAGCCTTATCGTT+CGG | + | chr3.4:96995417-96995436 | MS.gene064668:CDS | 45.0% |
| !! | CGGCTTTAAAAGCGAGTTGT+TGG | - | chr3.4:96995012-96995031 | None:intergenic | 45.0% |
| !! | GGTGGAATTGGTTGGCTTTA+GGG | - | chr3.4:96994753-96994772 | None:intergenic | 45.0% |
| !! | GGTTGATGAATGTCGATGAG+AGG | - | chr3.4:96994932-96994951 | None:intergenic | 45.0% |
| !! | TGATCTTGGTGTTCGGAAAG+GGG | + | chr3.4:96995333-96995352 | MS.gene064668:CDS | 45.0% |
| !! | TGGAGGTTTGTTGAAGCGAA+GGG | + | chr3.4:96995457-96995476 | MS.gene064668:CDS | 45.0% |
| !! | TGGTGGAATTGGTTGGCTTT+AGG | - | chr3.4:96994754-96994773 | None:intergenic | 45.0% |
| AACCTCAGCCACAACCACAA+GGG | + | chr3.4:96994540-96994559 | MS.gene064668:CDS | 50.0% | |
| AGATTCGGAGGTTGTTGGGT+CGG | - | chr3.4:96994720-96994739 | None:intergenic | 50.0% | |
| AGGTGATAAGAGTGGGTCTG+CGG | - | chr3.4:96994912-96994931 | None:intergenic | 50.0% | |
| CCGGTACTTCCATCTATACC+CGG | + | chr3.4:96995029-96995048 | MS.gene064668:CDS | 50.0% | |
| CCTTTCGGATCTTACGAGGA+CGG | - | chr3.4:96994691-96994710 | None:intergenic | 50.0% | |
| CGCCGCATAGAGCAATAAAC+CGG | - | chr3.4:96995051-96995070 | None:intergenic | 50.0% | |
| CGGTTTATTGCTCTATGCGG+CGG | + | chr3.4:96995049-96995068 | MS.gene064668:CDS | 50.0% | |
| GAAGAAACCCCTTGTGGTTG+TGG | - | chr3.4:96994551-96994570 | None:intergenic | 50.0% | |
| GACGAAGCTGTTGAGCAGTT+AGG | - | chr3.4:96995108-96995127 | None:intergenic | 50.0% | |
| GAGACCTTTCGGATCTTACG+AGG | - | chr3.4:96994695-96994714 | None:intergenic | 50.0% | |
| GCCGCATAGAGCAATAAACC+GGG | - | chr3.4:96995050-96995069 | None:intergenic | 50.0% | |
| GGTTTCCGATTGAGATTCGG+AGG | - | chr3.4:96994732-96994751 | None:intergenic | 50.0% | |
| GTGCGAAGGTGAAGTTGAGA+TGG | + | chr3.4:96994868-96994887 | MS.gene064668:CDS | 50.0% | |
| TGCTCAGTTCGGATTCTACG+GGG | - | chr3.4:96994625-96994644 | None:intergenic | 50.0% | |
| TTAGGGCAAGGAATGGAGTC+TGG | - | chr3.4:96994973-96994992 | None:intergenic | 50.0% | |
| TTGTCGGAAGAAACCCCTTG+TGG | - | chr3.4:96994557-96994576 | None:intergenic | 50.0% | |
| ! | CCGGGTATAGATGGAAGTAC+CGG | - | chr3.4:96995032-96995051 | None:intergenic | 50.0% |
| ! | GTTCCGTCCGTTGGATTTTC+CGG | - | chr3.4:96994780-96994799 | None:intergenic | 50.0% |
| !! | AGATACTACGGGTTAGGGCA+AGG | - | chr3.4:96994985-96995004 | None:intergenic | 50.0% |
| !! | GTGGAGGTTTGTTGAAGCGA+AGG | + | chr3.4:96995456-96995475 | MS.gene064668:CDS | 50.0% |
| !!! | CGTTTTGTTGTTCCGTCCGT+TGG | - | chr3.4:96994789-96994808 | None:intergenic | 50.0% |
| ACCACCGCCGGAAAATCCAA+CGG | + | chr3.4:96994770-96994789 | MS.gene064668:CDS | 55.0% | |
| ACCTCAGCCACAACCACAAG+GGG | + | chr3.4:96994541-96994560 | MS.gene064668:CDS | 55.0% | |
| AGTTTCGACGGAGTCGACAG+CGG | - | chr3.4:96994597-96994616 | None:intergenic | 55.0% | |
| CAACCTCAGCCACAACCACA+AGG | + | chr3.4:96994539-96994558 | MS.gene064668:CDS | 55.0% | |
| CCGTCCTCGTAAGATCCGAA+AGG | + | chr3.4:96994688-96994707 | MS.gene064668:CDS | 55.0% | |
| GATTCGGAGGTTGTTGGGTC+GGG | - | chr3.4:96994719-96994738 | None:intergenic | 55.0% | |
| GCAACAGCAGCAGCAGTTGA+AGG | - | chr3.4:96995487-96995506 | None:intergenic | 55.0% | |
| TCGGATCTTACGAGGACGGA+GGG | - | chr3.4:96994687-96994706 | None:intergenic | 55.0% | |
| TTCGGATCTTACGAGGACGG+AGG | - | chr3.4:96994688-96994707 | None:intergenic | 55.0% | |
| TTGGGTCGGGTGAGACCTTT+CGG | - | chr3.4:96994706-96994725 | None:intergenic | 55.0% | |
| ! | GCTAGGTCACTTTCGTGCGA+AGG | + | chr3.4:96994854-96994873 | MS.gene064668:CDS | 55.0% |
| ! | TGATCCATCTGAGATGGCCG+AGG | - | chr3.4:96995388-96995407 | None:intergenic | 55.0% |
| !! | CTACGGGTTAGGGCAAGGAA+TGG | - | chr3.4:96994980-96994999 | None:intergenic | 55.0% |
| !! | GGTGGCGGAGATTGTGTTGT+CGG | - | chr3.4:96994573-96994592 | None:intergenic | 55.0% |
| !!! | ACGGAGGGGCATTTTTGTGG+CGG | - | chr3.4:96994672-96994691 | None:intergenic | 55.0% |
| !!! | AGGACGGAGGGGCATTTTTG+TGG | - | chr3.4:96994675-96994694 | None:intergenic | 55.0% |
| !!! | TTTTCCGGCGGTGGTGGAAT+TGG | - | chr3.4:96994765-96994784 | None:intergenic | 55.0% |
| ACCCCTTGTGGTTGTGGCTG+AGG | - | chr3.4:96994545-96994564 | None:intergenic | 60.0% | |
| ACTGCTGCTGCTGTTGCCAC+TGG | + | chr3.4:96995490-96995509 | MS.gene064668:CDS | 60.0% | |
| AGAGTGGGTCTGCGGTACGA+AGG | - | chr3.4:96994904-96994923 | None:intergenic | 60.0% | |
| CCAACCAATTCCACCACCGC+CGG | + | chr3.4:96994758-96994777 | MS.gene064668:CDS | 60.0% | |
| CCGCCGGAAAATCCAACGGA+CGG | + | chr3.4:96994774-96994793 | MS.gene064668:CDS | 60.0% | |
| CGGATCTTACGAGGACGGAG+GGG | - | chr3.4:96994686-96994705 | None:intergenic | 60.0% | |
| CTGCTGCAAGCCATTGCCAG+TGG | - | chr3.4:96995509-96995528 | None:intergenic | 60.0% | |
| CTTGCCTCGGCCATCTCAGA+TGG | + | chr3.4:96995381-96995400 | MS.gene064668:CDS | 60.0% | |
| GCTGCTGCTGCTGCTGTTGA+TGG | - | chr3.4:96995546-96995565 | None:intergenic | 60.0% | |
| GCTGCTGTTGCCACTGGCAA+TGG | + | chr3.4:96995496-96995515 | MS.gene064668:CDS | 60.0% | |
| ! | CCGTCCGTTGGATTTTCCGG+CGG | - | chr3.4:96994777-96994796 | None:intergenic | 60.0% |
| ! | GCTGCTGCTGCTGTTGATGG+TGG | - | chr3.4:96995543-96995562 | None:intergenic | 60.0% |
| ! | GTTGGATTTTCCGGCGGTGG+TGG | - | chr3.4:96994771-96994790 | None:intergenic | 60.0% |
| ! | TCCGTTGGATTTTCCGGCGG+TGG | - | chr3.4:96994774-96994793 | None:intergenic | 60.0% |
| ! | TGGCTTGCAGCAGCATGAGC+TGG | + | chr3.4:96995516-96995535 | MS.gene064668:CDS | 60.0% |
| !! | CATTTTTGTGGCGGGGGCGT+TGG | - | chr3.4:96994663-96994682 | None:intergenic | 60.0% |
| !!! | CGGAGGGGCATTTTTGTGGC+GGG | - | chr3.4:96994671-96994690 | None:intergenic | 60.0% |
| !!! | GAGGGGCATTTTTGTGGCGG+GGG | - | chr3.4:96994669-96994688 | None:intergenic | 60.0% |
| !!! | GGAGGGGCATTTTTGTGGCG+GGG | - | chr3.4:96994670-96994689 | None:intergenic | 60.0% |
| GCTCTATGCGGCGGTGAAGC+TGG | + | chr3.4:96995058-96995077 | MS.gene064668:CDS | 65.0% | |
| TTCGACGGAGTCGACAGCGG+TGG | - | chr3.4:96994594-96994613 | None:intergenic | 65.0% | |
| !! | CCGGCGGTGGTGGAATTGGT+TGG | - | chr3.4:96994761-96994780 | None:intergenic | 65.0% |
| GACGGAGTCGACAGCGGTGG+TGG | - | chr3.4:96994591-96994610 | None:intergenic | 70.0% | |
| ! | GGAGTCGACAGCGGTGGTGG+CGG | - | chr3.4:96994588-96994607 | None:intergenic | 70.0% |
| !! | GCGGGGGCGTTGGTGCGTGA+TGG | - | chr3.4:96994653-96994672 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96994518 | 96995621 | 96994518 | ID=MS.gene064668 |
| chr3.4 | mRNA | 96994518 | 96995621 | 96994518 | ID=MS.gene064668.t1;Parent=MS.gene064668 |
| chr3.4 | exon | 96994518 | 96995621 | 96994518 | ID=MS.gene064668.t1.exon1;Parent=MS.gene064668.t1 |
| chr3.4 | CDS | 96994518 | 96995621 | 96994518 | ID=cds.MS.gene064668.t1;Parent=MS.gene064668.t1 |
| Gene Sequence |
| Protein sequence |
