AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42339

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42339.t1 MTR_3g111890 93.243 370 22 1 1 367 1 370 0.0 660
MS.gene42339.t1 MTR_3g111890 93.243 370 22 1 1 367 1 370 0.0 659
MS.gene42339.t1 MTR_5g020300 55.399 213 93 1 111 321 59 271 6.58e-86 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42339.t1 AT1G19480 61.972 355 115 6 15 367 41 377 4.24e-146 418
MS.gene42339.t1 AT1G19480 61.972 355 115 6 15 367 41 377 6.00e-146 418
MS.gene42339.t1 AT1G75230 60.789 380 114 5 6 367 24 386 7.68e-146 418
MS.gene42339.t1 AT1G75230 60.789 380 114 5 6 367 24 386 7.73e-146 418
MS.gene42339.t1 AT3G50880 54.152 277 90 4 46 320 29 270 2.02e-99 296

Find 113 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAACAGCTTCGTCAAAT+TGG 0.169969 3.2:+89326064 MS.gene42339:CDS
TGGTGGAATTGGTTGGCTTT+AGG 0.180405 3.2:-89325703 None:intergenic
CTTCGTCAAATTGGGGTTTC+TGG 0.192533 3.2:+89326073 MS.gene42339:CDS
TGATTCCGCTATTGTAAATA+TGG 0.193076 3.2:+89326153 MS.gene42339:CDS
TATGAATAACATGTTTAATA+TGG 0.206711 3.2:+89326546 MS.gene42339:CDS
ACTATGCTTACTATGGTTAA+TGG 0.221809 3.2:+89326193 MS.gene42339:CDS
GGTGGAATTGGTTGGCTTTA+GGG 0.224070 3.2:-89325702 None:intergenic
CTCAACAGCTTCGTCAAATT+GGG 0.256135 3.2:+89326065 MS.gene42339:CDS
GCTGCTGTTGCCACTGGCAA+TGG 0.292196 3.2:+89326448 MS.gene42339:CDS
AGCTAGTTATCTTCATGATT+TGG 0.297314 3.2:+89326102 MS.gene42339:CDS
TTATTCATAGGATCCATAAT+TGG 0.299949 3.2:-89326532 None:intergenic
CTATGCTTACTATGGTTAAT+GGG 0.309757 3.2:+89326194 MS.gene42339:CDS
TGGTTAATGGGATTGGTTCT+TGG 0.310260 3.2:+89326206 MS.gene42339:CDS
GCATTCACAACAACCAATTA+TGG 0.336085 3.2:+89326519 MS.gene42339:CDS
TTGGGTCGGGTGAGACCTTT+CGG 0.350316 3.2:-89325655 None:intergenic
ATATTAAACATGTTATTCAT+AGG 0.364793 3.2:-89326544 None:intergenic
CTTATCGTTCGGTTGCTTCA+TGG 0.372094 3.2:+89326380 MS.gene42339:CDS
AGCAATAAACCGGGTATAGA+TGG 0.372851 3.2:-89325990 None:intergenic
ATGAATAACATGTTTAATAT+GGG 0.373528 3.2:+89326547 MS.gene42339:CDS
CTTACTATGGTTAATGGGAT+TGG 0.385045 3.2:+89326199 MS.gene42339:CDS
ATTGAGATTCGGAGGTTGTT+GGG 0.390972 3.2:-89325673 None:intergenic
GGTACAAGATACTACGGGTT+AGG 0.395255 3.2:-89325940 None:intergenic
GATTCGGAGGTTGTTGGGTC+GGG 0.407111 3.2:-89325668 None:intergenic
TGGCTTGCAGCAGCATGAGC+TGG 0.409325 3.2:+89326468 MS.gene42339:CDS
CGAACACCAAGATCATTAAT+CGG 0.413843 3.2:-89326277 None:intergenic
GTTAGGGCAAGAACATTATC+AGG 0.416123 3.2:-89326040 None:intergenic
GACGAAGCTGTTGAGCAGTT+AGG 0.418751 3.2:-89326057 None:intergenic
ACCCCTTGTGGTTGTGGCTG+AGG 0.426942 3.2:-89325494 None:intergenic
ACGAAGCTGTTGAGCAGTTA+GGG 0.427388 3.2:-89326056 None:intergenic
CGATTAATGATCTTGGTGTT+CGG 0.428190 3.2:+89326278 MS.gene42339:CDS
GTTCTTCCGATTAATGATCT+TGG 0.429181 3.2:+89326271 MS.gene42339:CDS
ATGATCTTGGTGTTCGGAAA+GGG 0.431899 3.2:+89326284 MS.gene42339:CDS
TAGGGTTTCCGATTGAGATT+CGG 0.437075 3.2:-89325684 None:intergenic
ACTGCTGCTGCTGTTGCCAC+TGG 0.440661 3.2:+89326442 MS.gene42339:CDS
ATTGCTCAGTTCGGATTCTA+CGG 0.445751 3.2:-89325576 None:intergenic
CCGGCGGTGGTGGAATTGGT+TGG 0.451771 3.2:-89325710 None:intergenic
GCTCTATGCGGCGGTGAAGC+TGG 0.455065 3.2:+89326010 MS.gene42339:CDS
TCATTAATCGGAAGAACATC+AGG 0.455995 3.2:-89326265 None:intergenic
CGGCTTTAAAAGCGAGTTGT+TGG 0.456722 3.2:-89325961 None:intergenic
TTAGGGCAAGGAATGGAGTC+TGG 0.460253 3.2:-89325922 None:intergenic
TGATGGAACATTGCTCAGTT+CGG 0.471327 3.2:-89325585 None:intergenic
AGATTCGGAGGTTGTTGGGT+CGG 0.473762 3.2:-89325669 None:intergenic
GAAGAAACCCCTTGTGGTTG+TGG 0.474078 3.2:-89325500 None:intergenic
GATTGAGATTCGGAGGTTGT+TGG 0.484783 3.2:-89325674 None:intergenic
AACAACCTCCGAATCTCAAT+CGG 0.488511 3.2:+89325676 MS.gene42339:CDS
CGGTTGCTTCATGGTATATG+TGG 0.491099 3.2:+89326389 MS.gene42339:CDS
GACGGAGTCGACAGCGGTGG+TGG 0.492448 3.2:-89325540 None:intergenic
CGCCGCATAGAGCAATAAAC+CGG 0.498184 3.2:-89326000 None:intergenic
GTGGAGGTTTGTTGAAGCGA+AGG 0.503950 3.2:+89326408 MS.gene42339:CDS
GAAGTGGAAGCCTTATCGTT+CGG 0.505451 3.2:+89326369 MS.gene42339:CDS
GCTGCTGCTGCTGTTGATGG+TGG 0.507705 3.2:-89326492 None:intergenic
TGGAGGTTTGTTGAAGCGAA+GGG 0.516701 3.2:+89326409 MS.gene42339:CDS
CTTGCCTCGGCCATCTCAGA+TGG 0.518209 3.2:+89326333 MS.gene42339:CDS
ATCATCCATATTTACAATAG+CGG 0.520609 3.2:-89326158 None:intergenic
ACAATTGAGGTTCGTTGTTG+TGG 0.522531 3.2:-89325770 None:intergenic
TTGCTCAGTTCGGATTCTAC+GGG 0.522751 3.2:-89325575 None:intergenic
GTTATCTTCATGATTTGGCT+AGG 0.524825 3.2:+89326107 MS.gene42339:CDS
GCAACAGCAGCAGCAGTTGA+AGG 0.531886 3.2:-89326436 None:intergenic
GGAGTCGACAGCGGTGGTGG+CGG 0.536044 3.2:-89325537 None:intergenic
AATGATCTTGGTGTTCGGAA+AGG 0.537519 3.2:+89326283 MS.gene42339:CDS
CATGAAGCAACCGAACGATA+AGG 0.537784 3.2:-89326379 None:intergenic
GTGCGAAGGTGAAGTTGAGA+TGG 0.543548 3.2:+89325820 MS.gene42339:CDS
TGGCTAGGAAGTATCAGAAT+GGG 0.545890 3.2:+89326122 MS.gene42339:CDS
GTACAAGATACTACGGGTTA+GGG 0.549172 3.2:-89325939 None:intergenic
GGTGGCGGAGATTGTGTTGT+CGG 0.551572 3.2:-89325522 None:intergenic
GTTGTTGGTACAAGATACTA+CGG 0.551894 3.2:-89325946 None:intergenic
TTGCTTCATGGTATATGTGG+AGG 0.557460 3.2:+89326392 MS.gene42339:CDS
TCGGATCTTACGAGGACGGA+GGG 0.560273 3.2:-89325636 None:intergenic
TTGGCTAGGAAGTATCAGAA+TGG 0.561670 3.2:+89326121 MS.gene42339:CDS
TTGTTCCGAAAATTGTAGCT+AGG 0.562008 3.2:+89325789 MS.gene42339:CDS
ATAATCTAGATGACTTGCCT+CGG 0.562183 3.2:+89326320 MS.gene42339:CDS
TCAACAGCTTCGTCAAATTG+GGG 0.564716 3.2:+89326066 MS.gene42339:CDS
CCGGGTATAGATGGAAGTAC+CGG 0.564853 3.2:-89325981 None:intergenic
TGATCTTGGTGTTCGGAAAG+GGG 0.566268 3.2:+89326285 MS.gene42339:CDS
CCGGTACTTCCATCTATACC+CGG 0.576685 3.2:+89325981 MS.gene42339:CDS
TGGATCAATTATGTGAGAAG+TGG 0.576910 3.2:+89326353 MS.gene42339:CDS
CATAATTGATCCATCTGAGA+TGG 0.576912 3.2:-89326343 None:intergenic
CTACGGGTTAGGGCAAGGAA+TGG 0.578814 3.2:-89325929 None:intergenic
CAACGGACGGAACAACAAAA+CGG 0.582839 3.2:+89325739 MS.gene42339:CDS
ATTGAGGTTCGTTGTTGTGG+TGG 0.584929 3.2:-89325767 None:intergenic
GCTAGGTCACTTTCGTGCGA+AGG 0.586188 3.2:+89325806 MS.gene42339:CDS
AGATACTACGGGTTAGGGCA+AGG 0.587198 3.2:-89325934 None:intergenic
CCAACCAATTCCACCACCGC+CGG 0.587677 3.2:+89325710 MS.gene42339:CDS
TACGGGGATAATAGTTTCGA+CGG 0.589338 3.2:-89325558 None:intergenic
CCGCCGGAAAATCCAACGGA+CGG 0.590648 3.2:+89325726 MS.gene42339:CDS
CGATGAGAGGTGATAAGAGT+GGG 0.592687 3.2:-89325868 None:intergenic
CAACCTCAGCCACAACCACA+AGG 0.593857 3.2:+89325491 MS.gene42339:CDS
TGAATAACATGTTTAATATG+GGG 0.599833 3.2:+89326548 MS.gene42339:CDS
GGTTTCCGATTGAGATTCGG+AGG 0.602513 3.2:-89325681 None:intergenic
ACCTCAGCCACAACCACAAG+GGG 0.604739 3.2:+89325493 MS.gene42339:CDS
TGATCCATCTGAGATGGCCG+AGG 0.610828 3.2:-89326337 None:intergenic
CTGCTGCAAGCCATTGCCAG+TGG 0.628730 3.2:-89326458 None:intergenic
GAGACCTTTCGGATCTTACG+AGG 0.632398 3.2:-89325644 None:intergenic
AGAGTGGGTCTGCGGTACGA+AGG 0.640787 3.2:-89325853 None:intergenic
TTCGGATCTTACGAGGACGG+AGG 0.648070 3.2:-89325637 None:intergenic
CGGTTTATTGCTCTATGCGG+CGG 0.648731 3.2:+89326001 MS.gene42339:CDS
TTGTTGGTACAAGATACTAC+GGG 0.649339 3.2:-89325945 None:intergenic
AACCTCAGCCACAACCACAA+GGG 0.649650 3.2:+89325492 MS.gene42339:CDS
AGGTGATAAGAGTGGGTCTG+CGG 0.654092 3.2:-89325861 None:intergenic
AGTTTCGACGGAGTCGACAG+CGG 0.661441 3.2:-89325546 None:intergenic
CCGTCCTCGTAAGATCCGAA+AGG 0.662065 3.2:+89325640 MS.gene42339:CDS
ACCACCGCCGGAAAATCCAA+CGG 0.663130 3.2:+89325722 MS.gene42339:CDS
CCTTTCGGATCTTACGAGGA+CGG 0.664581 3.2:-89325640 None:intergenic
TTCGACGGAGTCGACAGCGG+TGG 0.669382 3.2:-89325543 None:intergenic
TGGAAATTATCAAACGTAGG+TGG 0.669577 3.2:-89325902 None:intergenic
TGCTCAGTTCGGATTCTACG+GGG 0.671223 3.2:-89325574 None:intergenic
TCGATGAGAGGTGATAAGAG+TGG 0.675819 3.2:-89325869 None:intergenic
ACCCGGTTTATTGCTCTATG+CGG 0.679051 3.2:+89325998 MS.gene42339:CDS
CGGATCTTACGAGGACGGAG+GGG 0.706604 3.2:-89325635 None:intergenic
GGTTGATGAATGTCGATGAG+AGG 0.708425 3.2:-89325881 None:intergenic
TTGTCGGAAGAAACCCCTTG+TGG 0.713634 3.2:-89325506 None:intergenic
GCCGCATAGAGCAATAAACC+GGG 0.722126 3.2:-89325999 None:intergenic
GTCTGGAAATTATCAAACGT+AGG 0.725407 3.2:-89325905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAACATGTTATTCAT+AGG - chr3.2:89326547-89326566 None:intergenic 15.0%
!! ATGAATAACATGTTTAATAT+GGG + chr3.2:89326547-89326566 MS.gene42339:CDS 15.0%
!! TATGAATAACATGTTTAATA+TGG + chr3.2:89326546-89326565 MS.gene42339:CDS 15.0%
!! TGAATAACATGTTTAATATG+GGG + chr3.2:89326548-89326567 MS.gene42339:CDS 20.0%
! ATCATCCATATTTACAATAG+CGG - chr3.2:89326161-89326180 None:intergenic 25.0%
! TTATTCATAGGATCCATAAT+TGG - chr3.2:89326535-89326554 None:intergenic 25.0%
ACTATGCTTACTATGGTTAA+TGG + chr3.2:89326193-89326212 MS.gene42339:CDS 30.0%
AGCTAGTTATCTTCATGATT+TGG + chr3.2:89326102-89326121 MS.gene42339:CDS 30.0%
CTATGCTTACTATGGTTAAT+GGG + chr3.2:89326194-89326213 MS.gene42339:CDS 30.0%
TGATTCCGCTATTGTAAATA+TGG + chr3.2:89326153-89326172 MS.gene42339:CDS 30.0%
! TACAATTTTCGGAACAATTG+AGG - chr3.2:89325786-89325805 None:intergenic 30.0%
CATAATTGATCCATCTGAGA+TGG - chr3.2:89326346-89326365 None:intergenic 35.0%
CGAACACCAAGATCATTAAT+CGG - chr3.2:89326280-89326299 None:intergenic 35.0%
CTTACTATGGTTAATGGGAT+TGG + chr3.2:89326199-89326218 MS.gene42339:CDS 35.0%
GCATTCACAACAACCAATTA+TGG + chr3.2:89326519-89326538 MS.gene42339:CDS 35.0%
GTCTGGAAATTATCAAACGT+AGG - chr3.2:89325908-89325927 None:intergenic 35.0%
GTTCTTCCGATTAATGATCT+TGG + chr3.2:89326271-89326290 MS.gene42339:CDS 35.0%
GTTGTTGGTACAAGATACTA+CGG - chr3.2:89325949-89325968 None:intergenic 35.0%
TCATTAATCGGAAGAACATC+AGG - chr3.2:89326268-89326287 None:intergenic 35.0%
TGGAAATTATCAAACGTAGG+TGG - chr3.2:89325905-89325924 None:intergenic 35.0%
TGGATCAATTATGTGAGAAG+TGG + chr3.2:89326353-89326372 MS.gene42339:CDS 35.0%
TTGTTCCGAAAATTGTAGCT+AGG + chr3.2:89325789-89325808 MS.gene42339:CDS 35.0%
TTGTTGGTACAAGATACTAC+GGG - chr3.2:89325948-89325967 None:intergenic 35.0%
! AGTGACCTAGCTACAATTTT+CGG - chr3.2:89325797-89325816 None:intergenic 35.0%
! ATAATCTAGATGACTTGCCT+CGG + chr3.2:89326320-89326339 MS.gene42339:CDS 35.0%
! GCTTTTCACTATGCTTACTA+TGG + chr3.2:89326186-89326205 MS.gene42339:CDS 35.0%
! GTTATCTTCATGATTTGGCT+AGG + chr3.2:89326107-89326126 MS.gene42339:CDS 35.0%
!! CGATTAATGATCTTGGTGTT+CGG + chr3.2:89326278-89326297 MS.gene42339:CDS 35.0%
AACAACCTCCGAATCTCAAT+CGG + chr3.2:89325676-89325695 MS.gene42339:CDS 40.0%
ACAATTGAGGTTCGTTGTTG+TGG - chr3.2:89325773-89325792 None:intergenic 40.0%
AGCAATAAACCGGGTATAGA+TGG - chr3.2:89325993-89326012 None:intergenic 40.0%
ATTGAGATTCGGAGGTTGTT+GGG - chr3.2:89325676-89325695 None:intergenic 40.0%
ATTGCTCAGTTCGGATTCTA+CGG - chr3.2:89325579-89325598 None:intergenic 40.0%
CTCAACAGCTTCGTCAAATT+GGG + chr3.2:89326065-89326084 MS.gene42339:CDS 40.0%
GTTAGGGCAAGAACATTATC+AGG - chr3.2:89326043-89326062 None:intergenic 40.0%
TACGGGGATAATAGTTTCGA+CGG - chr3.2:89325561-89325580 None:intergenic 40.0%
TAGGGTTTCCGATTGAGATT+CGG - chr3.2:89325687-89325706 None:intergenic 40.0%
TCAACAGCTTCGTCAAATTG+GGG + chr3.2:89326066-89326085 MS.gene42339:CDS 40.0%
TGATGGAACATTGCTCAGTT+CGG - chr3.2:89325588-89325607 None:intergenic 40.0%
TTGCTTCATGGTATATGTGG+AGG + chr3.2:89326392-89326411 MS.gene42339:CDS 40.0%
! GTACAAGATACTACGGGTTA+GGG - chr3.2:89325942-89325961 None:intergenic 40.0%
!! AATGATCTTGGTGTTCGGAA+AGG + chr3.2:89326283-89326302 MS.gene42339:CDS 40.0%
!! ATGATCTTGGTGTTCGGAAA+GGG + chr3.2:89326284-89326303 MS.gene42339:CDS 40.0%
!! TGGCTAGGAAGTATCAGAAT+GGG + chr3.2:89326122-89326141 MS.gene42339:CDS 40.0%
!! TGGTTAATGGGATTGGTTCT+TGG + chr3.2:89326206-89326225 MS.gene42339:CDS 40.0%
!! TTGGCTAGGAAGTATCAGAA+TGG + chr3.2:89326121-89326140 MS.gene42339:CDS 40.0%
!!! CAACAACTCGCTTTTAAAGC+CGG + chr3.2:89325962-89325981 MS.gene42339:CDS 40.0%
ACCCGGTTTATTGCTCTATG+CGG + chr3.2:89325998-89326017 MS.gene42339:CDS 45.0%
ACGAAGCTGTTGAGCAGTTA+GGG - chr3.2:89326059-89326078 None:intergenic 45.0%
ATTGAGGTTCGTTGTTGTGG+TGG - chr3.2:89325770-89325789 None:intergenic 45.0%
CAACGGACGGAACAACAAAA+CGG + chr3.2:89325739-89325758 MS.gene42339:CDS 45.0%
CATGAAGCAACCGAACGATA+AGG - chr3.2:89326382-89326401 None:intergenic 45.0%
CGATGAGAGGTGATAAGAGT+GGG - chr3.2:89325871-89325890 None:intergenic 45.0%
CGGTTGCTTCATGGTATATG+TGG + chr3.2:89326389-89326408 MS.gene42339:CDS 45.0%
CTTATCGTTCGGTTGCTTCA+TGG + chr3.2:89326380-89326399 MS.gene42339:CDS 45.0%
CTTCGTCAAATTGGGGTTTC+TGG + chr3.2:89326073-89326092 MS.gene42339:CDS 45.0%
GATTGAGATTCGGAGGTTGT+TGG - chr3.2:89325677-89325696 None:intergenic 45.0%
GCTCAACAGCTTCGTCAAAT+TGG + chr3.2:89326064-89326083 MS.gene42339:CDS 45.0%
GGTACAAGATACTACGGGTT+AGG - chr3.2:89325943-89325962 None:intergenic 45.0%
TCGATGAGAGGTGATAAGAG+TGG - chr3.2:89325872-89325891 None:intergenic 45.0%
TTGCTCAGTTCGGATTCTAC+GGG - chr3.2:89325578-89325597 None:intergenic 45.0%
! GAAGTGGAAGCCTTATCGTT+CGG + chr3.2:89326369-89326388 MS.gene42339:CDS 45.0%
!! CGGCTTTAAAAGCGAGTTGT+TGG - chr3.2:89325964-89325983 None:intergenic 45.0%
!! GGTGGAATTGGTTGGCTTTA+GGG - chr3.2:89325705-89325724 None:intergenic 45.0%
!! GGTTGATGAATGTCGATGAG+AGG - chr3.2:89325884-89325903 None:intergenic 45.0%
!! TGATCTTGGTGTTCGGAAAG+GGG + chr3.2:89326285-89326304 MS.gene42339:CDS 45.0%
!! TGGAGGTTTGTTGAAGCGAA+GGG + chr3.2:89326409-89326428 MS.gene42339:CDS 45.0%
!! TGGTGGAATTGGTTGGCTTT+AGG - chr3.2:89325706-89325725 None:intergenic 45.0%
AACCTCAGCCACAACCACAA+GGG + chr3.2:89325492-89325511 MS.gene42339:CDS 50.0%
AGATTCGGAGGTTGTTGGGT+CGG - chr3.2:89325672-89325691 None:intergenic 50.0%
AGGTGATAAGAGTGGGTCTG+CGG - chr3.2:89325864-89325883 None:intergenic 50.0%
CCGGTACTTCCATCTATACC+CGG + chr3.2:89325981-89326000 MS.gene42339:CDS 50.0%
CCTTTCGGATCTTACGAGGA+CGG - chr3.2:89325643-89325662 None:intergenic 50.0%
CGCCGCATAGAGCAATAAAC+CGG - chr3.2:89326003-89326022 None:intergenic 50.0%
CGGTTTATTGCTCTATGCGG+CGG + chr3.2:89326001-89326020 MS.gene42339:CDS 50.0%
GAAGAAACCCCTTGTGGTTG+TGG - chr3.2:89325503-89325522 None:intergenic 50.0%
GACGAAGCTGTTGAGCAGTT+AGG - chr3.2:89326060-89326079 None:intergenic 50.0%
GAGACCTTTCGGATCTTACG+AGG - chr3.2:89325647-89325666 None:intergenic 50.0%
GCCGCATAGAGCAATAAACC+GGG - chr3.2:89326002-89326021 None:intergenic 50.0%
GGTTTCCGATTGAGATTCGG+AGG - chr3.2:89325684-89325703 None:intergenic 50.0%
GTGCGAAGGTGAAGTTGAGA+TGG + chr3.2:89325820-89325839 MS.gene42339:CDS 50.0%
TGCTCAGTTCGGATTCTACG+GGG - chr3.2:89325577-89325596 None:intergenic 50.0%
TTAGGGCAAGGAATGGAGTC+TGG - chr3.2:89325925-89325944 None:intergenic 50.0%
TTGTCGGAAGAAACCCCTTG+TGG - chr3.2:89325509-89325528 None:intergenic 50.0%
! CCGGGTATAGATGGAAGTAC+CGG - chr3.2:89325984-89326003 None:intergenic 50.0%
! GTTCCGTCCGTTGGATTTTC+CGG - chr3.2:89325732-89325751 None:intergenic 50.0%
!! AGATACTACGGGTTAGGGCA+AGG - chr3.2:89325937-89325956 None:intergenic 50.0%
!! GTGGAGGTTTGTTGAAGCGA+AGG + chr3.2:89326408-89326427 MS.gene42339:CDS 50.0%
!!! CGTTTTGTTGTTCCGTCCGT+TGG - chr3.2:89325741-89325760 None:intergenic 50.0%
ACCACCGCCGGAAAATCCAA+CGG + chr3.2:89325722-89325741 MS.gene42339:CDS 55.0%
ACCTCAGCCACAACCACAAG+GGG + chr3.2:89325493-89325512 MS.gene42339:CDS 55.0%
AGTTTCGACGGAGTCGACAG+CGG - chr3.2:89325549-89325568 None:intergenic 55.0%
CAACCTCAGCCACAACCACA+AGG + chr3.2:89325491-89325510 MS.gene42339:CDS 55.0%
CCGTCCTCGTAAGATCCGAA+AGG + chr3.2:89325640-89325659 MS.gene42339:CDS 55.0%
GATTCGGAGGTTGTTGGGTC+GGG - chr3.2:89325671-89325690 None:intergenic 55.0%
GCAACAGCAGCAGCAGTTGA+AGG - chr3.2:89326439-89326458 None:intergenic 55.0%
TCGGATCTTACGAGGACGGA+GGG - chr3.2:89325639-89325658 None:intergenic 55.0%
TTCGGATCTTACGAGGACGG+AGG - chr3.2:89325640-89325659 None:intergenic 55.0%
TTGGGTCGGGTGAGACCTTT+CGG - chr3.2:89325658-89325677 None:intergenic 55.0%
! GCTAGGTCACTTTCGTGCGA+AGG + chr3.2:89325806-89325825 MS.gene42339:CDS 55.0%
! TGATCCATCTGAGATGGCCG+AGG - chr3.2:89326340-89326359 None:intergenic 55.0%
!! CTACGGGTTAGGGCAAGGAA+TGG - chr3.2:89325932-89325951 None:intergenic 55.0%
!! GGTGGCGGAGATTGTGTTGT+CGG - chr3.2:89325525-89325544 None:intergenic 55.0%
!!! ACGGAGGGGCATTTTTGTGG+CGG - chr3.2:89325624-89325643 None:intergenic 55.0%
!!! AGGACGGAGGGGCATTTTTG+TGG - chr3.2:89325627-89325646 None:intergenic 55.0%
!!! TTTTCCGGCGGTGGTGGAAT+TGG - chr3.2:89325717-89325736 None:intergenic 55.0%
ACCCCTTGTGGTTGTGGCTG+AGG - chr3.2:89325497-89325516 None:intergenic 60.0%
ACTGCTGCTGCTGTTGCCAC+TGG + chr3.2:89326442-89326461 MS.gene42339:CDS 60.0%
AGAGTGGGTCTGCGGTACGA+AGG - chr3.2:89325856-89325875 None:intergenic 60.0%
CCAACCAATTCCACCACCGC+CGG + chr3.2:89325710-89325729 MS.gene42339:CDS 60.0%
CCGCCGGAAAATCCAACGGA+CGG + chr3.2:89325726-89325745 MS.gene42339:CDS 60.0%
CGGATCTTACGAGGACGGAG+GGG - chr3.2:89325638-89325657 None:intergenic 60.0%
CTGCTGCAAGCCATTGCCAG+TGG - chr3.2:89326461-89326480 None:intergenic 60.0%
CTTGCCTCGGCCATCTCAGA+TGG + chr3.2:89326333-89326352 MS.gene42339:CDS 60.0%
GCTGCTGCTGCTGCTGTTGA+TGG - chr3.2:89326498-89326517 None:intergenic 60.0%
GCTGCTGTTGCCACTGGCAA+TGG + chr3.2:89326448-89326467 MS.gene42339:CDS 60.0%
! CCGTCCGTTGGATTTTCCGG+CGG - chr3.2:89325729-89325748 None:intergenic 60.0%
! GCTGCTGCTGCTGTTGATGG+TGG - chr3.2:89326495-89326514 None:intergenic 60.0%
! GTTGGATTTTCCGGCGGTGG+TGG - chr3.2:89325723-89325742 None:intergenic 60.0%
! TCCGTTGGATTTTCCGGCGG+TGG - chr3.2:89325726-89325745 None:intergenic 60.0%
! TGGCTTGCAGCAGCATGAGC+TGG + chr3.2:89326468-89326487 MS.gene42339:CDS 60.0%
!! CATTTTTGTGGCGGGGGCGT+TGG - chr3.2:89325615-89325634 None:intergenic 60.0%
!!! CGGAGGGGCATTTTTGTGGC+GGG - chr3.2:89325623-89325642 None:intergenic 60.0%
!!! GAGGGGCATTTTTGTGGCGG+GGG - chr3.2:89325621-89325640 None:intergenic 60.0%
!!! GGAGGGGCATTTTTGTGGCG+GGG - chr3.2:89325622-89325641 None:intergenic 60.0%
GCTCTATGCGGCGGTGAAGC+TGG + chr3.2:89326010-89326029 MS.gene42339:CDS 65.0%
TTCGACGGAGTCGACAGCGG+TGG - chr3.2:89325546-89325565 None:intergenic 65.0%
!! CCGGCGGTGGTGGAATTGGT+TGG - chr3.2:89325713-89325732 None:intergenic 65.0%
GACGGAGTCGACAGCGGTGG+TGG - chr3.2:89325543-89325562 None:intergenic 70.0%
! GGAGTCGACAGCGGTGGTGG+CGG - chr3.2:89325540-89325559 None:intergenic 70.0%
!! GCGGGGGCGTTGGTGCGTGA+TGG - chr3.2:89325605-89325624 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 89325470 89326573 89325470 ID=MS.gene42339
chr3.2 mRNA 89325470 89326573 89325470 ID=MS.gene42339.t1;Parent=MS.gene42339
chr3.2 exon 89325470 89326573 89325470 ID=MS.gene42339.t1.exon1;Parent=MS.gene42339.t1
chr3.2 CDS 89325470 89326573 89325470 ID=cds.MS.gene42339.t1;Parent=MS.gene42339.t1
Gene Sequence

>MS.gene42339

ATGGGCGAAGACGCACAACAACAACCTCAGCCACAACCACAAGGGGTTTCTTCCGACAACACAATCTCCGCCACCACCGCTGTCGACTCCGTCGAAACTATTATCCCCGTAGAATCCGAACTGAGCAATGTTCCATCACGCACCAACGCCCCCGCCACAAAAATGCCCCTCCGTCCTCGTAAGATCCGAAAGGTCTCACCCGACCCAACAACCTCCGAATCTCAATCGGAAACCCTAAAGCCAACCAATTCCACCACCGCCGGAAAATCCAACGGACGGAACAACAAAACGGTTCAACCACCACAACAACGAACCTCAATTGTTCCGAAAATTGTAGCTAGGTCACTTTCGTGCGAAGGTGAAGTTGAGATGGCAATTCGTTACCTTCGTACCGCAGACCCACTCTTATCACCTCTCATCGACATTCATCAACCACCTACGTTTGATAATTTCCAGACTCCATTCCTTGCCCTAACCCGTAGTATCTTGTACCAACAACTCGCTTTTAAAGCCGGTACTTCCATCTATACCCGGTTTATTGCTCTATGCGGCGGTGAAGCTGGTGTTGTTCCTGATAATGTTCTTGCCCTAACTGCTCAACAGCTTCGTCAAATTGGGGTTTCTGGTAGAAAAGCTAGTTATCTTCATGATTTGGCTAGGAAGTATCAGAATGGGATACTTTCTGATTCCGCTATTGTAAATATGGATGATAAATCGCTTTTCACTATGCTTACTATGGTTAATGGGATTGGTTCTTGGTCTGTTCATATGTTTATGATTTTCTCGCTGCATAGACCTGATGTTCTTCCGATTAATGATCTTGGTGTTCGGAAAGGGGTTCAGATTCTTTATAATCTAGATGACTTGCCTCGGCCATCTCAGATGGATCAATTATGTGAGAAGTGGAAGCCTTATCGTTCGGTTGCTTCATGGTATATGTGGAGGTTTGTTGAAGCGAAGGGAAGTCCTTCAACTGCTGCTGCTGTTGCCACTGGCAATGGCTTGCAGCAGCATGAGCTGGACCACCATCAACAGCAGCAGCAGCAGCAGCATTCACAACAACCAATTATGGATCCTATGAATAACATGTTTAATATGGGGTAA
Protein sequence

>MS.gene42339.t1

MGEDAQQQPQPQPQGVSSDNTISATTAVDSVETIIPVESELSNVPSRTNAPATKMPLRPRKIRKVSPDPTTSESQSETLKPTNSTTAGKSNGRNNKTVQPPQQRTSIVPKIVARSLSCEGEVEMAIRYLRTADPLLSPLIDIHQPPTFDNFQTPFLALTRSILYQQLAFKAGTSIYTRFIALCGGEAGVVPDNVLALTAQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQILYNLDDLPRPSQMDQLCEKWKPYRSVASWYMWRFVEAKGSPSTAAAVATGNGLQQHELDHHQQQQQQQHSQQPIMDPMNNMFNMG