AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064688


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064688.t1 MTR_3g112160 99.342 304 2 0 1 304 1 304 0.0 628
MS.gene064688.t1 MTR_3g112160 99.138 232 2 0 1 232 1 232 7.34e-173 479
MS.gene064688.t1 MTR_1g022485 70.096 311 81 2 3 304 34 341 7.88e-160 451
MS.gene064688.t1 MTR_5g023110 36.571 175 104 4 131 303 141 310 5.53e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064688.t1 AT1G75380 74.545 275 69 1 29 303 33 306 6.88e-154 434
MS.gene064688.t1 AT1G75380 74.545 275 69 1 29 303 33 306 6.88e-154 434
MS.gene064688.t1 AT1G75380 74.545 275 69 1 29 303 33 306 6.88e-154 434
MS.gene064688.t1 AT1G75380 74.545 275 69 1 29 303 33 306 6.88e-154 434
MS.gene064688.t1 AT1G19660 73.188 276 72 2 29 303 36 310 1.66e-150 426
MS.gene064688.t1 AT1G19660 73.188 276 72 2 29 303 36 310 1.66e-150 426
MS.gene064688.t1 AT1G19660 72.826 276 73 2 29 303 36 310 1.55e-149 424
MS.gene064688.t1 AT5G66050 36.723 177 104 4 130 304 49 219 3.66e-23 96.7
MS.gene064688.t1 AT5G66050 36.723 177 104 4 130 304 143 313 7.00e-23 97.4
MS.gene064688.t1 AT5G66050 36.723 177 104 4 130 304 143 313 8.95e-23 97.4
MS.gene064688.t1 AT5G66050 34.239 184 113 4 130 311 143 320 2.07e-19 87.8

Find 80 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACAAGTCAACAAGTATT+TGG 0.238673 3.4:-97138480 MS.gene064688:CDS
AAAAGACATACAAACGATTA+TGG 0.245394 3.4:+97139463 None:intergenic
ACATGGCAAGAAAGGGAATT+AGG 0.247322 3.4:+97140615 None:intergenic
GTAGGTTTGAATGGATAAAA+TGG 0.329200 3.4:-97140751 None:intergenic
CGATCCAGTTCAGTAAATAA+TGG 0.329877 3.4:+97138389 None:intergenic
TCCATCTTCAACACAATTGC+AGG 0.355266 3.4:+97139509 None:intergenic
GTCCTCCATGAGGGCTGTTA+TGG 0.367780 3.4:+97139555 None:intergenic
CCCTCATGGAGGACTTCTTC+CGG 0.368244 3.4:-97139546 MS.gene064688:CDS
TTCAAATGGTAGTGGAAGTA+TGG 0.371169 3.4:-97140544 MS.gene064688:CDS
TGGCCCATTATTTACTGAAC+TGG 0.375188 3.4:-97138393 MS.gene064688:CDS
GAGGTGAAGAGTGGAGGAGA+TGG 0.376747 3.4:-97139620 MS.gene064688:CDS
TCATATTTACATGGCAAGAA+AGG 0.393581 3.4:+97140607 None:intergenic
TCAACACAAGGCTTACCATT+TGG 0.407225 3.4:+97138169 None:intergenic
AAAGACATACAAACGATTAT+GGG 0.408082 3.4:+97139464 None:intergenic
AAATACTTGTTGACTTGTAT+AGG 0.410743 3.4:+97138482 None:intergenic
AAGAGTTACTAAGAGAGTTC+AGG 0.417338 3.4:-97138935 MS.gene064688:CDS
GCGTTGATTGGTCCAATCAT+AGG 0.427412 3.4:+97140690 None:intergenic
GATGCCAAGTGTCTTGTTAA+TGG 0.431725 3.4:-97139294 MS.gene064688:CDS
CTACTACAACCAGCGTTGAT+TGG 0.432408 3.4:+97140678 None:intergenic
GGAATGAGAGTAATTGAATC+AGG 0.437048 3.4:-97138446 MS.gene064688:CDS
GATCCAGTTCAGTAAATAAT+GGG 0.438185 3.4:+97138390 None:intergenic
GCAGGATGTGGTGCATAATC+CGG 0.457419 3.4:+97139527 None:intergenic
AGGTGAAGAGTGGAGGAGAT+GGG 0.465253 3.4:-97139619 MS.gene064688:CDS
TGACTTATTTGCAGACCAAA+TGG 0.466130 3.4:-97138184 MS.gene064688:intron
GAAGGAGATGATTGACAAGA+TGG 0.467393 3.4:-97139097 MS.gene064688:CDS
AACTCATCTTCAAATGGTAG+TGG 0.476288 3.4:-97140552 MS.gene064688:CDS
CATATTTACATGGCAAGAAA+GGG 0.486267 3.4:+97140608 None:intergenic
TGCACTTTCTCATATTTACA+TGG 0.491468 3.4:+97140598 None:intergenic
AATTCTACTATTCTTGAAGC+AGG 0.491817 3.4:-97140486 MS.gene064688:intron
TGTGTAGTTGAGGTGAAGAG+TGG 0.494302 3.4:-97139629 MS.gene064688:intron
TTGAAGATGGAGGATGGAAC+TGG 0.494500 3.4:-97139497 MS.gene064688:CDS
GATAAAATGGTTTGTGTGAA+AGG 0.496281 3.4:-97140738 MS.gene064688:CDS
ACTCAGTCCCCTGGTTCAGA+TGG 0.500433 3.4:-97138413 MS.gene064688:CDS
AAGTATTTGGCTTACAGTGA+TGG 0.500663 3.4:-97138467 MS.gene064688:CDS
AAGTGTCTTGTTAATGGCAG+CGG 0.507255 3.4:-97139288 MS.gene064688:CDS
TGCGTCCATAACAGCCCTCA+TGG 0.507711 3.4:-97139560 MS.gene064688:CDS
AATAATGGGCCATCTGAACC+AGG 0.513864 3.4:+97138404 None:intergenic
GTGCAAAAGATTGAACTCCT+TGG 0.528331 3.4:+97138144 None:intergenic
AGTTTCAACTCATCTTCAAA+TGG 0.531934 3.4:-97140558 MS.gene064688:CDS
CAAAACTATTACCAGCGTCT+TGG 0.537387 3.4:+97138089 None:intergenic
ATCCAGCATTGGAATGTCGA+TGG 0.538707 3.4:-97137594 MS.gene064688:intron
AACTCCTTGGTTTCAACACA+AGG 0.539583 3.4:+97138157 None:intergenic
AGTGTTGCTATGCCTATGAT+TGG 0.546554 3.4:-97140702 MS.gene064688:CDS
ATGGGTTCATAGTCAAAATG+AGG 0.552865 3.4:-97139601 MS.gene064688:CDS
TGCTCAGCTATATCTTTCCA+AGG 0.554143 3.4:-97138902 MS.gene064688:intron
TCCTGCAATTGTGTTGAAGA+TGG 0.554227 3.4:-97139510 MS.gene064688:CDS
ATGAATTACCTTGCATCTGA+CGG 0.554836 3.4:+97138733 None:intergenic
TTCAACACAATTGCAGGATG+TGG 0.559028 3.4:+97139515 None:intergenic
AAGGAGATGATTGACAAGAT+GGG 0.563238 3.4:-97139096 MS.gene064688:CDS
TCCAGCATTGGAATGTCGAT+GGG 0.580170 3.4:-97137593 MS.gene064688:intron
AAACTGTCAACTCAGTCCCC+TGG 0.581648 3.4:-97138422 MS.gene064688:CDS
TTGTAGTAGAATTGAATTGT+GGG 0.582297 3.4:-97140664 MS.gene064688:CDS
TTCACTACTTGATATAAAGT+AGG 0.583362 3.4:+97139117 None:intergenic
GTTGTAGTAGAATTGAATTG+TGG 0.585443 3.4:-97140665 MS.gene064688:CDS
TACTTTATATCAAGTAGTGA+AGG 0.586601 3.4:-97139115 MS.gene064688:CDS
CATTATTTACTGAACTGGAT+CGG 0.591707 3.4:-97138388 MS.gene064688:intron
CAACATTGCCGTCAGATGCA+AGG 0.598286 3.4:-97138741 MS.gene064688:intron
TTCATAGTCAAAATGAGGGA+TGG 0.606214 3.4:-97139596 MS.gene064688:CDS
CCGGAAGAAGTCCTCCATGA+GGG 0.609077 3.4:+97139546 None:intergenic
AAGACATACAAACGATTATG+GGG 0.611378 3.4:+97139465 None:intergenic
AGTTACTAAGAGAGTTCAGG+AGG 0.616947 3.4:-97138932 MS.gene064688:CDS
GCTGCCATTAACAAGACACT+TGG 0.631772 3.4:+97139290 None:intergenic
GACTTATGAGTATACACAAG+GGG 0.633649 3.4:+97137532 None:intergenic
GTAGTTGAGGTGAAGAGTGG+AGG 0.641244 3.4:-97139626 MS.gene064688:intron
TGATAGCATCTGAAGGTCGA+AGG 0.644393 3.4:+97138762 None:intergenic
ATTGTGTTGAAGATGGAGGA+TGG 0.647763 3.4:-97139503 MS.gene064688:CDS
TGGGTTCATAGTCAAAATGA+GGG 0.648695 3.4:-97139600 MS.gene064688:CDS
TAAGCCTTGTGTTGAAACCA+AGG 0.655141 3.4:-97138161 MS.gene064688:CDS
GAAGAGCGCTACCAAGACGC+TGG 0.659837 3.4:-97138100 MS.gene064688:intron
ATGATTGGACCAATCAACGC+TGG 0.660475 3.4:-97140687 MS.gene064688:CDS
TAATGGGCCATCTGAACCAG+GGG 0.661956 3.4:+97138406 None:intergenic
TACACAAGGGGAGAAGCGAA+CGG 0.666819 3.4:+97137544 None:intergenic
GCAATGTTGATAGCATCTGA+AGG 0.668734 3.4:+97138755 None:intergenic
TGTAGTAGAATTGAATTGTG+GGG 0.671461 3.4:-97140663 MS.gene064688:CDS
AAGACTTATGAGTATACACA+AGG 0.674289 3.4:+97137530 None:intergenic
ATAATGGGCCATCTGAACCA+GGG 0.677787 3.4:+97138405 None:intergenic
TGCAATTGTGTTGAAGATGG+AGG 0.695717 3.4:-97139507 MS.gene064688:CDS
TCCGGAAGAAGTCCTCCATG+AGG 0.699210 3.4:+97139545 None:intergenic
AGACTTATGAGTATACACAA+GGG 0.729227 3.4:+97137531 None:intergenic
GTCCATAACAGCCCTCATGG+AGG 0.747707 3.4:-97139557 MS.gene064688:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATAAATAAT+TGG + chr3.4:97138166-97138185 None:intergenic 0.0%
!! ATAAAATAAAATAAATAATT+GGG + chr3.4:97138165-97138184 None:intergenic 0.0%
!!! ATGAAAATAAAATAGTTTTA+TGG + chr3.4:97137956-97137975 None:intergenic 10.0%
!!! TGAAAATAAAATAGTTTTAT+GGG + chr3.4:97137955-97137974 None:intergenic 10.0%
!!! ACAGTTACTTTAAAAAAAAA+TGG + chr3.4:97138530-97138549 None:intergenic 15.0%
!!! GTGAAAAATTGTTTTTTTAT+TGG - chr3.4:97137841-97137860 MS.gene064688:intron 15.0%
!!! TTATATAAGATAGCAAATTT+TGG - chr3.4:97140612-97140631 MS.gene064688:CDS 15.0%
!! ACCAAAATAATATATAGGAT+AGG + chr3.4:97138902-97138921 None:intergenic 20.0%
!! ACTACAATACAATTAAGATT+AGG + chr3.4:97139241-97139260 None:intergenic 20.0%
!! AGAGTAAAATAAAATTTCCA+AGG + chr3.4:97138583-97138602 None:intergenic 20.0%
!! ATTACTCATAAAAAAGTTGT+AGG + chr3.4:97138313-97138332 None:intergenic 20.0%
!! TATCTATACACTAAAGAAAT+TGG - chr3.4:97138348-97138367 MS.gene064688:intron 20.0%
!! TCATCACCAAAATAATATAT+AGG + chr3.4:97138907-97138926 None:intergenic 20.0%
!! TTGTTTATCAAAGATTTAAC+TGG - chr3.4:97139745-97139764 MS.gene064688:intron 20.0%
!!! GAAATTTTATTTTACTCTCA+TGG - chr3.4:97138585-97138604 MS.gene064688:intron 20.0%
!!! TATCATACAAGTTTACTTTT+TGG - chr3.4:97138874-97138893 MS.gene064688:intron 20.0%
!!! TCCTATCCTATATATTATTT+TGG - chr3.4:97138898-97138917 MS.gene064688:intron 20.0%
! AAAAGACATACAAACGATTA+TGG + chr3.4:97138809-97138828 None:intergenic 25.0%
! AAAGACATACAAACGATTAT+GGG + chr3.4:97138808-97138827 None:intergenic 25.0%
! AATTTGAACTATATCACTTG+AGG + chr3.4:97138451-97138470 None:intergenic 25.0%
! ATGGAGAATCAATAAAACAA+CGG + chr3.4:97138511-97138530 None:intergenic 25.0%
! GAAAATCAATAATGATTAGC+AGG + chr3.4:97140319-97140338 None:intergenic 25.0%
! GAGAATATGTTACAGAAAAA+CGG + chr3.4:97139089-97139108 None:intergenic 25.0%
! GTAAATTAATCACATGTGTA+TGG - chr3.4:97138221-97138240 MS.gene064688:intron 25.0%
! TAAAAAAGTTGTAGGTATAG+TGG + chr3.4:97138305-97138324 None:intergenic 25.0%
! TACTTTATATCAAGTAGTGA+AGG - chr3.4:97139154-97139173 MS.gene064688:intron 25.0%
! TATACAAGTCAACAAGTATT+TGG - chr3.4:97139789-97139808 MS.gene064688:intron 25.0%
! TCATATATGCTTAGTTTAGT+TGG - chr3.4:97137819-97137838 MS.gene064688:intron 25.0%
! TTCACTACTTGATATAAAGT+AGG + chr3.4:97139155-97139174 None:intergenic 25.0%
! TTGCATTAGTAGTAAAATGT+TGG - chr3.4:97139050-97139069 MS.gene064688:intron 25.0%
! TTGTAGTAGAATTGAATTGT+GGG - chr3.4:97137605-97137624 MS.gene064688:intron 25.0%
!! ACATTTTACTACTAATGCAA+TGG + chr3.4:97139050-97139069 None:intergenic 25.0%
!!! AAATACTTGTTGACTTGTAT+AGG + chr3.4:97139790-97139809 None:intergenic 25.0%
!!! GTATTACTTGTTTTTGGTAT+AGG - chr3.4:97139453-97139472 MS.gene064688:intron 25.0%
!!! GTGAAAATAAATTTGTTGTG+TGG - chr3.4:97138611-97138630 MS.gene064688:intron 25.0%
AAAACTTCTAGGTTCCATTT+AGG + chr3.4:97139682-97139701 None:intergenic 30.0%
AAGACATACAAACGATTATG+GGG + chr3.4:97138807-97138826 None:intergenic 30.0%
AAGACTTATGAGTATACACA+AGG + chr3.4:97140742-97140761 None:intergenic 30.0%
AATTCTACTATTCTTGAAGC+AGG - chr3.4:97137783-97137802 MS.gene064688:intron 30.0%
ACACTAATTACTAACTCATG+CGG + chr3.4:97137886-97137905 None:intergenic 30.0%
AGACTTATGAGTATACACAA+GGG + chr3.4:97140741-97140760 None:intergenic 30.0%
AGTATTCATAATCTCTGTTC+TGG - chr3.4:97139951-97139970 MS.gene064688:intron 30.0%
AGTTTCAACTCATCTTCAAA+TGG - chr3.4:97137711-97137730 MS.gene064688:intron 30.0%
ATAAATAATTGGGTCTGTAC+TGG + chr3.4:97138155-97138174 None:intergenic 30.0%
ATATAGTTCAAATTCCACCT+GGG - chr3.4:97138457-97138476 MS.gene064688:CDS 30.0%
ATTCATGATGCAACATAGAA+AGG + chr3.4:97138836-97138855 None:intergenic 30.0%
CAACCATATAGTTAGTTGTT+TGG + chr3.4:97139117-97139136 None:intergenic 30.0%
CATATTTACATGGCAAGAAA+GGG + chr3.4:97137664-97137683 None:intergenic 30.0%
CATTATTTACTGAACTGGAT+CGG - chr3.4:97139881-97139900 MS.gene064688:intron 30.0%
GAACCAAACAACTAACTATA+TGG - chr3.4:97139111-97139130 MS.gene064688:CDS 30.0%
GAATTTGATCCAAAACTTCT+AGG + chr3.4:97139693-97139712 None:intergenic 30.0%
GATCCAGTTCAGTAAATAAT+GGG + chr3.4:97139882-97139901 None:intergenic 30.0%
GATGAACCACAAAATTACAT+TGG + chr3.4:97138940-97138959 None:intergenic 30.0%
GGACCAACTTAATCAATTTA+GGG - chr3.4:97140436-97140455 MS.gene064688:intron 30.0%
GTTGTAGTAGAATTGAATTG+TGG - chr3.4:97137604-97137623 MS.gene064688:intron 30.0%
TCACAAGATTACATTTCTTG+TGG - chr3.4:97140337-97140356 MS.gene064688:intron 30.0%
TCATATTTACATGGCAAGAA+AGG + chr3.4:97137665-97137684 None:intergenic 30.0%
TGCACTTTCTCATATTTACA+TGG + chr3.4:97137674-97137693 None:intergenic 30.0%
TGTAGTAGAATTGAATTGTG+GGG - chr3.4:97137606-97137625 MS.gene064688:intron 30.0%
TGTGTAAATAAATCCAGCAT+TGG - chr3.4:97140664-97140683 MS.gene064688:CDS 30.0%
TTCATGATGCAACATAGAAA+GGG + chr3.4:97138835-97138854 None:intergenic 30.0%
! AACTATATGGTTGATGTAAC+AGG - chr3.4:97139124-97139143 MS.gene064688:CDS 30.0%
! ACAGAAAAACGGAATCATTT+TGG + chr3.4:97139078-97139097 None:intergenic 30.0%
! GATAAAATGGTTTGTGTGAA+AGG - chr3.4:97137531-97137550 MS.gene064688:CDS 30.0%
! GGTACATACTATTGGATTTT+AGG + chr3.4:97138284-97138303 None:intergenic 30.0%
! TAAATGGAACCTAGAAGTTT+TGG - chr3.4:97139681-97139700 MS.gene064688:intron 30.0%
! TCTCTTCCAATGTAATTTTG+TGG - chr3.4:97138931-97138950 MS.gene064688:CDS 30.0%
! TGGTTCATCTTTATTTGTAG+TGG - chr3.4:97138951-97138970 MS.gene064688:intron 30.0%
! TTTTATAAGACTAGAAGCCT+TGG - chr3.4:97138563-97138582 MS.gene064688:intron 30.0%
!! AAATCTGGTTTCTTTTTGTG+TGG + chr3.4:97139425-97139444 None:intergenic 30.0%
!! ATACTATTGGATTTTAGGTC+AGG + chr3.4:97138279-97138298 None:intergenic 30.0%
!! CTGACAGTATTACTTGTTTT+TGG - chr3.4:97139447-97139466 MS.gene064688:intron 30.0%
!!! GTTTTGGAAGATACATTTCA+AGG - chr3.4:97139907-97139926 MS.gene064688:intron 30.0%
!!! TACTTGTTTTTGGTATAGGT+TGG - chr3.4:97139457-97139476 MS.gene064688:intron 30.0%
AAAGAAAAGAGACCAGAAGA+AGG + chr3.4:97140568-97140587 None:intergenic 35.0%
AACTCATCTTCAAATGGTAG+TGG - chr3.4:97137717-97137736 MS.gene064688:intron 35.0%
AAGAGTTACTAAGAGAGTTC+AGG - chr3.4:97139334-97139353 MS.gene064688:intron 35.0%
AAGGAGATGATTGACAAGAT+GGG - chr3.4:97139173-97139192 MS.gene064688:intron 35.0%
AATCCAAGGAATGTGAAACT+TGG + chr3.4:97139631-97139650 None:intergenic 35.0%
ACAATATATCTTTCGTGTGC+AGG - chr3.4:97139301-97139320 MS.gene064688:CDS 35.0%
AGATTCGAAGATATCTTTCG+AGG + chr3.4:97140000-97140019 None:intergenic 35.0%
ATGAATTACCTTGCATCTGA+CGG + chr3.4:97139539-97139558 None:intergenic 35.0%
ATGGGTTCATAGTCAAAATG+AGG - chr3.4:97138668-97138687 MS.gene064688:intron 35.0%
CAGAAAAGAAAGCGAATAAC+AGG - chr3.4:97140459-97140478 MS.gene064688:intron 35.0%
CGATCCAGTTCAGTAAATAA+TGG + chr3.4:97139883-97139902 None:intergenic 35.0%
CTGCCCTAAATTGATTAAGT+TGG + chr3.4:97140442-97140461 None:intergenic 35.0%
GACTTATGAGTATACACAAG+GGG + chr3.4:97140740-97140759 None:intergenic 35.0%
GATATAGTTCAAATTCCACC+TGG - chr3.4:97138456-97138475 MS.gene064688:CDS 35.0%
GGAATGAGAGTAATTGAATC+AGG - chr3.4:97139823-97139842 MS.gene064688:intron 35.0%
GGGACCAACTTAATCAATTT+AGG - chr3.4:97140435-97140454 MS.gene064688:intron 35.0%
GGTATAGTGGTACATACTAT+TGG + chr3.4:97138292-97138311 None:intergenic 35.0%
GTAATACTGTCAGACAAATC+TGG + chr3.4:97139440-97139459 None:intergenic 35.0%
TAGGAATATGCAACAGCAAA+GGG + chr3.4:97139222-97139241 None:intergenic 35.0%
TATAGTTCAAATTCCACCTG+GGG - chr3.4:97138458-97138477 MS.gene064688:CDS 35.0%
TATCTTCGAATCTGTCTCAT+TGG - chr3.4:97140007-97140026 MS.gene064688:intron 35.0%
TGACTTATTTGCAGACCAAA+TGG - chr3.4:97140085-97140104 MS.gene064688:intron 35.0%
TGGGTTCATAGTCAAAATGA+GGG - chr3.4:97138669-97138688 MS.gene064688:intron 35.0%
TGTTGCATCATGAATCTCTA+TGG - chr3.4:97138841-97138860 MS.gene064688:intron 35.0%
TTAGGAATATGCAACAGCAA+AGG + chr3.4:97139223-97139242 None:intergenic 35.0%
TTCATAGTCAAAATGAGGGA+TGG - chr3.4:97138673-97138692 MS.gene064688:intron 35.0%
TTTGGCAAATGTTGCCTAAA+TGG - chr3.4:97139665-97139684 MS.gene064688:intron 35.0%
! AAGTATTTGGCTTACAGTGA+TGG - chr3.4:97139802-97139821 MS.gene064688:intron 35.0%
! GATTCACTGGTACAAAGTTT+TGG - chr3.4:97139647-97139666 MS.gene064688:intron 35.0%
! GGAAAGTATGAACTTTACCT+TGG + chr3.4:97139387-97139406 None:intergenic 35.0%
! GTGGTTTTTATGTGTAGTTG+AGG - chr3.4:97138630-97138649 MS.gene064688:intron 35.0%
! TGGTTTCTTTTTGTGTGGTT+TGG + chr3.4:97139420-97139439 None:intergenic 35.0%
!! TTCAAATGGTAGTGGAAGTA+TGG - chr3.4:97137725-97137744 MS.gene064688:intron 35.0%
AAAATCAAGTTATCGCCCAG+GGG + chr3.4:97138424-97138443 None:intergenic 40.0%
AACTCCTTGGTTTCAACACA+AGG + chr3.4:97140115-97140134 None:intergenic 40.0%
ACAAAATCAAGTTATCGCCC+AGG + chr3.4:97138426-97138445 None:intergenic 40.0%
ACATGGCAAGAAAGGGAATT+AGG + chr3.4:97137657-97137676 None:intergenic 40.0%
ACTTTGTACCAGTGAATCCA+AGG + chr3.4:97139645-97139664 None:intergenic 40.0%
AGTTACTAAGAGAGTTCAGG+AGG - chr3.4:97139337-97139356 MS.gene064688:intron 40.0%
ATAGTTCAAATTCCACCTGG+GGG - chr3.4:97138459-97138478 MS.gene064688:CDS 40.0%
ATCGAACTAACTGTAGTGTG+TGG - chr3.4:97138054-97138073 MS.gene064688:intron 40.0%
ATGCTGCCAAAGTTAGCAAT+CGG - chr3.4:97138027-97138046 MS.gene064688:intron 40.0%
ATTGTGTTGAAGATGGAGGA+TGG - chr3.4:97138766-97138785 MS.gene064688:CDS 40.0%
ATTTACTGAACTGGATCGGT+AGG - chr3.4:97139885-97139904 MS.gene064688:intron 40.0%
CAAAACTATTACCAGCGTCT+TGG + chr3.4:97140183-97140202 None:intergenic 40.0%
CAAAATCAAGTTATCGCCCA+GGG + chr3.4:97138425-97138444 None:intergenic 40.0%
CAAGAGTAAACACACAGGTA+AGG + chr3.4:97140224-97140243 None:intergenic 40.0%
CTTACCTGTGTGTTTACTCT+TGG - chr3.4:97140222-97140241 MS.gene064688:intron 40.0%
GAAGGAGATGATTGACAAGA+TGG - chr3.4:97139172-97139191 MS.gene064688:intron 40.0%
GTGCAAAAGATTGAACTCCT+TGG + chr3.4:97140128-97140147 None:intergenic 40.0%
TCAACACAAGGCTTACCATT+TGG + chr3.4:97140103-97140122 None:intergenic 40.0%
TCCATCTTCAACACAATTGC+AGG + chr3.4:97138763-97138782 None:intergenic 40.0%
TCCTGCAATTGTGTTGAAGA+TGG - chr3.4:97138759-97138778 MS.gene064688:CDS 40.0%
TCGAACTAACTGTAGTGTGT+GGG - chr3.4:97138055-97138074 MS.gene064688:intron 40.0%
TGCAATTGTGTTGAAGATGG+AGG - chr3.4:97138762-97138781 MS.gene064688:CDS 40.0%
TGCTCAGCTATATCTTTCCA+AGG - chr3.4:97139367-97139386 MS.gene064688:intron 40.0%
TGGCCCATTATTTACTGAAC+TGG - chr3.4:97139876-97139895 MS.gene064688:intron 40.0%
TTCAACACAATTGCAGGATG+TGG + chr3.4:97138757-97138776 None:intergenic 40.0%
TTCACATTCCTTGGATTCAC+TGG - chr3.4:97139634-97139653 MS.gene064688:intron 40.0%
TTTCCACATGCAACTTACAC+AGG + chr3.4:97139595-97139614 None:intergenic 40.0%
! AAGTGTCTTGTTAATGGCAG+CGG - chr3.4:97138981-97139000 MS.gene064688:intron 40.0%
! AGTGTTGCTATGCCTATGAT+TGG - chr3.4:97137567-97137586 MS.gene064688:CDS 40.0%
! ATCACACCGATTGCTAACTT+TGG + chr3.4:97138036-97138055 None:intergenic 40.0%
! ATCATTTTACAATAGCCCCC+AGG + chr3.4:97138477-97138496 None:intergenic 40.0%
! GATGCCAAGTGTCTTGTTAA+TGG - chr3.4:97138975-97138994 MS.gene064688:intron 40.0%
! TAAGCCTTGTGTTGAAACCA+AGG - chr3.4:97140108-97140127 MS.gene064688:intron 40.0%
!! GCAATGTTGATAGCATCTGA+AGG + chr3.4:97139517-97139536 None:intergenic 40.0%
!!! AGGCACAATTTTTTGCAGGT+CGG + chr3.4:97138376-97138395 None:intergenic 40.0%
!!! AGTGAGGCACAATTTTTTGC+AGG + chr3.4:97138380-97138399 None:intergenic 40.0%
!!! CTTTTTGTGTGGTTTGGTGA+GGG + chr3.4:97139414-97139433 None:intergenic 40.0%
!!! TCTTTTTGTGTGGTTTGGTG+AGG + chr3.4:97139415-97139434 None:intergenic 40.0%
!!! TTTTTGTGTGGTTTGGTGAG+GGG + chr3.4:97139413-97139432 None:intergenic 40.0%
ACCTCCAAGAGTAAACACAC+AGG + chr3.4:97140229-97140248 None:intergenic 45.0%
ACCTGTGTGTTTACTCTTGG+AGG - chr3.4:97140225-97140244 MS.gene064688:intron 45.0%
ACTCCAACTCAACCTTCTTC+TGG - chr3.4:97140553-97140572 MS.gene064688:CDS 45.0%
AGACCAGAAGAAGGTTGAGT+TGG + chr3.4:97140559-97140578 None:intergenic 45.0%
ATGATTGGACCAATCAACGC+TGG - chr3.4:97137582-97137601 MS.gene064688:CDS 45.0%
ATGGTGTACTCCAGTGGTAA+TGG - chr3.4:97138240-97138259 MS.gene064688:intron 45.0%
ATGTGTATGGTGTACTCCAG+TGG - chr3.4:97138234-97138253 MS.gene064688:intron 45.0%
CAGCCAAGTTTCACATTCCT+TGG - chr3.4:97139625-97139644 MS.gene064688:CDS 45.0%
GCTGCCATTAACAAGACACT+TGG + chr3.4:97138982-97139001 None:intergenic 45.0%
TCACCTGTGTAAGTTGCATG+TGG - chr3.4:97139589-97139608 MS.gene064688:CDS 45.0%
TCAGCTTAGTGGCGAGAATA+GGG - chr3.4:97138087-97138106 MS.gene064688:intron 45.0%
TGATAGCATCTGAAGGTCGA+AGG + chr3.4:97139510-97139529 None:intergenic 45.0%
TGTATAGGCACCTACAACGT+TGG + chr3.4:97139775-97139794 None:intergenic 45.0%
TGTGTAGTTGAGGTGAAGAG+TGG - chr3.4:97138640-97138659 MS.gene064688:intron 45.0%
TTGAAGATGGAGGATGGAAC+TGG - chr3.4:97138772-97138791 MS.gene064688:CDS 45.0%
! AGAGTGTCCACGATCTGAAA+CGG + chr3.4:97140640-97140659 None:intergenic 45.0%
! ATCCAGCATTGGAATGTCGA+TGG - chr3.4:97140675-97140694 MS.gene064688:CDS 45.0%
! ATTTTACAATAGCCCCCAGG+TGG + chr3.4:97138474-97138493 None:intergenic 45.0%
! TAATTGGGTCTGTACTGGTG+TGG + chr3.4:97138150-97138169 None:intergenic 45.0%
! TCCAGCATTGGAATGTCGAT+GGG - chr3.4:97140676-97140695 MS.gene064688:CDS 45.0%
! TGAACTGGATCGGTAGGTTT+TGG - chr3.4:97139891-97139910 MS.gene064688:intron 45.0%
! TTTGGTTCCGTTTCAGATCG+TGG - chr3.4:97140630-97140649 MS.gene064688:CDS 45.0%
!! AATAATGGGCCATCTGAACC+AGG + chr3.4:97139868-97139887 None:intergenic 45.0%
!! ATAATGGGCCATCTGAACCA+GGG + chr3.4:97139867-97139886 None:intergenic 45.0%
!! CTACTACAACCAGCGTTGAT+TGG + chr3.4:97137594-97137613 None:intergenic 45.0%
!! GATTTTAGGTCAGGTACTCC+GGG + chr3.4:97138270-97138289 None:intergenic 45.0%
!! GCGTTGATTGGTCCAATCAT+AGG + chr3.4:97137582-97137601 None:intergenic 45.0%
!! GGATTTTAGGTCAGGTACTC+CGG + chr3.4:97138271-97138290 None:intergenic 45.0%
!!! TGTGCCTCACTGATTTTGTG+AGG - chr3.4:97138389-97138408 MS.gene064688:CDS 45.0%
!!! TTTTGTGTGGTTTGGTGAGG+GGG + chr3.4:97139412-97139431 None:intergenic 45.0%
AAACTGTCAACTCAGTCCCC+TGG - chr3.4:97139847-97139866 MS.gene064688:intron 50.0%
AACTGGTCCACCAACGTTGT+AGG - chr3.4:97139762-97139781 MS.gene064688:intron 50.0%
AACTGTAGTGTGTGGGCAAG+AGG - chr3.4:97138062-97138081 MS.gene064688:intron 50.0%
AGGTGAAGAGTGGAGGAGAT+GGG - chr3.4:97138650-97138669 MS.gene064688:intron 50.0%
ATAGGCACCTACAACGTTGG+TGG + chr3.4:97139772-97139791 None:intergenic 50.0%
CAACATTGCCGTCAGATGCA+AGG - chr3.4:97139528-97139547 MS.gene064688:CDS 50.0%
CAGCTTAGTGGCGAGAATAG+GGG - chr3.4:97138088-97138107 MS.gene064688:intron 50.0%
CTGGCCTCACAAAATCAGTG+AGG + chr3.4:97138396-97138415 None:intergenic 50.0%
GCAGGATGTGGTGCATAATC+CGG + chr3.4:97138745-97138764 None:intergenic 50.0%
GTAGTTGAGGTGAAGAGTGG+AGG - chr3.4:97138643-97138662 MS.gene064688:intron 50.0%
GTCAGCTTAGTGGCGAGAAT+AGG - chr3.4:97138086-97138105 MS.gene064688:intron 50.0%
TACACAAGGGGAGAAGCGAA+CGG + chr3.4:97140728-97140747 None:intergenic 50.0%
TCCCATCGACATTCCAATGC+TGG + chr3.4:97140680-97140699 None:intergenic 50.0%
! TAATGGGCCATCTGAACCAG+GGG + chr3.4:97139866-97139885 None:intergenic 50.0%
!! ATGCAACTCTAGCTCTGTGG+AGG - chr3.4:97140414-97140433 MS.gene064688:intron 50.0%
!! CTGATGCAACTCTAGCTCTG+TGG - chr3.4:97140411-97140430 MS.gene064688:intron 50.0%
!! TGCAACTCTAGCTCTGTGGA+GGG - chr3.4:97140415-97140434 MS.gene064688:intron 50.0%
!!! CTCACTGATTTTGTGAGGCC+AGG - chr3.4:97138394-97138413 MS.gene064688:CDS 50.0%
AATAGGGGCGGACCTAGACT+AGG - chr3.4:97138103-97138122 MS.gene064688:CDS 55.0%
ACTCAGTCCCCTGGTTCAGA+TGG - chr3.4:97139856-97139875 MS.gene064688:intron 55.0%
ATCAAGTTATCGCCCAGGGG+CGG + chr3.4:97138421-97138440 None:intergenic 55.0%
CCCTCATGGAGGACTTCTTC+CGG - chr3.4:97138723-97138742 MS.gene064688:intron 55.0%
CCGGAAGAAGTCCTCCATGA+GGG + chr3.4:97138726-97138745 None:intergenic 55.0%
CTTAGTGGCGAGAATAGGGG+CGG - chr3.4:97138091-97138110 MS.gene064688:intron 55.0%
GAGGTGAAGAGTGGAGGAGA+TGG - chr3.4:97138649-97138668 MS.gene064688:intron 55.0%
GTCCATAACAGCCCTCATGG+AGG - chr3.4:97138712-97138731 MS.gene064688:intron 55.0%
GTCCTCCATGAGGGCTGTTA+TGG + chr3.4:97138717-97138736 None:intergenic 55.0%
TCCGGAAGAAGTCCTCCATG+AGG + chr3.4:97138727-97138746 None:intergenic 55.0%
TGCGTCCATAACAGCCCTCA+TGG - chr3.4:97138709-97138728 MS.gene064688:intron 55.0%
TGGCACTTGCCACACCAGTA+CGG + chr3.4:97138130-97138149 None:intergenic 55.0%
!! GGCAAGAGGTGTCAGCTTAG+TGG - chr3.4:97138076-97138095 MS.gene064688:intron 55.0%
CACCAGTACGGGCCTAGTCT+AGG + chr3.4:97138118-97138137 None:intergenic 60.0%
GACCTAGACTAGGCCCGTAC+TGG - chr3.4:97138113-97138132 MS.gene064688:CDS 60.0%
GGCACTTGCCACACCAGTAC+GGG + chr3.4:97138129-97138148 None:intergenic 60.0%
! AGACTAGGCCCGTACTGGTG+TGG - chr3.4:97138118-97138137 MS.gene064688:CDS 60.0%
!! GAAGAGCGCTACCAAGACGC+TGG - chr3.4:97140169-97140188 MS.gene064688:intron 60.0%
!! GTGTGGTTTGGTGAGGGGGA+AGG + chr3.4:97139408-97139427 None:intergenic 60.0%
!! TCCAGTGGTAATGGTGCGCC+CGG - chr3.4:97138249-97138268 MS.gene064688:intron 60.0%
TCCGGGCGCACCATTACCAC+TGG + chr3.4:97138253-97138272 None:intergenic 65.0%
TTATCGCCCAGGGGCGGACC+TGG + chr3.4:97138415-97138434 None:intergenic 70.0%
GTGAGGCCAGGTCCGCCCCT+GGG - chr3.4:97138406-97138425 MS.gene064688:CDS 75.0%
TGTGAGGCCAGGTCCGCCCC+TGG - chr3.4:97138405-97138424 MS.gene064688:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 97137528 97140763 97137528 ID=MS.gene064688
chr3.4 mRNA 97137528 97140763 97137528 ID=MS.gene064688.t1;Parent=MS.gene064688
chr3.4 exon 97140487 97140763 97140487 ID=MS.gene064688.t1.exon1;Parent=MS.gene064688.t1
chr3.4 CDS 97140487 97140763 97140487 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97139474 97139644 97139474 ID=MS.gene064688.t1.exon2;Parent=MS.gene064688.t1
chr3.4 CDS 97139474 97139644 97139474 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97139271 97139320 97139271 ID=MS.gene064688.t1.exon3;Parent=MS.gene064688.t1
chr3.4 CDS 97139271 97139320 97139271 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97139089 97139145 97139089 ID=MS.gene064688.t1.exon4;Parent=MS.gene064688.t1
chr3.4 CDS 97139089 97139145 97139089 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97138903 97138968 97138903 ID=MS.gene064688.t1.exon5;Parent=MS.gene064688.t1
chr3.4 CDS 97138903 97138968 97138903 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97138742 97138816 97138742 ID=MS.gene064688.t1.exon6;Parent=MS.gene064688.t1
chr3.4 CDS 97138742 97138816 97138742 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97138389 97138507 97138389 ID=MS.gene064688.t1.exon7;Parent=MS.gene064688.t1
chr3.4 CDS 97138389 97138507 97138389 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97138101 97138192 97138101 ID=MS.gene064688.t1.exon8;Parent=MS.gene064688.t1
chr3.4 CDS 97138101 97138192 97138101 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
chr3.4 exon 97137528 97137610 97137528 ID=MS.gene064688.t1.exon9;Parent=MS.gene064688.t1
chr3.4 CDS 97137528 97137610 97137528 ID=cds.MS.gene064688.t1;Parent=MS.gene064688.t1
Gene Sequence

>MS.gene064688

ATGGATAAAATGGTTTGTGTGAAAGGATCAGCTATGTGCAGTGTTGCTATGCCTATGATTGGACCAATCAACGCTGGTTGTAGTAGAATTGAATTGTGGGGATTCAGTGCTAGTAACAAAATCAAGCCTAATTCCCTTTCTTGCCATGTAAATATGAGAAAGTGCAGAACTGTGATGAATTGCAGTTTCAACTCATCTTCAAATGGTAGTGGAAGTATGGCTGAAAATTTTAATGAAAATGATGAAGATTATGTTAATTCTACTATTCTTGAAGCAGGTATATTACATATATCATATATGCTTAGTTTAGTTGGTGAAAAATTGTTTTTTTATTGGCTATGAATTTATGATTATGCCGCATGAGTTAGTAATTAGTGTGTGTGTGTGATCAATGTAACTGTATAATGTATTGCTTTTTGACAAGCCCATAAAACTATTTTATTTTCATGACTGTCAAAATAGAGTTTCTACTAAAGTTTGTGTTTTATTGATTATGATTATGCTGCCAAAGTTAGCAATCGGTGTGATCGAACTAACTGTAGTGTGTGGGCAAGAGGTGTCAGCTTAGTGGCGAGAATAGGGGCGGACCTAGACTAGGCCCGTACTGGTGTGGCAAGTGCCACACCAGTACAGACCCAATTATTTATTTTATTTTATTTTTAGCTAAATGTTATATTATATAAATCAATCTTTGTAAATTAATCACATGTGTATGGTGTACTCCAGTGGTAATGGTGCGCCCGGAGTACCTGACCTAAAATCCAATAGTATGTACCACTATACCTACAACTTTTTTATGAGTAATTATTGAGAGAAATAATATCTATACACTAAAGAAATTGGCTCCGACCTGCAAAAAATTGTGCCTCACTGATTTTGTGAGGCCAGGTCCGCCCCTGGGCGATAACTTGATTTTGTAACCTCAAGTGATATAGTTCAAATTCCACCTGGGGGCTATTGTAAAATGATCAGTAGTATCACCGTTGTTTTATTGATTCTCCATTTTTTTTTAAAGTAACTGTATAGTGTCTTGTTTTTTATAAGACTAGAAGCCTTGGAAATTTTATTTTACTCTCATGGCTTGTGAAAATAAATTTGTTGTGTGGTTTTTATGTGTAGTTGAGGTGAAGAGTGGAGGAGATGGGTTCATAGTCAAAATGAGGGATGGTAGACACTTGAGATGCGTCCATAACAGCCCTCATGGAGGACTTCTTCCGGATTATGCACCACATCCTGCAATTGTGTTGAAGATGGAGGATGGAACTGGTTTACTTCTCCCCATAATCGTTTGTATGTCTTTTACTCCCTTTCTATGTTGCATCATGAATCTCTATGGAATTGCATTGTATCATACAAGTTTACTTTTTGGATCCTATCCTATATATTATTTTGGTGATGATATATCTCTTCCAATGTAATTTTGTGGTTCATCTTTATTTGTAGTGGAGATGCCAAGTGTCTTGTTAATGGCAGCGGTTCGCAATGTTCAAATAGTATGTCTTCTATTTTCAATTGTATTCCATTGCATTAGTAGTAAAATGTTGGATCCAAAATGATTCCGTTTTTCTGTAACATATTCTCATGAACCAAACAACTAACTATATGGTTGATGTAACAGGCTAGACCTACTTTATATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTATGAAGTATGACTATTTTTATCCCTTTGCTGTTGCATATTCCTAATCTTAATTGTATTGTAGTCTTTCTTCATACTCTCATAGTTTATATCAATAATCAATTGACAATATATCTTTCGTGTGCAGGTCAGAGCTGTAAGAGTTACTAAGAGAGTTCAGGAGGCATATTTTGCTCAGCTATATCTTTCCAAGGTAAAGTTCATACTTTCCTTCCCCCTCACCAAACCACACAAAAAGAAACCAGATTTGTCTGACAGTATTACTTGTTTTTGGTATAGGTTGGAAATGAGTCAGAATGTATGAGCTTTGACCTTCGACCTTCAGATGCTATCAACATTGCCGTCAGATGCAAGGTAATTCATTTATGTGAATTCAATGATATGAATACATGATCACCTGTGTAAGTTGCATGTGGAAAAAAAGTTGTTCAGCCAAGTTTCACATTCCTTGGATTCACTGGTACAAAGTTTTGGCAAATGTTGCCTAAATGGAACCTAGAAGTTTTGGATCAAATTCTAATTATTAAAAAATTATTAGTTAAACGAAACTTGTTTATCAAAGATTTAACTGGTCCACCAACGTTGTAGGTGCCTATACAAGTCAACAAGTATTTGGCTTACAGTGATGGAATGAGAGTAATTGAATCAGGCAAACTGTCAACTCAGTCCCCTGGTTCAGATGGCCCATTATTTACTGAACTGGATCGGTAGGTTTTGGAAGATACATTTCAAGGCAGTATGATTTTGTGTAGTGTAGTATTCATAATCTCTGTTCTGGACATACTTTCACTTTTATTTTTTCCTCGAAAGATATCTTCGAATCTGTCTCATTGGTAAATTGCTAGCACTTTTTACATTTTGAAAGACAAGTATTAACTAAAAATAAAAATGACTTATTTGCAGACCAAATGGTAAGCCTTGTGTTGAAACCAAGGAGTTCAATCTTTTGCACAACATGTTGACAGCTGTTGTAGAAGAGCGCTACCAAGACGCTGGTAATAGTTTTGTTTCTTTTTATTTCTTTACCTTACCTGTGTGTTTACTCTTGGAGGTATTCTTTTTCTTTATGCATGATGAATGATGTTTGACAAAAGTTCTTTTGACGATTGATGTATTAGTGCCTGCTAATCATTATTGATTTTCACAAGATTACATTTCTTGTGGATTGAAATATACATCGTACTTCTAAAGTTACTATTCTTACGTCTCATGTTTCTGATGCAACTCTAGCTCTGTGGAGGGACCAACTTAATCAATTTAGGGCAGAAAAGAAAGCGAATAACAGGTGAGTTTACTTCATATGACAAGTTGACAATGTTTGATGCTCTGTCATAAGAAGTTTCATACTGATTCATTTACTCCAACTCAACCTTCTTCTGGTCTCTTTTCTTTTTCTTATTTTTTACGTTGACAACATTATATAAGATAGCAAATTTTGGTTCCGTTTCAGATCGTGGACACTCTAAAATGTGTAAATAAATCCAGCATTGGAATGTCGATGGGAATTTGAAGAGCAGATAGCTGTCATACCGTTCGCTTCTCCCCTTGTGTATACTCATAAGTCTTAA

Protein sequence

>MS.gene064688.t1

MDKMVCVKGSAMCSVAMPMIGPINAGCSRIELWGFSASNKIKPNSLSCHVNMRKCRTVMNCSFNSSSNGSGSMAENFNENDEDYVNSTILEAVEVKSGGDGFIVKMRDGRHLRCVHNSPHGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTLYQVVKEMIDKMGYEVRAVRVTKRVQEAYFAQLYLSKVGNESECMSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPNGKPCVETKEFNLLHNMLTAVVEERYQDAALECRWEFEEQIAVIPFASPLVYTHKS