Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064798.t1 | XP_003603840.3 | 99.5 | 439 | 2 | 0 | 1 | 439 | 12 | 450 | 4.70E-240 | 840.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064798.t1 | Q5SR56 | 25.8 | 360 | 231 | 8 | 56 | 406 | 81 | 413 | 5.6e-16 | 87.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064798.t1 | G7J5X3 | 99.5 | 434 | 2 | 0 | 6 | 439 | 1 | 434 | 2.0e-237 | 830.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054713 | MS.gene064798 | 0.86802 | 8.90E-66 | -1.69E-46 |
MS.gene058042 | MS.gene064798 | 0.84036 | 9.12E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene029256 | MS.gene064798 | PPI |
MS.gene064798 | MS.gene52801 | PPI |
MS.gene064986 | MS.gene064798 | PPI |
MS.gene014380 | MS.gene064798 | PPI |
MS.gene69359 | MS.gene064798 | PPI |
MS.gene52801 | MS.gene064798 | PPI |
MS.gene056267 | MS.gene064798 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064798.t1 | MTR_3g114810 | 99.539 | 434 | 2 | 0 | 6 | 439 | 1 | 434 | 0.0 | 880 |
MS.gene064798.t1 | MTR_1g112980 | 55.402 | 435 | 183 | 4 | 6 | 438 | 1 | 426 | 5.24e-171 | 487 |
MS.gene064798.t1 | MTR_1g112980 | 53.804 | 368 | 159 | 4 | 6 | 371 | 1 | 359 | 1.90e-137 | 399 |
MS.gene064798.t1 | MTR_1g112980 | 53.239 | 355 | 155 | 4 | 6 | 358 | 1 | 346 | 9.86e-130 | 380 |
MS.gene064798.t1 | MTR_1g092880 | 36.019 | 422 | 253 | 2 | 14 | 432 | 13 | 420 | 1.97e-90 | 281 |
MS.gene064798.t1 | MTR_1g092870 | 35.800 | 419 | 258 | 2 | 14 | 432 | 13 | 420 | 5.57e-90 | 280 |
MS.gene064798.t1 | MTR_1g092880 | 36.277 | 419 | 249 | 3 | 14 | 429 | 13 | 416 | 9.21e-89 | 277 |
MS.gene064798.t1 | MTR_1g092880 | 35.142 | 387 | 234 | 2 | 14 | 397 | 13 | 385 | 1.41e-79 | 251 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064798.t1 | AT5G42210 | 57.309 | 431 | 183 | 1 | 7 | 437 | 3 | 432 | 0.0 | 517 |
MS.gene064798.t1 | AT5G42210 | 56.888 | 392 | 168 | 1 | 7 | 398 | 3 | 393 | 9.70e-164 | 467 |
MS.gene064798.t1 | AT2G16980 | 44.662 | 459 | 220 | 3 | 3 | 437 | 13 | 461 | 1.67e-138 | 405 |
MS.gene064798.t1 | AT2G16980 | 44.518 | 456 | 219 | 3 | 6 | 437 | 1 | 446 | 2.88e-137 | 402 |
MS.gene064798.t1 | AT2G16990 | 48.936 | 423 | 201 | 4 | 13 | 422 | 7 | 427 | 8.43e-137 | 400 |
MS.gene064798.t1 | AT2G16990 | 48.513 | 437 | 210 | 4 | 13 | 436 | 7 | 441 | 6.25e-136 | 398 |
MS.gene064798.t1 | AT2G16990 | 48.513 | 437 | 210 | 4 | 13 | 436 | 7 | 441 | 6.25e-136 | 398 |
MS.gene064798.t1 | AT2G16970 | 45.067 | 446 | 229 | 3 | 6 | 436 | 1 | 445 | 2.16e-135 | 397 |
MS.gene064798.t1 | AT2G16980 | 44.444 | 459 | 220 | 4 | 3 | 437 | 13 | 460 | 1.08e-133 | 393 |
MS.gene064798.t1 | AT2G16990 | 48.000 | 400 | 193 | 4 | 13 | 399 | 7 | 404 | 1.24e-124 | 367 |
MS.gene064798.t1 | AT2G16990 | 48.000 | 400 | 193 | 4 | 13 | 399 | 7 | 404 | 1.24e-124 | 367 |
MS.gene064798.t1 | AT2G16980 | 43.095 | 420 | 205 | 3 | 3 | 398 | 13 | 422 | 8.45e-120 | 356 |
MS.gene064798.t1 | AT2G16990 | 45.538 | 437 | 196 | 5 | 13 | 436 | 7 | 414 | 2.72e-119 | 355 |
MS.gene064798.t1 | AT2G16970 | 43.627 | 408 | 214 | 3 | 6 | 398 | 1 | 407 | 1.77e-117 | 349 |
MS.gene064798.t1 | AT2G16970 | 43.627 | 408 | 214 | 3 | 6 | 398 | 1 | 407 | 1.77e-117 | 349 |
MS.gene064798.t1 | AT2G16970 | 42.453 | 424 | 228 | 3 | 6 | 414 | 1 | 423 | 5.02e-117 | 350 |
MS.gene064798.t1 | AT2G16980 | 41.071 | 448 | 202 | 5 | 3 | 398 | 13 | 450 | 1.92e-115 | 346 |
MS.gene064798.t1 | AT2G16970 | 43.081 | 383 | 202 | 3 | 6 | 373 | 1 | 382 | 8.00e-106 | 319 |
MS.gene064798.t1 | AT2G16990 | 46.556 | 363 | 171 | 5 | 13 | 354 | 7 | 367 | 1.62e-103 | 313 |
MS.gene064798.t1 | AT2G16990 | 46.556 | 363 | 171 | 5 | 13 | 354 | 7 | 367 | 1.62e-103 | 313 |
MS.gene064798.t1 | AT2G16970 | 41.282 | 390 | 208 | 4 | 6 | 380 | 1 | 384 | 2.22e-101 | 307 |
MS.gene064798.t1 | AT2G16970 | 43.417 | 357 | 186 | 3 | 6 | 347 | 1 | 356 | 7.87e-100 | 303 |
MS.gene064798.t1 | AT2G16980 | 41.124 | 338 | 165 | 3 | 123 | 437 | 1 | 327 | 1.40e-81 | 255 |
MS.gene064798.t1 | AT2G16970 | 54.598 | 174 | 78 | 1 | 6 | 178 | 1 | 174 | 1.57e-57 | 193 |
MS.gene064798.t1 | AT2G16970 | 49.390 | 164 | 83 | 0 | 273 | 436 | 175 | 338 | 4.08e-51 | 176 |
Find 94 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGACTTAATGATCATTTC+TGG | 0.173185 | 3.4:+98278972 | MS.gene064798:CDS |
TTGTGTGCAGTATTACTTAA+AGG | 0.198024 | 3.4:+98278920 | MS.gene064798:intron |
CTTGCAGATGTTGGCCTTCA+TGG | 0.200217 | 3.4:+98278800 | MS.gene064798:CDS |
ACTTTCCACTCACCCGTTAA+TGG | 0.208512 | 3.4:-98280066 | None:intergenic |
GCTTGTGATGATGCCCATTT+TGG | 0.228414 | 3.4:+98276372 | MS.gene064798:CDS |
ATCAGAGAGATCACCCAAAA+TGG | 0.242550 | 3.4:-98276386 | None:intergenic |
GCACTGCTTCTTCGACCTTC+TGG | 0.250970 | 3.4:-98277862 | None:intergenic |
GGTGATCTCTCTGATAAGTA+TGG | 0.311306 | 3.4:+98276394 | MS.gene064798:CDS |
GGCTTTCCTTGTGAAATGAT+TGG | 0.315353 | 3.4:-98278149 | None:intergenic |
CTGAAGCCAGGAAAATTAAA+AGG | 0.317779 | 3.4:-98280183 | None:intergenic |
ATGATCATTTCTGGTATTGC+AGG | 0.320953 | 3.4:+98278981 | MS.gene064798:CDS |
GCTTTCCTTGTGAAATGATT+GGG | 0.321252 | 3.4:-98278148 | None:intergenic |
GGGATAATCATGAGGGTCAT+AGG | 0.323838 | 3.4:-98276439 | None:intergenic |
ATGGAGAAATTGAATATGTA+TGG | 0.326739 | 3.4:+98271140 | MS.gene064798:CDS |
AATCATGAGTGGGAGAATTA+TGG | 0.327479 | 3.4:+98271121 | None:intergenic |
CTTGGCTTTCTCTCCATTAA+CGG | 0.331892 | 3.4:+98280053 | MS.gene064798:CDS |
TCATAATTTATCGACATTCA+TGG | 0.337515 | 3.4:+98271193 | MS.gene064798:CDS |
AGTGCATTTGGAGTTCTTTC+AGG | 0.349547 | 3.4:+98277880 | MS.gene064798:CDS |
GGTCGAAGAAGCAGTGCATT+TGG | 0.349597 | 3.4:+98277868 | MS.gene064798:CDS |
TATGTCCATCTAACTCAAAA+TGG | 0.361400 | 3.4:-98280361 | None:intergenic |
AGGGCTCAAGGTTGCATCTC+AGG | 0.406266 | 3.4:+98280000 | MS.gene064798:CDS |
TTGGCTTTCTCTCCATTAAC+GGG | 0.411542 | 3.4:+98280054 | MS.gene064798:CDS |
AAGTGAGCATTCATCTTGTC+CGG | 0.414098 | 3.4:-98271258 | None:intergenic |
ACAGCATAGCATGGTCCTCT+TGG | 0.414980 | 3.4:+98279332 | MS.gene064798:CDS |
AAAGGAGGTTATATCTCTTA+AGG | 0.419562 | 3.4:-98278234 | None:intergenic |
TTCAGCAACCTTGCAGATGT+TGG | 0.424383 | 3.4:+98278791 | MS.gene064798:CDS |
GACCCTCATGATTATCCCCT+TGG | 0.424391 | 3.4:+98276444 | MS.gene064798:CDS |
GGCTTCAGTATAATGTGTAT+TGG | 0.431166 | 3.4:+98280198 | MS.gene064798:CDS |
TGCACATATTGTATCTCCCT+TGG | 0.435532 | 3.4:+98280035 | MS.gene064798:CDS |
AGCTCTATTTCTATCTGAAA+AGG | 0.445760 | 3.4:+98280158 | MS.gene064798:intron |
GAGAACATTGCAGCAGCATA+AGG | 0.448056 | 3.4:-98279533 | None:intergenic |
CAGCATAGCATGGTCCTCTT+GGG | 0.448466 | 3.4:+98279333 | MS.gene064798:CDS |
TGGATGATTCGCAGGCATAT+TGG | 0.454868 | 3.4:+98277576 | MS.gene064798:intron |
TTTGGAGTTCTTTCAGGGAT+AGG | 0.457164 | 3.4:+98277886 | MS.gene064798:CDS |
AAATGATTGGGGTATAAAGT+TGG | 0.469648 | 3.4:-98278136 | None:intergenic |
CTCCTACTTTGGGCGAGGCA+AGG | 0.477680 | 3.4:+98279174 | MS.gene064798:CDS |
TTCTTTCAGGGAAGGGCTCA+AGG | 0.479698 | 3.4:+98279988 | MS.gene064798:intron |
TTGAAAACCAGTGAGATAGA+TGG | 0.487866 | 3.4:-98271282 | None:intergenic |
TGCAGTATTACTTAAAGGCT+CGG | 0.491711 | 3.4:+98278925 | MS.gene064798:intron |
ATTGTTACATCGGTGATTGC+TGG | 0.492648 | 3.4:-98271221 | None:intergenic |
GTGCATTTGGAGTTCTTTCA+GGG | 0.492657 | 3.4:+98277881 | MS.gene064798:CDS |
ATCATTAACATGATTTGCGA+TGG | 0.498843 | 3.4:+98277649 | MS.gene064798:CDS |
GAGGCAAGGCTTCTTTCGAT+TGG | 0.501981 | 3.4:+98279188 | MS.gene064798:CDS |
TCACTTGCCATCTATCTCAC+TGG | 0.503898 | 3.4:+98271275 | MS.gene064798:CDS |
TATTGCAGGGACTGTGTCAC+AGG | 0.508069 | 3.4:+98278995 | MS.gene064798:CDS |
TAACCTCCTTTCTCAATAGT+AGG | 0.508494 | 3.4:+98278246 | MS.gene064798:CDS |
AATGTGTATTGGAATTGCTT+CGG | 0.510199 | 3.4:+98280209 | MS.gene064798:CDS |
GAGCTCAATGCTTTCAAAAG+TGG | 0.510207 | 3.4:-98278212 | None:intergenic |
ACCCTCATGATTATCCCCTT+GGG | 0.512456 | 3.4:+98276445 | MS.gene064798:CDS |
GGATAATCATGAGGGTCATA+GGG | 0.513412 | 3.4:-98276438 | None:intergenic |
TCAGAGAGATCACCCAAAAT+GGG | 0.513615 | 3.4:-98276385 | None:intergenic |
GGTCATAGGGAGCGTAAGAA+TGG | 0.513622 | 3.4:-98276425 | None:intergenic |
CTTTCCTTGTGAAATGATTG+GGG | 0.515488 | 3.4:-98278147 | None:intergenic |
ACAAGTTGATCCCCGTGAGC+AGG | 0.529631 | 3.4:+98279713 | MS.gene064798:CDS |
CTCTGATAAGTATGGGAGGA+AGG | 0.534368 | 3.4:+98276402 | MS.gene064798:CDS |
TTAACATGATACCTGCTCAC+GGG | 0.541820 | 3.4:-98279724 | None:intergenic |
GTCACACCTACTATTGAGAA+AGG | 0.547596 | 3.4:-98278252 | None:intergenic |
TGATCATTTCTGGTATTGCA+GGG | 0.548846 | 3.4:+98278982 | MS.gene064798:CDS |
ACAATGGCTGCTCTTTGTCC+CGG | 0.553213 | 3.4:+98271239 | MS.gene064798:CDS |
ACCAGAAATGATCATTAAGT+CGG | 0.565383 | 3.4:-98278973 | None:intergenic |
GAAAGACGGTCATGAAGAGA+TGG | 0.572645 | 3.4:-98271169 | None:intergenic |
TCCATCTAACTCAAAATGGA+AGG | 0.576928 | 3.4:-98280357 | None:intergenic |
TGGCCTTCATGGTTCAATGA+TGG | 0.579807 | 3.4:+98278811 | MS.gene064798:CDS |
AGTGAGCATTCATCTTGTCC+GGG | 0.580465 | 3.4:-98271257 | None:intergenic |
GTGATCTCTCTGATAAGTAT+GGG | 0.589147 | 3.4:+98276395 | MS.gene064798:CDS |
ATACCATCATTGAACCATGA+AGG | 0.590082 | 3.4:-98278814 | None:intergenic |
AGCCTTGCCTCGCCCAAAGT+AGG | 0.594097 | 3.4:-98279176 | None:intergenic |
TCAGAGTATGATGCTTAGAG+TGG | 0.595054 | 3.4:+98280332 | MS.gene064798:CDS |
ATACACATTATACTGAAGCC+AGG | 0.605025 | 3.4:-98280195 | None:intergenic |
ATCTCTCTGATAAGTATGGG+AGG | 0.608663 | 3.4:+98276398 | MS.gene064798:CDS |
ATTAACATGATACCTGCTCA+CGG | 0.609111 | 3.4:-98279725 | None:intergenic |
TGTTCATTTACAGCATAGCA+TGG | 0.610699 | 3.4:+98279323 | MS.gene064798:CDS |
TACCCAAGGGGATAATCATG+AGG | 0.613909 | 3.4:-98276447 | None:intergenic |
CGATAAATTATGAAGAAAGA+CGG | 0.614156 | 3.4:-98271183 | None:intergenic |
ATTAACTTATAATCATGAGT+GGG | 0.615387 | 3.4:+98271111 | None:intergenic |
TGGAGAAATTGAATATGTAT+GGG | 0.616448 | 3.4:+98271141 | MS.gene064798:CDS |
AATTAACTTATAATCATGAG+TGG | 0.618145 | 3.4:+98271110 | None:intergenic |
TATACCCCAATCATTTCACA+AGG | 0.622314 | 3.4:+98278143 | MS.gene064798:CDS |
AGCAATCACCGATGTAACAA+TGG | 0.634236 | 3.4:+98271223 | MS.gene064798:CDS |
AAGAGCAGCCATTGTTACAT+CGG | 0.640036 | 3.4:-98271231 | None:intergenic |
CATCGGCGACTGAATCCCGA+AGG | 0.645898 | 3.4:-98278109 | None:intergenic |
TAACATGATACCTGCTCACG+GGG | 0.648157 | 3.4:-98279723 | None:intergenic |
CGTTAATGGAGAGAAAGCCA+AGG | 0.651353 | 3.4:-98280052 | None:intergenic |
ACCCAAGGGGATAATCATGA+GGG | 0.653332 | 3.4:-98276446 | None:intergenic |
TAGGCAGATAACGTTCCAGA+AGG | 0.656602 | 3.4:+98277847 | MS.gene064798:intron |
CATGAAGGCCAACATCTGCA+AGG | 0.659193 | 3.4:-98278799 | None:intergenic |
ACGTAAGCTAGAGCGAGGCA+AGG | 0.659385 | 3.4:-98277679 | None:intergenic |
CACCTGAAAAGTTTGAGCAG+CGG | 0.670212 | 3.4:-98277953 | None:intergenic |
GTTAATGGAGAGAAAGCCAA+GGG | 0.684337 | 3.4:-98280051 | None:intergenic |
ACACCTACTATTGAGAAAGG+AGG | 0.685291 | 3.4:-98278249 | None:intergenic |
CAGCAAAAGACATACCCAAG+AGG | 0.697205 | 3.4:-98279347 | None:intergenic |
TAACAACGTAAGCTAGAGCG+AGG | 0.704711 | 3.4:-98277684 | None:intergenic |
TGTTGCACACACAAACGCTG+AGG | 0.726307 | 3.4:-98277911 | None:intergenic |
AGTAGAAAGAAGTACCCAAG+GGG | 0.729323 | 3.4:-98276459 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 98271125 | 98280374 | 98271125 | ID=MS.gene064798 |
chr3.4 | mRNA | 98271125 | 98280374 | 98271125 | ID=MS.gene064798.t1;Parent=MS.gene064798 |
chr3.4 | exon | 98271125 | 98271310 | 98271125 | ID=MS.gene064798.t1.exon1;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98271125 | 98271310 | 98271125 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98276355 | 98276466 | 98276355 | ID=MS.gene064798.t1.exon2;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98276355 | 98276466 | 98276355 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98277590 | 98277702 | 98277590 | ID=MS.gene064798.t1.exon3;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98277590 | 98277702 | 98277590 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98277850 | 98277972 | 98277850 | ID=MS.gene064798.t1.exon4;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98277850 | 98277972 | 98277850 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98278062 | 98278267 | 98278062 | ID=MS.gene064798.t1.exon5;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98278062 | 98278267 | 98278062 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98278757 | 98278832 | 98278757 | ID=MS.gene064798.t1.exon6;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98278757 | 98278832 | 98278757 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98278930 | 98279016 | 98278930 | ID=MS.gene064798.t1.exon7;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98278930 | 98279016 | 98278930 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98279152 | 98279232 | 98279152 | ID=MS.gene064798.t1.exon8;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98279152 | 98279232 | 98279152 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98279322 | 98279354 | 98279322 | ID=MS.gene064798.t1.exon9;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98279322 | 98279354 | 98279322 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98279530 | 98279583 | 98279530 | ID=MS.gene064798.t1.exon10;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98279530 | 98279583 | 98279530 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98279693 | 98279734 | 98279693 | ID=MS.gene064798.t1.exon11;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98279693 | 98279734 | 98279693 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98279997 | 98280075 | 98279997 | ID=MS.gene064798.t1.exon12;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98279997 | 98280075 | 98279997 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98280160 | 98280230 | 98280160 | ID=MS.gene064798.t1.exon13;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98280160 | 98280230 | 98280160 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
chr3.4 | exon | 98280318 | 98280374 | 98280318 | ID=MS.gene064798.t1.exon14;Parent=MS.gene064798.t1 |
chr3.4 | CDS | 98280318 | 98280374 | 98280318 | ID=cds.MS.gene064798.t1;Parent=MS.gene064798.t1 |
Gene Sequence |
Protein sequence |