Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69359.t1 | XP_003603840.3 | 99.5 | 439 | 2 | 0 | 1 | 439 | 12 | 450 | 4.70E-240 | 840.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69359.t1 | Q5SR56 | 25.8 | 360 | 231 | 8 | 56 | 406 | 81 | 413 | 5.6e-16 | 87.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69359.t1 | G7J5X3 | 99.5 | 434 | 2 | 0 | 6 | 439 | 1 | 434 | 2.0e-237 | 830.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054713 | MS.gene69359 | 0.863386 | 2.58E-64 | -1.69E-46 |
MS.gene058042 | MS.gene69359 | 0.832289 | 1.03E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene69359 | MS.gene029256 | PPI |
MS.gene69359 | MS.gene056267 | PPI |
MS.gene014380 | MS.gene69359 | PPI |
MS.gene69359 | MS.gene064986 | PPI |
MS.gene69359 | MS.gene52801 | PPI |
MS.gene69359 | MS.gene064798 | PPI |
MS.gene029256 | MS.gene69359 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69359.t1 | MTR_3g114810 | 99.539 | 434 | 2 | 0 | 6 | 439 | 1 | 434 | 0.0 | 880 |
MS.gene69359.t1 | MTR_1g112980 | 55.402 | 435 | 183 | 4 | 6 | 438 | 1 | 426 | 5.24e-171 | 487 |
MS.gene69359.t1 | MTR_1g112980 | 53.804 | 368 | 159 | 4 | 6 | 371 | 1 | 359 | 1.90e-137 | 399 |
MS.gene69359.t1 | MTR_1g112980 | 53.239 | 355 | 155 | 4 | 6 | 358 | 1 | 346 | 9.86e-130 | 380 |
MS.gene69359.t1 | MTR_1g092880 | 36.019 | 422 | 253 | 2 | 14 | 432 | 13 | 420 | 1.97e-90 | 281 |
MS.gene69359.t1 | MTR_1g092870 | 35.800 | 419 | 258 | 2 | 14 | 432 | 13 | 420 | 5.57e-90 | 280 |
MS.gene69359.t1 | MTR_1g092880 | 36.277 | 419 | 249 | 3 | 14 | 429 | 13 | 416 | 9.21e-89 | 277 |
MS.gene69359.t1 | MTR_1g092880 | 35.142 | 387 | 234 | 2 | 14 | 397 | 13 | 385 | 1.41e-79 | 251 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69359.t1 | AT5G42210 | 57.309 | 431 | 183 | 1 | 7 | 437 | 3 | 432 | 0.0 | 517 |
MS.gene69359.t1 | AT5G42210 | 56.888 | 392 | 168 | 1 | 7 | 398 | 3 | 393 | 9.70e-164 | 467 |
MS.gene69359.t1 | AT2G16980 | 44.662 | 459 | 220 | 3 | 3 | 437 | 13 | 461 | 1.67e-138 | 405 |
MS.gene69359.t1 | AT2G16980 | 44.518 | 456 | 219 | 3 | 6 | 437 | 1 | 446 | 2.88e-137 | 402 |
MS.gene69359.t1 | AT2G16990 | 48.936 | 423 | 201 | 4 | 13 | 422 | 7 | 427 | 8.43e-137 | 400 |
MS.gene69359.t1 | AT2G16990 | 48.513 | 437 | 210 | 4 | 13 | 436 | 7 | 441 | 6.25e-136 | 398 |
MS.gene69359.t1 | AT2G16990 | 48.513 | 437 | 210 | 4 | 13 | 436 | 7 | 441 | 6.25e-136 | 398 |
MS.gene69359.t1 | AT2G16970 | 45.067 | 446 | 229 | 3 | 6 | 436 | 1 | 445 | 2.16e-135 | 397 |
MS.gene69359.t1 | AT2G16980 | 44.444 | 459 | 220 | 4 | 3 | 437 | 13 | 460 | 1.08e-133 | 393 |
MS.gene69359.t1 | AT2G16990 | 48.000 | 400 | 193 | 4 | 13 | 399 | 7 | 404 | 1.24e-124 | 367 |
MS.gene69359.t1 | AT2G16990 | 48.000 | 400 | 193 | 4 | 13 | 399 | 7 | 404 | 1.24e-124 | 367 |
MS.gene69359.t1 | AT2G16980 | 43.095 | 420 | 205 | 3 | 3 | 398 | 13 | 422 | 8.45e-120 | 356 |
MS.gene69359.t1 | AT2G16990 | 45.538 | 437 | 196 | 5 | 13 | 436 | 7 | 414 | 2.72e-119 | 355 |
MS.gene69359.t1 | AT2G16970 | 43.627 | 408 | 214 | 3 | 6 | 398 | 1 | 407 | 1.77e-117 | 349 |
MS.gene69359.t1 | AT2G16970 | 43.627 | 408 | 214 | 3 | 6 | 398 | 1 | 407 | 1.77e-117 | 349 |
MS.gene69359.t1 | AT2G16970 | 42.453 | 424 | 228 | 3 | 6 | 414 | 1 | 423 | 5.02e-117 | 350 |
MS.gene69359.t1 | AT2G16980 | 41.071 | 448 | 202 | 5 | 3 | 398 | 13 | 450 | 1.92e-115 | 346 |
MS.gene69359.t1 | AT2G16970 | 43.081 | 383 | 202 | 3 | 6 | 373 | 1 | 382 | 8.00e-106 | 319 |
MS.gene69359.t1 | AT2G16990 | 46.556 | 363 | 171 | 5 | 13 | 354 | 7 | 367 | 1.62e-103 | 313 |
MS.gene69359.t1 | AT2G16990 | 46.556 | 363 | 171 | 5 | 13 | 354 | 7 | 367 | 1.62e-103 | 313 |
MS.gene69359.t1 | AT2G16970 | 41.282 | 390 | 208 | 4 | 6 | 380 | 1 | 384 | 2.22e-101 | 307 |
MS.gene69359.t1 | AT2G16970 | 43.417 | 357 | 186 | 3 | 6 | 347 | 1 | 356 | 7.87e-100 | 303 |
MS.gene69359.t1 | AT2G16980 | 41.124 | 338 | 165 | 3 | 123 | 437 | 1 | 327 | 1.40e-81 | 255 |
MS.gene69359.t1 | AT2G16970 | 54.598 | 174 | 78 | 1 | 6 | 178 | 1 | 174 | 1.57e-57 | 193 |
MS.gene69359.t1 | AT2G16970 | 49.390 | 164 | 83 | 0 | 273 | 436 | 175 | 338 | 4.08e-51 | 176 |
Find 94 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGACTTAATGATCATTTC+TGG | 0.173185 | 3.3:+93685629 | MS.gene69359:CDS |
TTGTGTGCAGTATTACTTAA+AGG | 0.198024 | 3.3:+93685577 | MS.gene69359:intron |
CTTGCAGATGTTGGCCTTCA+TGG | 0.200217 | 3.3:+93685457 | MS.gene69359:CDS |
ACTTTCCACTCACCCGTTAA+TGG | 0.208512 | 3.3:-93686723 | None:intergenic |
GCTTGTGATGATGCCCATTT+TGG | 0.228414 | 3.3:+93683203 | MS.gene69359:CDS |
ATCAGAGAGATCACCCAAAA+TGG | 0.242550 | 3.3:-93683217 | None:intergenic |
GCACTGCTTCTTCGACCTTC+TGG | 0.250970 | 3.3:-93684519 | None:intergenic |
GGTGATCTCTCTGATAAGTA+TGG | 0.311306 | 3.3:+93683225 | MS.gene69359:CDS |
GGCTTTCCTTGTGAAATGAT+TGG | 0.315353 | 3.3:-93684806 | None:intergenic |
CTGAAGCCAGGAAAATTAAA+AGG | 0.317779 | 3.3:-93686840 | None:intergenic |
ATGATCATTTCTGGTATTGC+AGG | 0.320953 | 3.3:+93685638 | MS.gene69359:CDS |
GCTTTCCTTGTGAAATGATT+GGG | 0.321252 | 3.3:-93684805 | None:intergenic |
GGGATAATCATGAGGGTCAT+AGG | 0.323838 | 3.3:-93683270 | None:intergenic |
ATGGAGAAATTGAATATGTA+TGG | 0.326739 | 3.3:+93677964 | MS.gene69359:CDS |
AATCATGAGTGGGAGAATTA+TGG | 0.327479 | 3.3:+93677945 | None:intergenic |
CTTGGCTTTCTCTCCATTAA+CGG | 0.331892 | 3.3:+93686710 | MS.gene69359:CDS |
TCATAATTTATCGACATTCA+TGG | 0.337515 | 3.3:+93678017 | MS.gene69359:CDS |
AGTGCATTTGGAGTTCTTTC+AGG | 0.349547 | 3.3:+93684537 | MS.gene69359:CDS |
GGTCGAAGAAGCAGTGCATT+TGG | 0.349597 | 3.3:+93684525 | MS.gene69359:CDS |
TATGTCCATCTAACTCAAAA+TGG | 0.361400 | 3.3:-93687018 | None:intergenic |
AGGGCTCAAGGTTGCATCTC+AGG | 0.406266 | 3.3:+93686657 | MS.gene69359:CDS |
TTGGCTTTCTCTCCATTAAC+GGG | 0.411542 | 3.3:+93686711 | MS.gene69359:CDS |
AAGTGAGCATTCATCTTGTC+CGG | 0.414098 | 3.3:-93678082 | None:intergenic |
ACAGCATAGCATGGTCCTCT+TGG | 0.414980 | 3.3:+93685989 | MS.gene69359:CDS |
AAAGGAGGTTATATCTCTTA+AGG | 0.419562 | 3.3:-93684891 | None:intergenic |
TTCAGCAACCTTGCAGATGT+TGG | 0.424383 | 3.3:+93685448 | MS.gene69359:CDS |
GACCCTCATGATTATCCCCT+TGG | 0.424391 | 3.3:+93683275 | MS.gene69359:CDS |
GGCTTCAGTATAATGTGTAT+TGG | 0.431166 | 3.3:+93686855 | MS.gene69359:CDS |
TGCACATATTGTATCTCCCT+TGG | 0.435532 | 3.3:+93686692 | MS.gene69359:CDS |
AGCTCTATTTCTATCTGAAA+AGG | 0.445760 | 3.3:+93686815 | MS.gene69359:intron |
GAGAACATTGCAGCAGCATA+AGG | 0.448056 | 3.3:-93686190 | None:intergenic |
CAGCATAGCATGGTCCTCTT+GGG | 0.448466 | 3.3:+93685990 | MS.gene69359:CDS |
TGGATGATTCGCAGGCATAT+TGG | 0.454868 | 3.3:+93684233 | MS.gene69359:intron |
TTTGGAGTTCTTTCAGGGAT+AGG | 0.457164 | 3.3:+93684543 | MS.gene69359:CDS |
AAATGATTGGGGTATAAAGT+TGG | 0.469648 | 3.3:-93684793 | None:intergenic |
CTCCTACTTTGGGCGAGGCA+AGG | 0.477680 | 3.3:+93685830 | MS.gene69359:CDS |
TTCTTTCAGGGAAGGGCTCA+AGG | 0.479698 | 3.3:+93686645 | MS.gene69359:intron |
TTGAAAACCAGTGAGATAGA+TGG | 0.487866 | 3.3:-93678106 | None:intergenic |
TGCAGTATTACTTAAAGGCT+CGG | 0.491711 | 3.3:+93685582 | MS.gene69359:intron |
ATTGTTACATCGGTGATTGC+TGG | 0.492648 | 3.3:-93678045 | None:intergenic |
GTGCATTTGGAGTTCTTTCA+GGG | 0.492657 | 3.3:+93684538 | MS.gene69359:CDS |
ATCATTAACATGATTTGCGA+TGG | 0.498843 | 3.3:+93684306 | MS.gene69359:CDS |
GAGGCAAGGCTTCTTTCGAT+TGG | 0.501981 | 3.3:+93685844 | MS.gene69359:CDS |
TCACTTGCCATCTATCTCAC+TGG | 0.503898 | 3.3:+93678099 | MS.gene69359:CDS |
TATTGCAGGGACTGTGTCAC+AGG | 0.508069 | 3.3:+93685652 | MS.gene69359:CDS |
TAACCTCCTTTCTCAATAGT+AGG | 0.508494 | 3.3:+93684903 | MS.gene69359:CDS |
AATGTGTATTGGAATTGCTT+CGG | 0.510199 | 3.3:+93686866 | MS.gene69359:CDS |
GAGCTCAATGCTTTCAAAAG+TGG | 0.510207 | 3.3:-93684869 | None:intergenic |
ACCCTCATGATTATCCCCTT+GGG | 0.512456 | 3.3:+93683276 | MS.gene69359:CDS |
GGATAATCATGAGGGTCATA+GGG | 0.513412 | 3.3:-93683269 | None:intergenic |
TCAGAGAGATCACCCAAAAT+GGG | 0.513615 | 3.3:-93683216 | None:intergenic |
GGTCATAGGGAGCGTAAGAA+TGG | 0.513622 | 3.3:-93683256 | None:intergenic |
CTTTCCTTGTGAAATGATTG+GGG | 0.515488 | 3.3:-93684804 | None:intergenic |
ACAAGTTGATCCCCGTGAGC+AGG | 0.529631 | 3.3:+93686370 | MS.gene69359:CDS |
CTCTGATAAGTATGGGAGGA+AGG | 0.534368 | 3.3:+93683233 | MS.gene69359:CDS |
TTAACATGATACCTGCTCAC+GGG | 0.541820 | 3.3:-93686381 | None:intergenic |
GTCACACCTACTATTGAGAA+AGG | 0.547596 | 3.3:-93684909 | None:intergenic |
TGATCATTTCTGGTATTGCA+GGG | 0.548846 | 3.3:+93685639 | MS.gene69359:CDS |
ACAATGGCTGCTCTTTGTCC+CGG | 0.553213 | 3.3:+93678063 | MS.gene69359:CDS |
ACCAGAAATGATCATTAAGT+CGG | 0.565383 | 3.3:-93685630 | None:intergenic |
GAAAGACGGTCATGAAGAGA+TGG | 0.572645 | 3.3:-93677993 | None:intergenic |
TCCATCTAACTCAAAATGGA+AGG | 0.576928 | 3.3:-93687014 | None:intergenic |
TGGCCTTCATGGTTCAATGA+TGG | 0.579807 | 3.3:+93685468 | MS.gene69359:CDS |
AGTGAGCATTCATCTTGTCC+GGG | 0.580465 | 3.3:-93678081 | None:intergenic |
GTGATCTCTCTGATAAGTAT+GGG | 0.589147 | 3.3:+93683226 | MS.gene69359:CDS |
ATACCATCATTGAACCATGA+AGG | 0.590082 | 3.3:-93685471 | None:intergenic |
AGCCTTGCCTCGCCCAAAGT+AGG | 0.594097 | 3.3:-93685832 | None:intergenic |
TCAGAGTATGATGCTTAGAG+TGG | 0.595054 | 3.3:+93686989 | MS.gene69359:CDS |
ATACACATTATACTGAAGCC+AGG | 0.605025 | 3.3:-93686852 | None:intergenic |
ATCTCTCTGATAAGTATGGG+AGG | 0.608663 | 3.3:+93683229 | MS.gene69359:CDS |
ATTAACATGATACCTGCTCA+CGG | 0.609111 | 3.3:-93686382 | None:intergenic |
TGTTCATTTACAGCATAGCA+TGG | 0.610699 | 3.3:+93685980 | MS.gene69359:CDS |
TACCCAAGGGGATAATCATG+AGG | 0.613909 | 3.3:-93683278 | None:intergenic |
CGATAAATTATGAAGAAAGA+CGG | 0.614156 | 3.3:-93678007 | None:intergenic |
ATTAACATATAATCATGAGT+GGG | 0.615387 | 3.3:+93677935 | None:intergenic |
TGGAGAAATTGAATATGTAT+GGG | 0.616448 | 3.3:+93677965 | MS.gene69359:CDS |
AATTAACATATAATCATGAG+TGG | 0.618145 | 3.3:+93677934 | None:intergenic |
TATACCCCAATCATTTCACA+AGG | 0.622314 | 3.3:+93684800 | MS.gene69359:CDS |
AGCAATCACCGATGTAACAA+TGG | 0.634236 | 3.3:+93678047 | MS.gene69359:CDS |
AAGAGCAGCCATTGTTACAT+CGG | 0.640036 | 3.3:-93678055 | None:intergenic |
CATCGGCGACTGAATCCCGA+AGG | 0.645898 | 3.3:-93684766 | None:intergenic |
TAACATGATACCTGCTCACG+GGG | 0.648157 | 3.3:-93686380 | None:intergenic |
CGTTAATGGAGAGAAAGCCA+AGG | 0.651353 | 3.3:-93686709 | None:intergenic |
ACCCAAGGGGATAATCATGA+GGG | 0.653332 | 3.3:-93683277 | None:intergenic |
TAGGCAGATAACGTTCCAGA+AGG | 0.656602 | 3.3:+93684504 | MS.gene69359:intron |
CATGAAGGCCAACATCTGCA+AGG | 0.659193 | 3.3:-93685456 | None:intergenic |
ACGTAAGCTAGAGCGAGGCA+AGG | 0.659385 | 3.3:-93684336 | None:intergenic |
CACCTGAAAAGTTTGAGCAG+CGG | 0.670212 | 3.3:-93684610 | None:intergenic |
GTTAATGGAGAGAAAGCCAA+GGG | 0.684337 | 3.3:-93686708 | None:intergenic |
ACACCTACTATTGAGAAAGG+AGG | 0.685291 | 3.3:-93684906 | None:intergenic |
CAGCAAAAGACATACCCAAG+AGG | 0.697205 | 3.3:-93686004 | None:intergenic |
TAACAACGTAAGCTAGAGCG+AGG | 0.704711 | 3.3:-93684341 | None:intergenic |
TGTTGCACACACAAACGCTG+AGG | 0.726307 | 3.3:-93684568 | None:intergenic |
AGTAGAAAGAAGTACCCAAG+GGG | 0.729323 | 3.3:-93683290 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 93677949 | 93687031 | 93677949 | ID=MS.gene69359 |
chr3.3 | mRNA | 93677949 | 93687031 | 93677949 | ID=MS.gene69359.t1;Parent=MS.gene69359 |
chr3.3 | exon | 93677949 | 93678134 | 93677949 | ID=MS.gene69359.t1.exon1;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93677949 | 93678134 | 93677949 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93683186 | 93683297 | 93683186 | ID=MS.gene69359.t1.exon2;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93683186 | 93683297 | 93683186 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93684247 | 93684359 | 93684247 | ID=MS.gene69359.t1.exon3;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93684247 | 93684359 | 93684247 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93684507 | 93684629 | 93684507 | ID=MS.gene69359.t1.exon4;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93684507 | 93684629 | 93684507 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93684719 | 93684924 | 93684719 | ID=MS.gene69359.t1.exon5;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93684719 | 93684924 | 93684719 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93685414 | 93685489 | 93685414 | ID=MS.gene69359.t1.exon6;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93685414 | 93685489 | 93685414 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93685587 | 93685673 | 93685587 | ID=MS.gene69359.t1.exon7;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93685587 | 93685673 | 93685587 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93685808 | 93685888 | 93685808 | ID=MS.gene69359.t1.exon8;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93685808 | 93685888 | 93685808 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93685979 | 93686011 | 93685979 | ID=MS.gene69359.t1.exon9;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93685979 | 93686011 | 93685979 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93686187 | 93686240 | 93686187 | ID=MS.gene69359.t1.exon10;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93686187 | 93686240 | 93686187 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93686350 | 93686391 | 93686350 | ID=MS.gene69359.t1.exon11;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93686350 | 93686391 | 93686350 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93686654 | 93686732 | 93686654 | ID=MS.gene69359.t1.exon12;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93686654 | 93686732 | 93686654 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93686817 | 93686887 | 93686817 | ID=MS.gene69359.t1.exon13;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93686817 | 93686887 | 93686817 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
chr3.3 | exon | 93686975 | 93687031 | 93686975 | ID=MS.gene69359.t1.exon14;Parent=MS.gene69359.t1 |
chr3.3 | CDS | 93686975 | 93687031 | 93686975 | ID=cds.MS.gene69359.t1;Parent=MS.gene69359.t1 |
Gene Sequence |
Protein sequence |