Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52801.t1 | XP_003603840.3 | 99.3 | 439 | 3 | 0 | 1 | 439 | 12 | 450 | 1.00E-239 | 839 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52801.t1 | Q5SR56 | 25.8 | 360 | 231 | 8 | 56 | 406 | 81 | 413 | 1.5e-16 | 89.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52801.t1 | G7J5X3 | 99.3 | 434 | 3 | 0 | 6 | 439 | 1 | 434 | 4.5e-237 | 829.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054713 | MS.gene52801 | 0.850718 | 1.42E-60 | -1.69E-46 |
MS.gene058042 | MS.gene52801 | 0.817422 | 3.33E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene064986 | MS.gene52801 | PPI |
MS.gene014380 | MS.gene52801 | PPI |
MS.gene064798 | MS.gene52801 | PPI |
MS.gene056267 | MS.gene52801 | PPI |
MS.gene69359 | MS.gene52801 | PPI |
MS.gene52801 | MS.gene064798 | PPI |
MS.gene029256 | MS.gene52801 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52801.t1 | MTR_3g114810 | 99.309 | 434 | 3 | 0 | 6 | 439 | 1 | 434 | 0.0 | 879 |
MS.gene52801.t1 | MTR_1g112980 | 55.172 | 435 | 184 | 4 | 6 | 438 | 1 | 426 | 3.00e-170 | 485 |
MS.gene52801.t1 | MTR_1g112980 | 53.533 | 368 | 160 | 4 | 6 | 371 | 1 | 359 | 7.17e-137 | 397 |
MS.gene52801.t1 | MTR_1g112980 | 52.958 | 355 | 156 | 4 | 6 | 358 | 1 | 346 | 4.57e-129 | 379 |
MS.gene52801.t1 | MTR_1g092880 | 36.019 | 422 | 253 | 2 | 14 | 432 | 13 | 420 | 1.23e-90 | 281 |
MS.gene52801.t1 | MTR_1g092870 | 35.800 | 419 | 258 | 2 | 14 | 432 | 13 | 420 | 4.45e-90 | 280 |
MS.gene52801.t1 | MTR_1g092880 | 36.277 | 419 | 249 | 3 | 14 | 429 | 13 | 416 | 5.62e-89 | 277 |
MS.gene52801.t1 | MTR_1g092880 | 35.142 | 387 | 234 | 2 | 14 | 397 | 13 | 385 | 7.18e-80 | 252 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52801.t1 | AT5G42210 | 57.309 | 431 | 183 | 1 | 7 | 437 | 3 | 432 | 0.0 | 516 |
MS.gene52801.t1 | AT5G42210 | 56.888 | 392 | 168 | 1 | 7 | 398 | 3 | 393 | 2.92e-163 | 466 |
MS.gene52801.t1 | AT2G16980 | 44.662 | 459 | 220 | 3 | 3 | 437 | 13 | 461 | 7.17e-138 | 404 |
MS.gene52801.t1 | AT2G16990 | 49.173 | 423 | 200 | 4 | 13 | 422 | 7 | 427 | 1.60e-137 | 402 |
MS.gene52801.t1 | AT2G16980 | 44.518 | 456 | 219 | 3 | 6 | 437 | 1 | 446 | 9.96e-137 | 400 |
MS.gene52801.t1 | AT2G16990 | 48.741 | 437 | 209 | 4 | 13 | 436 | 7 | 441 | 1.97e-136 | 399 |
MS.gene52801.t1 | AT2G16990 | 48.741 | 437 | 209 | 4 | 13 | 436 | 7 | 441 | 1.97e-136 | 399 |
MS.gene52801.t1 | AT2G16970 | 45.067 | 446 | 229 | 3 | 6 | 436 | 1 | 445 | 6.61e-135 | 396 |
MS.gene52801.t1 | AT2G16980 | 44.444 | 459 | 220 | 4 | 3 | 437 | 13 | 460 | 3.71e-133 | 392 |
MS.gene52801.t1 | AT2G16990 | 48.250 | 400 | 192 | 4 | 13 | 399 | 7 | 404 | 3.51e-125 | 369 |
MS.gene52801.t1 | AT2G16990 | 48.250 | 400 | 192 | 4 | 13 | 399 | 7 | 404 | 3.51e-125 | 369 |
MS.gene52801.t1 | AT2G16990 | 45.767 | 437 | 195 | 5 | 13 | 436 | 7 | 414 | 6.29e-120 | 357 |
MS.gene52801.t1 | AT2G16980 | 43.095 | 420 | 205 | 3 | 3 | 398 | 13 | 422 | 2.47e-119 | 355 |
MS.gene52801.t1 | AT2G16970 | 43.627 | 408 | 214 | 3 | 6 | 398 | 1 | 407 | 5.90e-117 | 348 |
MS.gene52801.t1 | AT2G16970 | 43.627 | 408 | 214 | 3 | 6 | 398 | 1 | 407 | 5.90e-117 | 348 |
MS.gene52801.t1 | AT2G16970 | 42.453 | 424 | 228 | 3 | 6 | 414 | 1 | 423 | 1.23e-116 | 348 |
MS.gene52801.t1 | AT2G16980 | 41.071 | 448 | 202 | 5 | 3 | 398 | 13 | 450 | 4.98e-115 | 345 |
MS.gene52801.t1 | AT2G16970 | 43.081 | 383 | 202 | 3 | 6 | 373 | 1 | 382 | 2.55e-105 | 317 |
MS.gene52801.t1 | AT2G16990 | 46.832 | 363 | 170 | 5 | 13 | 354 | 7 | 367 | 5.68e-104 | 315 |
MS.gene52801.t1 | AT2G16990 | 46.832 | 363 | 170 | 5 | 13 | 354 | 7 | 367 | 5.68e-104 | 315 |
MS.gene52801.t1 | AT2G16970 | 41.282 | 390 | 208 | 4 | 6 | 380 | 1 | 384 | 7.79e-101 | 306 |
MS.gene52801.t1 | AT2G16970 | 43.417 | 357 | 186 | 3 | 6 | 347 | 1 | 356 | 2.40e-99 | 302 |
MS.gene52801.t1 | AT2G16980 | 41.124 | 338 | 165 | 3 | 123 | 437 | 1 | 327 | 4.59e-81 | 254 |
MS.gene52801.t1 | AT2G16970 | 54.598 | 174 | 78 | 1 | 6 | 178 | 1 | 174 | 5.20e-57 | 192 |
MS.gene52801.t1 | AT2G16970 | 49.390 | 164 | 83 | 0 | 273 | 436 | 175 | 338 | 4.68e-51 | 176 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGACTTAATGATCATTTC+TGG | 0.173185 | 3.1:+90891051 | MS.gene52801:CDS |
TTGTGTGCAGTATTACTTAA+AGG | 0.198024 | 3.1:+90890999 | MS.gene52801:intron |
CTTGCAGATGTTGGCCTTCA+TGG | 0.200217 | 3.1:+90890647 | MS.gene52801:CDS |
ACTTTCCACTCACCCGTTAA+TGG | 0.208512 | 3.1:-90892137 | None:intergenic |
GCTTGTGATGATGCCCATTT+TGG | 0.228414 | 3.1:+90888387 | MS.gene52801:CDS |
ATCAGAGAGATCACCCAAAA+TGG | 0.242550 | 3.1:-90888401 | None:intergenic |
GCACTGCTTCTTCGACCTTC+TGG | 0.250970 | 3.1:-90889709 | None:intergenic |
GGTGATCTCTCTGATAAGTA+TGG | 0.311306 | 3.1:+90888409 | MS.gene52801:CDS |
GGCTTTCCTTGTGAAATGAT+TGG | 0.315353 | 3.1:-90889996 | None:intergenic |
CTGAAGCCAGGAAAATTAAA+AGG | 0.317779 | 3.1:-90892254 | None:intergenic |
ATGATCATTTCTGGTATTGC+AGG | 0.320953 | 3.1:+90891060 | MS.gene52801:CDS |
GCTTTCCTTGTGAAATGATT+GGG | 0.321252 | 3.1:-90889995 | None:intergenic |
GGGATAATCATGAGGGTCAT+AGG | 0.323838 | 3.1:-90888454 | None:intergenic |
ATGGAGAAATTGAATATGTA+TGG | 0.326739 | 3.1:+90884355 | MS.gene52801:CDS |
AATCATGAGTGGGAGAATTA+TGG | 0.327479 | 3.1:+90884336 | None:intergenic |
CTTGGCTTTCTCTCCATTAA+CGG | 0.331892 | 3.1:+90892124 | MS.gene52801:CDS |
TCATAATTTATCGACATTCA+TGG | 0.337515 | 3.1:+90884408 | MS.gene52801:CDS |
AGTGCATTTGGAGTTCTTTC+AGG | 0.349547 | 3.1:+90889727 | MS.gene52801:CDS |
GGTCGAAGAAGCAGTGCATT+TGG | 0.349597 | 3.1:+90889715 | MS.gene52801:CDS |
TATGTCCATCTAACTCAAAA+TGG | 0.361400 | 3.1:-90892432 | None:intergenic |
AGGGCTCAAGGTTGCATCTC+AGG | 0.406266 | 3.1:+90892071 | MS.gene52801:CDS |
TTGGCTTTCTCTCCATTAAC+GGG | 0.411542 | 3.1:+90892125 | MS.gene52801:CDS |
AAGTGAGCATTCATCTTGTC+CGG | 0.414098 | 3.1:-90884473 | None:intergenic |
ACAGCATAGCATGGTCCTCT+TGG | 0.414980 | 3.1:+90891411 | MS.gene52801:CDS |
AAAGGAGGTTATATCTCTTA+AGG | 0.419562 | 3.1:-90890081 | None:intergenic |
TTCAGCAACCTTGCAGATGT+TGG | 0.424383 | 3.1:+90890638 | MS.gene52801:CDS |
GACCCTCATGATTATCCCCT+TGG | 0.424391 | 3.1:+90888459 | MS.gene52801:CDS |
GGCTTCAGTATAATGTGTAT+TGG | 0.431166 | 3.1:+90892269 | MS.gene52801:CDS |
AACGTAAGCTAGAGCGAGGC+AGG | 0.431328 | 3.1:-90889527 | None:intergenic |
TGCACATATTGTATCTCCCT+TGG | 0.435532 | 3.1:+90892106 | MS.gene52801:CDS |
AGCTCTATTTCTATCTGAAA+AGG | 0.445760 | 3.1:+90892229 | MS.gene52801:intron |
GAGAACATTGCAGCAGCATA+AGG | 0.448056 | 3.1:-90891604 | None:intergenic |
CAGCATAGCATGGTCCTCTT+GGG | 0.448466 | 3.1:+90891412 | MS.gene52801:CDS |
TGGATGATTCGCAGGCATAT+TGG | 0.454868 | 3.1:+90889423 | MS.gene52801:intron |
TTTGGAGTTCTTTCAGGGAT+AGG | 0.457164 | 3.1:+90889733 | MS.gene52801:CDS |
AAATGATTGGGGTATAAAGT+TGG | 0.469648 | 3.1:-90889983 | None:intergenic |
CTCCTACTTTGGGCGAGGCA+AGG | 0.477680 | 3.1:+90891253 | MS.gene52801:CDS |
TTCTTTCAGGGAAGGGCTCA+AGG | 0.479698 | 3.1:+90892059 | MS.gene52801:intron |
TTGAAAACCAGTGAGATAGA+TGG | 0.487866 | 3.1:-90884497 | None:intergenic |
TGCAGTATTACTTAAAGGCT+CGG | 0.491711 | 3.1:+90891004 | MS.gene52801:intron |
ATTGTTACATCGGTGATTGC+TGG | 0.492648 | 3.1:-90884436 | None:intergenic |
GTGCATTTGGAGTTCTTTCA+GGG | 0.492657 | 3.1:+90889728 | MS.gene52801:CDS |
ATCATTAACATGATTTGCGA+TGG | 0.498843 | 3.1:+90889496 | MS.gene52801:CDS |
GAGGCAAGGCTTCTTTCGAT+TGG | 0.501981 | 3.1:+90891267 | MS.gene52801:CDS |
TCACTTGCCATCTATCTCAC+TGG | 0.503898 | 3.1:+90884490 | MS.gene52801:CDS |
TATTGCAGGGACTGTGTCAC+AGG | 0.508069 | 3.1:+90891074 | MS.gene52801:CDS |
TAACCTCCTTTCTCAATAGT+AGG | 0.508494 | 3.1:+90890093 | MS.gene52801:CDS |
AATGTGTATTGGAATTGCTT+CGG | 0.510199 | 3.1:+90892280 | MS.gene52801:CDS |
GAGCTCAATGCTTTCAAAAG+TGG | 0.510207 | 3.1:-90890059 | None:intergenic |
ACCCTCATGATTATCCCCTT+GGG | 0.512456 | 3.1:+90888460 | MS.gene52801:CDS |
GGATAATCATGAGGGTCATA+GGG | 0.513412 | 3.1:-90888453 | None:intergenic |
TCAGAGAGATCACCCAAAAT+GGG | 0.513615 | 3.1:-90888400 | None:intergenic |
GGTCATAGGGAGCGTAAGAA+TGG | 0.513622 | 3.1:-90888440 | None:intergenic |
CTTTCCTTGTGAAATGATTG+GGG | 0.515488 | 3.1:-90889994 | None:intergenic |
ACAAGTTGATCCCCGTGAGC+AGG | 0.529631 | 3.1:+90891784 | MS.gene52801:CDS |
CTCTGATAAGTATGGGAGGA+AGG | 0.534368 | 3.1:+90888417 | MS.gene52801:CDS |
TTAACATGATACCTGCTCAC+GGG | 0.541820 | 3.1:-90891795 | None:intergenic |
GTCACACCTACTATTGAGAA+AGG | 0.547596 | 3.1:-90890099 | None:intergenic |
TGATCATTTCTGGTATTGCA+GGG | 0.548846 | 3.1:+90891061 | MS.gene52801:CDS |
ACAATGGCTGCTCTTTGTCC+CGG | 0.553213 | 3.1:+90884454 | MS.gene52801:CDS |
ACCAGAAATGATCATTAAGT+CGG | 0.565383 | 3.1:-90891052 | None:intergenic |
GAAAGACGGTCATGAAGAGA+TGG | 0.572645 | 3.1:-90884384 | None:intergenic |
TCCATCTAACTCAAAATGGA+AGG | 0.576928 | 3.1:-90892428 | None:intergenic |
TGGCCTTCATGGTTCAATGA+TGG | 0.579807 | 3.1:+90890658 | MS.gene52801:CDS |
AGTGAGCATTCATCTTGTCC+GGG | 0.580465 | 3.1:-90884472 | None:intergenic |
GTGATCTCTCTGATAAGTAT+GGG | 0.589147 | 3.1:+90888410 | MS.gene52801:CDS |
ATACCATCATTGAACCATGA+AGG | 0.590082 | 3.1:-90890661 | None:intergenic |
AGCCTTGCCTCGCCCAAAGT+AGG | 0.594097 | 3.1:-90891255 | None:intergenic |
TCAGAGTATGATGCTTAGAG+TGG | 0.595054 | 3.1:+90892403 | MS.gene52801:CDS |
ATACACATTATACTGAAGCC+AGG | 0.605025 | 3.1:-90892266 | None:intergenic |
ATCTCTCTGATAAGTATGGG+AGG | 0.608663 | 3.1:+90888413 | MS.gene52801:CDS |
ATTAACATGATACCTGCTCA+CGG | 0.609111 | 3.1:-90891796 | None:intergenic |
TGTTCATTTACAGCATAGCA+TGG | 0.610699 | 3.1:+90891402 | MS.gene52801:CDS |
TACCCAAGGGGATAATCATG+AGG | 0.613909 | 3.1:-90888462 | None:intergenic |
CGATAAATTATGAAGAAAGA+CGG | 0.614156 | 3.1:-90884398 | None:intergenic |
ATTAACATATAATCATGAGT+GGG | 0.615387 | 3.1:+90884326 | None:intergenic |
TGGAGAAATTGAATATGTAT+GGG | 0.616448 | 3.1:+90884356 | MS.gene52801:CDS |
AATTAACATATAATCATGAG+TGG | 0.618145 | 3.1:+90884325 | None:intergenic |
TATACCCCAATCATTTCACA+AGG | 0.622314 | 3.1:+90889990 | MS.gene52801:CDS |
AGCAATCACCGATGTAACAA+TGG | 0.634236 | 3.1:+90884438 | MS.gene52801:CDS |
AAGAGCAGCCATTGTTACAT+CGG | 0.640036 | 3.1:-90884446 | None:intergenic |
TAACATGATACCTGCTCACG+GGG | 0.648157 | 3.1:-90891794 | None:intergenic |
CGTTAATGGAGAGAAAGCCA+AGG | 0.651353 | 3.1:-90892123 | None:intergenic |
ACCCAAGGGGATAATCATGA+GGG | 0.653332 | 3.1:-90888461 | None:intergenic |
CATCTGCGACTGAATCCCGA+AGG | 0.656063 | 3.1:-90889956 | None:intergenic |
TAGGCAGATAACGTTCCAGA+AGG | 0.656602 | 3.1:+90889694 | MS.gene52801:intron |
CATGAAGGCCAACATCTGCA+AGG | 0.659193 | 3.1:-90890646 | None:intergenic |
CACCTGAAAAGTTTGAGCAG+CGG | 0.670212 | 3.1:-90889800 | None:intergenic |
ACGTAAGCTAGAGCGAGGCA+GGG | 0.674087 | 3.1:-90889526 | None:intergenic |
GTTAATGGAGAGAAAGCCAA+GGG | 0.684337 | 3.1:-90892122 | None:intergenic |
ACACCTACTATTGAGAAAGG+AGG | 0.685291 | 3.1:-90890096 | None:intergenic |
CAGCAAAAGACATACCCAAG+AGG | 0.697205 | 3.1:-90891426 | None:intergenic |
TAACAACGTAAGCTAGAGCG+AGG | 0.704711 | 3.1:-90889531 | None:intergenic |
TGTTGCACACACAAACGCTG+AGG | 0.726307 | 3.1:-90889758 | None:intergenic |
AGTAGAAAGAAGTACCCAAG+GGG | 0.729323 | 3.1:-90888474 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 90884340 | 90892445 | 90884340 | ID=MS.gene52801 |
chr3.1 | mRNA | 90884340 | 90892445 | 90884340 | ID=MS.gene52801.t1;Parent=MS.gene52801 |
chr3.1 | exon | 90884340 | 90884525 | 90884340 | ID=MS.gene52801.t1.exon1;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90884340 | 90884525 | 90884340 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90888370 | 90888481 | 90888370 | ID=MS.gene52801.t1.exon2;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90888370 | 90888481 | 90888370 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90889437 | 90889549 | 90889437 | ID=MS.gene52801.t1.exon3;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90889437 | 90889549 | 90889437 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90889697 | 90889819 | 90889697 | ID=MS.gene52801.t1.exon4;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90889697 | 90889819 | 90889697 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90889909 | 90890114 | 90889909 | ID=MS.gene52801.t1.exon5;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90889909 | 90890114 | 90889909 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90890604 | 90890679 | 90890604 | ID=MS.gene52801.t1.exon6;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90890604 | 90890679 | 90890604 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90891009 | 90891095 | 90891009 | ID=MS.gene52801.t1.exon7;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90891009 | 90891095 | 90891009 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90891231 | 90891311 | 90891231 | ID=MS.gene52801.t1.exon8;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90891231 | 90891311 | 90891231 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90891401 | 90891433 | 90891401 | ID=MS.gene52801.t1.exon9;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90891401 | 90891433 | 90891401 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90891601 | 90891654 | 90891601 | ID=MS.gene52801.t1.exon10;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90891601 | 90891654 | 90891601 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90891764 | 90891805 | 90891764 | ID=MS.gene52801.t1.exon11;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90891764 | 90891805 | 90891764 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90892068 | 90892146 | 90892068 | ID=MS.gene52801.t1.exon12;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90892068 | 90892146 | 90892068 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90892231 | 90892301 | 90892231 | ID=MS.gene52801.t1.exon13;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90892231 | 90892301 | 90892231 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
chr3.1 | exon | 90892389 | 90892445 | 90892389 | ID=MS.gene52801.t1.exon14;Parent=MS.gene52801.t1 |
chr3.1 | CDS | 90892389 | 90892445 | 90892389 | ID=cds.MS.gene52801.t1;Parent=MS.gene52801.t1 |
Gene Sequence |
Protein sequence |