Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06543.t1 | XP_013461490.1 | 92.5 | 871 | 64 | 1 | 1 | 870 | 1 | 871 | 0.00E+00 | 1443.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06543.t1 | Q9FHK4 | 39.7 | 131 | 68 | 1 | 639 | 769 | 470 | 589 | 1.5e-17 | 93.2 |
| MS.gene06543.t1 | Q9FHK4 | 41.7 | 60 | 35 | 0 | 1 | 60 | 1 | 60 | 2.1e-06 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06543.t1 | A0A072VBG6 | 92.5 | 871 | 64 | 1 | 1 | 870 | 1 | 871 | 0.0e+00 | 1443.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene06543 | 0.948316 | 1.20E-106 | -1.69E-46 |
| MS.gene050669 | MS.gene06543 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene050961 | MS.gene06543 | 0.83213 | 1.13E-55 | -1.69E-46 |
| MS.gene052570 | MS.gene06543 | 0.800434 | 1.44E-48 | -1.69E-46 |
| MS.gene053601 | MS.gene06543 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene06543 | 0.827875 | 1.23E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene06543 | 0.820628 | 6.20E-53 | -1.69E-46 |
| MS.gene060413 | MS.gene06543 | 0.804328 | 2.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06543.t1 | MTR_3g093780 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| MS.gene06543.t1 | MTR_7g107300 | 60.465 | 129 | 44 | 3 | 458 | 580 | 4 | 131 | 2.21e-37 | 138 |
| MS.gene06543.t1 | MTR_5g068060 | 52.128 | 94 | 43 | 2 | 1 | 92 | 1 | 94 | 3.74e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06543.t1 | AT5G05190 | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.57e-21 | 99.4 |
| MS.gene06543.t1 | AT3G56410 | 45.714 | 70 | 38 | 0 | 645 | 714 | 223 | 292 | 6.76e-13 | 73.6 |
| MS.gene06543.t1 | AT3G56410 | 45.714 | 70 | 38 | 0 | 645 | 714 | 312 | 381 | 8.35e-13 | 73.2 |
| MS.gene06543.t1 | AT3G56410 | 45.714 | 70 | 38 | 0 | 645 | 714 | 359 | 428 | 9.09e-13 | 73.2 |
Find 192 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATATTATGATGATTA+TGG | 0.138733 | 3.2:+78679818 | MS.gene06543:CDS |
| GCAGATGCGGTGTTGATTTC+TGG | 0.149630 | 3.2:+78678171 | MS.gene06543:CDS |
| GAAATCACTGAAACTAATTT+TGG | 0.164374 | 3.2:+78678129 | MS.gene06543:CDS |
| TGTAACTGGCTTCTCTTTAT+TGG | 0.169718 | 3.2:-78678211 | None:intergenic |
| ACATTTAACTATCCGAATTT+TGG | 0.174552 | 3.2:-78677115 | None:intergenic |
| TCACAGTGAGTGATGTTATT+TGG | 0.210386 | 3.2:-78677982 | None:intergenic |
| TCAAAGTTTAATGGTGTTCT+TGG | 0.238441 | 3.2:+78678609 | MS.gene06543:CDS |
| GTTTCAGTGATTTCCATTTC+AGG | 0.261394 | 3.2:-78678120 | None:intergenic |
| GATCATAGTTCAAAGTTTAA+TGG | 0.262570 | 3.2:+78678600 | MS.gene06543:CDS |
| GGAAGAAGTTGCCGGCATTT+AGG | 0.282712 | 3.2:-78677138 | None:intergenic |
| AATCCTGAAGTGGAAATTAT+TGG | 0.286338 | 3.2:+78678243 | MS.gene06543:CDS |
| TCAAGAGAGTGTTATTTAGA+TGG | 0.287618 | 3.2:+78677835 | MS.gene06543:CDS |
| GGATTTGCACCTTCTGTAAC+TGG | 0.294631 | 3.2:-78678225 | None:intergenic |
| GAACAAATTAAGTCCTCTTT+TGG | 0.307285 | 3.2:-78678048 | None:intergenic |
| TTCCAGTAATTTCCCCTTCA+AGG | 0.315354 | 3.2:-78678380 | None:intergenic |
| TTTCCAATAATTTCCACTTC+AGG | 0.322328 | 3.2:-78678246 | None:intergenic |
| TGCCTTCTGAGTGACAATTT+AGG | 0.324245 | 3.2:-78677937 | None:intergenic |
| TTTCATATTATGATGATTAT+GGG | 0.327417 | 3.2:+78679819 | MS.gene06543:CDS |
| TGGAGCTGATTTATCACTAT+TGG | 0.334684 | 3.2:-78678346 | None:intergenic |
| TACAGCTAAGAAACAAAGTT+TGG | 0.337502 | 3.2:+78677666 | MS.gene06543:intron |
| ATTATTGGAAATGATTTAGA+AGG | 0.342099 | 3.2:+78678258 | MS.gene06543:CDS |
| ATTGAGGAGATAAGTAATAA+TGG | 0.344048 | 3.2:+78678006 | MS.gene06543:CDS |
| ATAGCTGATTGGTCATTGTT+AGG | 0.346593 | 3.2:-78678480 | None:intergenic |
| TGCATTGATTTCTTGCATAC+TGG | 0.352905 | 3.2:-78677704 | None:intergenic |
| TGTTGTGTCCACTTCAGATT+TGG | 0.354447 | 3.2:-78678511 | None:intergenic |
| CTTGTTGCTTCAGCTGAATA+AGG | 0.358091 | 3.2:-78679269 | None:intergenic |
| AGCTCCTCGTATGGGGATCT+TGG | 0.360440 | 3.2:+78678747 | MS.gene06543:CDS |
| GTTGAGCTAGGAGAGACATT+TGG | 0.361833 | 3.2:-78679932 | None:intergenic |
| TCATCATGCACTCCATTTGA+TGG | 0.364226 | 3.2:-78678948 | None:intergenic |
| AACCTTGAAGGGGAAATTAC+TGG | 0.369393 | 3.2:+78678378 | MS.gene06543:CDS |
| TTGAGCTAGGAGAGACATTT+GGG | 0.377528 | 3.2:-78679931 | None:intergenic |
| TTCATTACAAAGACCAAAAG+AGG | 0.384209 | 3.2:+78678035 | MS.gene06543:CDS |
| ATAATCATCATAATATGAAA+TGG | 0.389072 | 3.2:-78679816 | None:intergenic |
| CAGGAAATTGTCAGCAGAAA+AGG | 0.389892 | 3.2:+78680054 | MS.gene06543:CDS |
| CCTTCAAGGTTCGTACCAAC+TGG | 0.397424 | 3.2:-78678366 | None:intergenic |
| TTTCCTGGTTTCAGACATAC+TGG | 0.398983 | 3.2:-78680038 | None:intergenic |
| CTGTGGTGAGGAAATACTTA+AGG | 0.400170 | 3.2:+78679474 | MS.gene06543:CDS |
| GATAGGGGACAGACCTGAAA+TGG | 0.402925 | 3.2:+78678107 | MS.gene06543:CDS |
| TATGACAAATCAGCTCTGAT+AGG | 0.403629 | 3.2:+78678090 | MS.gene06543:CDS |
| CTCTCCTAGCTCAACATTCA+AGG | 0.405053 | 3.2:+78679940 | MS.gene06543:CDS |
| TCTTCATCTGTGAACTTGAA+TGG | 0.406814 | 3.2:-78677889 | None:intergenic |
| GCCCCTCTTATCACTTTACT+TGG | 0.409919 | 3.2:-78680130 | None:intergenic |
| GTTCACAGATGAAGAAGAAC+TGG | 0.414179 | 3.2:+78677897 | MS.gene06543:CDS |
| CTGTGCTGTCTTTCATGACA+TGG | 0.414712 | 3.2:-78678806 | None:intergenic |
| TCCAACATGAAGATTTATAC+AGG | 0.415572 | 3.2:+78679369 | MS.gene06543:CDS |
| AACATATTTACCACCATTCA+AGG | 0.420023 | 3.2:-78679906 | None:intergenic |
| ACAGAATATCCTTGAGGCTC+TGG | 0.425857 | 3.2:-78677159 | None:intergenic |
| ATTTGTTCATCTGATGAAGA+TGG | 0.427120 | 3.2:+78678063 | MS.gene06543:CDS |
| GTAAGGTGGTTACCAAAATT+CGG | 0.427969 | 3.2:+78677103 | MS.gene06543:CDS |
| CAAGAAATCAATGCAGCTCC+TGG | 0.432286 | 3.2:+78677712 | MS.gene06543:CDS |
| CCTTTCTCATCGAATACTAT+AGG | 0.433792 | 3.2:+78679692 | MS.gene06543:CDS |
| GAGTGTTATTTAGATGGAAA+TGG | 0.434349 | 3.2:+78677841 | MS.gene06543:CDS |
| TCGAGAATGCCTTACAGATC+AGG | 0.435054 | 3.2:+78678909 | MS.gene06543:CDS |
| TCCGCGAGTACTTATGCCTT+TGG | 0.441596 | 3.2:-78679244 | None:intergenic |
| GGAGTAGAAGACTTGAATAA+TGG | 0.442556 | 3.2:+78678279 | MS.gene06543:CDS |
| CCAGTTGGTACGAACCTTGA+AGG | 0.447258 | 3.2:+78678366 | MS.gene06543:CDS |
| CTTAAGGGACAAACATAACT+TGG | 0.447454 | 3.2:+78679490 | MS.gene06543:CDS |
| TCCTCGGAAAGATAGTTTGA+AGG | 0.454231 | 3.2:+78677795 | MS.gene06543:CDS |
| GAAGGTCATGGCTATGGTAT+TGG | 0.459591 | 3.2:-78679148 | None:intergenic |
| CACTAACCACCTCGCTTCTA+CGG | 0.460505 | 3.2:-78679736 | None:intergenic |
| CGTAGAAGCGAGGTGGTTAG+TGG | 0.462545 | 3.2:+78679737 | MS.gene06543:CDS |
| CAATGACCAATCAGCTATAG+AGG | 0.463430 | 3.2:+78678485 | MS.gene06543:CDS |
| TATATTTGAAGGAATATGTC+TGG | 0.464306 | 3.2:+78677081 | None:intergenic |
| GAGGTAAAGCCTCCACAAAA+AGG | 0.465708 | 3.2:+78680076 | MS.gene06543:CDS |
| ACGGATACAGATGAATCAAC+TGG | 0.473634 | 3.2:+78680007 | MS.gene06543:CDS |
| CAACAAATTCATCCCTTGAA+TGG | 0.475924 | 3.2:+78679893 | MS.gene06543:CDS |
| ATATGAGCTTCTTGTGGTTG+AGG | 0.478521 | 3.2:-78678652 | None:intergenic |
| TGGTATCCTCTATAGCTGAT+TGG | 0.481238 | 3.2:-78678491 | None:intergenic |
| ACACCAAGTAAAGTGATAAG+AGG | 0.482329 | 3.2:+78680127 | MS.gene06543:CDS |
| TTGCTAATAGCTCCTCGTAT+GGG | 0.484351 | 3.2:+78678739 | MS.gene06543:CDS |
| ATGACAAATCAGCTCTGATA+GGG | 0.484835 | 3.2:+78678091 | MS.gene06543:CDS |
| CTTTCATAGCCTGATCTGTA+AGG | 0.485476 | 3.2:-78678918 | None:intergenic |
| TAATCATCATAATATGAAAT+GGG | 0.485762 | 3.2:-78679815 | None:intergenic |
| TGTGGTGAGGAAATACTTAA+GGG | 0.486354 | 3.2:+78679475 | MS.gene06543:CDS |
| GTTATTTGGACCACCTTTGT+TGG | 0.486422 | 3.2:-78677968 | None:intergenic |
| CATCACTCACTGTGAGATTG+AGG | 0.490880 | 3.2:+78677990 | MS.gene06543:CDS |
| TTCTGCTGGTGTATCTTACA+AGG | 0.491674 | 3.2:+78679106 | MS.gene06543:CDS |
| GCTGAAGGAATGACCAGAAA+AGG | 0.496200 | 3.2:+78678708 | MS.gene06543:CDS |
| AGAAGAACTGGAAAGTGAGT+TGG | 0.496772 | 3.2:+78677909 | MS.gene06543:CDS |
| AGGTACTCTTCATAAACTCA+TGG | 0.498632 | 3.2:+78680096 | MS.gene06543:CDS |
| TTTGTTGTGTAAGAGAAAGA+AGG | 0.499054 | 3.2:-78679877 | None:intergenic |
| TAAGAGGGGCATCTTGTTGA+AGG | 0.499268 | 3.2:+78680143 | MS.gene06543:CDS |
| CGACATCACAAGCCAGTGGC+AGG | 0.506967 | 3.2:+78679518 | MS.gene06543:CDS |
| GAAAGTGGCAGGCCATCAAA+TGG | 0.507500 | 3.2:+78678936 | MS.gene06543:CDS |
| GTGTACAAGTGTGGTGGATG+TGG | 0.512363 | 3.2:+78677180 | MS.gene06543:CDS |
| GCATATTGATAGAAAACGTC+AGG | 0.513186 | 3.2:+78677768 | MS.gene06543:CDS |
| AAGGAATATGTCTGGTAAGG+TGG | 0.515393 | 3.2:+78677089 | None:intergenic |
| CTTGATCACTCTAGATGTAT+CGG | 0.516311 | 3.2:+78679194 | MS.gene06543:CDS |
| AAAGGAGCTCCTCCTGCCAC+TGG | 0.516948 | 3.2:-78679530 | None:intergenic |
| GCCATGACCTTCATGAGGGA+AGG | 0.519968 | 3.2:+78679159 | MS.gene06543:CDS |
| TCCTCTCCTTCTCCCTCTTG+TGG | 0.520199 | 3.2:-78678441 | None:intergenic |
| AATCTGCAGGTAGCTGAAGC+AGG | 0.520263 | 3.2:-78679577 | None:intergenic |
| CGAGTACTTATGCCTTTGGC+GGG | 0.521127 | 3.2:-78679240 | None:intergenic |
| GAGGCTCTGGAAGAAGTTGC+CGG | 0.525192 | 3.2:-78677146 | None:intergenic |
| ACCTGTATAAATCTTCATGT+TGG | 0.526192 | 3.2:-78679370 | None:intergenic |
| GTTGATTCATCTGTATCCGT+TGG | 0.526902 | 3.2:-78680004 | None:intergenic |
| TCTGGTCATTCCTTCAGCAA+CGG | 0.529453 | 3.2:-78678703 | None:intergenic |
| ATTACTGGAAACAATATAGC+AGG | 0.531297 | 3.2:+78678393 | MS.gene06543:CDS |
| GGATGTGGCACTGACCTTCA+AGG | 0.532393 | 3.2:+78677195 | MS.gene06543:CDS |
| TTTGGAAACTTGTCGCTAGA+GGG | 0.532723 | 3.2:+78678147 | MS.gene06543:CDS |
| CCTCATGAAGGTCATGGCTA+TGG | 0.534051 | 3.2:-78679154 | None:intergenic |
| TTTGCCTTGAATGTTGAGCT+AGG | 0.534758 | 3.2:-78679944 | None:intergenic |
| TAGTTAAATGTCCTAAATGC+CGG | 0.534878 | 3.2:+78677127 | MS.gene06543:CDS |
| TAATGCAATCGCGGCTCCAA+CGG | 0.535239 | 3.2:+78679988 | MS.gene06543:CDS |
| CCTATAGTATTCGATGAGAA+AGG | 0.535878 | 3.2:-78679692 | None:intergenic |
| TTGAAGGAATATGTCTGGTA+AGG | 0.536667 | 3.2:+78677086 | None:intergenic |
| CATTTATGACAAGTGACAAA+AGG | 0.537261 | 3.2:-78679548 | None:intergenic |
| CCTCCAGTATGTCTGAAACC+AGG | 0.539270 | 3.2:+78680035 | MS.gene06543:CDS |
| CAGTTGGTACGAACCTTGAA+GGG | 0.541921 | 3.2:+78678367 | MS.gene06543:CDS |
| CACCAAGTAAAGTGATAAGA+GGG | 0.542812 | 3.2:+78680128 | MS.gene06543:CDS |
| AAATGCAAGCAATGAGATTG+TGG | 0.546365 | 3.2:+78678551 | MS.gene06543:CDS |
| GATCAGGCTATGAAAGTGGC+AGG | 0.549263 | 3.2:+78678925 | MS.gene06543:CDS |
| CTCGCGTGAGGACACTGACC+AGG | 0.551465 | 3.2:+78678995 | MS.gene06543:CDS |
| GCGAGTACTTATGCCTTTGG+CGG | 0.552548 | 3.2:-78679241 | None:intergenic |
| TGCTAATAGCTCCTCGTATG+GGG | 0.553250 | 3.2:+78678740 | MS.gene06543:CDS |
| CTTGCTAATAGCTCCTCGTA+TGG | 0.554567 | 3.2:+78678738 | MS.gene06543:CDS |
| TGTATCGGAAGATGTAATCA+TGG | 0.555125 | 3.2:+78679209 | MS.gene06543:CDS |
| GAGAAAACCTTCCCTCATGA+AGG | 0.564438 | 3.2:-78679166 | None:intergenic |
| GCCACAAGAGGGAGAAGGAG+AGG | 0.568068 | 3.2:+78678440 | MS.gene06543:CDS |
| ATCAAATGGAGTGCATGATG+AGG | 0.568884 | 3.2:+78678950 | MS.gene06543:CDS |
| ATGGAATTGCGTCCCGCCAA+AGG | 0.570672 | 3.2:+78679228 | MS.gene06543:CDS |
| TAATGGCAATTTGCCACTAG+AGG | 0.571741 | 3.2:+78678296 | MS.gene06543:CDS |
| CTGCTGGTGTATCTTACAAG+GGG | 0.572567 | 3.2:+78679108 | MS.gene06543:CDS |
| TACAGATCAGGCTATGAAAG+TGG | 0.576466 | 3.2:+78678921 | MS.gene06543:CDS |
| TGCAGCTCCTGGAAAAGCAT+CGG | 0.577154 | 3.2:+78677723 | MS.gene06543:CDS |
| AAAGAGAAGCCAGTTACAGA+AGG | 0.579951 | 3.2:+78678216 | MS.gene06543:CDS |
| ACAAATGGAAGAGTTTCTGC+TGG | 0.583470 | 3.2:+78679092 | MS.gene06543:CDS |
| AGAGGATACCAAATCTGAAG+TGG | 0.584314 | 3.2:+78678503 | MS.gene06543:CDS |
| ACATATTTACCACCATTCAA+GGG | 0.586967 | 3.2:-78679905 | None:intergenic |
| ACCTTCCCTCATGAAGGTCA+TGG | 0.587046 | 3.2:-78679160 | None:intergenic |
| GGTATTGGTATGCAGAACTA+CGG | 0.587389 | 3.2:-78679133 | None:intergenic |
| ACTATGATCTCTTAATTCTG+TGG | 0.588099 | 3.2:-78678586 | None:intergenic |
| GGTACTCTTCATAAACTCAT+GGG | 0.590389 | 3.2:+78680097 | MS.gene06543:CDS |
| AAGTGGCCACAAGAGGGAGA+AGG | 0.591131 | 3.2:+78678435 | MS.gene06543:CDS |
| TTATAAAGGAGAAAATCTGC+AGG | 0.591353 | 3.2:-78679590 | None:intergenic |
| TAATGGAAAGTGGCCACAAG+AGG | 0.592409 | 3.2:+78678428 | MS.gene06543:CDS |
| GCCTTCAAACTATCTTTCCG+AGG | 0.593288 | 3.2:-78677796 | None:intergenic |
| GTCGCTAGAGGGAGCAGATG+CGG | 0.597570 | 3.2:+78678158 | MS.gene06543:CDS |
| AATGCTTACACCGTTGCTGA+AGG | 0.598914 | 3.2:+78678693 | MS.gene06543:CDS |
| TACCTAAATTGTCACTCAGA+AGG | 0.601587 | 3.2:+78677935 | MS.gene06543:CDS |
| GGAATGACCAGAAAAGGTAA+AGG | 0.602415 | 3.2:+78678714 | MS.gene06543:CDS |
| AGAAGGTGCAAATCCTGAAG+TGG | 0.603285 | 3.2:+78678233 | MS.gene06543:CDS |
| TCTGCTGGTGTATCTTACAA+GGG | 0.604895 | 3.2:+78679107 | MS.gene06543:CDS |
| CTACGGTGAAGCTCACGAGA+TGG | 0.605302 | 3.2:-78679719 | None:intergenic |
| TCAAATGGAGTGCATGATGA+GGG | 0.605561 | 3.2:+78678951 | MS.gene06543:CDS |
| TATATGAGTGAGGAAACAAA+TGG | 0.606561 | 3.2:+78679077 | MS.gene06543:CDS |
| CAAATTCATCCCTTGAATGG+TGG | 0.607888 | 3.2:+78679896 | MS.gene06543:CDS |
| GATCTGTAAGGCATTCTCGA+TGG | 0.608638 | 3.2:-78678906 | None:intergenic |
| GAAAACGTCAGGTTCTTCCT+CGG | 0.608765 | 3.2:+78677779 | MS.gene06543:CDS |
| CTAAGACACGGGAACAACAA+TGG | 0.613621 | 3.2:-78679322 | None:intergenic |
| CACAACATGGTAATTCACGT+TGG | 0.615905 | 3.2:+78678856 | MS.gene06543:CDS |
| ACAAGAAGCTCATATATCAC+AGG | 0.619189 | 3.2:+78678660 | MS.gene06543:CDS |
| CATCACAAGCCAGTGGCAGG+AGG | 0.621167 | 3.2:+78679521 | MS.gene06543:CDS |
| TCTTTCACACGACTCGCGTG+AGG | 0.622099 | 3.2:+78678983 | MS.gene06543:CDS |
| GAAATTGTCAGCAGAAAAGG+AGG | 0.624190 | 3.2:+78680057 | MS.gene06543:CDS |
| TGTGATATATGAGCTTCTTG+TGG | 0.626127 | 3.2:-78678658 | None:intergenic |
| CCAGAATTAAAATCCTCTAG+TGG | 0.627898 | 3.2:-78678309 | None:intergenic |
| GGCATAGGGCTACTGTGGTG+AGG | 0.627962 | 3.2:+78679462 | MS.gene06543:CDS |
| AGAAGAATCTGCTAAGACAC+GGG | 0.628845 | 3.2:-78679333 | None:intergenic |
| GTATGTCACAAGCTGAAATG+TGG | 0.632938 | 3.2:+78679617 | MS.gene06543:CDS |
| AATGGAAAGTGGCCACAAGA+GGG | 0.635120 | 3.2:+78678429 | MS.gene06543:CDS |
| CATAGAGTGTCCAACAAAGG+TGG | 0.635172 | 3.2:+78677958 | MS.gene06543:CDS |
| TCTGTTTCACTGAAGCATTG+TGG | 0.635814 | 3.2:-78679425 | None:intergenic |
| GAGAAGAATCTGCTAAGACA+CGG | 0.636353 | 3.2:-78679334 | None:intergenic |
| TCAGAGGCATAGGGCTACTG+TGG | 0.638205 | 3.2:+78679457 | MS.gene06543:CDS |
| TGACAAATCAGCTCTGATAG+GGG | 0.640991 | 3.2:+78678092 | MS.gene06543:CDS |
| GAAATGTGGTAAATGTTCAG+AGG | 0.642119 | 3.2:+78679631 | MS.gene06543:CDS |
| TCTGAAGTGGACACAACAGA+AGG | 0.642126 | 3.2:+78678516 | MS.gene06543:CDS |
| GATGGAAATGGTGAGTACAA+TGG | 0.642186 | 3.2:+78677853 | MS.gene06543:CDS |
| CAACTTCTTCCAGAGCCTCA+AGG | 0.642945 | 3.2:+78677150 | MS.gene06543:CDS |
| CCTGGTTTCAGACATACTGG+AGG | 0.645462 | 3.2:-78680035 | None:intergenic |
| CCATAGCCATGACCTTCATG+AGG | 0.648193 | 3.2:+78679154 | MS.gene06543:CDS |
| AGTGATAAATCAGCTCCAGT+TGG | 0.651091 | 3.2:+78678351 | MS.gene06543:CDS |
| AGGCATAGAGTGTCCAACAA+AGG | 0.653537 | 3.2:+78677955 | MS.gene06543:CDS |
| CAAGACTCGCTATATGAGTG+AGG | 0.657867 | 3.2:+78679067 | MS.gene06543:CDS |
| CATAGCCATGACCTTCATGA+GGG | 0.658552 | 3.2:+78679155 | MS.gene06543:CDS |
| TATTCTGTGTACAAGTGTGG+TGG | 0.659670 | 3.2:+78677174 | MS.gene06543:CDS |
| GGTAACAAGAATGATCTACA+TGG | 0.670834 | 3.2:-78679301 | None:intergenic |
| TGAGCTTCACCGTAGAAGCG+AGG | 0.674280 | 3.2:+78679727 | MS.gene06543:CDS |
| AGTTGGTACGAACCTTGAAG+GGG | 0.674859 | 3.2:+78678368 | MS.gene06543:CDS |
| GCCAAAGGCATAAGTACTCG+CGG | 0.688085 | 3.2:+78679243 | MS.gene06543:CDS |
| TGTTCCAAGATCCCCATACG+AGG | 0.688484 | 3.2:-78678751 | None:intergenic |
| CATACGAGGAGCTATTAGCA+AGG | 0.689093 | 3.2:-78678737 | None:intergenic |
| ACCAAGTAAAGTGATAAGAG+GGG | 0.689921 | 3.2:+78680129 | MS.gene06543:CDS |
| GGATATTCTGTGTACAAGTG+TGG | 0.693148 | 3.2:+78677171 | MS.gene06543:CDS |
| TAGTTGACATGAGATACTGA+TGG | 0.696878 | 3.2:-78679770 | None:intergenic |
| GGAAATGGTGAGTACAATGG+CGG | 0.699790 | 3.2:+78677856 | MS.gene06543:CDS |
| GTGTTGGACAATACACAACA+TGG | 0.710351 | 3.2:+78678843 | MS.gene06543:CDS |
| TAAGCGACATCACAAGCCAG+TGG | 0.712041 | 3.2:+78679514 | MS.gene06543:CDS |
| TTGTACACAGAATATCCTTG+AGG | 0.719345 | 3.2:-78677165 | None:intergenic |
| TCATGTTGGAAATGAACACG+TGG | 0.723896 | 3.2:-78679356 | None:intergenic |
| GCTTCACCGTAGAAGCGAGG+TGG | 0.726929 | 3.2:+78679730 | MS.gene06543:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCATCATAATATGAAA+TGG | - | chr3.2:78679819-78679838 | None:intergenic | 15.0% |
| !! | ATTTCATATTATGATGATTA+TGG | + | chr3.2:78679818-78679837 | MS.gene06543:CDS | 15.0% |
| !! | GAAATTTATATCAATCAAAT+AGG | - | chr3.2:78677446-78677465 | None:intergenic | 15.0% |
| !! | TAATCATCATAATATGAAAT+GGG | - | chr3.2:78679818-78679837 | None:intergenic | 15.0% |
| !! | TTTCATATTATGATGATTAT+GGG | + | chr3.2:78679819-78679838 | MS.gene06543:CDS | 15.0% |
| !!! | AAAAATTAAATAATGGAAAG+TGG | + | chr3.2:78678418-78678437 | MS.gene06543:CDS | 15.0% |
| !!! | TTAATATCATTATTTGAAAC+CGG | - | chr3.2:78677580-78677599 | None:intergenic | 15.0% |
| !! | ATTATTGGAAATGATTTAGA+AGG | + | chr3.2:78678258-78678277 | MS.gene06543:CDS | 20.0% |
| ! | AAAAATGAAACTGATGAGAA+TGG | + | chr3.2:78679019-78679038 | MS.gene06543:CDS | 25.0% |
| ! | AATTCTCATGTAAATGTTGT+TGG | - | chr3.2:78677518-78677537 | None:intergenic | 25.0% |
| ! | AGTGAATAAAAACAAAGTGT+TGG | + | chr3.2:78678827-78678846 | MS.gene06543:CDS | 25.0% |
| ! | ATTGAGGAGATAAGTAATAA+TGG | + | chr3.2:78678006-78678025 | MS.gene06543:CDS | 25.0% |
| ! | GATCATAGTTCAAAGTTTAA+TGG | + | chr3.2:78678600-78678619 | MS.gene06543:CDS | 25.0% |
| ! | GCAGGAGAAAAATTAAATAA+TGG | + | chr3.2:78678411-78678430 | MS.gene06543:CDS | 25.0% |
| ! | TATAACAGAATACATGACAT+TGG | - | chr3.2:78677408-78677427 | None:intergenic | 25.0% |
| ! | TGAGAATTTCTATGAATATC+CGG | + | chr3.2:78677558-78677577 | MS.gene06543:intron | 25.0% |
| !! | AATTAGATTTTTCACCTTGA+AGG | - | chr3.2:78677212-78677231 | None:intergenic | 25.0% |
| !! | ACATTTAACTATCCGAATTT+TGG | - | chr3.2:78677118-78677137 | None:intergenic | 25.0% |
| !! | AGTAAAATTGAAGAGTACAA+TGG | - | chr3.2:78677248-78677267 | None:intergenic | 25.0% |
| !! | GAAATCACTGAAACTAATTT+TGG | + | chr3.2:78678129-78678148 | MS.gene06543:CDS | 25.0% |
| !! | TGTGACATACTCTTTTATAA+AGG | - | chr3.2:78679607-78679626 | None:intergenic | 25.0% |
| !!! | AAGATATTTTAATGCAATCG+CGG | + | chr3.2:78679979-78679998 | MS.gene06543:CDS | 25.0% |
| AACATATTTACCACCATTCA+AGG | - | chr3.2:78679909-78679928 | None:intergenic | 30.0% | |
| AATCCTGAAGTGGAAATTAT+TGG | + | chr3.2:78678243-78678262 | MS.gene06543:CDS | 30.0% | |
| ACATATTTACCACCATTCAA+GGG | - | chr3.2:78679908-78679927 | None:intergenic | 30.0% | |
| ACCTGTATAAATCTTCATGT+TGG | - | chr3.2:78679373-78679392 | None:intergenic | 30.0% | |
| ACTATGATCTCTTAATTCTG+TGG | - | chr3.2:78678589-78678608 | None:intergenic | 30.0% | |
| ATTACTGGAAACAATATAGC+AGG | + | chr3.2:78678393-78678412 | MS.gene06543:CDS | 30.0% | |
| ATTTGTTCATCTGATGAAGA+TGG | + | chr3.2:78678063-78678082 | MS.gene06543:CDS | 30.0% | |
| CATTTATGACAAGTGACAAA+AGG | - | chr3.2:78679551-78679570 | None:intergenic | 30.0% | |
| CTCTTGTAATAGTTTGACAT+TGG | + | chr3.2:78677341-78677360 | MS.gene06543:intron | 30.0% | |
| TACAGCTAAGAAACAAAGTT+TGG | + | chr3.2:78677666-78677685 | MS.gene06543:intron | 30.0% | |
| TAGTTAAATGTCCTAAATGC+CGG | + | chr3.2:78677127-78677146 | MS.gene06543:CDS | 30.0% | |
| TATATGAGTGAGGAAACAAA+TGG | + | chr3.2:78679077-78679096 | MS.gene06543:CDS | 30.0% | |
| TCAAAGTTTAATGGTGTTCT+TGG | + | chr3.2:78678609-78678628 | MS.gene06543:CDS | 30.0% | |
| TCCAACATGAAGATTTATAC+AGG | + | chr3.2:78679369-78679388 | MS.gene06543:CDS | 30.0% | |
| TTATAAAGGAGAAAATCTGC+AGG | - | chr3.2:78679593-78679612 | None:intergenic | 30.0% | |
| TTCATTACAAAGACCAAAAG+AGG | + | chr3.2:78678035-78678054 | MS.gene06543:CDS | 30.0% | |
| TTTCCAATAATTTCCACTTC+AGG | - | chr3.2:78678249-78678268 | None:intergenic | 30.0% | |
| ! | AAACAGATTCTGATTTTCAG+AGG | + | chr3.2:78679441-78679460 | MS.gene06543:CDS | 30.0% |
| ! | CTCAAGTTTTCATTGAAGAA+TGG | + | chr3.2:78679656-78679675 | MS.gene06543:CDS | 30.0% |
| ! | GAACAAATTAAGTCCTCTTT+TGG | - | chr3.2:78678051-78678070 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTAAGAGAAAGA+AGG | - | chr3.2:78679880-78679899 | None:intergenic | 30.0% |
| !! | GAGTGTTATTTAGATGGAAA+TGG | + | chr3.2:78677841-78677860 | MS.gene06543:CDS | 30.0% |
| !! | TAATATGAAATGGGTTTTGC+AGG | - | chr3.2:78679809-78679828 | None:intergenic | 30.0% |
| !! | TCAAGAGAGTGTTATTTAGA+TGG | + | chr3.2:78677835-78677854 | MS.gene06543:CDS | 30.0% |
| !!! | ATGACATGGTTTTTTTCATG+TGG | - | chr3.2:78678795-78678814 | None:intergenic | 30.0% |
| !!! | TCATCAGTTTCATTTTTTCC+TGG | - | chr3.2:78679016-78679035 | None:intergenic | 30.0% |
| !!! | TTATGAAGAGTACCTTTTTG+TGG | - | chr3.2:78680091-78680110 | None:intergenic | 30.0% |
| AAATGCAAGCAATGAGATTG+TGG | + | chr3.2:78678551-78678570 | MS.gene06543:CDS | 35.0% | |
| ACAAGAAGCTCATATATCAC+AGG | + | chr3.2:78678660-78678679 | MS.gene06543:CDS | 35.0% | |
| ACACCAAGTAAAGTGATAAG+AGG | + | chr3.2:78680127-78680146 | MS.gene06543:CDS | 35.0% | |
| ACAGAATACATGACATTGGT+TGG | - | chr3.2:78677404-78677423 | None:intergenic | 35.0% | |
| ACCAAGTAAAGTGATAAGAG+GGG | + | chr3.2:78680129-78680148 | MS.gene06543:CDS | 35.0% | |
| AGGTACTCTTCATAAACTCA+TGG | + | chr3.2:78680096-78680115 | MS.gene06543:CDS | 35.0% | |
| CAACAAATTCATCCCTTGAA+TGG | + | chr3.2:78679893-78679912 | MS.gene06543:CDS | 35.0% | |
| CACCAAGTAAAGTGATAAGA+GGG | + | chr3.2:78680128-78680147 | MS.gene06543:CDS | 35.0% | |
| CCAGAATTAAAATCCTCTAG+TGG | - | chr3.2:78678312-78678331 | None:intergenic | 35.0% | |
| CCTATAGTATTCGATGAGAA+AGG | - | chr3.2:78679695-78679714 | None:intergenic | 35.0% | |
| CCTTTCTCATCGAATACTAT+AGG | + | chr3.2:78679692-78679711 | MS.gene06543:CDS | 35.0% | |
| CTTAAGGGACAAACATAACT+TGG | + | chr3.2:78679490-78679509 | MS.gene06543:CDS | 35.0% | |
| CTTGATCACTCTAGATGTAT+CGG | + | chr3.2:78679194-78679213 | MS.gene06543:CDS | 35.0% | |
| GAAATGTGGTAAATGTTCAG+AGG | + | chr3.2:78679631-78679650 | MS.gene06543:CDS | 35.0% | |
| GCATATTGATAGAAAACGTC+AGG | + | chr3.2:78677768-78677787 | MS.gene06543:CDS | 35.0% | |
| GGAGTAGAAGACTTGAATAA+TGG | + | chr3.2:78678279-78678298 | MS.gene06543:CDS | 35.0% | |
| GGTAACAAGAATGATCTACA+TGG | - | chr3.2:78679304-78679323 | None:intergenic | 35.0% | |
| GGTACTCTTCATAAACTCAT+GGG | + | chr3.2:78680097-78680116 | MS.gene06543:CDS | 35.0% | |
| GTAAATGTTGTTGGACAACA+TGG | - | chr3.2:78677509-78677528 | None:intergenic | 35.0% | |
| GTAAGGTGGTTACCAAAATT+CGG | + | chr3.2:78677103-78677122 | MS.gene06543:CDS | 35.0% | |
| GTTTCAGTGATTTCCATTTC+AGG | - | chr3.2:78678123-78678142 | None:intergenic | 35.0% | |
| TACCTAAATTGTCACTCAGA+AGG | + | chr3.2:78677935-78677954 | MS.gene06543:CDS | 35.0% | |
| TAGTTGACATGAGATACTGA+TGG | - | chr3.2:78679773-78679792 | None:intergenic | 35.0% | |
| TCACAGTGAGTGATGTTATT+TGG | - | chr3.2:78677985-78678004 | None:intergenic | 35.0% | |
| TCTTCATCTGTGAACTTGAA+TGG | - | chr3.2:78677892-78677911 | None:intergenic | 35.0% | |
| TGTATCGGAAGATGTAATCA+TGG | + | chr3.2:78679209-78679228 | MS.gene06543:CDS | 35.0% | |
| TGTGATATATGAGCTTCTTG+TGG | - | chr3.2:78678661-78678680 | None:intergenic | 35.0% | |
| TGTGGTGAGGAAATACTTAA+GGG | + | chr3.2:78679475-78679494 | MS.gene06543:CDS | 35.0% | |
| TTGTACACAGAATATCCTTG+AGG | - | chr3.2:78677168-78677187 | None:intergenic | 35.0% | |
| ! | ATAGCTGATTGGTCATTGTT+AGG | - | chr3.2:78678483-78678502 | None:intergenic | 35.0% |
| ! | ATGACAAATCAGCTCTGATA+GGG | + | chr3.2:78678091-78678110 | MS.gene06543:CDS | 35.0% |
| ! | TATGACAAATCAGCTCTGAT+AGG | + | chr3.2:78678090-78678109 | MS.gene06543:CDS | 35.0% |
| ! | TGGAGCTGATTTATCACTAT+TGG | - | chr3.2:78678349-78678368 | None:intergenic | 35.0% |
| ! | TGTAACTGGCTTCTCTTTAT+TGG | - | chr3.2:78678214-78678233 | None:intergenic | 35.0% |
| !! | ATTCTGATTTTCAGAGGCAT+AGG | + | chr3.2:78679447-78679466 | MS.gene06543:CDS | 35.0% |
| !! | TGCATTGATTTCTTGCATAC+TGG | - | chr3.2:78677707-78677726 | None:intergenic | 35.0% |
| !! | TTCTGATTTTCAGAGGCATA+GGG | + | chr3.2:78679448-78679467 | MS.gene06543:CDS | 35.0% |
| !!! | CCACTAGAGGATTTTAATTC+TGG | + | chr3.2:78678309-78678328 | MS.gene06543:CDS | 35.0% |
| AAAGAGAAGCCAGTTACAGA+AGG | + | chr3.2:78678216-78678235 | MS.gene06543:CDS | 40.0% | |
| AACCTTGAAGGGGAAATTAC+TGG | + | chr3.2:78678378-78678397 | MS.gene06543:CDS | 40.0% | |
| ACAAATGGAAGAGTTTCTGC+TGG | + | chr3.2:78679092-78679111 | MS.gene06543:CDS | 40.0% | |
| ACGGATACAGATGAATCAAC+TGG | + | chr3.2:78680007-78680026 | MS.gene06543:CDS | 40.0% | |
| AGAAGAACTGGAAAGTGAGT+TGG | + | chr3.2:78677909-78677928 | MS.gene06543:CDS | 40.0% | |
| AGAAGAATCTGCTAAGACAC+GGG | - | chr3.2:78679336-78679355 | None:intergenic | 40.0% | |
| AGAGGATACCAAATCTGAAG+TGG | + | chr3.2:78678503-78678522 | MS.gene06543:CDS | 40.0% | |
| AGTGATAAATCAGCTCCAGT+TGG | + | chr3.2:78678351-78678370 | MS.gene06543:CDS | 40.0% | |
| ATATGAGCTTCTTGTGGTTG+AGG | - | chr3.2:78678655-78678674 | None:intergenic | 40.0% | |
| ATCAAATGGAGTGCATGATG+AGG | + | chr3.2:78678950-78678969 | MS.gene06543:CDS | 40.0% | |
| CAAATTCATCCCTTGAATGG+TGG | + | chr3.2:78679896-78679915 | MS.gene06543:CDS | 40.0% | |
| CAATGACCAATCAGCTATAG+AGG | + | chr3.2:78678485-78678504 | MS.gene06543:CDS | 40.0% | |
| CACAACATGGTAATTCACGT+TGG | + | chr3.2:78678856-78678875 | MS.gene06543:CDS | 40.0% | |
| CAGGAAATTGTCAGCAGAAA+AGG | + | chr3.2:78680054-78680073 | MS.gene06543:CDS | 40.0% | |
| CAGTGATTCAGAACAGAAAG+AGG | - | chr3.2:78677621-78677640 | None:intergenic | 40.0% | |
| CTGTGGTGAGGAAATACTTA+AGG | + | chr3.2:78679474-78679493 | MS.gene06543:CDS | 40.0% | |
| CTTTCATAGCCTGATCTGTA+AGG | - | chr3.2:78678921-78678940 | None:intergenic | 40.0% | |
| GAAATTGTCAGCAGAAAAGG+AGG | + | chr3.2:78680057-78680076 | MS.gene06543:CDS | 40.0% | |
| GAGAAGAATCTGCTAAGACA+CGG | - | chr3.2:78679337-78679356 | None:intergenic | 40.0% | |
| GATGGAAATGGTGAGTACAA+TGG | + | chr3.2:78677853-78677872 | MS.gene06543:CDS | 40.0% | |
| GGAATGACCAGAAAAGGTAA+AGG | + | chr3.2:78678714-78678733 | MS.gene06543:CDS | 40.0% | |
| GGATATTCTGTGTACAAGTG+TGG | + | chr3.2:78677171-78677190 | MS.gene06543:CDS | 40.0% | |
| GTATGTCACAAGCTGAAATG+TGG | + | chr3.2:78679617-78679636 | MS.gene06543:CDS | 40.0% | |
| GTGTTGGACAATACACAACA+TGG | + | chr3.2:78678843-78678862 | MS.gene06543:CDS | 40.0% | |
| GTTATTTGGACCACCTTTGT+TGG | - | chr3.2:78677971-78677990 | None:intergenic | 40.0% | |
| GTTCACAGATGAAGAAGAAC+TGG | + | chr3.2:78677897-78677916 | MS.gene06543:CDS | 40.0% | |
| TAATGGCAATTTGCCACTAG+AGG | + | chr3.2:78678296-78678315 | MS.gene06543:CDS | 40.0% | |
| TACAGATCAGGCTATGAAAG+TGG | + | chr3.2:78678921-78678940 | MS.gene06543:CDS | 40.0% | |
| TATTCTGTGTACAAGTGTGG+TGG | + | chr3.2:78677174-78677193 | MS.gene06543:CDS | 40.0% | |
| TCAAATGGAGTGCATGATGA+GGG | + | chr3.2:78678951-78678970 | MS.gene06543:CDS | 40.0% | |
| TCATCATGCACTCCATTTGA+TGG | - | chr3.2:78678951-78678970 | None:intergenic | 40.0% | |
| TCATGTTGGAAATGAACACG+TGG | - | chr3.2:78679359-78679378 | None:intergenic | 40.0% | |
| TCCTCGGAAAGATAGTTTGA+AGG | + | chr3.2:78677795-78677814 | MS.gene06543:CDS | 40.0% | |
| TCTGCTGGTGTATCTTACAA+GGG | + | chr3.2:78679107-78679126 | MS.gene06543:CDS | 40.0% | |
| TGCCTTCTGAGTGACAATTT+AGG | - | chr3.2:78677940-78677959 | None:intergenic | 40.0% | |
| TGGTATCCTCTATAGCTGAT+TGG | - | chr3.2:78678494-78678513 | None:intergenic | 40.0% | |
| TGTTGTGTCCACTTCAGATT+TGG | - | chr3.2:78678514-78678533 | None:intergenic | 40.0% | |
| TTCCAGTAATTTCCCCTTCA+AGG | - | chr3.2:78678383-78678402 | None:intergenic | 40.0% | |
| TTCTGCTGGTGTATCTTACA+AGG | + | chr3.2:78679106-78679125 | MS.gene06543:CDS | 40.0% | |
| TTGAGCTAGGAGAGACATTT+GGG | - | chr3.2:78679934-78679953 | None:intergenic | 40.0% | |
| TTGCTAATAGCTCCTCGTAT+GGG | + | chr3.2:78678739-78678758 | MS.gene06543:CDS | 40.0% | |
| TTTCCTGGTTTCAGACATAC+TGG | - | chr3.2:78680041-78680060 | None:intergenic | 40.0% | |
| TTTGCCTTGAATGTTGAGCT+AGG | - | chr3.2:78679947-78679966 | None:intergenic | 40.0% | |
| TTTGGAAACTTGTCGCTAGA+GGG | + | chr3.2:78678147-78678166 | MS.gene06543:CDS | 40.0% | |
| ! | CTTGTTGCTTCAGCTGAATA+AGG | - | chr3.2:78679272-78679291 | None:intergenic | 40.0% |
| ! | CTTTTCTGCTGACAATTTCC+TGG | - | chr3.2:78680056-78680075 | None:intergenic | 40.0% |
| ! | GAAGAGCAACAATTTTGCAC+TGG | - | chr3.2:78679401-78679420 | None:intergenic | 40.0% |
| ! | GCAACAATTTTGCACTGGAT+AGG | - | chr3.2:78679396-78679415 | None:intergenic | 40.0% |
| ! | GTTGATTCATCTGTATCCGT+TGG | - | chr3.2:78680007-78680026 | None:intergenic | 40.0% |
| ! | TGACAAATCAGCTCTGATAG+GGG | + | chr3.2:78678092-78678111 | MS.gene06543:CDS | 40.0% |
| !! | GGTATTGGTATGCAGAACTA+CGG | - | chr3.2:78679136-78679155 | None:intergenic | 40.0% |
| !! | TCTGTTTCACTGAAGCATTG+TGG | - | chr3.2:78679428-78679447 | None:intergenic | 40.0% |
| !! | TTTTGGAAACTTGTCGCTAG+AGG | + | chr3.2:78678146-78678165 | MS.gene06543:CDS | 40.0% |
| !!! | GAGAATGGTTTTGAAGTTGC+AGG | + | chr3.2:78679034-78679053 | MS.gene06543:CDS | 40.0% |
| !!! | TGAAGAGTACCTTTTTGTGG+AGG | - | chr3.2:78680088-78680107 | None:intergenic | 40.0% |
| AATGCTTACACCGTTGCTGA+AGG | + | chr3.2:78678693-78678712 | MS.gene06543:CDS | 45.0% | |
| AATGGAAAGTGGCCACAAGA+GGG | + | chr3.2:78678429-78678448 | MS.gene06543:CDS | 45.0% | |
| ACAGAATATCCTTGAGGCTC+TGG | - | chr3.2:78677162-78677181 | None:intergenic | 45.0% | |
| CAAGAAATCAATGCAGCTCC+TGG | + | chr3.2:78677712-78677731 | MS.gene06543:CDS | 45.0% | |
| CAAGACTCGCTATATGAGTG+AGG | + | chr3.2:78679067-78679086 | MS.gene06543:CDS | 45.0% | |
| CATACGAGGAGCTATTAGCA+AGG | - | chr3.2:78678740-78678759 | None:intergenic | 45.0% | |
| CATAGCCATGACCTTCATGA+GGG | + | chr3.2:78679155-78679174 | MS.gene06543:CDS | 45.0% | |
| CATCACTCACTGTGAGATTG+AGG | + | chr3.2:78677990-78678009 | MS.gene06543:CDS | 45.0% | |
| CTAAGACACGGGAACAACAA+TGG | - | chr3.2:78679325-78679344 | None:intergenic | 45.0% | |
| CTCTCCTAGCTCAACATTCA+AGG | + | chr3.2:78679940-78679959 | MS.gene06543:CDS | 45.0% | |
| CTGCTGGTGTATCTTACAAG+GGG | + | chr3.2:78679108-78679127 | MS.gene06543:CDS | 45.0% | |
| CTGTGCTGTCTTTCATGACA+TGG | - | chr3.2:78678809-78678828 | None:intergenic | 45.0% | |
| CTTGCTAATAGCTCCTCGTA+TGG | + | chr3.2:78678738-78678757 | MS.gene06543:CDS | 45.0% | |
| GAAAACGTCAGGTTCTTCCT+CGG | + | chr3.2:78677779-78677798 | MS.gene06543:CDS | 45.0% | |
| GAAGGTCATGGCTATGGTAT+TGG | - | chr3.2:78679151-78679170 | None:intergenic | 45.0% | |
| GAGAAAACCTTCCCTCATGA+AGG | - | chr3.2:78679169-78679188 | None:intergenic | 45.0% | |
| GAGGTAAAGCCTCCACAAAA+AGG | + | chr3.2:78680076-78680095 | MS.gene06543:CDS | 45.0% | |
| GCCCCTCTTATCACTTTACT+TGG | - | chr3.2:78680133-78680152 | None:intergenic | 45.0% | |
| GCCTTCAAACTATCTTTCCG+AGG | - | chr3.2:78677799-78677818 | None:intergenic | 45.0% | |
| GCTGAAGGAATGACCAGAAA+AGG | + | chr3.2:78678708-78678727 | MS.gene06543:CDS | 45.0% | |
| GGAAATGGTGAGTACAATGG+CGG | + | chr3.2:78677856-78677875 | MS.gene06543:CDS | 45.0% | |
| GGATTTGCACCTTCTGTAAC+TGG | - | chr3.2:78678228-78678247 | None:intergenic | 45.0% | |
| GTTGAGCTAGGAGAGACATT+TGG | - | chr3.2:78679935-78679954 | None:intergenic | 45.0% | |
| TAATGGAAAGTGGCCACAAG+AGG | + | chr3.2:78678428-78678447 | MS.gene06543:CDS | 45.0% | |
| TCGAGAATGCCTTACAGATC+AGG | + | chr3.2:78678909-78678928 | MS.gene06543:CDS | 45.0% | |
| TCTGGTCATTCCTTCAGCAA+CGG | - | chr3.2:78678706-78678725 | None:intergenic | 45.0% | |
| TGCTAATAGCTCCTCGTATG+GGG | + | chr3.2:78678740-78678759 | MS.gene06543:CDS | 45.0% | |
| ! | ACAAGATCCGATGCTTTTCC+AGG | - | chr3.2:78677733-78677752 | None:intergenic | 45.0% |
| ! | AGAAGGTGCAAATCCTGAAG+TGG | + | chr3.2:78678233-78678252 | MS.gene06543:CDS | 45.0% |
| ! | AGCAAGGCCTTTACCTTTTC+TGG | - | chr3.2:78678724-78678743 | None:intergenic | 45.0% |
| ! | AGGCATAGAGTGTCCAACAA+AGG | + | chr3.2:78677955-78677974 | MS.gene06543:CDS | 45.0% |
| ! | AGTTGGTACGAACCTTGAAG+GGG | + | chr3.2:78678368-78678387 | MS.gene06543:CDS | 45.0% |
| ! | CAGTTGGTACGAACCTTGAA+GGG | + | chr3.2:78678367-78678386 | MS.gene06543:CDS | 45.0% |
| ! | CATAGAGTGTCCAACAAAGG+TGG | + | chr3.2:78677958-78677977 | MS.gene06543:CDS | 45.0% |
| ! | GATCTGTAAGGCATTCTCGA+TGG | - | chr3.2:78678909-78678928 | None:intergenic | 45.0% |
| ! | TCTGAAGTGGACACAACAGA+AGG | + | chr3.2:78678516-78678535 | MS.gene06543:CDS | 45.0% |
| ! | TGGGTTTTGCAGGTGAATAC+TGG | - | chr3.2:78679799-78679818 | None:intergenic | 45.0% |
| !!! | GCATCGGATCTTGTTTTTGC+AGG | + | chr3.2:78677739-78677758 | MS.gene06543:CDS | 45.0% |
| AATCTGCAGGTAGCTGAAGC+AGG | - | chr3.2:78679580-78679599 | None:intergenic | 50.0% | |
| ACCTTCCCTCATGAAGGTCA+TGG | - | chr3.2:78679163-78679182 | None:intergenic | 50.0% | |
| CAACTTCTTCCAGAGCCTCA+AGG | + | chr3.2:78677150-78677169 | MS.gene06543:CDS | 50.0% | |
| CACTAACCACCTCGCTTCTA+CGG | - | chr3.2:78679739-78679758 | None:intergenic | 50.0% | |
| CCATAGCCATGACCTTCATG+AGG | + | chr3.2:78679154-78679173 | MS.gene06543:CDS | 50.0% | |
| CCTCATGAAGGTCATGGCTA+TGG | - | chr3.2:78679157-78679176 | None:intergenic | 50.0% | |
| CCTGGTTTCAGACATACTGG+AGG | - | chr3.2:78680038-78680057 | None:intergenic | 50.0% | |
| CCTTCAAGGTTCGTACCAAC+TGG | - | chr3.2:78678369-78678388 | None:intergenic | 50.0% | |
| CGAGTACTTATGCCTTTGGC+GGG | - | chr3.2:78679243-78679262 | None:intergenic | 50.0% | |
| GAAAGTGGCAGGCCATCAAA+TGG | + | chr3.2:78678936-78678955 | MS.gene06543:CDS | 50.0% | |
| GATAGGGGACAGACCTGAAA+TGG | + | chr3.2:78678107-78678126 | MS.gene06543:CDS | 50.0% | |
| GATCAGGCTATGAAAGTGGC+AGG | + | chr3.2:78678925-78678944 | MS.gene06543:CDS | 50.0% | |
| GCGAGTACTTATGCCTTTGG+CGG | - | chr3.2:78679244-78679263 | None:intergenic | 50.0% | |
| GGAAGAAGTTGCCGGCATTT+AGG | - | chr3.2:78677141-78677160 | None:intergenic | 50.0% | |
| TAAGCGACATCACAAGCCAG+TGG | + | chr3.2:78679514-78679533 | MS.gene06543:CDS | 50.0% | |
| TAATGCAATCGCGGCTCCAA+CGG | + | chr3.2:78679988-78680007 | MS.gene06543:CDS | 50.0% | |
| TCCGCGAGTACTTATGCCTT+TGG | - | chr3.2:78679247-78679266 | None:intergenic | 50.0% | |
| TGTTCCAAGATCCCCATACG+AGG | - | chr3.2:78678754-78678773 | None:intergenic | 50.0% | |
| ! | CCAGTTGGTACGAACCTTGA+AGG | + | chr3.2:78678366-78678385 | MS.gene06543:CDS | 50.0% |
| ! | CCTCCAGTATGTCTGAAACC+AGG | + | chr3.2:78680035-78680054 | MS.gene06543:CDS | 50.0% |
| ! | GCCAAAGGCATAAGTACTCG+CGG | + | chr3.2:78679243-78679262 | MS.gene06543:CDS | 50.0% |
| ! | TGCAGCTCCTGGAAAAGCAT+CGG | + | chr3.2:78677723-78677742 | MS.gene06543:CDS | 50.0% |
| !! | GCAGATGCGGTGTTGATTTC+TGG | + | chr3.2:78678171-78678190 | MS.gene06543:CDS | 50.0% |
| !! | GTGTACAAGTGTGGTGGATG+TGG | + | chr3.2:78677180-78677199 | MS.gene06543:CDS | 50.0% |
| AAGTGGCCACAAGAGGGAGA+AGG | + | chr3.2:78678435-78678454 | MS.gene06543:CDS | 55.0% | |
| AGCTCCTCGTATGGGGATCT+TGG | + | chr3.2:78678747-78678766 | MS.gene06543:CDS | 55.0% | |
| ATGGAATTGCGTCCCGCCAA+AGG | + | chr3.2:78679228-78679247 | MS.gene06543:CDS | 55.0% | |
| CGTAGAAGCGAGGTGGTTAG+TGG | + | chr3.2:78679737-78679756 | MS.gene06543:CDS | 55.0% | |
| CTACGGTGAAGCTCACGAGA+TGG | - | chr3.2:78679722-78679741 | None:intergenic | 55.0% | |
| GCCATGACCTTCATGAGGGA+AGG | + | chr3.2:78679159-78679178 | MS.gene06543:CDS | 55.0% | |
| TCCTCTCCTTCTCCCTCTTG+TGG | - | chr3.2:78678444-78678463 | None:intergenic | 55.0% | |
| TCTTTCACACGACTCGCGTG+AGG | + | chr3.2:78678983-78679002 | MS.gene06543:CDS | 55.0% | |
| TGAGCTTCACCGTAGAAGCG+AGG | + | chr3.2:78679727-78679746 | MS.gene06543:CDS | 55.0% | |
| ! | TCAGAGGCATAGGGCTACTG+TGG | + | chr3.2:78679457-78679476 | MS.gene06543:CDS | 55.0% |
| !! | GAGGCTCTGGAAGAAGTTGC+CGG | - | chr3.2:78677149-78677168 | None:intergenic | 55.0% |
| !! | GGATGTGGCACTGACCTTCA+AGG | + | chr3.2:78677195-78677214 | MS.gene06543:CDS | 55.0% |
| AAAGGAGCTCCTCCTGCCAC+TGG | - | chr3.2:78679533-78679552 | None:intergenic | 60.0% | |
| CATCACAAGCCAGTGGCAGG+AGG | + | chr3.2:78679521-78679540 | MS.gene06543:CDS | 60.0% | |
| CGACATCACAAGCCAGTGGC+AGG | + | chr3.2:78679518-78679537 | MS.gene06543:CDS | 60.0% | |
| GCCACAAGAGGGAGAAGGAG+AGG | + | chr3.2:78678440-78678459 | MS.gene06543:CDS | 60.0% | |
| GCTTCACCGTAGAAGCGAGG+TGG | + | chr3.2:78679730-78679749 | MS.gene06543:CDS | 60.0% | |
| GGCATAGGGCTACTGTGGTG+AGG | + | chr3.2:78679462-78679481 | MS.gene06543:CDS | 60.0% | |
| GTCGCTAGAGGGAGCAGATG+CGG | + | chr3.2:78678158-78678177 | MS.gene06543:CDS | 60.0% | |
| CTCGCGTGAGGACACTGACC+AGG | + | chr3.2:78678995-78679014 | MS.gene06543:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78677096 | 78680162 | 78677096 | ID=MS.gene06543 |
| chr3.2 | mRNA | 78677096 | 78680162 | 78677096 | ID=MS.gene06543.t1;Parent=MS.gene06543 |
| chr3.2 | exon | 78677096 | 78677216 | 78677096 | ID=MS.gene06543.t1.exon1;Parent=MS.gene06543.t1 |
| chr3.2 | CDS | 78677096 | 78677216 | 78677096 | ID=cds.MS.gene06543.t1;Parent=MS.gene06543.t1 |
| chr3.2 | exon | 78677671 | 78680162 | 78677671 | ID=MS.gene06543.t1.exon2;Parent=MS.gene06543.t1 |
| chr3.2 | CDS | 78677671 | 78680162 | 78677671 | ID=cds.MS.gene06543.t1;Parent=MS.gene06543.t1 |
| Gene Sequence |
| Protein sequence |
