AlfalfaGEDB | MS.gene065436

M. sativa cultivar XinJiangDaYe / MS.gene065436

KEGG: K23538
GO: -
PFAM: PF04727.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065436.t1	XP_003624290.1	99.2	266	2	0	1	266	1	266	3.30E-148	534.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065436.t1	Q54YW1	31.2	215	121	4	64	260	361	566	2.6e-24	114.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065436.t1	A2Q1V0	99.2	266	2	0	1	266	1	266	2.4e-148	534.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050807	MS.gene065436	0.823225	1.55E-53	-1.69E-46
MS.gene051719	MS.gene065436	0.831003	2.14E-55	-1.69E-46
MS.gene051720	MS.gene065436	0.835812	1.35E-56	-1.69E-46
MS.gene052516	MS.gene065436	0.812196	4.79E-51	-1.69E-46
MS.gene052665	MS.gene065436	0.805553	1.26E-49	-1.69E-46
MS.gene053144	MS.gene065436	0.835985	1.22E-56	-1.69E-46
MS.gene053565	MS.gene065436	0.824944	6.13E-54	-1.69E-46
MS.gene054584	MS.gene065436	0.833767	4.41E-56	-1.69E-46
MS.gene055144	MS.gene065436	0.809723	1.64E-50	-1.69E-46
MS.gene055465	MS.gene065436	0.823511	1.33E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene024128	MS.gene065436	PPI
MS.gene033572	MS.gene065436	PPI
MS.gene065436	MS.gene55088	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065436.t1	MTR_7g081300	99.248	266	2	0	1	266	1	266	0.0	546
MS.gene065436.t1	MTR_7g081300	99.142	233	2	0	1	233	1	233	2.27e-175	482
MS.gene065436.t1	MTR_8g007175	79.699	266	50	2	1	266	1	262	4.63e-154	430
MS.gene065436.t1	MTR_8g007175	80.488	246	47	1	21	266	13	257	2.44e-145	407
MS.gene065436.t1	MTR_8g007175	80.591	237	43	1	1	237	1	234	6.86e-139	390
MS.gene065436.t1	MTR_8g007175	81.545	233	40	1	1	233	1	230	1.04e-137	387
MS.gene065436.t1	MTR_0258s0040	60.944	233	89	1	32	264	40	270	7.88e-103	300
MS.gene065436.t1	MTR_8g007175	78.919	185	36	1	1	185	1	182	3.44e-102	296
MS.gene065436.t1	MTR_0258s0040	60.684	234	89	2	32	264	1	232	1.54e-101	296
MS.gene065436.t1	MTR_0258s0040	60.684	234	89	2	32	264	40	271	4.39e-101	296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065436.t1	AT2G44770	81.955	266	48	0	1	266	1	266	2.89e-166	461
MS.gene065436.t1	AT3G60260	79.699	266	54	0	1	266	1	266	1.18e-164	457
MS.gene065436.t1	AT3G60260	79.699	266	54	0	1	266	1	266	1.18e-164	457
MS.gene065436.t1	AT3G60260	79.699	266	54	0	1	266	1	266	1.18e-164	457
MS.gene065436.t1	AT3G60260	78.151	238	52	0	29	266	7	244	1.03e-143	403
MS.gene065436.t1	AT1G67400	56.349	252	105	2	15	265	34	281	1.90e-103	302
MS.gene065436.t1	AT1G03620	57.563	238	97	2	28	264	29	263	3.30e-99	291
MS.gene065436.t1	AT1G03620	57.563	238	97	2	28	264	29	263	3.30e-99	291
MS.gene065436.t1	AT1G03620	57.563	238	97	2	28	264	29	263	3.30e-99	291
MS.gene065436.t1	AT1G03620	57.563	238	97	2	28	264	29	263	3.30e-99	291

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Find 61 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATAAAAGCTACCTGCA+AGG	0.580109	7.3:-26326682	None:intergenic
AACGCGTACCATTCATCTTC+CGG	0.493195	7.3:+26323175	MS.gene065436:CDS
AAGAGACTACCTGGTGCTCA+GGG	0.585963	7.3:-26324609	None:intergenic
AAGCCATTGAGTTCTTCTTC+AGG	0.450943	7.3:-26324857	None:intergenic
AATTGGAAAATGGATGATAG+AGG	0.555587	7.3:+26323103	None:intergenic
ACAGGATCAACGGCATGGAT+TGG	0.515977	7.3:+26324101	MS.gene065436:CDS
ACTTTCTTAAAATTCCTTGC+AGG	0.415890	7.3:+26326668	MS.gene065436:CDS
AGACATGGGATGGCAAGGGA+AGG	0.566951	7.3:+26324898	MS.gene065436:CDS
AGATCATACCGGAAAATTCC+TGG	0.390564	7.3:-26325068	None:intergenic
AGCAGTGGAAAGACATGGGA+TGG	0.573630	7.3:+26324888	MS.gene065436:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACAATTCAGGAAAACA+GGG	-	chr7.3:26325960-26325979	None:intergenic	30.0%
AATATAGACAAAATCACGAG+AGG	-	chr7.3:26323295-26323314	None:intergenic	30.0%
AATGCTTATAAAGTTACAGG+TGG	-	chr7.3:26326351-26326370	None:intergenic	30.0%
AATGTATTATGTGATGAAGG+TGG	+	chr7.3:26323959-26323978	MS.gene065436:intron	30.0%
ACTTTCTTAAAATTCCTTGC+AGG	+	chr7.3:26326668-26326687	MS.gene065436:CDS	30.0%
AGAAAATCATGGAAGGAATT+GGG	-	chr7.3:26325615-26325634	None:intergenic	30.0%
ATCTACCTAAAATCTGTTGA+TGG	-	chr7.3:26324926-26324945	None:intergenic	30.0%
ATGAAACAACAAAGACCATT+TGG	-	chr7.3:26325335-26325354	None:intergenic	30.0%
ATGATCTTAGGAATCCTTAA+GGG	+	chr7.3:26324814-26324833	MS.gene065436:intron	30.0%
ATGCTTATAAAGTTACAGGT+GGG	-	chr7.3:26326350-26326369	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	26323112	26327388	26323112	ID=MS.gene065436
chr7.3	mRNA	26323112	26327388	26323112	ID=MS.gene065436.t1;Parent=MS.gene065436
chr7.3	exon	26323112	26323196	26323112	ID=MS.gene065436.t1.exon1;Parent=MS.gene065436.t1
chr7.3	CDS	26323112	26323196	26323112	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26324090	26324199	26324090	ID=MS.gene065436.t1.exon2;Parent=MS.gene065436.t1
chr7.3	CDS	26324090	26324199	26324090	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26324553	26324621	26324553	ID=MS.gene065436.t1.exon3;Parent=MS.gene065436.t1
chr7.3	CDS	26324553	26324621	26324553	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26324824	26324939	26324824	ID=MS.gene065436.t1.exon4;Parent=MS.gene065436.t1
chr7.3	CDS	26324824	26324939	26324824	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26325027	26325081	26325027	ID=MS.gene065436.t1.exon5;Parent=MS.gene065436.t1
chr7.3	CDS	26325027	26325081	26325027	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26326070	26326190	26326070	ID=MS.gene065436.t1.exon6;Parent=MS.gene065436.t1
chr7.3	CDS	26326070	26326190	26326070	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26326642	26326689	26326642	ID=MS.gene065436.t1.exon7;Parent=MS.gene065436.t1
chr7.3	CDS	26326642	26326689	26326642	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26327039	26327133	26327039	ID=MS.gene065436.t1.exon8;Parent=MS.gene065436.t1
chr7.3	CDS	26327039	26327133	26327039	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1
chr7.3	exon	26327287	26327388	26327287	ID=MS.gene065436.t1.exon9;Parent=MS.gene065436.t1
chr7.3	CDS	26327287	26327388	26327287	ID=cds.MS.gene065436.t1;Parent=MS.gene065436.t1

Gene Sequence

>MS.gene065436

ATGGATGATAGAGGTGGTTCTTTCGTCGCTGTTCGTAGAATTTCTCAAGGTCTTGATCGTGGCAACGCGTACCATTCATCTTCCGGTATTCAATTTTTTCCTTCAAATTTCTCGTGATTTTTTCGATTTTCTCTCTCCTTCAACGTTTATTCCTTTCAACTTTTCAAAATTGCGTTTATTCCTCTCGTGATTTTGTCTATATTAAATTATAAAATTAAATTGATAAAGTTTTGATTGGATATAGTTGAGGTTGTTGAGATCTATATTGAGCTTAGTTTACTATGGAAAATGATGTTAATCTTAGAGCTAAAAGCTGTTTATTATGTTTAATGGAGTAATTGAGTACTTTATTATGTGATGAGGTTATCGTGTAGATCTAGCATTCATGTAATTTTTAATGGAGTATATCAGTACTTTATATGATGATGATGATGTTGATCCTTGTACAAAAATAGTGGAAGAATTGTAAATAAAGCAAGCTAGTGGTGAATCTAGTGGCAAGCATTATGATTGAAATAAAGCTAGCCACTATATTCTGTGGTCATAGGAGTATTTGGTTATCGTGTGTGAAAAGAATAAATGATTAATGACAGACACGACACTGACACACACACCATTAACAATTTGAGAAAATGAATTAATTGAAGTAATCACGTGTCGGCACCATATCTGACAAGGACACGTGTCAGTGCTGTATTTGACAAGGACATGTGTTGGACACCGGACACACCTTCCATTAGAAGTGTCGGTGCTATTTAGTAACCGAGAAGGAAATAGAGAGTTAACAATGAGTGTTAGCTCATTGTGGTTCATGTAAACTGAGTGCTTTAAGAAACTGAACTGAACAAATGTATTATGTGATGAAGGTGGTTTATTAGTAATAGAACACATGATTTTTCTCGATTAACTTACTAAAAATTTGTATTAAGAAAGTTGGAAAATCGGTCTTCATTTATGTGCAATTTTATTTTGTTACAGCTGAGTTTGTGACAGGATCAACGGCATGGATTGGCCGAGGTTTGTCTTGTGTATGTGCACAGAGAAGAGAGAGCGATGCTCGACTCTCTTTTGATTTAACTCCATACCAGGTAATATTTGTTGGCATCAAAATTACTGAAACAGCACTTCAACACTCTTTAAGGCATTCTTTTAATTTTTCTCTTTTCATCTTTGTACACGGAGTGCTCTGAATATATGTTACGTGATGATTCTCACTAAATAATAACAAATGTTTTTCAATTGTATTTCGGGCTATTCATACCGTGAACCGAATGTTCAATTGCTTTCATCACATGACACCAATGTTTCACATGGTTGGGTTTAATGGTTGCCTTTTTATCTTTGTTAATCTTATTTGCCTTGGGATCAAAATAATTTGTCACTCCCTACTCTTTTTTAATATTGCACGGTAAATTCACAATGCTGAATTTTCCATTTTCAGGAAGAATGCTTGCAGAGGCTTCAGAGTCGTATAGATGTTCCATATGATAGTTCTATCCCTGAGCACCAGGTAGTCTCTTCTATTAAAAATTTGAAGTCTAAGTGATATCGATTGTGATGTGAGTATGTGACAATAACTATGAAGTCCATCAAACACTTCAAGCCATGTACATATAGCTTTTCATGCGACTTACAACTTTTTACCACACGTGCAAACGTATATATCTTAAGAATGTAACGTTTACATTTGTTTTTATGCATGATGATCTTAGGAATCCTTAAGGGCTTTATGGAATGCTGCATTTCCTGAAGAAGAACTCAATGGCTTGATTTCAGAGCAGTGGAAAGACATGGGATGGCAAGGGAAGGATCCATCAACAGATTTTAGGTAGATAATATTCTGGTCGATGTCATCTCTTGTCCTCATTCTAATTTATTTTCACTAATGATTTCTATTTATGCATATCATTGGCAGGGGTGGTGGTTACATATCATTGGAGAATTTGCTGTTTTTTGCCAGGAATTTTCCGGTATGATCTGTTTTATTTTTGTTCCATCTTTTCTGTGTTGTAATCAATATTTTGGAGCCTTACTTTTTAGAGTTGTATGACTAAGCCTCATTTGAGTGCCTAGAAAGGTTAACAAAGTAACCACATTAGTATATTTCATCCAAAAGAAAGGGAAATTTTATTTCTTAAAGTTAAACAGCCTGGGTAGGTATACATTTTCATGTTTAATATATTATAGGTTTGGAATCAATGGATTGTCATCCATTTCTTCCCAAATGGTCTTTGTTGTTTCATGCATGCTTAATTAGATGGTTGATGCAGGAACAACTAATTAGCTGAATTCCTTGCTGAATAAAATTATTGCTTTCGGGTTTTAGACTTCATCCATGATAGAAAAATTTGGGCCAGATTGATATGTTTTATTGGTTTATATTTGAGACAGGGGATTTTGAAATTGATTGGTCTTGTTTTCTTTCGCAATAGCTGCTCTGAAATTACACCAGCTCCATGACGTGAAATAAAAGTACACAAATTTGTAGTTAAAGTTTCTCCCCAATTCCTTCCATGATTTTCTGTTGAAAACCCAAACTTGTCTTAGCATTGTGGACTTAATGCATATTGTGAATTGTGATAACATTATTTAAATGCTGAGATTCCTCAGCAGGTAATTTCCAAAAATATGGTGTATCCTCTTTGTTCGACTCTTATCCCGAGCTTCCTTGCATATTTTCAGTTTTTTGGGGTTGAAATAGGACTGCATGTTGTGTTTGTTATGAATGGTTGTCTATTCAATTTGGGGATAGTTATGTTTCAGACATATGGCTGTGATCTTTCAGTTTTTTCTAGTTACATTTTTGCATTTTTTTTTAAAGGAAATTTTTGCATTTTTGTTCGAACCCTGTTTTCCTGAATTGTCTTTATTAATCTAATTTTGGTTTAAAACCTCAAGAACTGTCCGTTCAAACCTTAAATCTATTTTGACTTTGCTGTTCATATGTCTTTATTGTAGAAATCTTTTCAAGATCTTTTGCGGAAGCAGGAAGGAGTTCGTTCAGTGTGGGAGTACCCATTTGCGGTTGCTGGTGTTAACATTACATTCATGCTTATTCAAATGCTAGATCTTGAAGCAGGTTGATCAGTTTCTCCTTTTATTATAATTTTTACTCTCAGCATATATCATGTCTAAAAGGATACATAGGGGAGGCATATATATGTACGGGAATATTTGTTTACTTTATTTGAAAGACCAGAACGTGTTGGTTCTAAACCAATCAAATGACATAAGCCCCACCTGTAACTTTATAAGCATTTATGTTAATTCTTCTGTATTATAAAACTTATTATTAGTTTTTTCCTCGCAAATATTACCAGCTATTTGTGTTTTTAAATAAATTTTGATTTCTCTTGGTTTATCTAACAGGATCCGTCCCAAATTTGACTTGTCAACAACCTTACAATATTTTTTTTTCTTATGCTTTCTGATGTGACATATATCGTGAATTCATAATAGATGCCTTCCCCAAGTAATGAATTGAATTTGATTATGATGTGATCTGTTACTAATGTTGTTTTCCTTGACAGTTAAGCCACGGACACTGGTGGGAGCAACTTTCTTAAAATTCCTTGCAGGTAGCTTTTATTGTTCATTGTTAATTATCGATTTCACTCATTTTTTCCTACAATTAGGAAGGGAAACAGGAAGTTTGGAACTTAACAAAATGGGAAATGCTAAATGTTACAAAAAGTACTCCATAAAGTTGTTGTGATTTTATGAAGGCTTTTTGTAAGGAGCATTCTTTATCACCTCTTTCATCTTTTTTCGCTTACTGTTTTCTGATCTCATTTGATTGGTGCTGCATCATTTGTAATTGAATTTAAGAAATATACTTGTGTTTACAAGAAACAAGAAATAGTGATAGTATTCACTATAGATAAACTTTGTTTCTAGTGACTAAATTCATTTATGTATGTCTGACAGAAAATGAGTCGGCCTTTGATCTTCTCTATTGCATAACATTCAAGCTGATGGACAATCAATGGCTTTCCATGCACGCGTCATACATGGATTTTAATGTATGTACTCTTTGTCCTGAGTTTATTTTGTAGATAAAGGGAAATATTATGCACGAGCAATTTTAATTGAAGTGTAGTGTAAAAGTTTTTGAAGATTGTTGGTGATGATTATAGTTGCTTATATGTATAAATGTATTACTTATGTTGTTACAGACAGTGATGAAATCTACACGCCGTCAGCTGGAGAAAGAACTTCTCCTTGAAGACCTTACACAACTAGAAGATGTACCCTCATACAAACTTCTCACACGATAG

Protein sequence

>MS.gene065436.t1

MDDRGGSFVAVRRISQGLDRGNAYHSSSAEFVTGSTAWIGRGLSCVCAQRRESDARLSFDLTPYQEECLQRLQSRIDVPYDSSIPEHQESLRALWNAAFPEEELNGLISEQWKDMGWQGKDPSTDFRGGGYISLENLLFFARNFPKSFQDLLRKQEGVRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENESAFDLLYCITFKLMDNQWLSMHASYMDFNTVMKSTRRQLEKELLLEDLTQLEDVPSYKLLTR