Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060603.t1 | RHN74953.1 | 95.1 | 568 | 18 | 2 | 1 | 558 | 1 | 568 | 3.90E-308 | 1066.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060603.t1 | Q9FZ49 | 69.4 | 571 | 161 | 4 | 1 | 558 | 1 | 570 | 4.3e-231 | 802.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060603.t1 | A0A396JF94 | 95.1 | 568 | 18 | 2 | 1 | 558 | 1 | 568 | 2.8e-308 | 1066.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene060603 | 0.803667 | 3.13E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene060603 | 0.815985 | 6.98E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene060603 | 0.819303 | 1.25E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene060603 | 0.827044 | 1.94E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene060603 | 0.802112 | 6.55E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene060603 | 0.849771 | 2.61E-60 | -1.69E-46 |
| MS.gene053581 | MS.gene060603 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene060603 | 0.855466 | 6.19E-62 | -1.69E-46 |
| MS.gene055144 | MS.gene060603 | 0.807814 | 4.21E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene060603 | 0.823328 | 1.47E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene060603 | 0.816659 | 4.94E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene060603 | 0.806311 | 8.75E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene060603 | 0.807058 | 6.08E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene060603 | -0.819367 | 1.21E-52 | -1.69E-46 |
| MS.gene055890 | MS.gene060603 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene060603 | -0.805242 | 1.47E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene060603 | 0.83943 | 1.59E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene060603 | 0.810291 | 1.24E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene060603 | 0.814258 | 1.69E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene060603 | 0.814965 | 1.18E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene061564 | 0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene062042 | 0.813055 | 3.11E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene062043 | 0.851209 | 1.03E-60 | -1.69E-46 |
| MS.gene060603 | MS.gene06258 | 0.826953 | 2.04E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene062743 | 0.807127 | 5.88E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene065436 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene068924 | 0.820006 | 8.62E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene068925 | 0.852435 | 4.63E-61 | -1.69E-46 |
| MS.gene060603 | MS.gene070339 | 0.803475 | 3.42E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene072116 | 0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene060603 | MS.gene073083 | 0.839355 | 1.67E-57 | -1.69E-46 |
| MS.gene060603 | MS.gene07359 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene08581 | 0.803902 | 2.79E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene09575 | 0.823819 | 1.13E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene20903 | 0.811654 | 6.28E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene23988 | 0.804381 | 2.22E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene25435 | 0.827985 | 1.16E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene25436 | 0.822619 | 2.15E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene25643 | 0.814523 | 1.48E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene25981 | -0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene26380 | 0.843119 | 1.70E-58 | -1.69E-46 |
| MS.gene060603 | MS.gene26659 | 0.828158 | 1.05E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene27342 | 0.820849 | 5.52E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene27421 | 0.806071 | 9.83E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene28387 | 0.808667 | 2.77E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene28611 | 0.826162 | 3.16E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene29807 | 0.817045 | 4.04E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene30946 | 0.801507 | 8.72E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene31347 | 0.803051 | 4.19E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene31433 | 0.833891 | 4.11E-56 | -1.69E-46 |
| MS.gene060603 | MS.gene31650 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene34286 | 0.851807 | 6.98E-61 | -1.69E-46 |
| MS.gene060603 | MS.gene35375 | 0.807373 | 5.22E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene35575 | 0.812331 | 4.47E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene36285 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene36334 | 0.84195 | 3.48E-58 | -1.69E-46 |
| MS.gene060603 | MS.gene36370 | 0.816328 | 5.85E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene38303 | 0.857041 | 2.14E-62 | -1.69E-46 |
| MS.gene060603 | MS.gene38561 | 0.811265 | 7.63E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene41651 | 0.827885 | 1.22E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene42310 | 0.812186 | 4.81E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene42534 | 0.807931 | 3.97E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene43075 | 0.838539 | 2.71E-57 | -1.69E-46 |
| MS.gene060603 | MS.gene44844 | 0.800142 | 1.66E-48 | -1.69E-46 |
| MS.gene060603 | MS.gene45425 | 0.801242 | 9.88E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene47689 | 0.805923 | 1.06E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene49714 | 0.82958 | 4.75E-55 | -1.69E-46 |
| MS.gene060603 | MS.gene49883 | 0.802756 | 4.82E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene50564 | 0.811522 | 6.71E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene55719 | 0.833521 | 5.09E-56 | -1.69E-46 |
| MS.gene060603 | MS.gene57576 | 0.80265 | 5.07E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene59241 | 0.80823 | 3.43E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene59242 | 0.818392 | 2.01E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene59294 | 0.802424 | 5.65E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene59614 | 0.809868 | 1.53E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene61226 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene62423 | 0.806187 | 9.29E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene62491 | 0.806066 | 9.85E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene62916 | 0.833114 | 6.42E-56 | -1.69E-46 |
| MS.gene060603 | MS.gene63032 | 0.813375 | 2.64E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene65276 | 0.809776 | 1.60E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene66076 | 0.840116 | 1.06E-57 | -1.69E-46 |
| MS.gene060603 | MS.gene68106 | 0.821402 | 4.12E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene68418 | 0.82286 | 1.89E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene68663 | 0.852652 | 4.01E-61 | -1.69E-46 |
| MS.gene060603 | MS.gene69459 | 0.81821 | 2.21E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene73327 | 0.813379 | 2.64E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene76034 | 0.815056 | 1.12E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene76314 | 0.802799 | 4.73E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene78189 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene83055 | 0.811045 | 8.52E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene83996 | 0.817466 | 3.25E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene84426 | 0.833105 | 6.46E-56 | -1.69E-46 |
| MS.gene060603 | MS.gene84847 | 0.803906 | 2.79E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene87773 | 0.803154 | 3.99E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene89100 | 0.800702 | 1.27E-48 | -1.69E-46 |
| MS.gene060603 | MS.gene89248 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene060603 | MS.gene89974 | 0.80043 | 1.45E-48 | -1.69E-46 |
| MS.gene060603 | MS.gene90610 | 0.816381 | 5.69E-52 | -1.69E-46 |
| MS.gene060603 | MS.gene90646 | 0.838461 | 2.84E-57 | -1.69E-46 |
| MS.gene060603 | MS.gene90880 | 0.809319 | 2.01E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene95698 | 0.826294 | 2.94E-54 | -1.69E-46 |
| MS.gene060603 | MS.gene97490 | 0.801941 | 7.10E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene97761 | 0.806092 | 9.73E-50 | -1.69E-46 |
| MS.gene060603 | MS.gene98394 | 0.805337 | 1.40E-49 | -1.69E-46 |
| MS.gene060603 | MS.gene98395 | 0.866411 | 2.91E-65 | -1.69E-46 |
| MS.gene060603 | MS.gene99595 | 0.8041 | 2.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060603 | MS.gene014312 | PPI |
| MS.gene060603 | MS.gene014310 | PPI |
| MS.gene060603 | MS.gene056676 | PPI |
| MS.gene060603 | MS.gene069988 | PPI |
| MS.gene060603 | MS.gene003786 | PPI |
| MS.gene060603 | MS.gene45709 | PPI |
| MS.gene060603 | MS.gene50052 | PPI |
| MS.gene060603 | MS.gene064868 | PPI |
| MS.gene060603 | MS.gene66827 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060603.t1 | MTR_2g076680 | 94.894 | 568 | 19 | 2 | 1 | 558 | 1 | 568 | 0.0 | 1088 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060603.t1 | AT1G16900 | 69.527 | 571 | 160 | 4 | 1 | 558 | 1 | 570 | 0.0 | 780 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTGCTGTTTCTGCTAT+TGG | 0.198710 | 2.2:-17343505 | MS.gene060603:CDS |
| AAATTCAAACAGGCATTTAT+TGG | 0.223315 | 2.2:-17343415 | MS.gene060603:CDS |
| TGTTCTTGCTATGCTGTTCT+TGG | 0.229117 | 2.2:-17342881 | MS.gene060603:CDS |
| TATGCTGTGAGATTCTTTCT+TGG | 0.247470 | 2.2:-17343944 | MS.gene060603:CDS |
| ACTATAACTATTATGGAAAA+TGG | 0.250286 | 2.2:-17343026 | MS.gene060603:CDS |
| CGAACTTGTCCCACAAAATC+TGG | 0.277414 | 2.2:+17340438 | None:intergenic |
| AACCACCGGCCTCAGAAATT+TGG | 0.286042 | 2.2:+17341602 | None:intergenic |
| ATTACTGACTATAACTATTA+TGG | 0.288093 | 2.2:-17343033 | MS.gene060603:CDS |
| TGATATCTCCTTTATACATT+TGG | 0.294318 | 2.2:-17342810 | MS.gene060603:CDS |
| GTATGCAATCTCTCTTTCTT+CGG | 0.305297 | 2.2:-17343557 | MS.gene060603:CDS |
| CCACTATTTCATGAAATAAA+AGG | 0.307405 | 2.2:+17344100 | None:intergenic |
| TTCATCTTTACCGTCCGATT+TGG | 0.317857 | 2.2:+17346168 | None:intergenic |
| GTAAAGATGAAGGGTTAAAA+TGG | 0.322168 | 2.2:-17346156 | MS.gene060603:CDS |
| AATTGCTGCATTGCCATATC+TGG | 0.323338 | 2.2:-17338382 | MS.gene060603:CDS |
| CGAGCTATGATCGGGGATAT+TGG | 0.327969 | 2.2:-17344887 | MS.gene060603:CDS |
| CGATGGATTGATGATGGTTT+CGG | 0.330104 | 2.2:-17340417 | MS.gene060603:CDS |
| ATGTTCTTGTTGTTAAAGTA+TGG | 0.342295 | 2.2:+17340339 | None:intergenic |
| ATCTCCTTTATACATTTGGC+TGG | 0.346279 | 2.2:-17342806 | MS.gene060603:CDS |
| TATGCAATCTCTCTTTCTTC+GGG | 0.348066 | 2.2:-17343556 | MS.gene060603:CDS |
| TCTGCTATTGGTGTGATACT+TGG | 0.358995 | 2.2:-17343493 | MS.gene060603:CDS |
| CGACCAGCTTTGTGGGTGTT+TGG | 0.360996 | 2.2:-17344075 | MS.gene060603:CDS |
| GAGCTATGATCGGGGATATT+GGG | 0.361820 | 2.2:-17344886 | MS.gene060603:CDS |
| CACCTAGGGTAGAATTAAAC+TGG | 0.374410 | 2.2:+17340379 | None:intergenic |
| GTAGCTATTTCAAGAAAGTA+TGG | 0.376006 | 2.2:-17343887 | MS.gene060603:CDS |
| AAAATCTTGTAAATCTCAAT+AGG | 0.384616 | 2.2:+17341516 | None:intergenic |
| CCGGTTAAATAGAATCATTT+CGG | 0.385136 | 2.2:+17338261 | None:intergenic |
| CAGGTTCTGTACTTTGTGTT+GGG | 0.400534 | 2.2:-17340497 | MS.gene060603:CDS |
| ATACAAATAAGTGGATATAC+TGG | 0.401368 | 2.2:+17341806 | None:intergenic |
| GCATATTTCTTCTTAGCAAT+AGG | 0.403396 | 2.2:+17342850 | None:intergenic |
| AAACCCAGCCAAATGTATAA+AGG | 0.411637 | 2.2:+17342802 | None:intergenic |
| TGAGAGCGTCTCCGTCTTGT+TGG | 0.411971 | 2.2:+17346247 | None:intergenic |
| TGGCTGGCCATTCTCAATCC+TGG | 0.413538 | 2.2:-17343473 | MS.gene060603:CDS |
| TTTATATATAAAATTCAAAC+AGG | 0.414170 | 2.2:-17343425 | MS.gene060603:CDS |
| AGCTTTCACCAGCTTTGTAT+AGG | 0.420983 | 2.2:-17338353 | MS.gene060603:CDS |
| GCAGGTTCTGTACTTTGTGT+TGG | 0.422829 | 2.2:-17340498 | MS.gene060603:intron |
| GTTCTTGCTATGCTGTTCTT+GGG | 0.423743 | 2.2:-17342880 | MS.gene060603:CDS |
| CAAGTTCGATGGATTGATGA+TGG | 0.437641 | 2.2:-17340423 | MS.gene060603:CDS |
| TATGTCTTTGCAGCCACATA+AGG | 0.447244 | 2.2:-17342779 | MS.gene060603:CDS |
| GCAGTTCACAGTTTGCTCTT+CGG | 0.447513 | 2.2:-17344134 | MS.gene060603:intron |
| TACTTTGTGTTGGGAGGGAA+TGG | 0.449523 | 2.2:-17340488 | MS.gene060603:CDS |
| CTCTCAGCCGTCGGATCCAC+CGG | 0.449738 | 2.2:-17346230 | MS.gene060603:CDS |
| TTCTGTACTTTGTGTTGGGA+GGG | 0.454869 | 2.2:-17340493 | MS.gene060603:CDS |
| GAAAGCTCCCTATCCAGATA+TGG | 0.463511 | 2.2:+17338369 | None:intergenic |
| TAGTGGCTCGACCAGCTTTG+TGG | 0.464263 | 2.2:-17344083 | MS.gene060603:CDS |
| GGCGGTGAAAGTCATCTGTA+TGG | 0.465884 | 2.2:-17342961 | MS.gene060603:CDS |
| ATAAGTCACTTCCACGGGTC+AGG | 0.467445 | 2.2:+17338496 | None:intergenic |
| AGAAAGAGAGATTGCATACA+TGG | 0.468345 | 2.2:+17343561 | None:intergenic |
| TTCCAGTTTAATTCTACCCT+AGG | 0.473875 | 2.2:-17340381 | MS.gene060603:CDS |
| GCTCGACAAAGCGTCCAAAT+CGG | 0.474342 | 2.2:-17346182 | MS.gene060603:CDS |
| TATAGGTTCGAGCTATGATC+GGG | 0.475376 | 2.2:-17344895 | MS.gene060603:intron |
| TATAAAGAATAAAGTGTCAC+TGG | 0.478099 | 2.2:+17343442 | None:intergenic |
| TGCAGCCACATAAGGAAGAA+AGG | 0.479785 | 2.2:-17342771 | MS.gene060603:intron |
| GATATCACAATAAGTAGGTC+TGG | 0.481533 | 2.2:+17342826 | None:intergenic |
| GAAGCAGCAATACAAATAAG+TGG | 0.483581 | 2.2:+17341797 | None:intergenic |
| CTTCTAATATACAATGTAGC+TGG | 0.484114 | 2.2:-17342985 | MS.gene060603:CDS |
| TAAAGATGAAGGGTTAAAAT+GGG | 0.485417 | 2.2:-17346155 | MS.gene060603:CDS |
| CTGCATTGCCATATCTGGAT+AGG | 0.485934 | 2.2:-17338377 | MS.gene060603:CDS |
| TTCAAACAGGCATTTATTGG+TGG | 0.486955 | 2.2:-17343412 | MS.gene060603:CDS |
| TGTAACCTTTCTTCCTTATG+TGG | 0.487573 | 2.2:+17342766 | None:intergenic |
| AGTGGCTCGACCAGCTTTGT+GGG | 0.488898 | 2.2:-17344082 | MS.gene060603:CDS |
| GCATACATGGAAAACGAACT+TGG | 0.489829 | 2.2:+17343574 | None:intergenic |
| GTGCTGCAGCAGTCCCACCT+AGG | 0.491314 | 2.2:+17340364 | None:intergenic |
| AAGTGCAGGCATCGATATCA+TGG | 0.494904 | 2.2:+17338550 | None:intergenic |
| TACTTGTCACGGAAAAGATC+AGG | 0.499304 | 2.2:+17341755 | None:intergenic |
| AAATCGGACGGTAAAGATGA+AGG | 0.501810 | 2.2:-17346166 | MS.gene060603:CDS |
| CTATTGGTGTGATACTTGGC+TGG | 0.503293 | 2.2:-17343489 | MS.gene060603:CDS |
| AGTTTAATTCTACCCTAGGT+GGG | 0.506912 | 2.2:-17340377 | MS.gene060603:CDS |
| GTTCTGTACTTTGTGTTGGG+AGG | 0.516691 | 2.2:-17340494 | MS.gene060603:CDS |
| TGACACTTCTTTAATAGTGA+AGG | 0.517173 | 2.2:-17341723 | MS.gene060603:intron |
| TCACTTCCACGGGTCAGGTA+AGG | 0.519854 | 2.2:+17338501 | None:intergenic |
| CAGCTCGACGAGGAAAGTGC+AGG | 0.528901 | 2.2:+17338536 | None:intergenic |
| GTGTCACTGGAAGAAAAGCC+AGG | 0.529892 | 2.2:+17343455 | None:intergenic |
| TGTAAATCTCAATAGGAGCT+TGG | 0.532733 | 2.2:+17341523 | None:intergenic |
| TCTCCTTTATACATTTGGCT+GGG | 0.533277 | 2.2:-17342805 | MS.gene060603:CDS |
| CACCACGACGATGTAGCAAA+TGG | 0.535604 | 2.2:-17341489 | MS.gene060603:intron |
| CAGTTTAATTCTACCCTAGG+TGG | 0.541435 | 2.2:-17340378 | MS.gene060603:CDS |
| TGCATTGCCATATCTGGATA+GGG | 0.545962 | 2.2:-17338376 | MS.gene060603:CDS |
| TGCTGCAGCAGTCCCACCTA+GGG | 0.546607 | 2.2:+17340365 | None:intergenic |
| AAGGAGATATCACAATAAGT+AGG | 0.549912 | 2.2:+17342821 | None:intergenic |
| GATGAAGATGATCGCGCCGG+TGG | 0.549997 | 2.2:+17346214 | None:intergenic |
| GGTAGCCAAATTTCTGAGGC+CGG | 0.554678 | 2.2:-17341607 | MS.gene060603:CDS |
| TTCTTGTTGTTAAAGTATGG+TGG | 0.556667 | 2.2:+17340342 | None:intergenic |
| AGAAAAGCCAGGATTGAGAA+TGG | 0.556831 | 2.2:+17343466 | None:intergenic |
| TCACCAAACACCCACAAAGC+TGG | 0.559084 | 2.2:+17344072 | None:intergenic |
| GAACTTGTCCCACAAAATCT+GGG | 0.564529 | 2.2:+17340439 | None:intergenic |
| TTATAGGTTCGAGCTATGAT+CGG | 0.564548 | 2.2:-17344896 | MS.gene060603:intron |
| CAAATGAATCATACTTGTCA+CGG | 0.566373 | 2.2:+17341744 | None:intergenic |
| GATCGCGCCGGTGGATCCGA+CGG | 0.567878 | 2.2:+17346223 | None:intergenic |
| TAGGGTAGAATTAAACTGGA+AGG | 0.572262 | 2.2:+17340383 | None:intergenic |
| AGAAAATGTACGAGCATGAG+AGG | 0.573475 | 2.2:+17341560 | None:intergenic |
| TAAGTGGATATACTGGATAG+AGG | 0.573634 | 2.2:+17341813 | None:intergenic |
| ATATACAATGTAGCTGGAGG+CGG | 0.574079 | 2.2:-17342979 | MS.gene060603:CDS |
| AATATAATGCTAAGAACCAC+CGG | 0.576125 | 2.2:+17341588 | None:intergenic |
| AGCTACCACAAGAACAGTCT+CGG | 0.577523 | 2.2:+17343904 | None:intergenic |
| TCGTCGAGCTGCAGCTAAAG+CGG | 0.577826 | 2.2:-17338524 | MS.gene060603:CDS |
| AGGGTAGAATTAAACTGGAA+GGG | 0.589279 | 2.2:+17340384 | None:intergenic |
| TATTATTCATGATTGTGATG+AGG | 0.592268 | 2.2:-17346080 | MS.gene060603:intron |
| TGTTGATAAGTCACTTCCAC+GGG | 0.592532 | 2.2:+17338491 | None:intergenic |
| GCGGTGAAAGTCATCTGTAT+GGG | 0.598420 | 2.2:-17342960 | MS.gene060603:CDS |
| TGTCACCGAGACTGTTCTTG+TGG | 0.598968 | 2.2:-17343909 | MS.gene060603:CDS |
| AATCGGACGGTAAAGATGAA+GGG | 0.602496 | 2.2:-17346165 | MS.gene060603:CDS |
| ACGGAGACGCTCTCAGCCGT+CGG | 0.617524 | 2.2:-17346239 | MS.gene060603:CDS |
| AGTCATCTGTATGGGACCGA+AGG | 0.619316 | 2.2:-17342952 | MS.gene060603:CDS |
| ATGTTGATAAGTCACTTCCA+CGG | 0.622509 | 2.2:+17338490 | None:intergenic |
| TGGATTGATGATGGTTTCGG+AGG | 0.624749 | 2.2:-17340414 | MS.gene060603:CDS |
| CTAATATACAATGTAGCTGG+AGG | 0.629355 | 2.2:-17342982 | MS.gene060603:CDS |
| AAGAACAGTCTCGGTGACAA+CGG | 0.630148 | 2.2:+17343913 | None:intergenic |
| GCTTTAGCTGCAGCTCGACG+AGG | 0.634925 | 2.2:+17338526 | None:intergenic |
| AAGCGGCCTTACCTGACCCG+TGG | 0.635167 | 2.2:-17338507 | MS.gene060603:CDS |
| GACAAAGCGTCCAAATCGGA+CGG | 0.643344 | 2.2:-17346178 | MS.gene060603:CDS |
| AGCCAAATTTCTGAGGCCGG+TGG | 0.644696 | 2.2:-17341604 | MS.gene060603:CDS |
| TGCAGGTAGCCAAATTTCTG+AGG | 0.648461 | 2.2:-17341611 | MS.gene060603:intron |
| CACCATTTGCTACATCGTCG+TGG | 0.651585 | 2.2:+17341487 | None:intergenic |
| GCTAGCAAAGAAACAGCCGC+TGG | 0.655782 | 2.2:+17343823 | None:intergenic |
| TGGAAGTGACTTATCAACAT+GGG | 0.672049 | 2.2:-17338487 | MS.gene060603:CDS |
| TAAGATGAAGATGATCGCGC+CGG | 0.674007 | 2.2:+17346211 | None:intergenic |
| GTGGAAGTGACTTATCAACA+TGG | 0.680036 | 2.2:-17338488 | MS.gene060603:CDS |
| GCTATGCTGTGCTTAGCCAG+CGG | 0.680101 | 2.2:-17343839 | MS.gene060603:CDS |
| ATACTTTAACAACAAGAACA+TGG | 0.681934 | 2.2:-17340337 | MS.gene060603:CDS |
| ATATATCTCAACCAACAAGA+CGG | 0.693105 | 2.2:-17346258 | MS.gene060603:CDS |
| AAGTGACTTATCAACATGGG+AGG | 0.701076 | 2.2:-17338484 | MS.gene060603:intron |
| ATAGGTTCGAGCTATGATCG+GGG | 0.756201 | 2.2:-17344894 | MS.gene060603:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 17338275 | 17346284 | 17338275 | ID=MS.gene060603 |
| chr2.2 | mRNA | 17338275 | 17346284 | 17338275 | ID=MS.gene060603.t1;Parent=MS.gene060603 |
| chr2.2 | exon | 17346081 | 17346284 | 17346081 | ID=MS.gene060603.t1.exon1;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17346081 | 17346284 | 17346081 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17344875 | 17344912 | 17344875 | ID=MS.gene060603.t1.exon2;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17344875 | 17344912 | 17344875 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17344065 | 17344152 | 17344065 | ID=MS.gene060603.t1.exon3;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17344065 | 17344152 | 17344065 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17343819 | 17343978 | 17343819 | ID=MS.gene060603.t1.exon4;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17343819 | 17343978 | 17343819 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17343387 | 17343604 | 17343387 | ID=MS.gene060603.t1.exon5;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17343387 | 17343604 | 17343387 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17342772 | 17343067 | 17342772 | ID=MS.gene060603.t1.exon6;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17342772 | 17343067 | 17342772 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17341724 | 17341838 | 17341724 | ID=MS.gene060603.t1.exon7;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17341724 | 17341838 | 17341724 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17341490 | 17341628 | 17341490 | ID=MS.gene060603.t1.exon8;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17341490 | 17341628 | 17341490 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17340320 | 17340516 | 17340320 | ID=MS.gene060603.t1.exon9;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17340320 | 17340516 | 17340320 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17338485 | 17338574 | 17338485 | ID=MS.gene060603.t1.exon10;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17338485 | 17338574 | 17338485 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| chr2.2 | exon | 17338275 | 17338406 | 17338275 | ID=MS.gene060603.t1.exon11;Parent=MS.gene060603.t1 |
| chr2.2 | CDS | 17338275 | 17338406 | 17338275 | ID=cds.MS.gene060603.t1;Parent=MS.gene060603.t1 |
| Gene Sequence |
| Protein sequence |
