Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065590.t1 | XP_003611986.1 | 99.5 | 627 | 2 | 1 | 1 | 627 | 1 | 626 | 0.00E+00 | 1267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065590.t1 | O82663 | 88.8 | 634 | 64 | 2 | 1 | 627 | 1 | 634 | 0.0e+00 | 1160.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065590.t1 | G7KDJ3 | 99.5 | 627 | 2 | 1 | 1 | 627 | 1 | 626 | 0.0e+00 | 1267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050359 | MS.gene065590 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene065590 | 0.81555 | 8.73E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065590 | MS.gene52620 | PPI |
| MS.gene065590 | MS.gene035805 | PPI |
| MS.gene065590 | MS.gene064542 | PPI |
| MS.gene065590 | MS.gene91547 | PPI |
| MS.gene065590 | MS.gene34192 | PPI |
| MS.gene065590 | MS.gene82919 | PPI |
| MS.gene065590 | MS.gene026963 | PPI |
| MS.gene065590 | MS.gene44056 | PPI |
| MS.gene065590 | MS.gene005189 | PPI |
| MS.gene065590 | MS.gene73119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065590.t1 | MTR_5g020050 | 99.522 | 627 | 2 | 1 | 1 | 627 | 1 | 626 | 0.0 | 1299 |
| MS.gene065590.t1 | MTR_5g020050 | 99.495 | 594 | 2 | 1 | 1 | 594 | 1 | 593 | 0.0 | 1228 |
| MS.gene065590.t1 | MTR_5g020050 | 99.812 | 533 | 1 | 0 | 95 | 627 | 1 | 533 | 0.0 | 1117 |
| MS.gene065590.t1 | MTR_6g007070 | 33.449 | 577 | 312 | 18 | 43 | 589 | 85 | 619 | 2.59e-78 | 261 |
| MS.gene065590.t1 | MTR_6g007070 | 32.917 | 480 | 253 | 16 | 138 | 587 | 2 | 442 | 1.73e-58 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065590.t1 | AT5G66760 | 88.801 | 634 | 64 | 2 | 1 | 627 | 1 | 634 | 0.0 | 1157 |
| MS.gene065590.t1 | AT2G18450 | 86.321 | 636 | 74 | 3 | 1 | 627 | 1 | 632 | 0.0 | 1123 |
| MS.gene065590.t1 | AT5G14760 | 33.116 | 613 | 340 | 16 | 5 | 587 | 47 | 619 | 1.50e-80 | 267 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGCTGCTTCAACAATTT+TGG | 0.104747 | 5.3:+11469785 | MS.gene065590:CDS |
| GGTTCCATCCTCCATGTTTA+AGG | 0.207924 | 5.3:-11469751 | None:intergenic |
| CCATCCTCTGTTCGAGAAAA+AGG | 0.221341 | 5.3:-11469242 | None:intergenic |
| ATGCAGGTGGTTACCATTAA+AGG | 0.242612 | 5.3:+11471880 | MS.gene065590:intron |
| ACTACCAACCTTCTGTTATA+AGG | 0.253374 | 5.3:-11470143 | None:intergenic |
| GTTATTGAACTAGAGAATTA+TGG | 0.259298 | 5.3:+11469215 | MS.gene065590:CDS |
| ATGAGATCCGAGAGAGTTAT+TGG | 0.260994 | 5.3:-11467076 | None:intergenic |
| GTGCTTCCCTACACATATAT+TGG | 0.266901 | 5.3:-11469184 | None:intergenic |
| ATCTGGATCGTCTCCTTTAA+TGG | 0.276389 | 5.3:-11471893 | None:intergenic |
| GCTTTATTGCACACTCTCTA+TGG | 0.278962 | 5.3:+11469448 | MS.gene065590:CDS |
| AGTCTCTCCTTGAGCACATC+TGG | 0.288142 | 5.3:-11471011 | None:intergenic |
| TTTCACCCAACGGGTATATA+TGG | 0.289741 | 5.3:+11470111 | MS.gene065590:CDS |
| AATGCCATGGCTGCCCGTGC+TGG | 0.295116 | 5.3:+11469959 | MS.gene065590:CDS |
| ACTTGGTGCAAATTCACTTT+TGG | 0.296486 | 5.3:+11471981 | MS.gene065590:CDS |
| TCTAGTTCAATAACCGCTTT+TGG | 0.311115 | 5.3:-11469206 | None:intergenic |
| GCATGCGCTGCTGATCGAAC+TGG | 0.312280 | 5.3:+11469421 | MS.gene065590:CDS |
| AGAAGGTCCGATTGGATTAC+AGG | 0.320125 | 5.3:+11475007 | MS.gene065590:CDS |
| GTGCTCAAGGAGAGACTTCC+TGG | 0.346533 | 5.3:+11471017 | MS.gene065590:CDS |
| TACCTACACCACGTCCTTCC+CGG | 0.354952 | 5.3:-11470400 | None:intergenic |
| ACTATTCATTATAAGATCTA+AGG | 0.357085 | 5.3:-11469515 | None:intergenic |
| TTTATTCTGCACCAGGGTTA+TGG | 0.364339 | 5.3:+11469887 | MS.gene065590:intron |
| GTTCCTGGATTGATGGCTGC+TGG | 0.366625 | 5.3:+11471922 | MS.gene065590:CDS |
| TTGAAGACAGAAGTTTGATA+TGG | 0.374329 | 5.3:+11472457 | MS.gene065590:CDS |
| TAATGCACAGTTGGCAAAAC+AGG | 0.377034 | 5.3:-11471095 | None:intergenic |
| GTCTCTCCTTGAGCACATCT+GGG | 0.382428 | 5.3:-11471010 | None:intergenic |
| AGAATATATCAGCGTGCATT+TGG | 0.386840 | 5.3:+11469266 | MS.gene065590:CDS |
| GTGGTAGGTGCTGGTGGTGC+TGG | 0.389745 | 5.3:+11467260 | MS.gene065590:CDS |
| TGCATTAGTTCCTGGATTGA+TGG | 0.400952 | 5.3:+11471915 | MS.gene065590:CDS |
| CTTCTAATGTTTCTTGTGTA+CGG | 0.411591 | 5.3:-11472288 | None:intergenic |
| CCAGAAAACGATTGCATGGC+TGG | 0.413440 | 5.3:+11472177 | MS.gene065590:CDS |
| GATCCAGATGCATTAGTTCC+TGG | 0.418490 | 5.3:+11471907 | MS.gene065590:CDS |
| AATCCAGGAACTAATGCATC+TGG | 0.422975 | 5.3:-11471910 | None:intergenic |
| CCAAAATTGTTGAAGCAGCT+TGG | 0.423552 | 5.3:-11469785 | None:intergenic |
| AAGTGGATGAAACACACTTT+GGG | 0.427082 | 5.3:+11472796 | MS.gene065590:CDS |
| TGGCCAGCATCCTTCTCTAA+AGG | 0.427404 | 5.3:-11472157 | None:intergenic |
| ATGGCTGCCCGTGCTGGGAT+CGG | 0.429577 | 5.3:+11469965 | MS.gene065590:CDS |
| ATGCCATGGCTGCCCGTGCT+GGG | 0.436921 | 5.3:+11469960 | MS.gene065590:CDS |
| TGTCTTCAACCTTGACATCA+TGG | 0.438871 | 5.3:-11472443 | None:intergenic |
| GGTGGTCAGAGCTTAAACTT+TGG | 0.442230 | 5.3:+11469287 | MS.gene065590:CDS |
| GATCGATGACTATGGAGATC+CGG | 0.443198 | 5.3:+11470381 | MS.gene065590:CDS |
| TTCCTGGATTGATGGCTGCT+GGG | 0.444126 | 5.3:+11471923 | MS.gene065590:CDS |
| CATGCGCTGCTGATCGAACT+GGG | 0.444697 | 5.3:+11469422 | MS.gene065590:CDS |
| TGTGTTAATTTGCAGATTCT+GGG | 0.444739 | 5.3:+11474978 | MS.gene065590:intron |
| GCTGGATTAAGAGCTGCTAT+TGG | 0.445704 | 5.3:+11467278 | MS.gene065590:CDS |
| TTCACACACTGTTGCAGCTC+AGG | 0.452239 | 5.3:+11467355 | MS.gene065590:CDS |
| CATTAATACACACGAGCCTT+AGG | 0.454281 | 5.3:-11475075 | None:intergenic |
| GCAGCCTGTGCATCAGTTCA+TGG | 0.461706 | 5.3:+11471949 | MS.gene065590:CDS |
| AAGCAGCTTGGAAACGATGC+AGG | 0.464061 | 5.3:-11469773 | None:intergenic |
| ACATATATTGGATGGCATCC+TGG | 0.467939 | 5.3:-11469172 | None:intergenic |
| CAGAGCTTAAACTTTGGAAA+AGG | 0.469151 | 5.3:+11469293 | MS.gene065590:CDS |
| CACAGTTGGCAAAACAGGAA+TGG | 0.470405 | 5.3:-11471090 | None:intergenic |
| AGTTTCAAGATCGATGACTA+TGG | 0.471006 | 5.3:+11470373 | MS.gene065590:CDS |
| ATCGATGACTATGGAGATCC+GGG | 0.485790 | 5.3:+11470382 | MS.gene065590:CDS |
| GACAAATTGAGAAATTCAAA+TGG | 0.487335 | 5.3:+11472199 | MS.gene065590:CDS |
| TCATGCCCGTGAGGACTTCA+CGG | 0.503927 | 5.3:+11472675 | MS.gene065590:CDS |
| GTGGTGAAGGTGGAATTCTT+AGG | 0.505148 | 5.3:+11470282 | MS.gene065590:CDS |
| TCCCCAGCAGCCATCAATCC+AGG | 0.505507 | 5.3:-11471925 | None:intergenic |
| ACAGTTGGCAAAACAGGAAT+GGG | 0.508684 | 5.3:-11471089 | None:intergenic |
| TGTTTAAGGCAATCACTCCT+TGG | 0.510690 | 5.3:-11469737 | None:intergenic |
| CGATCTTGAAACTACATCTC+GGG | 0.511202 | 5.3:-11470363 | None:intergenic |
| GGGTGGCATAAATGCTGCAT+TGG | 0.511697 | 5.3:+11468725 | MS.gene065590:intron |
| ACCTCTCCATGATGATTTGT+GGG | 0.512051 | 5.3:-11471134 | None:intergenic |
| GAAGTGGATGAAACACACTT+TGG | 0.512688 | 5.3:+11472795 | MS.gene065590:CDS |
| AGATAGATGTGATCTTTCTC+AGG | 0.513190 | 5.3:-11470969 | None:intergenic |
| TTTGTGCAATTTCACCCAAC+GGG | 0.515778 | 5.3:+11470102 | MS.gene065590:CDS |
| CTTGATCGAGACTATTGAGT+TGG | 0.516926 | 5.3:+11472585 | MS.gene065590:CDS |
| ATTGCACACTCTCTATGGCC+AGG | 0.517919 | 5.3:+11469453 | MS.gene065590:CDS |
| ACCTCAGCACATACATGCAC+TGG | 0.519071 | 5.3:+11469929 | MS.gene065590:CDS |
| GGTGGCATAAATGCTGCATT+GGG | 0.519373 | 5.3:+11468726 | MS.gene065590:CDS |
| TACCTCTCCATGATGATTTG+TGG | 0.520950 | 5.3:-11471135 | None:intergenic |
| GTGTATTGTGTCTCATAGCC+TGG | 0.521506 | 5.3:-11469471 | None:intergenic |
| CTGCTCCATATATACCCGTT+GGG | 0.522127 | 5.3:-11470116 | None:intergenic |
| GAAACAAAAGCCTTTAGAGA+AGG | 0.529387 | 5.3:+11472147 | MS.gene065590:CDS |
| CCCATGTTATAATGCACAGT+TGG | 0.530509 | 5.3:-11471104 | None:intergenic |
| CTCAAGTCCGATCCCAGCAC+GGG | 0.532597 | 5.3:-11469972 | None:intergenic |
| CAATGCACTCTGCAGAAGCT+AGG | 0.534552 | 5.3:+11472635 | MS.gene065590:CDS |
| CCGTGCTGGGATCGGACTTG+AGG | 0.534940 | 5.3:+11469973 | MS.gene065590:CDS |
| TGCAGAGTGCATTGTGACGC+AGG | 0.536303 | 5.3:-11472626 | None:intergenic |
| ATGTGGCGTTGCGTCGCTCG+TGG | 0.539513 | 5.3:+11467021 | MS.gene065590:CDS |
| GATCCCAGCACGGGCAGCCA+TGG | 0.541289 | 5.3:-11469963 | None:intergenic |
| ATATATCAGCGTGCATTTGG+TGG | 0.542986 | 5.3:+11469269 | MS.gene065590:CDS |
| TCCTGGATTGATGGCTGCTG+GGG | 0.543390 | 5.3:+11471924 | MS.gene065590:CDS |
| AACTAACCGTGAAGTCCTCA+CGG | 0.544443 | 5.3:-11472681 | None:intergenic |
| GTTGCAGAAATTCATAAGCC+AGG | 0.544526 | 5.3:+11472039 | MS.gene065590:CDS |
| TCCAATGTATTCAAATGCAC+AGG | 0.545981 | 5.3:-11475030 | None:intergenic |
| GCTATTGGACTTTCTGAACA+TGG | 0.547624 | 5.3:+11467293 | MS.gene065590:CDS |
| TAATACACACGAGCCTTAGG+AGG | 0.547973 | 5.3:-11475072 | None:intergenic |
| GTTCATGGTGCCAACAGACT+TGG | 0.548733 | 5.3:+11471964 | MS.gene065590:CDS |
| TGCCATCCAATATATGTGTA+GGG | 0.549829 | 5.3:+11469178 | MS.gene065590:CDS |
| ATGCCATCCAATATATGTGT+AGG | 0.552173 | 5.3:+11469177 | MS.gene065590:CDS |
| GCACAGGCCTGTAATCCAAT+CGG | 0.553394 | 5.3:-11475014 | None:intergenic |
| TCGATCTTGAAACTACATCT+CGG | 0.553813 | 5.3:-11470364 | None:intergenic |
| ACACAAGAAACATTAGAAGA+AGG | 0.555710 | 5.3:+11472292 | MS.gene065590:CDS |
| GGTTGAATCATTCCCTCCTA+AGG | 0.556270 | 5.3:+11475059 | MS.gene065590:CDS |
| GTCAATTAATTGATAAAACG+TGG | 0.556470 | 5.3:+11472412 | MS.gene065590:CDS |
| GAAATATGACTGAAGATGAC+TGG | 0.557787 | 5.3:+11468748 | MS.gene065590:CDS |
| GCCTGTGCATTTGAATACAT+TGG | 0.557956 | 5.3:+11475029 | MS.gene065590:CDS |
| GATGCAGTTGTGGTAGGTGC+TGG | 0.560650 | 5.3:+11467251 | MS.gene065590:CDS |
| GGAGAACGAGAAGGTCCGAT+TGG | 0.562403 | 5.3:+11474999 | MS.gene065590:CDS |
| GATCAGCAGCGCATGCGCAA+CGG | 0.562643 | 5.3:-11469414 | None:intergenic |
| GGCATTCCCACAAATCATCA+TGG | 0.562992 | 5.3:+11471128 | MS.gene065590:CDS |
| AGATCCTCCAATAACTCTCT+CGG | 0.565822 | 5.3:+11467069 | MS.gene065590:CDS |
| TTAGGTTCTCGTGGTGAAGG+TGG | 0.566896 | 5.3:+11470272 | MS.gene065590:intron |
| TGAATTTGCACCAAGTCTGT+TGG | 0.572143 | 5.3:-11471974 | None:intergenic |
| CCTGCTCCATATATACCCGT+TGG | 0.576795 | 5.3:-11470117 | None:intergenic |
| AGACAAGAGATGATGAGAAG+TGG | 0.576847 | 5.3:+11472779 | MS.gene065590:intron |
| ATGGAGATCCGGGAAGGACG+TGG | 0.577137 | 5.3:+11470392 | MS.gene065590:CDS |
| CCAACGGGTATATATGGAGC+AGG | 0.577748 | 5.3:+11470117 | MS.gene065590:CDS |
| ACACTGTCAAAGGAAGTGAT+TGG | 0.578615 | 5.3:+11468787 | MS.gene065590:CDS |
| TTTGAATACATTGGATGATG+AGG | 0.579255 | 5.3:+11475038 | MS.gene065590:CDS |
| AAGCCTTTAGAGAAGGATGC+TGG | 0.580540 | 5.3:+11472154 | MS.gene065590:CDS |
| CAACAGTGTGTGAACGAGTT+GGG | 0.581861 | 5.3:-11467346 | None:intergenic |
| GCACATACATGCACTGGAGA+TGG | 0.583607 | 5.3:+11469935 | MS.gene065590:CDS |
| GTTTGTGCAATTTCACCCAA+CGG | 0.583893 | 5.3:+11470101 | MS.gene065590:CDS |
| GGCACCATGAACTGATGCAC+AGG | 0.585331 | 5.3:-11471953 | None:intergenic |
| GCAGGTTGCCTTATAACAGA+AGG | 0.587925 | 5.3:+11470135 | MS.gene065590:CDS |
| GCAGTTGTGGTAGGTGCTGG+TGG | 0.588394 | 5.3:+11467254 | MS.gene065590:CDS |
| GGAGAGTTTCCATGATGTCA+AGG | 0.594515 | 5.3:+11472434 | MS.gene065590:CDS |
| TTCCCTACACATATATTGGA+TGG | 0.601606 | 5.3:-11469180 | None:intergenic |
| CAGATTCTGGGAGAACGAGA+AGG | 0.601740 | 5.3:+11474990 | MS.gene065590:intron |
| GCCAACTGTGCATTATAACA+TGG | 0.602535 | 5.3:+11471103 | MS.gene065590:CDS |
| GATCTTATAATGAATAGTGA+TGG | 0.605150 | 5.3:+11469520 | MS.gene065590:CDS |
| TCTATAATCTACAGGAGACC+AGG | 0.605175 | 5.3:+11469154 | MS.gene065590:intron |
| AGGAGTGATTGCCTTAAACA+TGG | 0.608685 | 5.3:+11469740 | MS.gene065590:CDS |
| GATGCAAGATCCTTTGCTGT+AGG | 0.609186 | 5.3:-11470341 | None:intergenic |
| TCAATTAATTGATAAAACGT+GGG | 0.614071 | 5.3:+11472413 | MS.gene065590:CDS |
| TGCTGGTGTGGATGTTACAA+AGG | 0.614475 | 5.3:+11471064 | MS.gene065590:CDS |
| ATTGCCTTAAACATGGAGGA+TGG | 0.617847 | 5.3:+11469747 | MS.gene065590:CDS |
| GCAACAGTGTGTGAACGAGT+TGG | 0.618205 | 5.3:-11467347 | None:intergenic |
| ACGATATGCTCCTACAGCAA+AGG | 0.620667 | 5.3:+11470331 | MS.gene065590:CDS |
| ATCCGGGAAGGACGTGGTGT+AGG | 0.620698 | 5.3:+11470398 | MS.gene065590:CDS |
| GCAGCAGTTTCAGAGATACC+AGG | 0.622188 | 5.3:-11471035 | None:intergenic |
| TCTCTCCTTGAGCACATCTG+GGG | 0.622970 | 5.3:-11471009 | None:intergenic |
| CACTGGAGATGGCAATGCCA+TGG | 0.623010 | 5.3:+11469946 | MS.gene065590:CDS |
| AGATCCGAGAGAGTTATTGG+AGG | 0.624161 | 5.3:-11467073 | None:intergenic |
| AGCAGCTTGGAAACGATGCA+GGG | 0.624947 | 5.3:-11469772 | None:intergenic |
| CACATGTATGACACTGTCAA+AGG | 0.626994 | 5.3:+11468777 | MS.gene065590:CDS |
| CCTCAAGTCCGATCCCAGCA+CGG | 0.631679 | 5.3:-11469973 | None:intergenic |
| TCCAGTGCATGTATGTGCTG+AGG | 0.632447 | 5.3:-11469930 | None:intergenic |
| CTGGCCAGAAAACGATTGCA+TGG | 0.633199 | 5.3:+11472173 | MS.gene065590:CDS |
| AAATATGATGCAGTTGTGGT+AGG | 0.635444 | 5.3:+11467245 | MS.gene065590:CDS |
| ATGACTATGGAGATCCGGGA+AGG | 0.637410 | 5.3:+11470386 | MS.gene065590:CDS |
| GGAATTCTTAGGAATAGCGA+GGG | 0.637607 | 5.3:+11470293 | MS.gene065590:CDS |
| CTCTCCTTGAGCACATCTGG+GGG | 0.639375 | 5.3:-11471008 | None:intergenic |
| GTCAAAGGAAGTGATTGGCT+AGG | 0.646721 | 5.3:+11468792 | MS.gene065590:CDS |
| TAGAGGAGCTCATGCCCGTG+AGG | 0.651502 | 5.3:+11472666 | MS.gene065590:CDS |
| GGATGTGTAGGTAGTTGCCA+AGG | 0.653439 | 5.3:+11469720 | MS.gene065590:intron |
| AATACACACGAGCCTTAGGA+GGG | 0.653658 | 5.3:-11475071 | None:intergenic |
| TCATAAATATGATGCAGTTG+TGG | 0.657398 | 5.3:+11467241 | MS.gene065590:CDS |
| GAAGCTAGGAAAGAGAGTAG+AGG | 0.661823 | 5.3:+11472649 | MS.gene065590:CDS |
| TGGAATTCTTAGGAATAGCG+AGG | 0.663327 | 5.3:+11470292 | MS.gene065590:CDS |
| TCCCACAAATCATCATGGAG+AGG | 0.663523 | 5.3:+11471133 | MS.gene065590:CDS |
| ACTAACCGTGAAGTCCTCAC+GGG | 0.668557 | 5.3:-11472680 | None:intergenic |
| TGACTGAAGATGACTGGAGG+TGG | 0.670220 | 5.3:+11468754 | MS.gene065590:CDS |
| TGAACGAGTTGGGAAAAGCT+TGG | 0.674771 | 5.3:-11467336 | None:intergenic |
| CTCAATAGTCTCGATCAAGT+CGG | 0.674901 | 5.3:-11472581 | None:intergenic |
| CCAACTGTGCATTATAACAT+GGG | 0.676041 | 5.3:+11471104 | MS.gene065590:CDS |
| ACTGTGCATTATAACATGGG+TGG | 0.685484 | 5.3:+11471107 | MS.gene065590:CDS |
| GAGCGAGTCTTACACCGTCG+TGG | 0.686915 | 5.3:+11467217 | MS.gene065590:intron |
| GTGTAGGGAAGCACCAAAAG+CGG | 0.703329 | 5.3:+11469193 | MS.gene065590:CDS |
| GAGGATCTGTTAGAAGAACG+TGG | 0.703865 | 5.3:-11467054 | None:intergenic |
| ATCATATTTATGATCCACGA+CGG | 0.704232 | 5.3:-11467231 | None:intergenic |
| GAATTCTTAGGAATAGCGAG+GGG | 0.709202 | 5.3:+11470294 | MS.gene065590:CDS |
| AGTGATTGCCTTAAACATGG+AGG | 0.738491 | 5.3:+11469743 | MS.gene065590:CDS |
| AGTGGATGAAACACACTTTG+GGG | 0.750579 | 5.3:+11472797 | MS.gene065590:CDS |
| AATTCTTAGGAATAGCGAGG+GGG | 0.754649 | 5.3:+11470295 | MS.gene065590:CDS |
| ATATGACTGAAGATGACTGG+AGG | 0.760494 | 5.3:+11468751 | MS.gene065590:CDS |
| AGAAAATCAAGTTACCCCAG+TGG | 0.762989 | 5.3:-11469808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 11467021 | 11475095 | 11467021 | ID=MS.gene065590 |
| chr5.3 | mRNA | 11467021 | 11475095 | 11467021 | ID=MS.gene065590.t1;Parent=MS.gene065590 |
| chr5.3 | exon | 11467021 | 11467116 | 11467021 | ID=MS.gene065590.t1.exon1;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11467021 | 11467116 | 11467021 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11467218 | 11467376 | 11467218 | ID=MS.gene065590.t1.exon2;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11467218 | 11467376 | 11467218 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11468726 | 11468813 | 11468726 | ID=MS.gene065590.t1.exon3;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11468726 | 11468813 | 11468726 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11469168 | 11469314 | 11469168 | ID=MS.gene065590.t1.exon4;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11469168 | 11469314 | 11469168 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11469401 | 11469541 | 11469401 | ID=MS.gene065590.t1.exon5;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11469401 | 11469541 | 11469401 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11469730 | 11469815 | 11469730 | ID=MS.gene065590.t1.exon6;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11469730 | 11469815 | 11469730 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11469902 | 11469994 | 11469902 | ID=MS.gene065590.t1.exon7;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11469902 | 11469994 | 11469902 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11470093 | 11470156 | 11470093 | ID=MS.gene065590.t1.exon8;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11470093 | 11470156 | 11470093 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11470276 | 11470419 | 11470276 | ID=MS.gene065590.t1.exon9;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11470276 | 11470419 | 11470276 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11470967 | 11471154 | 11470967 | ID=MS.gene065590.t1.exon10;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11470967 | 11471154 | 11470967 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11471886 | 11472060 | 11471886 | ID=MS.gene065590.t1.exon11;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11471886 | 11472060 | 11471886 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11472143 | 11472313 | 11472143 | ID=MS.gene065590.t1.exon12;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11472143 | 11472313 | 11472143 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11472409 | 11472478 | 11472409 | ID=MS.gene065590.t1.exon13;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11472409 | 11472478 | 11472409 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11472576 | 11472696 | 11472576 | ID=MS.gene065590.t1.exon14;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11472576 | 11472696 | 11472576 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11472781 | 11472818 | 11472781 | ID=MS.gene065590.t1.exon15;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11472781 | 11472818 | 11472781 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| chr5.3 | exon | 11474993 | 11475095 | 11474993 | ID=MS.gene065590.t1.exon16;Parent=MS.gene065590.t1 |
| chr5.3 | CDS | 11474993 | 11475095 | 11474993 | ID=cds.MS.gene065590.t1;Parent=MS.gene065590.t1 |
| Gene Sequence |
| Protein sequence |
