Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82919.t1 | XP_003618293.2 | 95.2 | 645 | 22 | 1 | 1 | 636 | 38 | 682 | 0.00E+00 | 1231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82919.t1 | Q94AY1 | 73.7 | 604 | 144 | 5 | 41 | 630 | 39 | 641 | 3.0e-252 | 872.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82919.t1 | G7KIS1 | 95.2 | 645 | 22 | 1 | 1 | 636 | 1 | 645 | 0.0e+00 | 1231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene82919 | 0.805139 | 1.54E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene82919 | 0.804382 | 2.22E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene82919 | 0.807547 | 4.79E-50 | -1.69E-46 |
| MS.gene052999 | MS.gene82919 | 0.844714 | 6.37E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene82919 | 0.826297 | 2.93E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene82919 | 0.802792 | 4.74E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene82919 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene82919 | 0.803744 | 3.01E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene82919 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene82919 | 0.8012 | 1.01E-48 | -1.69E-46 |
| MS.gene056166 | MS.gene82919 | 0.814632 | 1.40E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene82919 | 0.810415 | 1.17E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene82919 | 0.800899 | 1.16E-48 | -1.69E-46 |
| MS.gene057289 | MS.gene82919 | 0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene82919 | 0.843039 | 1.79E-58 | -1.69E-46 |
| MS.gene058120 | MS.gene82919 | 0.831912 | 1.28E-55 | -1.69E-46 |
| MS.gene060372 | MS.gene82919 | 0.843978 | 1.00E-58 | -1.69E-46 |
| MS.gene060837 | MS.gene82919 | 0.829952 | 3.86E-55 | -1.69E-46 |
| MS.gene06097 | MS.gene82919 | 0.820035 | 8.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59359 | MS.gene82919 | PPI |
| MS.gene56125 | MS.gene82919 | PPI |
| MS.gene010494 | MS.gene82919 | PPI |
| MS.gene82919 | MS.gene43111 | PPI |
| MS.gene92492 | MS.gene82919 | PPI |
| MS.gene065590 | MS.gene82919 | PPI |
| MS.gene047773 | MS.gene82919 | PPI |
| MS.gene82919 | MS.gene061388 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82919.t1 | MTR_6g007070 | 95.194 | 645 | 22 | 1 | 1 | 636 | 1 | 645 | 0.0 | 1273 |
| MS.gene82919.t1 | MTR_6g007070 | 95.532 | 470 | 12 | 1 | 176 | 636 | 1 | 470 | 0.0 | 933 |
| MS.gene82919.t1 | MTR_5g020050 | 32.781 | 543 | 285 | 18 | 109 | 601 | 67 | 579 | 4.48e-65 | 225 |
| MS.gene82919.t1 | MTR_5g020050 | 32.781 | 543 | 285 | 18 | 109 | 601 | 67 | 579 | 1.03e-64 | 224 |
| MS.gene82919.t1 | MTR_5g020050 | 32.554 | 513 | 268 | 17 | 137 | 601 | 4 | 486 | 1.38e-61 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82919.t1 | AT5G14760 | 73.675 | 604 | 144 | 5 | 41 | 630 | 39 | 641 | 0.0 | 907 |
| MS.gene82919.t1 | AT5G66760 | 32.545 | 550 | 295 | 17 | 109 | 610 | 75 | 596 | 1.87e-66 | 229 |
| MS.gene82919.t1 | AT2G18450 | 32.051 | 546 | 297 | 15 | 109 | 607 | 73 | 591 | 5.43e-63 | 220 |
Find 152 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTAATGCATCAAATTTA+TGG | 0.148179 | 6.1:+2576022 | MS.gene82919:CDS |
| ATCTCAGGCACCACCATTAT+TGG | 0.226815 | 6.1:-2576252 | None:intergenic |
| GAACTCCATGTACTGTTTAA+AGG | 0.233252 | 6.1:-2576423 | None:intergenic |
| CAGTTCTTTCCTCAATTCTT+TGG | 0.252539 | 6.1:-2576106 | None:intergenic |
| ACCATAAATTTGATGCATTA+AGG | 0.255305 | 6.1:-2576023 | None:intergenic |
| GCGCTCGAAGTTGCAAAATA+TGG | 0.271252 | 6.1:+2573134 | MS.gene82919:CDS |
| TCGGCAATCTTGAGGCAAAA+TGG | 0.300395 | 6.1:+2576199 | MS.gene82919:CDS |
| TTTCCATGGCTAAATTATAA+AGG | 0.315559 | 6.1:-2575579 | None:intergenic |
| TACTTCGACTTTGCCGTCAT+TGG | 0.343188 | 6.1:+2573086 | MS.gene82919:CDS |
| CTTTCACATTTGTCTCTCCT+TGG | 0.347133 | 6.1:-2575858 | None:intergenic |
| TAATGAGCAGCTGGAACAAC+GGG | 0.379827 | 6.1:-2575808 | None:intergenic |
| GCTTCGACATGTCTTCAGTA+TGG | 0.381330 | 6.1:+2575760 | MS.gene82919:CDS |
| TGAGAATATCTATAGCAAAA+TGG | 0.385922 | 6.1:-2574028 | None:intergenic |
| CTAGGCTCGGTTGGTTTAAG+AGG | 0.397419 | 6.1:-2575508 | None:intergenic |
| GACTTTGCCGTCATTGGGAG+TGG | 0.408394 | 6.1:+2573092 | MS.gene82919:CDS |
| GACATGTCTTCAGTATGGTT+TGG | 0.412175 | 6.1:+2575765 | MS.gene82919:CDS |
| CGGCAATCTTGAGGCAAAAT+GGG | 0.412535 | 6.1:+2576200 | MS.gene82919:CDS |
| TGGGAGAGAATTTCATTCTT+CGG | 0.415928 | 6.1:-2575724 | None:intergenic |
| AGACATGTCGAAGCAATGTT+TGG | 0.421059 | 6.1:-2575751 | None:intergenic |
| TTTCTCATTTCACATATCTC+AGG | 0.425640 | 6.1:-2576267 | None:intergenic |
| ATCTATCATGTTTAACTATG+TGG | 0.428518 | 6.1:+2576131 | MS.gene82919:CDS |
| TTCCAGGTTGTTTGTACTGA+AGG | 0.430020 | 6.1:+2573810 | MS.gene82919:intron |
| GATTGAGCGCGCTCTATTGA+AGG | 0.431605 | 6.1:+2573968 | MS.gene82919:CDS |
| AAGGCGACTTTACTAGCGTC+AGG | 0.435341 | 6.1:+2574382 | MS.gene82919:CDS |
| TTCTGATATCTGAAGCTGTA+AGG | 0.435505 | 6.1:+2575542 | MS.gene82919:CDS |
| TATAGATATTCTCACATGTC+AGG | 0.437598 | 6.1:+2574037 | MS.gene82919:CDS |
| TCGAAGCAATGTTTGGAAAG+TGG | 0.440885 | 6.1:-2575744 | None:intergenic |
| GTCATTGGGAGTGGAATTGC+TGG | 0.442400 | 6.1:+2573101 | MS.gene82919:CDS |
| TGAAGAGTTTCCGATTCTTA+CGG | 0.452294 | 6.1:-2573031 | None:intergenic |
| ACTTCGACTTTGCCGTCATT+GGG | 0.452624 | 6.1:+2573087 | MS.gene82919:CDS |
| AAGAGGAGAGCTTGCTCCTA+GGG | 0.459707 | 6.1:+2575624 | MS.gene82919:CDS |
| ATCAGTTCTCTGACTCGGTC+AGG | 0.460714 | 6.1:-2573834 | None:intergenic |
| GCAGCTGGAACAACGGGGAT+TGG | 0.461014 | 6.1:-2575802 | None:intergenic |
| GAAGTCTCTCACTTTCTTCG+AGG | 0.463646 | 6.1:-2576377 | None:intergenic |
| GCATGGATGGAAACCAATAA+TGG | 0.463945 | 6.1:+2576239 | MS.gene82919:CDS |
| ATGCCTTTGTATGATAAAAG+AGG | 0.468872 | 6.1:+2575607 | MS.gene82919:CDS |
| CCAACTTAGCACAACAAAAG+AGG | 0.468990 | 6.1:-2576290 | None:intergenic |
| TATCCGCGACCAAAGAATTG+AGG | 0.476613 | 6.1:+2576097 | MS.gene82919:CDS |
| GTACTGTTTAAAGGTGAACT+TGG | 0.479922 | 6.1:-2576414 | None:intergenic |
| AATGGGAGGAGTATCTGTTT+AGG | 0.484557 | 6.1:+2576217 | MS.gene82919:CDS |
| TCACAGGTTGCTACCGGAGA+TGG | 0.485133 | 6.1:+2575189 | MS.gene82919:intron |
| GCATTATCCCTAGGCTCGGT+TGG | 0.488079 | 6.1:-2575517 | None:intergenic |
| CCGACTGCGTTAGCTGATGA+AGG | 0.489710 | 6.1:+2575481 | MS.gene82919:CDS |
| CGAAGCAATGTTTGGAAAGT+GGG | 0.489970 | 6.1:-2575743 | None:intergenic |
| GCATTACTTCCAAGTGAAAA+CGG | 0.492861 | 6.1:-2576060 | None:intergenic |
| GGCCTCCACTCCGTAAGAAT+CGG | 0.493738 | 6.1:+2573021 | MS.gene82919:CDS |
| ATGGGCGCATCGTTTGATCA+TGG | 0.501801 | 6.1:+2573861 | MS.gene82919:CDS |
| TGCAATGTGCCCCTTCCAGC+AGG | 0.503184 | 6.1:-2572701 | None:intergenic |
| AAAGAGGAGAGCTTGCTCCT+AGG | 0.504089 | 6.1:+2575623 | MS.gene82919:CDS |
| TGGGCGCATCGTTTGATCAT+GGG | 0.505062 | 6.1:+2573862 | MS.gene82919:CDS |
| TGCCATTGCAATCCCATCTC+CGG | 0.507245 | 6.1:-2575202 | None:intergenic |
| CTTTCGAGGCACGAGAGCCG+CGG | 0.514164 | 6.1:+2576327 | MS.gene82919:CDS |
| AGTCAGAGAACTGATTGCTA+TGG | 0.516341 | 6.1:+2573842 | MS.gene82919:CDS |
| CTCTTAAACCAACCGAGCCT+AGG | 0.516548 | 6.1:+2575509 | MS.gene82919:CDS |
| ATTTGTCTCTCCTTGGAGCC+CGG | 0.517220 | 6.1:-2575851 | None:intergenic |
| GGAGTTCATGCCGGGCTCCA+AGG | 0.519634 | 6.1:+2575841 | MS.gene82919:CDS |
| CACAGGTTGCTACCGGAGAT+GGG | 0.520438 | 6.1:+2575190 | MS.gene82919:intron |
| TTACTATCACAGGTTGCTAC+CGG | 0.520501 | 6.1:+2575183 | MS.gene82919:intron |
| CTCTCACTTTCTTCGAGGTG+AGG | 0.521620 | 6.1:-2576372 | None:intergenic |
| GAATTTCATTCTTCGGCTTG+TGG | 0.521915 | 6.1:-2575717 | None:intergenic |
| TTTGTGATGAAGAGAGTGTC+CGG | 0.522063 | 6.1:+2573294 | MS.gene82919:CDS |
| TCTATCATGTTTAACTATGT+GGG | 0.522482 | 6.1:+2576132 | MS.gene82919:CDS |
| TTTCCTCAATTCTTTGGTCG+CGG | 0.522655 | 6.1:-2576100 | None:intergenic |
| GTCAGAGAACTGATTGCTAT+GGG | 0.522903 | 6.1:+2573843 | MS.gene82919:CDS |
| TGGTTAGTAGTGCGCTTTCG+AGG | 0.525344 | 6.1:+2576313 | MS.gene82919:CDS |
| TCGTTTGATCATGGGGAAGA+TGG | 0.525891 | 6.1:+2573870 | MS.gene82919:CDS |
| CAACTTGTATACCTGCTGGA+AGG | 0.530597 | 6.1:+2572690 | MS.gene82919:CDS |
| AACTTGTATACCTGCTGGAA+GGG | 0.531770 | 6.1:+2572691 | MS.gene82919:CDS |
| TTGATGCCTTGTTGATACAT+AGG | 0.531890 | 6.1:-2576465 | None:intergenic |
| ATGGCAACTTGTATACCTGC+TGG | 0.533609 | 6.1:+2572686 | MS.gene82919:CDS |
| AAGTGTGTCAACACCAAGAC+AGG | 0.536082 | 6.1:-2574230 | None:intergenic |
| ATGAAGGACACCATTGTAGC+TGG | 0.536650 | 6.1:+2573263 | MS.gene82919:CDS |
| CCACACATGTAATGAGCAGC+TGG | 0.536792 | 6.1:-2575817 | None:intergenic |
| TTTATAATTTAGCCATGGAA+AGG | 0.537153 | 6.1:+2575581 | MS.gene82919:CDS |
| AGTATCTGTTTAGGCATGGA+TGG | 0.538435 | 6.1:+2576226 | MS.gene82919:CDS |
| GTAGCATGTACCGGTCTACA+TGG | 0.539982 | 6.1:+2575901 | MS.gene82919:CDS |
| TCCTAAAACTACGAATCCGT+TGG | 0.544038 | 6.1:+2574423 | MS.gene82919:CDS |
| ATGTGTGGAGGAGTTCATGC+CGG | 0.544045 | 6.1:+2575832 | MS.gene82919:CDS |
| TTACAGAGTGACAGACTACA+AGG | 0.544296 | 6.1:+2572724 | MS.gene82919:CDS |
| AATTTGATGCATTAAGGTCG+AGG | 0.544390 | 6.1:-2576017 | None:intergenic |
| TGTAATACAAATTATGCTCA+AGG | 0.544971 | 6.1:+2573194 | MS.gene82919:CDS |
| CTCTTCATTTGATCAACTGA+CGG | 0.546770 | 6.1:-2575988 | None:intergenic |
| GTTCACCTTTAAACAGTACA+TGG | 0.546862 | 6.1:+2576418 | MS.gene82919:CDS |
| TCTGATATCTGAAGCTGTAA+GGG | 0.547002 | 6.1:+2575543 | MS.gene82919:CDS |
| GTAATGAGCAGCTGGAACAA+CGG | 0.547420 | 6.1:-2575809 | None:intergenic |
| GCTTAGCCCTTCAGATTCTG+TGG | 0.548632 | 6.1:+2573232 | MS.gene82919:CDS |
| GGTGGTAAGATTTCTTTCAA+AGG | 0.550563 | 6.1:+2574363 | MS.gene82919:intron |
| TCGGCTTGTGGCTAATGTCA+AGG | 0.551992 | 6.1:-2575705 | None:intergenic |
| TTCGAGGTGAGGAAAATCAA+TGG | 0.552185 | 6.1:-2576361 | None:intergenic |
| GGATCTGATATAACCTGTCT+TGG | 0.553031 | 6.1:+2574217 | MS.gene82919:CDS |
| TGTGTGGAGGAGTTCATGCC+GGG | 0.559044 | 6.1:+2575833 | MS.gene82919:CDS |
| TTCCGATTCTTACGGAGTGG+AGG | 0.562690 | 6.1:-2573023 | None:intergenic |
| CATCCTTTATAATTTAGCCA+TGG | 0.563439 | 6.1:+2575576 | MS.gene82919:CDS |
| GTTCATGCTGCTGATATGAC+AGG | 0.564443 | 6.1:+2573939 | MS.gene82919:CDS |
| TCTGTTTATCTGCAGCACCT+TGG | 0.565447 | 6.1:-2572985 | None:intergenic |
| TGTATATTGTTAGGTCTACA+AGG | 0.565452 | 6.1:+2572958 | MS.gene82919:intron |
| GTGAAAGGTCTGTATGTAGC+AGG | 0.569163 | 6.1:+2575874 | MS.gene82919:CDS |
| TGACTCTCCACAGAATCTGA+AGG | 0.570969 | 6.1:-2573239 | None:intergenic |
| AGCCTTTGTTATCACTGCAA+CGG | 0.571137 | 6.1:-2573159 | None:intergenic |
| TCTTAAACCAACCGAGCCTA+GGG | 0.572863 | 6.1:+2575510 | MS.gene82919:CDS |
| TCTGAAGCTGTAAGGGGTGA+TGG | 0.578436 | 6.1:+2575550 | MS.gene82919:CDS |
| CAACTTCGAGCGCATATCGA+AGG | 0.579394 | 6.1:-2573124 | None:intergenic |
| TCTATTTGCTCCATGTAGAC+CGG | 0.579965 | 6.1:-2575911 | None:intergenic |
| CAAAGGCATAAACCTTTCCA+TGG | 0.580948 | 6.1:-2575593 | None:intergenic |
| GGGCGCATCGTTTGATCATG+GGG | 0.589477 | 6.1:+2573863 | MS.gene82919:CDS |
| AAATTTATGGTCAAGACCTA+CGG | 0.591700 | 6.1:+2576035 | MS.gene82919:CDS |
| AAGATAAGCACCAGCTACAA+TGG | 0.593610 | 6.1:-2573273 | None:intergenic |
| AGCAATTCCACTCCCAATGA+CGG | 0.595127 | 6.1:-2573099 | None:intergenic |
| GGCGACTTTACTAGCGTCAG+GGG | 0.595378 | 6.1:+2574384 | MS.gene82919:CDS |
| AACTTGCATCTAGCGAGGGA+GGG | 0.596532 | 6.1:+2573894 | MS.gene82919:CDS |
| TGGAAATCACAGCTTGAGCT+CGG | 0.600156 | 6.1:-2575227 | None:intergenic |
| TAACTTGCATCTAGCGAGGG+AGG | 0.603097 | 6.1:+2573893 | MS.gene82919:CDS |
| CATCAGCTAACGCAGTCGGA+TGG | 0.603484 | 6.1:-2575477 | None:intergenic |
| AAATGCATTATCCCTAGGCT+CGG | 0.603895 | 6.1:-2575521 | None:intergenic |
| CTTCTTGCGACTACATCCCT+AGG | 0.603957 | 6.1:-2575640 | None:intergenic |
| ACTTGTATACCTGCTGGAAG+GGG | 0.604022 | 6.1:+2572692 | MS.gene82919:CDS |
| GAGGAGTATCTGTTTAGGCA+TGG | 0.605375 | 6.1:+2576222 | MS.gene82919:CDS |
| GCAGGTGAGGTAGCATGTAC+CGG | 0.606264 | 6.1:+2575892 | MS.gene82919:CDS |
| CGACTGCGTTAGCTGATGAA+GGG | 0.607186 | 6.1:+2575482 | MS.gene82919:CDS |
| TTGCATCTAGCGAGGGAGGG+AGG | 0.609173 | 6.1:+2573897 | MS.gene82919:CDS |
| AGTTTCCGATTCTTACGGAG+TGG | 0.609323 | 6.1:-2573026 | None:intergenic |
| AGGCGACTTTACTAGCGTCA+GGG | 0.609721 | 6.1:+2574383 | MS.gene82919:CDS |
| TAGGTCTACAAGGGTATCCA+AGG | 0.611556 | 6.1:+2572968 | MS.gene82919:intron |
| ATCAGAAATGCATTATCCCT+AGG | 0.611819 | 6.1:-2575526 | None:intergenic |
| CTGATATCTGAAGCTGTAAG+GGG | 0.611963 | 6.1:+2575544 | MS.gene82919:CDS |
| TTCTGTGGAGAGTCACATGA+AGG | 0.612546 | 6.1:+2573247 | MS.gene82919:CDS |
| CCTTCATCAGCTAACGCAGT+CGG | 0.612850 | 6.1:-2575481 | None:intergenic |
| TAGCAATCAGTTCTCTGACT+CGG | 0.612958 | 6.1:-2573839 | None:intergenic |
| CAAGGAGAGACAAATGTGAA+AGG | 0.613365 | 6.1:+2575859 | MS.gene82919:CDS |
| TTGTGATGAAGAGAGTGTCC+GGG | 0.613838 | 6.1:+2573295 | MS.gene82919:CDS |
| CCAAGTGAAAACGGCACCGT+AGG | 0.618506 | 6.1:-2576051 | None:intergenic |
| GACTCTCCACAGAATCTGAA+GGG | 0.625437 | 6.1:-2573238 | None:intergenic |
| ATGGTAACTTGCATCTAGCG+AGG | 0.628012 | 6.1:+2573889 | MS.gene82919:CDS |
| TGGTAACTTGCATCTAGCGA+GGG | 0.632551 | 6.1:+2573890 | MS.gene82919:CDS |
| CCAGCTGCTCATTACATGTG+TGG | 0.637539 | 6.1:+2575817 | MS.gene82919:CDS |
| TACCGGAGATGGGATTGCAA+TGG | 0.647199 | 6.1:+2575200 | MS.gene82919:CDS |
| AGGTCTGTATGTAGCAGGTG+AGG | 0.652476 | 6.1:+2575879 | MS.gene82919:CDS |
| AGCTAGCAACTCATTGCTCG+AGG | 0.659792 | 6.1:+2575936 | MS.gene82919:CDS |
| CAATCTTGAGGCAAAATGGG+AGG | 0.661771 | 6.1:+2576203 | MS.gene82919:CDS |
| GCTGCTCATTACATGTGTGG+AGG | 0.662270 | 6.1:+2575820 | MS.gene82919:CDS |
| CAATGGTGTAATGTAAACCG+CGG | 0.681165 | 6.1:-2576344 | None:intergenic |
| AAGCAGCCTATGTATCAACA+AGG | 0.691785 | 6.1:+2576459 | MS.gene82919:CDS |
| AATACAAATTATGCTCAAGG+TGG | 0.697654 | 6.1:+2573197 | MS.gene82919:CDS |
| AACCGTTGCAGTGATAACAA+AGG | 0.699415 | 6.1:+2573157 | MS.gene82919:CDS |
| GTATATTGTTAGGTCTACAA+GGG | 0.701087 | 6.1:+2572959 | MS.gene82919:intron |
| GAAGCTGTAAGGGGTGATGG+TGG | 0.705456 | 6.1:+2575553 | MS.gene82919:CDS |
| ACTTAATACTGAAACCCTAG+AGG | 0.714441 | 6.1:+2574249 | MS.gene82919:CDS |
| GCGACTTTACTAGCGTCAGG+GGG | 0.724080 | 6.1:+2574385 | MS.gene82919:CDS |
| TGGATGGAAACCAATAATGG+TGG | 0.724245 | 6.1:+2576242 | MS.gene82919:CDS |
| TACAGAGTGACAGACTACAA+GGG | 0.743097 | 6.1:+2572725 | MS.gene82919:CDS |
| AATGAGCAGCTGGAACAACG+GGG | 0.776584 | 6.1:-2575807 | None:intergenic |
| GAATCGTGAGATCAACAACG+TGG | 0.804485 | 6.1:+2576154 | MS.gene82919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAAATATATTCAATGA+TGG | - | chr6.1:2574318-2574337 | None:intergenic | 15.0% |
| !!! | TTGGTTTATTTTCTATTTTT+AGG | + | chr6.1:2574497-2574516 | MS.gene82919:intron | 15.0% |
| !! | AAAAAGGAAAAAAATCACAA+CGG | - | chr6.1:2575423-2575442 | None:intergenic | 20.0% |
| !! | AATTGAAAACAACAAAAAAG+TGG | - | chr6.1:2574822-2574841 | None:intergenic | 20.0% |
| !! | ACTTATATGACAAAACTAAT+AGG | - | chr6.1:2573332-2573351 | None:intergenic | 20.0% |
| !! | ATTACATTGTTTATACAGAT+AGG | - | chr6.1:2573373-2573392 | None:intergenic | 20.0% |
| !! | TAAAAATGGCATATTTGTAT+TGG | + | chr6.1:2574966-2574985 | MS.gene82919:intron | 20.0% |
| !! | TTATGTGTTAAGAAAATCTT+AGG | - | chr6.1:2574093-2574112 | None:intergenic | 20.0% |
| !!! | AATGACAAAATAAAAGTGTT+CGG | - | chr6.1:2574853-2574872 | None:intergenic | 20.0% |
| !!! | CAATAATGATTTTCAGAAAA+AGG | - | chr6.1:2575439-2575458 | None:intergenic | 20.0% |
| !!! | CTTTTTCTGAAAATCATTAT+TGG | + | chr6.1:2575437-2575456 | MS.gene82919:intron | 20.0% |
| !!! | TAATCGTTTTTAGCTTTTTT+AGG | + | chr6.1:2574342-2574361 | MS.gene82919:intron | 20.0% |
| !!! | TAATGATTTTCAGATGTTTT+GGG | + | chr6.1:2572934-2572953 | MS.gene82919:intron | 20.0% |
| ! | AAGTACAAAAGTTAATGCAA+TGG | - | chr6.1:2573787-2573806 | None:intergenic | 25.0% |
| ! | AATAAACCAAGCAGAAAAAT+AGG | - | chr6.1:2574487-2574506 | None:intergenic | 25.0% |
| ! | ACCATAAATTTGATGCATTA+AGG | - | chr6.1:2576026-2576045 | None:intergenic | 25.0% |
| ! | ACCTTAATGCATCAAATTTA+TGG | + | chr6.1:2576022-2576041 | MS.gene82919:CDS | 25.0% |
| ! | ACTTACAAAAAGATCTTTCA+TGG | + | chr6.1:2572798-2572817 | MS.gene82919:CDS | 25.0% |
| ! | ATAACTCTTAATATGATTCC+TGG | - | chr6.1:2572837-2572856 | None:intergenic | 25.0% |
| ! | ATCTATCATGTTTAACTATG+TGG | + | chr6.1:2576131-2576150 | MS.gene82919:CDS | 25.0% |
| ! | ATTATTGAATAGTCATCATG+TGG | + | chr6.1:2574589-2574608 | MS.gene82919:intron | 25.0% |
| ! | CATTGTATCTTACAATTCAT+AGG | + | chr6.1:2574990-2575009 | MS.gene82919:intron | 25.0% |
| ! | GAACTTGGAAAAATAATTGT+TGG | - | chr6.1:2576402-2576421 | None:intergenic | 25.0% |
| ! | TCTATCATGTTTAACTATGT+GGG | + | chr6.1:2576132-2576151 | MS.gene82919:CDS | 25.0% |
| ! | TGAGAATATCTATAGCAAAA+TGG | - | chr6.1:2574031-2574050 | None:intergenic | 25.0% |
| ! | TGTAATACAAATTATGCTCA+AGG | + | chr6.1:2573194-2573213 | MS.gene82919:CDS | 25.0% |
| ! | TTCTTAACACATAATGTTGA+TGG | + | chr6.1:2574099-2574118 | MS.gene82919:intron | 25.0% |
| ! | TTTATAATTTAGCCATGGAA+AGG | + | chr6.1:2575581-2575600 | MS.gene82919:CDS | 25.0% |
| ! | TTTCCATGGCTAAATTATAA+AGG | - | chr6.1:2575582-2575601 | None:intergenic | 25.0% |
| !! | AATGATTTTCAGATGTTTTG+GGG | + | chr6.1:2572935-2572954 | MS.gene82919:intron | 25.0% |
| !! | ATTCATTCAAACTCTAGAAA+AGG | - | chr6.1:2574456-2574475 | None:intergenic | 25.0% |
| !! | CTAATGATTTTCAGATGTTT+TGG | + | chr6.1:2572933-2572952 | MS.gene82919:intron | 25.0% |
| !! | GTTCTCTTTTTCTTTTCTTT+TGG | + | chr6.1:2574063-2574082 | MS.gene82919:intron | 25.0% |
| !! | TTTTCAATGTTGTCAATTAG+CGG | + | chr6.1:2573582-2573601 | MS.gene82919:intron | 25.0% |
| !!! | AACTTTTGTACTTTTTTTCC+AGG | + | chr6.1:2573794-2573813 | MS.gene82919:intron | 25.0% |
| !!! | ACATCAATATCTGTTTTGAT+CGG | + | chr6.1:2572862-2572881 | MS.gene82919:intron | 25.0% |
| !!! | GAACATTTTGAATGTTTTGA+TGG | + | chr6.1:2574157-2574176 | MS.gene82919:intron | 25.0% |
| !!! | TTTAGTTTTGTATCTAATCG+AGG | - | chr6.1:2574667-2574686 | None:intergenic | 25.0% |
| AAATTTATGGTCAAGACCTA+CGG | + | chr6.1:2576035-2576054 | MS.gene82919:CDS | 30.0% | |
| AAGCAGAAAAATAGGAGAAA+AGG | - | chr6.1:2574479-2574498 | None:intergenic | 30.0% | |
| AATACAAAATGTGGCTATAG+TGG | + | chr6.1:2573665-2573684 | MS.gene82919:intron | 30.0% | |
| AATACAAATTATGCTCAAGG+TGG | + | chr6.1:2573197-2573216 | MS.gene82919:CDS | 30.0% | |
| ACGCGATTTAATACAAAATG+TGG | + | chr6.1:2573656-2573675 | MS.gene82919:intron | 30.0% | |
| ACTTGAATCTTGAACTATTG+AGG | + | chr6.1:2574882-2574901 | MS.gene82919:intron | 30.0% | |
| AGCTGCATTATAAAATCATC+TGG | - | chr6.1:2574554-2574573 | None:intergenic | 30.0% | |
| ATACTTGTCAATGTACCTTT+AGG | + | chr6.1:2573538-2573557 | MS.gene82919:intron | 30.0% | |
| ATGCCTTTGTATGATAAAAG+AGG | + | chr6.1:2575607-2575626 | MS.gene82919:CDS | 30.0% | |
| ATTCCATTAGTGAAGGAATA+AGG | + | chr6.1:2575341-2575360 | MS.gene82919:intron | 30.0% | |
| ATTTATAGCTTACTCCATGT+TGG | - | chr6.1:2575250-2575269 | None:intergenic | 30.0% | |
| ATTTCCTCATGCAAAAAAGA+TGG | + | chr6.1:2573053-2573072 | MS.gene82919:CDS | 30.0% | |
| CATCCTTTATAATTTAGCCA+TGG | + | chr6.1:2575576-2575595 | MS.gene82919:CDS | 30.0% | |
| GATTCAAATCACGAATCAAA+AGG | - | chr6.1:2575016-2575035 | None:intergenic | 30.0% | |
| GTATATTGTTAGGTCTACAA+GGG | + | chr6.1:2572959-2572978 | MS.gene82919:intron | 30.0% | |
| GTTCATCACATATTTCCTAA+AGG | - | chr6.1:2573556-2573575 | None:intergenic | 30.0% | |
| TAGAAAAGGAGAATTACCAA+CGG | - | chr6.1:2574442-2574461 | None:intergenic | 30.0% | |
| TATAGATATTCTCACATGTC+AGG | + | chr6.1:2574037-2574056 | MS.gene82919:CDS | 30.0% | |
| TATCCTTATTCCTTCACTAA+TGG | - | chr6.1:2575347-2575366 | None:intergenic | 30.0% | |
| TGTATATTGTTAGGTCTACA+AGG | + | chr6.1:2572958-2572977 | MS.gene82919:intron | 30.0% | |
| TTCAATGATGGCAGTAATTT+AGG | - | chr6.1:2574306-2574325 | None:intergenic | 30.0% | |
| TTTCTCATTTCACATATCTC+AGG | - | chr6.1:2576270-2576289 | None:intergenic | 30.0% | |
| ! | CATGGTAAACATTTTAAACC+AGG | + | chr6.1:2572816-2572835 | MS.gene82919:intron | 30.0% |
| ! | TAAACAGATGTGAGTTTTCT+AGG | + | chr6.1:2573000-2573019 | MS.gene82919:CDS | 30.0% |
| ! | TCTCCTCTTTTATCATACAA+AGG | - | chr6.1:2575613-2575632 | None:intergenic | 30.0% |
| ! | TGAAAGTAGATCTTCCTTTT+CGG | + | chr6.1:2572893-2572912 | MS.gene82919:intron | 30.0% |
| !! | TTTTCTCCTATTTTTCTGCT+TGG | + | chr6.1:2574478-2574497 | MS.gene82919:intron | 30.0% |
| !!! | TCGTTTTTAGCTTTTTTAGG+TGG | + | chr6.1:2574345-2574364 | MS.gene82919:intron | 30.0% |
| AAAAATGAACCATCTCGTTC+TGG | + | chr6.1:2575071-2575090 | MS.gene82919:intron | 35.0% | |
| AATTTGATGCATTAAGGTCG+AGG | - | chr6.1:2576020-2576039 | None:intergenic | 35.0% | |
| ACAGATAGGAACAAAGTTCT+TGG | - | chr6.1:2573359-2573378 | None:intergenic | 35.0% | |
| ACTTAATACTGAAACCCTAG+AGG | + | chr6.1:2574249-2574268 | MS.gene82919:CDS | 35.0% | |
| AGTGCTTATTCCATTAGTGA+AGG | + | chr6.1:2575334-2575353 | MS.gene82919:intron | 35.0% | |
| ATCAGAAATGCATTATCCCT+AGG | - | chr6.1:2575529-2575548 | None:intergenic | 35.0% | |
| CAGTTCTTTCCTCAATTCTT+TGG | - | chr6.1:2576109-2576128 | None:intergenic | 35.0% | |
| CTCTTCATTTGATCAACTGA+CGG | - | chr6.1:2575991-2576010 | None:intergenic | 35.0% | |
| GAAAACAACAAAAAAGTGGC+TGG | - | chr6.1:2574818-2574837 | None:intergenic | 35.0% | |
| GAACTCCATGTACTGTTTAA+AGG | - | chr6.1:2576426-2576445 | None:intergenic | 35.0% | |
| GCATTACTTCCAAGTGAAAA+CGG | - | chr6.1:2576063-2576082 | None:intergenic | 35.0% | |
| GGTGGTAAGATTTCTTTCAA+AGG | + | chr6.1:2574363-2574382 | MS.gene82919:intron | 35.0% | |
| GTACTGTTTAAAGGTGAACT+TGG | - | chr6.1:2576417-2576436 | None:intergenic | 35.0% | |
| GTCTAAATTCCGCTACATTA+TGG | - | chr6.1:2573616-2573635 | None:intergenic | 35.0% | |
| GTTCACCTTTAAACAGTACA+TGG | + | chr6.1:2576418-2576437 | MS.gene82919:CDS | 35.0% | |
| TATGACAAAACTAATAGGCC+AGG | - | chr6.1:2573327-2573346 | None:intergenic | 35.0% | |
| TGAAGAGTTTCCGATTCTTA+CGG | - | chr6.1:2573034-2573053 | None:intergenic | 35.0% | |
| TGGGAGAGAATTTCATTCTT+CGG | - | chr6.1:2575727-2575746 | None:intergenic | 35.0% | |
| TTTCGGATCACAGAAAATGA+CGG | - | chr6.1:2573727-2573746 | None:intergenic | 35.0% | |
| ! | CATTTTCTGTGATCCGAAAT+TGG | + | chr6.1:2573728-2573747 | MS.gene82919:intron | 35.0% |
| ! | CGCGGATAAAATTTTGTCAT+TGG | - | chr6.1:2576085-2576104 | None:intergenic | 35.0% |
| ! | GAAAGTAGATCTTCCTTTTC+GGG | + | chr6.1:2572894-2572913 | MS.gene82919:intron | 35.0% |
| ! | TCTGATATCTGAAGCTGTAA+GGG | + | chr6.1:2575543-2575562 | MS.gene82919:CDS | 35.0% |
| ! | TTCTGATATCTGAAGCTGTA+AGG | + | chr6.1:2575542-2575561 | MS.gene82919:CDS | 35.0% |
| ! | TTGATGCCTTGTTGATACAT+AGG | - | chr6.1:2576468-2576487 | None:intergenic | 35.0% |
| !! | GACATGCTTTTTACTATCAC+AGG | + | chr6.1:2575173-2575192 | MS.gene82919:intron | 35.0% |
| !! | GCAAAGTCGAAGTATTTTGT+AGG | - | chr6.1:2573080-2573099 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTTTCA+TGG | + | chr6.1:2573481-2573500 | MS.gene82919:intron | 35.0% |
| !!! | GTTTTGGGGTGTATATTGTT+AGG | + | chr6.1:2572949-2572968 | MS.gene82919:intron | 35.0% |
| !!! | TTTCGTTGCGCTTTTTAAGT+TGG | - | chr6.1:2575675-2575694 | None:intergenic | 35.0% |
| AAATGCATTATCCCTAGGCT+CGG | - | chr6.1:2575524-2575543 | None:intergenic | 40.0% | |
| AACCGTTGCAGTGATAACAA+AGG | + | chr6.1:2573157-2573176 | MS.gene82919:CDS | 40.0% | |
| AACTTGTATACCTGCTGGAA+GGG | + | chr6.1:2572691-2572710 | MS.gene82919:CDS | 40.0% | |
| AAGATAAGCACCAGCTACAA+TGG | - | chr6.1:2573276-2573295 | None:intergenic | 40.0% | |
| AAGCACTTGTGAGATTGTGT+GGG | - | chr6.1:2575321-2575340 | None:intergenic | 40.0% | |
| AAGCAGCCTATGTATCAACA+AGG | + | chr6.1:2576459-2576478 | MS.gene82919:CDS | 40.0% | |
| AAGCTTTCATGGAGAGCTTA+TGG | + | chr6.1:2573492-2573511 | MS.gene82919:intron | 40.0% | |
| AATACTGAAACCCTAGAGGT+GGG | + | chr6.1:2574253-2574272 | MS.gene82919:intron | 40.0% | |
| AATGCAGCTTGATTGCATTC+TGG | + | chr6.1:2574565-2574584 | MS.gene82919:intron | 40.0% | |
| AGACATGTCGAAGCAATGTT+TGG | - | chr6.1:2575754-2575773 | None:intergenic | 40.0% | |
| AGATTGTGTGGGAGAGTTTA+TGG | - | chr6.1:2575310-2575329 | None:intergenic | 40.0% | |
| AGCGGAATTTAGACAAACTG+CGG | + | chr6.1:2573622-2573641 | MS.gene82919:intron | 40.0% | |
| AGTATCTGTTTAGGCATGGA+TGG | + | chr6.1:2576226-2576245 | MS.gene82919:CDS | 40.0% | |
| AGTCAGAGAACTGATTGCTA+TGG | + | chr6.1:2573842-2573861 | MS.gene82919:CDS | 40.0% | |
| ATCAAAGAATGAGCCCGAAA+AGG | - | chr6.1:2572910-2572929 | None:intergenic | 40.0% | |
| CAAGGAGAGACAAATGTGAA+AGG | + | chr6.1:2575859-2575878 | MS.gene82919:CDS | 40.0% | |
| CAATGGTGTAATGTAAACCG+CGG | - | chr6.1:2576347-2576366 | None:intergenic | 40.0% | |
| CAGTACGATCATATCAAGCA+TGG | - | chr6.1:2575051-2575070 | None:intergenic | 40.0% | |
| CCAACTTAGCACAACAAAAG+AGG | - | chr6.1:2576293-2576312 | None:intergenic | 40.0% | |
| CGAAGCAATGTTTGGAAAGT+GGG | - | chr6.1:2575746-2575765 | None:intergenic | 40.0% | |
| CTGAAAATCATTATTGGCGC+AGG | + | chr6.1:2575443-2575462 | MS.gene82919:intron | 40.0% | |
| CTTTCACATTTGTCTCTCCT+TGG | - | chr6.1:2575861-2575880 | None:intergenic | 40.0% | |
| GACATGTCTTCAGTATGGTT+TGG | + | chr6.1:2575765-2575784 | MS.gene82919:CDS | 40.0% | |
| GAGAAAAATCGGCAATCTTG+AGG | + | chr6.1:2576191-2576210 | MS.gene82919:CDS | 40.0% | |
| GAGACAGCTGAGAGAAAAAT+CGG | + | chr6.1:2576180-2576199 | MS.gene82919:CDS | 40.0% | |
| GCATGGATGGAAACCAATAA+TGG | + | chr6.1:2576239-2576258 | MS.gene82919:CDS | 40.0% | |
| GCTATAGCACCATAATGTAG+CGG | + | chr6.1:2573604-2573623 | MS.gene82919:intron | 40.0% | |
| GCTGTATCTCTTGTATTGCA+TGG | + | chr6.1:2575126-2575145 | MS.gene82919:intron | 40.0% | |
| GGATCTGATATAACCTGTCT+TGG | + | chr6.1:2574217-2574236 | MS.gene82919:CDS | 40.0% | |
| GTCAGAGAACTGATTGCTAT+GGG | + | chr6.1:2573843-2573862 | MS.gene82919:CDS | 40.0% | |
| TAAGCACTTGTGAGATTGTG+TGG | - | chr6.1:2575322-2575341 | None:intergenic | 40.0% | |
| TAATACTGAAACCCTAGAGG+TGG | + | chr6.1:2574252-2574271 | MS.gene82919:intron | 40.0% | |
| TACAGAGTGACAGACTACAA+GGG | + | chr6.1:2572725-2572744 | MS.gene82919:CDS | 40.0% | |
| TAGCAATCAGTTCTCTGACT+CGG | - | chr6.1:2573842-2573861 | None:intergenic | 40.0% | |
| TCAAGCTGTGATTTCCAACA+TGG | + | chr6.1:2575233-2575252 | MS.gene82919:intron | 40.0% | |
| TCCTAAAACTACGAATCCGT+TGG | + | chr6.1:2574423-2574442 | MS.gene82919:CDS | 40.0% | |
| TCGAAGCAATGTTTGGAAAG+TGG | - | chr6.1:2575747-2575766 | None:intergenic | 40.0% | |
| TCTATTTGCTCCATGTAGAC+CGG | - | chr6.1:2575914-2575933 | None:intergenic | 40.0% | |
| TGCTAACTGAAACATGTTGC+TGG | + | chr6.1:2574183-2574202 | MS.gene82919:intron | 40.0% | |
| TGGATGGAAACCAATAATGG+TGG | + | chr6.1:2576242-2576261 | MS.gene82919:CDS | 40.0% | |
| TTACAGAGTGACAGACTACA+AGG | + | chr6.1:2572724-2572743 | MS.gene82919:CDS | 40.0% | |
| TTACTATCACAGGTTGCTAC+CGG | + | chr6.1:2575183-2575202 | MS.gene82919:intron | 40.0% | |
| TTCCAGGTTGTTTGTACTGA+AGG | + | chr6.1:2573810-2573829 | MS.gene82919:intron | 40.0% | |
| TTCGAGGTGAGGAAAATCAA+TGG | - | chr6.1:2576364-2576383 | None:intergenic | 40.0% | |
| TTTCCTCAATTCTTTGGTCG+CGG | - | chr6.1:2576103-2576122 | None:intergenic | 40.0% | |
| ! | AGCATGTATCGACACTACAA+CGG | - | chr6.1:2574625-2574644 | None:intergenic | 40.0% |
| ! | AGCCTTTGTTATCACTGCAA+CGG | - | chr6.1:2573162-2573181 | None:intergenic | 40.0% |
| ! | CAAAGGCATAAACCTTTCCA+TGG | - | chr6.1:2575596-2575615 | None:intergenic | 40.0% |
| ! | CTGATATCTGAAGCTGTAAG+GGG | + | chr6.1:2575544-2575563 | MS.gene82919:CDS | 40.0% |
| ! | GAATTTCATTCTTCGGCTTG+TGG | - | chr6.1:2575720-2575739 | None:intergenic | 40.0% |
| ! | TGGCTGGCTATACTAAGTTT+AGG | - | chr6.1:2574802-2574821 | None:intergenic | 40.0% |
| !! | AATGGGAGGAGTATCTGTTT+AGG | + | chr6.1:2576217-2576236 | MS.gene82919:CDS | 40.0% |
| !! | ACCAACGGATTCGTAGTTTT+AGG | - | chr6.1:2574427-2574446 | None:intergenic | 40.0% |
| !! | ATATTGCTTTTCCCACCTCT+AGG | - | chr6.1:2574267-2574286 | None:intergenic | 40.0% |
| !! | CCTCTTTTGTTGTGCTAAGT+TGG | + | chr6.1:2576290-2576309 | MS.gene82919:CDS | 40.0% |
| !! | CTTTTGTTGTGCTAAGTTGG+TGG | + | chr6.1:2576293-2576312 | MS.gene82919:CDS | 40.0% |
| !! | TATTGCTTTTCCCACCTCTA+GGG | - | chr6.1:2574266-2574285 | None:intergenic | 40.0% |
| !! | TTTGTGATGAAGAGAGTGTC+CGG | + | chr6.1:2573294-2573313 | MS.gene82919:CDS | 40.0% |
| !!! | AGGACCATCTTTTTTGCATG+AGG | - | chr6.1:2573060-2573079 | None:intergenic | 40.0% |
| AAGTGTGTCAACACCAAGAC+AGG | - | chr6.1:2574233-2574252 | None:intergenic | 45.0% | |
| ACTAGCCGTGTTGCCAATTT+CGG | - | chr6.1:2573744-2573763 | None:intergenic | 45.0% | |
| ACTTCGACTTTGCCGTCATT+GGG | + | chr6.1:2573087-2573106 | MS.gene82919:CDS | 45.0% | |
| ACTTGTATACCTGCTGGAAG+GGG | + | chr6.1:2572692-2572711 | MS.gene82919:CDS | 45.0% | |
| AGCAATTCCACTCCCAATGA+CGG | - | chr6.1:2573102-2573121 | None:intergenic | 45.0% | |
| AGTTTCCGATTCTTACGGAG+TGG | - | chr6.1:2573029-2573048 | None:intergenic | 45.0% | |
| ATCTCAGGCACCACCATTAT+TGG | - | chr6.1:2576255-2576274 | None:intergenic | 45.0% | |
| ATGAAGGACACCATTGTAGC+TGG | + | chr6.1:2573263-2573282 | MS.gene82919:CDS | 45.0% | |
| ATGCAACAACCAGAACGAGA+TGG | - | chr6.1:2575083-2575102 | None:intergenic | 45.0% | |
| ATGGCAACTTGTATACCTGC+TGG | + | chr6.1:2572686-2572705 | MS.gene82919:CDS | 45.0% | |
| CAACTTGTATACCTGCTGGA+AGG | + | chr6.1:2572690-2572709 | MS.gene82919:CDS | 45.0% | |
| CAATCTTGAGGCAAAATGGG+AGG | + | chr6.1:2576203-2576222 | MS.gene82919:CDS | 45.0% | |
| CGGCAATCTTGAGGCAAAAT+GGG | + | chr6.1:2576200-2576219 | MS.gene82919:CDS | 45.0% | |
| GAAGTCTCTCACTTTCTTCG+AGG | - | chr6.1:2576380-2576399 | None:intergenic | 45.0% | |
| GAATCGTGAGATCAACAACG+TGG | + | chr6.1:2576154-2576173 | MS.gene82919:CDS | 45.0% | |
| GACTCTCCACAGAATCTGAA+GGG | - | chr6.1:2573241-2573260 | None:intergenic | 45.0% | |
| GCGCTCGAAGTTGCAAAATA+TGG | + | chr6.1:2573134-2573153 | MS.gene82919:CDS | 45.0% | |
| GCTTCGACATGTCTTCAGTA+TGG | + | chr6.1:2575760-2575779 | MS.gene82919:CDS | 45.0% | |
| GTAATGAGCAGCTGGAACAA+CGG | - | chr6.1:2575812-2575831 | None:intergenic | 45.0% | |
| GTCCTTCAGTACAAACAACC+TGG | - | chr6.1:2573815-2573834 | None:intergenic | 45.0% | |
| GTGAAAGGTCTGTATGTAGC+AGG | + | chr6.1:2575874-2575893 | MS.gene82919:CDS | 45.0% | |
| GTGATCCGAAATTGGCAACA+CGG | + | chr6.1:2573736-2573755 | MS.gene82919:intron | 45.0% | |
| GTTCATGCTGCTGATATGAC+AGG | + | chr6.1:2573939-2573958 | MS.gene82919:CDS | 45.0% | |
| TAATAGGCCAGGAACATACC+CGG | - | chr6.1:2573316-2573335 | None:intergenic | 45.0% | |
| TAATGAGCAGCTGGAACAAC+GGG | - | chr6.1:2575811-2575830 | None:intergenic | 45.0% | |
| TACTTCGACTTTGCCGTCAT+TGG | + | chr6.1:2573086-2573105 | MS.gene82919:CDS | 45.0% | |
| TATCCGCGACCAAAGAATTG+AGG | + | chr6.1:2576097-2576116 | MS.gene82919:CDS | 45.0% | |
| TCGGCAATCTTGAGGCAAAA+TGG | + | chr6.1:2576199-2576218 | MS.gene82919:CDS | 45.0% | |
| TCGTTTGATCATGGGGAAGA+TGG | + | chr6.1:2573870-2573889 | MS.gene82919:CDS | 45.0% | |
| TCTGTTTATCTGCAGCACCT+TGG | - | chr6.1:2572988-2573007 | None:intergenic | 45.0% | |
| TCTTAAACCAACCGAGCCTA+GGG | + | chr6.1:2575510-2575529 | MS.gene82919:CDS | 45.0% | |
| TGACTCTCCACAGAATCTGA+AGG | - | chr6.1:2573242-2573261 | None:intergenic | 45.0% | |
| TGGAAATCACAGCTTGAGCT+CGG | - | chr6.1:2575230-2575249 | None:intergenic | 45.0% | |
| TTCTGTGGAGAGTCACATGA+AGG | + | chr6.1:2573247-2573266 | MS.gene82919:CDS | 45.0% | |
| ! | ATGGTAACTTGCATCTAGCG+AGG | + | chr6.1:2573889-2573908 | MS.gene82919:CDS | 45.0% |
| ! | GCATGTATCGACACTACAAC+GGG | - | chr6.1:2574624-2574643 | None:intergenic | 45.0% |
| ! | TGGTAACTTGCATCTAGCGA+GGG | + | chr6.1:2573890-2573909 | MS.gene82919:CDS | 45.0% |
| !! | AAACATGTTGCTGGTGTTGC+AGG | + | chr6.1:2574192-2574211 | MS.gene82919:intron | 45.0% |
| !! | GAGGAGTATCTGTTTAGGCA+TGG | + | chr6.1:2576222-2576241 | MS.gene82919:CDS | 45.0% |
| !! | TAGGTCTACAAGGGTATCCA+AGG | + | chr6.1:2572968-2572987 | MS.gene82919:intron | 45.0% |
| !! | TTGTGATGAAGAGAGTGTCC+GGG | + | chr6.1:2573295-2573314 | MS.gene82919:CDS | 45.0% |
| !!! | TTATTATTTTTACTTAAAAA+TGG | + | chr6.1:2574952-2574971 | MS.gene82919:intron | 5.0% |
| AACTTGCATCTAGCGAGGGA+GGG | + | chr6.1:2573894-2573913 | MS.gene82919:CDS | 50.0% | |
| AAGGCGACTTTACTAGCGTC+AGG | + | chr6.1:2574382-2574401 | MS.gene82919:CDS | 50.0% | |
| AATGAGCAGCTGGAACAACG+GGG | - | chr6.1:2575810-2575829 | None:intergenic | 50.0% | |
| AGCTAGCAACTCATTGCTCG+AGG | + | chr6.1:2575936-2575955 | MS.gene82919:CDS | 50.0% | |
| AGGCGACTTTACTAGCGTCA+GGG | + | chr6.1:2574383-2574402 | MS.gene82919:CDS | 50.0% | |
| AGGTCTGTATGTAGCAGGTG+AGG | + | chr6.1:2575879-2575898 | MS.gene82919:CDS | 50.0% | |
| ATGGGCGCATCGTTTGATCA+TGG | + | chr6.1:2573861-2573880 | MS.gene82919:CDS | 50.0% | |
| ATGTGTGGAGGAGTTCATGC+CGG | + | chr6.1:2575832-2575851 | MS.gene82919:CDS | 50.0% | |
| ATTTGTCTCTCCTTGGAGCC+CGG | - | chr6.1:2575854-2575873 | None:intergenic | 50.0% | |
| CAACTTCGAGCGCATATCGA+AGG | - | chr6.1:2573127-2573146 | None:intergenic | 50.0% | |
| CCACACATGTAATGAGCAGC+TGG | - | chr6.1:2575820-2575839 | None:intergenic | 50.0% | |
| CCAGCTGCTCATTACATGTG+TGG | + | chr6.1:2575817-2575836 | MS.gene82919:CDS | 50.0% | |
| CCTTCATCAGCTAACGCAGT+CGG | - | chr6.1:2575484-2575503 | None:intergenic | 50.0% | |
| CGACTGCGTTAGCTGATGAA+GGG | + | chr6.1:2575482-2575501 | MS.gene82919:CDS | 50.0% | |
| CTCTCACTTTCTTCGAGGTG+AGG | - | chr6.1:2576375-2576394 | None:intergenic | 50.0% | |
| CTCTTAAACCAACCGAGCCT+AGG | + | chr6.1:2575509-2575528 | MS.gene82919:CDS | 50.0% | |
| CTTCTTGCGACTACATCCCT+AGG | - | chr6.1:2575643-2575662 | None:intergenic | 50.0% | |
| GATTGAGCGCGCTCTATTGA+AGG | + | chr6.1:2573968-2573987 | MS.gene82919:CDS | 50.0% | |
| GCTGCTCATTACATGTGTGG+AGG | + | chr6.1:2575820-2575839 | MS.gene82919:CDS | 50.0% | |
| GCTTAGCCCTTCAGATTCTG+TGG | + | chr6.1:2573232-2573251 | MS.gene82919:CDS | 50.0% | |
| GTCATTGGGAGTGGAATTGC+TGG | + | chr6.1:2573101-2573120 | MS.gene82919:CDS | 50.0% | |
| TACCGGAGATGGGATTGCAA+TGG | + | chr6.1:2575200-2575219 | MS.gene82919:CDS | 50.0% | |
| TGCCATTGCAATCCCATCTC+CGG | - | chr6.1:2575205-2575224 | None:intergenic | 50.0% | |
| TGGGCGCATCGTTTGATCAT+GGG | + | chr6.1:2573862-2573881 | MS.gene82919:CDS | 50.0% | |
| TGGTTAGTAGTGCGCTTTCG+AGG | + | chr6.1:2576313-2576332 | MS.gene82919:CDS | 50.0% | |
| TTCCGATTCTTACGGAGTGG+AGG | - | chr6.1:2573026-2573045 | None:intergenic | 50.0% | |
| ! | AAAGAGGAGAGCTTGCTCCT+AGG | + | chr6.1:2575623-2575642 | MS.gene82919:CDS | 50.0% |
| ! | AAGAGGAGAGCTTGCTCCTA+GGG | + | chr6.1:2575624-2575643 | MS.gene82919:CDS | 50.0% |
| ! | GTAGCATGTACCGGTCTACA+TGG | + | chr6.1:2575901-2575920 | MS.gene82919:CDS | 50.0% |
| ! | TAACTTGCATCTAGCGAGGG+AGG | + | chr6.1:2573893-2573912 | MS.gene82919:CDS | 50.0% |
| ! | TCGGCTTGTGGCTAATGTCA+AGG | - | chr6.1:2575708-2575727 | None:intergenic | 50.0% |
| ! | TCTGAAGCTGTAAGGGGTGA+TGG | + | chr6.1:2575550-2575569 | MS.gene82919:CDS | 50.0% |
| !! | ATCAGTTCTCTGACTCGGTC+AGG | - | chr6.1:2573837-2573856 | None:intergenic | 50.0% |
| !! | ATGTTGCTGGTGTTGCAGGA+TGG | + | chr6.1:2574196-2574215 | MS.gene82919:intron | 50.0% |
| !! | CTAGGCTCGGTTGGTTTAAG+AGG | - | chr6.1:2575511-2575530 | None:intergenic | 50.0% |
| CACAGGTTGCTACCGGAGAT+GGG | + | chr6.1:2575190-2575209 | MS.gene82919:intron | 55.0% | |
| CATCAGCTAACGCAGTCGGA+TGG | - | chr6.1:2575480-2575499 | None:intergenic | 55.0% | |
| CCAAGTGAAAACGGCACCGT+AGG | - | chr6.1:2576054-2576073 | None:intergenic | 55.0% | |
| CCGACTGCGTTAGCTGATGA+AGG | + | chr6.1:2575481-2575500 | MS.gene82919:CDS | 55.0% | |
| GACTTTGCCGTCATTGGGAG+TGG | + | chr6.1:2573092-2573111 | MS.gene82919:CDS | 55.0% | |
| GCAGGTGAGGTAGCATGTAC+CGG | + | chr6.1:2575892-2575911 | MS.gene82919:CDS | 55.0% | |
| GCGACTTTACTAGCGTCAGG+GGG | + | chr6.1:2574385-2574404 | MS.gene82919:CDS | 55.0% | |
| GGCCTCCACTCCGTAAGAAT+CGG | + | chr6.1:2573021-2573040 | MS.gene82919:CDS | 55.0% | |
| GGCGACTTTACTAGCGTCAG+GGG | + | chr6.1:2574384-2574403 | MS.gene82919:CDS | 55.0% | |
| GGGCGCATCGTTTGATCATG+GGG | + | chr6.1:2573863-2573882 | MS.gene82919:CDS | 55.0% | |
| TCACAGGTTGCTACCGGAGA+TGG | + | chr6.1:2575189-2575208 | MS.gene82919:intron | 55.0% | |
| TGTGTGGAGGAGTTCATGCC+GGG | + | chr6.1:2575833-2575852 | MS.gene82919:CDS | 55.0% | |
| ! | AGAGTGTCCGGGTATGTTCC+TGG | + | chr6.1:2573306-2573325 | MS.gene82919:intron | 55.0% |
| ! | GAAGCTGTAAGGGGTGATGG+TGG | + | chr6.1:2575553-2575572 | MS.gene82919:CDS | 55.0% |
| ! | GCATTATCCCTAGGCTCGGT+TGG | - | chr6.1:2575520-2575539 | None:intergenic | 55.0% |
| !!! | CCTACGGTGCCGTTTTCACT+TGG | + | chr6.1:2576051-2576070 | MS.gene82919:CDS | 55.0% |
| GCAGCTGGAACAACGGGGAT+TGG | - | chr6.1:2575805-2575824 | None:intergenic | 60.0% | |
| TGCAATGTGCCCCTTCCAGC+AGG | - | chr6.1:2572704-2572723 | None:intergenic | 60.0% | |
| TTGCATCTAGCGAGGGAGGG+AGG | + | chr6.1:2573897-2573916 | MS.gene82919:CDS | 60.0% | |
| ! | TTACTAGCGTCAGGGGGTGC+TGG | + | chr6.1:2574391-2574410 | MS.gene82919:CDS | 60.0% |
| CTTTCGAGGCACGAGAGCCG+CGG | + | chr6.1:2576327-2576346 | MS.gene82919:CDS | 65.0% | |
| GGAGTTCATGCCGGGCTCCA+AGG | + | chr6.1:2575841-2575860 | MS.gene82919:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 2572686 | 2576500 | 2572686 | ID=MS.gene82919 |
| chr6.1 | mRNA | 2572686 | 2576500 | 2572686 | ID=MS.gene82919.t1;Parent=MS.gene82919 |
| chr6.1 | exon | 2572686 | 2572819 | 2572686 | ID=MS.gene82919.t1.exon1;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2572686 | 2572819 | 2572686 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| chr6.1 | exon | 2572971 | 2573316 | 2572971 | ID=MS.gene82919.t1.exon2;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2572971 | 2573316 | 2572971 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| chr6.1 | exon | 2573816 | 2574058 | 2573816 | ID=MS.gene82919.t1.exon3;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2573816 | 2574058 | 2573816 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| chr6.1 | exon | 2574214 | 2574270 | 2574214 | ID=MS.gene82919.t1.exon4;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2574214 | 2574270 | 2574214 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| chr6.1 | exon | 2574364 | 2574444 | 2574364 | ID=MS.gene82919.t1.exon5;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2574364 | 2574444 | 2574364 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| chr6.1 | exon | 2575195 | 2575239 | 2575195 | ID=MS.gene82919.t1.exon6;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2575195 | 2575239 | 2575195 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| chr6.1 | exon | 2575475 | 2576500 | 2575475 | ID=MS.gene82919.t1.exon7;Parent=MS.gene82919.t1 |
| chr6.1 | CDS | 2575475 | 2576500 | 2575475 | ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1 |
| Gene Sequence |
| Protein sequence |
