AlfalfaGEDB | MS.gene82919

M. sativa cultivar XinJiangDaYe / MS.gene82919

KEGG: K00278
GO: GO:0001716 GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008734 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009987 GO:0015922 GO:0016491 GO:0016638 GO:0016641 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00890.27 PF02910.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82919.t1	XP_003618293.2	95.2	645	22	1	1	636	38	682	0.00E+00	1231.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82919.t1	Q94AY1	73.7	604	144	5	41	630	39	641	3.0e-252	872.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82919.t1	G7KIS1	95.2	645	22	1	1	636	1	645	0.0e+00	1231.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049396	MS.gene82919	0.805139	1.54E-49	-1.69E-46
MS.gene052346	MS.gene82919	0.804382	2.22E-49	-1.69E-46
MS.gene052414	MS.gene82919	0.807547	4.79E-50	-1.69E-46
MS.gene052999	MS.gene82919	0.844714	6.37E-59	-1.69E-46
MS.gene053449	MS.gene82919	0.826297	2.93E-54	-1.69E-46
MS.gene053912	MS.gene82919	0.802792	4.74E-49	-1.69E-46
MS.gene055741	MS.gene82919	0.807233	5.59E-50	-1.69E-46
MS.gene055744	MS.gene82919	0.803744	3.01E-49	-1.69E-46
MS.gene055909	MS.gene82919	0.801955	7.05E-49	-1.69E-46
MS.gene055911	MS.gene82919	0.8012	1.01E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene010494	MS.gene82919	PPI
MS.gene047773	MS.gene82919	PPI
MS.gene065590	MS.gene82919	PPI
MS.gene56125	MS.gene82919	PPI
MS.gene59359	MS.gene82919	PPI
MS.gene82919	MS.gene43111	PPI
MS.gene82919	MS.gene061388	PPI
MS.gene92492	MS.gene82919	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82919.t1	MTR_6g007070	95.194	645	22	1	1	636	1	645	0.0	1273
MS.gene82919.t1	MTR_6g007070	95.532	470	12	1	176	636	1	470	0.0	933
MS.gene82919.t1	MTR_5g020050	32.781	543	285	18	109	601	67	579	4.48e-65	225
MS.gene82919.t1	MTR_5g020050	32.781	543	285	18	109	601	67	579	1.03e-64	224
MS.gene82919.t1	MTR_5g020050	32.554	513	268	17	137	601	4	486	1.38e-61	214

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82919.t1	AT5G14760	73.675	604	144	5	41	630	39	641	0.0	907
MS.gene82919.t1	AT5G66760	32.545	550	295	17	109	610	75	596	1.87e-66	229
MS.gene82919.t1	AT2G18450	32.051	546	297	15	109	607	73	591	5.43e-63	220

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Find 152 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAGAGCTTGCTCCT+AGG	0.504089	6.1:+2575623	MS.gene82919:CDS
AAATGCATTATCCCTAGGCT+CGG	0.603895	6.1:-2575521	None:intergenic
AAATTTATGGTCAAGACCTA+CGG	0.591700	6.1:+2576035	MS.gene82919:CDS
AACCGTTGCAGTGATAACAA+AGG	0.699415	6.1:+2573157	MS.gene82919:CDS
AACTTGCATCTAGCGAGGGA+GGG	0.596532	6.1:+2573894	MS.gene82919:CDS
AACTTGTATACCTGCTGGAA+GGG	0.531770	6.1:+2572691	MS.gene82919:CDS
AAGAGGAGAGCTTGCTCCTA+GGG	0.459707	6.1:+2575624	MS.gene82919:CDS
AAGATAAGCACCAGCTACAA+TGG	0.593610	6.1:-2573273	None:intergenic
AAGCAGCCTATGTATCAACA+AGG	0.691785	6.1:+2576459	MS.gene82919:CDS
AAGGCGACTTTACTAGCGTC+AGG	0.435341	6.1:+2574382	MS.gene82919:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTATGGTCAAGACCTA+CGG	+	chr6.1:2576035-2576054	MS.gene82919:CDS	30.0%
AAGCAGAAAAATAGGAGAAA+AGG	-	chr6.1:2574479-2574498	None:intergenic	30.0%
AATACAAAATGTGGCTATAG+TGG	+	chr6.1:2573665-2573684	MS.gene82919:intron	30.0%
AATACAAATTATGCTCAAGG+TGG	+	chr6.1:2573197-2573216	MS.gene82919:CDS	30.0%
ACGCGATTTAATACAAAATG+TGG	+	chr6.1:2573656-2573675	MS.gene82919:intron	30.0%
ACTTGAATCTTGAACTATTG+AGG	+	chr6.1:2574882-2574901	MS.gene82919:intron	30.0%
AGCTGCATTATAAAATCATC+TGG	-	chr6.1:2574554-2574573	None:intergenic	30.0%
ATACTTGTCAATGTACCTTT+AGG	+	chr6.1:2573538-2573557	MS.gene82919:intron	30.0%
ATGCCTTTGTATGATAAAAG+AGG	+	chr6.1:2575607-2575626	MS.gene82919:CDS	30.0%
ATTCCATTAGTGAAGGAATA+AGG	+	chr6.1:2575341-2575360	MS.gene82919:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	2572686	2576500	2572686	ID=MS.gene82919
chr6.1	mRNA	2572686	2576500	2572686	ID=MS.gene82919.t1;Parent=MS.gene82919
chr6.1	exon	2572686	2572819	2572686	ID=MS.gene82919.t1.exon1;Parent=MS.gene82919.t1
chr6.1	CDS	2572686	2572819	2572686	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1
chr6.1	exon	2572971	2573316	2572971	ID=MS.gene82919.t1.exon2;Parent=MS.gene82919.t1
chr6.1	CDS	2572971	2573316	2572971	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1
chr6.1	exon	2573816	2574058	2573816	ID=MS.gene82919.t1.exon3;Parent=MS.gene82919.t1
chr6.1	CDS	2573816	2574058	2573816	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1
chr6.1	exon	2574214	2574270	2574214	ID=MS.gene82919.t1.exon4;Parent=MS.gene82919.t1
chr6.1	CDS	2574214	2574270	2574214	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1
chr6.1	exon	2574364	2574444	2574364	ID=MS.gene82919.t1.exon5;Parent=MS.gene82919.t1
chr6.1	CDS	2574364	2574444	2574364	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1
chr6.1	exon	2575195	2575239	2575195	ID=MS.gene82919.t1.exon6;Parent=MS.gene82919.t1
chr6.1	CDS	2575195	2575239	2575195	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1
chr6.1	exon	2575475	2576500	2575475	ID=MS.gene82919.t1.exon7;Parent=MS.gene82919.t1
chr6.1	CDS	2575475	2576500	2575475	ID=cds.MS.gene82919.t1;Parent=MS.gene82919.t1

Gene Sequence

>MS.gene82919

ATGGCAACTTGTATACCTGCTGGAAGGGGCACATTGCATTACAGAGTGACAGACTACAAGGGACAAAGCTGTAGAAAAACTGCACGCGTTTCTGATGTGTCTATCAAAAGATACTTACAAAAAGATCTTTCATGGTAAACATTTTAAACCAGGAATCATATTAAGAGTTATGTTATACATCAATATCTGTTTTGATCGGAAAATTAATGAAAGTAGATCTTCCTTTTCGGGCTCATTCTTTGATAAGCTAATGATTTTCAGATGTTTTGGGGTGTATATTGTTAGGTCTACAAGGGTATCCAAGGTGCTGCAGATAAACAGATGTGAGTTTTCTAGGCCTCCACTCCGTAAGAATCGGAAACTCTTCATTTCCTCATGCAAAAAAGATGGTCCTACAAAATACTTCGACTTTGCCGTCATTGGGAGTGGAATTGCTGGCCTTCGATATGCGCTCGAAGTTGCAAAATATGGAACCGTTGCAGTGATAACAAAGGCTGAATCTCATGAATGTAATACAAATTATGCTCAAGGTGGTGTAAGTGCTGTGCTTAGCCCTTCAGATTCTGTGGAGAGTCACATGAAGGACACCATTGTAGCTGGTGCTTATCTTTGTGATGAAGAGAGTGTCCGGGTATGTTCCTGGCCTATTAGTTTTGTCATATAAGTCATTCCAAGAACTTTGTTCCTATCTGTATAAACAATGTAATTAAGTGCTTATCATATAAGTTTTACATGTATAAGCTATCACTGTGAAAAAAGATAAATAAAATCAAACTGCTTTAGTATAAGCTATAAGCTGTTTTCATAAGCTTTCATGGAGAGCTTATGGAGATAAGCTGAAACACAACTCATATACTTGTCAATGTACCTTTAGGAAATATGTGATGAACTACTAGTTTTCAATGTTGTCAATTAGCGGCTATAGCACCATAATGTAGCGGAATTTAGACAAACTGCGGTTGTTTGCGACACGCGATTTAATACAAAATGTGGCTATAGTGGCACTACGATGTTGTAGTGTGATAAAATTTGAACGAACCGTCATTTTCTGTGATCCGAAATTGGCAACACGGCTAGTTTCTATTACTACAGCTTTGACCATTGCATTAACTTTTGTACTTTTTTTCCAGGTTGTTTGTACTGAAGGACCTGACCGAGTCAGAGAACTGATTGCTATGGGCGCATCGTTTGATCATGGGGAAGATGGTAACTTGCATCTAGCGAGGGAGGGAGGTCATTCACATAACAGAATCGTTCATGCTGCTGATATGACAGGAAAAGAGATTGAGCGCGCTCTATTGAAGGCAGTTATCAACAATTCTAATATTTTTGTGTTTGAACACCATTTTGCTATAGATATTCTCACATGTCAGGTTTGTTCTCTTTTTCTTTTCTTTTGGTATTCCTAAGATTTTCTTAACACATAATGTTGATGGCATAAAGTTGTTTTGACATCTCAGAAAAATTTGATGAACATTTTGAATGTTTTGATGGATTTGCTAACTGAAACATGTTGCTGGTGTTGCAGGATGGATCTGATATAACCTGTCTTGGTGTTGACACACTTAATACTGAAACCCTAGAGGTGGGAAAAGCAATATGTGTGATTGTTTGAGACCTAAATTACTGCCATCATTGAATATATTTTCTAATCTTTAATCGTTTTTAGCTTTTTTAGGTGGTAAGATTTCTTTCAAAGGCGACTTTACTAGCGTCAGGGGGTGCTGGACATATTTATCCTAAAACTACGAATCCGTTGGTAATTCTCCTTTTCTAGAGTTTGAATGAATCCTTTTCTCCTATTTTTCTGCTTGGTTTATTTTCTATTTTTAGGTATTTAATAACACGTATCATGATAAAAAAATCCAGATGATTTTATAATGCAGCTTGATTGCATTCTGGAATTATTGAATAGTCATCATGTGGTCTAGTTTTCCCGTTGTAGTGTCGATACATGCTAGTATACATGCTAGTCGTACCTCGATTAGATACAAAACTAAATTCAATCGATACGAATCTCAAGTGAGTATCTACTTTGAACATAATCTCATCTTGTATTCTGAAACATTAAGATGAATCTCATTTTGCTATGATGAATTCTAATGAATCACTGCCTAAACTTAGTATAGCCAGCCACTTTTTTGTTGTTTTCAATTTTGTATTGCCGAACACTTTTATTTTGTCATTTGATTCATGACTTGAATCTTGAACTATTGAGGTTAGTAGATGATATATTAACTTATAATGCTTCTAATTTCTCTGTCACTTATTATTTTTACTTAAAAATGGCATATTTGTATTGGTCATTGTATCTTACAATTCATAGGCCTTTTGATTCGTGATTTGAATCTCGATTTGTTAACCATGCTTGATATGATCGTACTGAAAAATGAACCATCTCGTTCTGGTTGTTGCATGCTGAATATGTTGATTTGTATATGCTGTATCTCTTGTATTGCATGGCTAGTCTTTTTTGCATGTTAATTTGACATGCTTTTTACTATCACAGGTTGCTACCGGAGATGGGATTGCAATGGCATACCGAGCTCAAGCTGTGATTTCCAACATGGAGTAAGCTATAAATTGTTTTCATAACACACTAGATATGTCATAAGTTGTTTCCATAAACTCTCCCACACAATCTCACAAGTGCTTATTCCATTAGTGAAGGAATAAGGATACATGTGTCAAGTCTTGTAGTGTTTTTCATGATAAAGTATATCGTATTTCACGACCGTTGTGATTTTTTTCCTTTTTCTGAAAATCATTATTGGCGCAGGTTTGTGCAGTTCCATCCGACTGCGTTAGCTGATGAAGGGCTTCCTCTTAAACCAACCGAGCCTAGGGATAATGCATTTCTGATATCTGAAGCTGTAAGGGGTGATGGTGGCATCCTTTATAATTTAGCCATGGAAAGGTTTATGCCTTTGTATGATAAAAGAGGAGAGCTTGCTCCTAGGGATGTAGTCGCAAGAAGTATAGACGACCAACTTAAAAAGCGCAACGAAAAGTACGTGCTCCTTGACATTAGCCACAAGCCGAAGAATGAAATTCTCTCCCACTTTCCAAACATTGCTTCGACATGTCTTCAGTATGGTTTGGACATAACACGTCATCCAATCCCCGTTGTTCCAGCTGCTCATTACATGTGTGGAGGAGTTCATGCCGGGCTCCAAGGAGAGACAAATGTGAAAGGTCTGTATGTAGCAGGTGAGGTAGCATGTACCGGTCTACATGGAGCAAATAGACTAGCTAGCAACTCATTGCTCGAGGCACTCGTTTTTGCGCAAAGAGCTGTTCAGCCGTCAGTTGATCAAATGAAGAGCTCTAGCCTCGACCTTAATGCATCAAATTTATGGTCAAGACCTACGGTGCCGTTTTCACTTGGAAGTAATGCCAATGACAAAATTTTATCCGCGACCAAAGAATTGAGGAAAGAACTGCAATCTATCATGTTTAACTATGTGGGAATCGTGAGATCAACAACGTGGTTAGAGACAGCTGAGAGAAAAATCGGCAATCTTGAGGCAAAATGGGAGGAGTATCTGTTTAGGCATGGATGGAAACCAATAATGGTGGTGCCTGAGATATGTGAAATGAGAAACCTCTTTTGTTGTGCTAAGTTGGTGGTTAGTAGTGCGCTTTCGAGGCACGAGAGCCGCGGTTTACATTACACCATTGATTTTCCTCACCTCGAAGAAAGTGAGAGACTTCCAACAATTATTTTTCCAAGTTCACCTTTAAACAGTACATGGAGTTCTAGACAATTACAGAAGCAGCCTATGTATCAACAAGGCATCAATTTATGCAAATAA

Protein sequence

>MS.gene82919.t1

MATCIPAGRGTLHYRVTDYKGQSCRKTARVSDVSIKRYLQKDLSWSTRVSKVLQINRCEFSRPPLRKNRKLFISSCKKDGPTKYFDFAVIGSGIAGLRYALEVAKYGTVAVITKAESHECNTNYAQGGVSAVLSPSDSVESHMKDTIVAGAYLCDEESVRVVCTEGPDRVRELIAMGASFDHGEDGNLHLAREGGHSHNRIVHAADMTGKEIERALLKAVINNSNIFVFEHHFAIDILTCQDGSDITCLGVDTLNTETLEVVRFLSKATLLASGGAGHIYPKTTNPLVATGDGIAMAYRAQAFHPTALADEGLPLKPTEPRDNAFLISEAVRGDGGILYNLAMERFMPLYDKRGELAPRDVVARSIDDQLKKRNEKYVLLDISHKPKNEILSHFPNIASTCLQYGLDITRHPIPVVPAAHYMCGGVHAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFAQRAVQPSVDQMKSSSLDLNASNLWSRPTVPFSLGSNANDKILSATKELRKELQSIMFNYVGIVRSTTWLETAERKIGNLEAKWEEYLFRHGWKPIMVVPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPHLEESERLPTIIFPSSPLNSTWSSRQLQKQPMYQQGINLCK