AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065889


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065889.t1 MTR_2g436140 44.565 92 49 1 176 267 48 137 2.76e-17 85.1
MS.gene065889.t1 MTR_7g060170 48.780 82 40 1 354 435 6 85 1.09e-15 73.6
MS.gene065889.t1 MTR_7g074083 47.826 69 36 0 345 413 24 92 4.53e-15 72.4
MS.gene065889.t1 MTR_5g086820 53.704 54 25 0 360 413 39 92 1.18e-11 62.8
MS.gene065889.t1 MTR_8g086980 28.070 171 118 2 106 276 201 366 2.84e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 235 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCATCCAGTCACACTTTC+AGG 0.156242 4.2:+32018023 MS.gene065889:CDS
CACCTCCATATGTGGAGTTT+TGG 0.190669 4.2:-32017666 None:intergenic
AATTACGATTGGTCTTATTT+TGG 0.195049 4.2:-32018373 None:intergenic
CTATCTCCTGCATCCCGTTC+TGG 0.201986 4.2:-32018790 None:intergenic
GTCTGAAACTTGGAGAGTTT+TGG 0.224219 4.2:-32017807 None:intergenic
CAAAGAATCATCAAGCTAAA+AGG 0.225169 4.2:+32019728 MS.gene065889:CDS
CAAAGAATCATCAAGCTAAA+AGG 0.225169 4.2:+32020019 MS.gene065889:CDS
CAAAGCAACATCATGCTAAA+AGG 0.228413 4.2:+32019584 MS.gene065889:CDS
CTTTCAGCTTGATGATTCTT+TGG 0.237633 4.2:-32019871 None:intergenic
CAAAGCAGCGTCAAGCTAAA+AGG 0.248224 4.2:+32019515 MS.gene065889:CDS
ATCCTCTGTATGAGGAGTTT+TGG 0.284042 4.2:-32017765 None:intergenic
TGGGTTTCAACTAAACTATT+TGG 0.290355 4.2:+32017559 MS.gene065889:CDS
CTTATACGGCCCTGTGGTCT+AGG 0.301558 4.2:+32017854 MS.gene065889:CDS
GACGAAGACAATTTGTTAGA+TGG 0.302419 4.2:+32019769 MS.gene065889:CDS
TTGGCTAGAGATCTTTATAA+AGG 0.321950 4.2:-32018354 None:intergenic
GAATATTGGTGGAAGTTGTT+TGG 0.327898 4.2:+32018087 MS.gene065889:CDS
TGAGTTTGTTAGTGGAGTTC+AGG 0.329607 4.2:+32017409 MS.gene065889:CDS
CTTTCAGCTTGATGATGCTT+TGG 0.336556 4.2:-32019445 None:intergenic
GTGCTGCGGCAGCCTCTTTA+CGG 0.338605 4.2:-32018997 None:intergenic
TCCTCCATATGAGGAACTTT+GGG 0.343302 4.2:-32017704 None:intergenic
AATATTGGTGGAAGTTGTTT+GGG 0.347492 4.2:+32018088 MS.gene065889:CDS
AAAGAATCATCAAGCTAAAA+GGG 0.374571 4.2:+32019729 MS.gene065889:CDS
AAAGAATCATCAAGCTAAAA+GGG 0.374571 4.2:+32020020 MS.gene065889:CDS
GAAACAACATTATCAGCATT+TGG 0.377989 4.2:+32019081 MS.gene065889:CDS
CAATATTCCCTTACATCCTC+TGG 0.378318 4.2:-32018072 None:intergenic
TTCAACTAAACTATTTGGTC+TGG 0.381910 4.2:+32017564 MS.gene065889:CDS
TATCTCCTGCATCCCGTTCT+GGG 0.384815 4.2:-32018789 None:intergenic
CATTCTGCTTGTCTGAAACT+TGG 0.385118 4.2:-32017817 None:intergenic
TTCAGGGTCCTTTCTATCGC+TGG 0.387154 4.2:+32018040 MS.gene065889:CDS
AAGGAGGTACAAACACAAAA+TGG 0.387875 4.2:+32018758 MS.gene065889:CDS
ACGGTAATGACGACGGCAAC+GGG 0.394028 4.2:-32020091 None:intergenic
GAAAGAAACATCTAGCTCTA+AGG 0.395879 4.2:+32019299 MS.gene065889:CDS
AACGGGATGCAGGAGATAGA+TGG 0.396181 4.2:+32018794 MS.gene065889:CDS
TTCCTCCATATGAGGAACTT+TGG 0.401403 4.2:-32017705 None:intergenic
CAGAGGATGTAAGGGAATAT+TGG 0.403849 4.2:+32018073 MS.gene065889:CDS
GGAGGCTGCCGCAGCACGTC+AGG 0.404362 4.2:+32019024 MS.gene065889:CDS
TGATCACACCCACCACTATA+AGG 0.408691 4.2:-32018944 None:intergenic
AAGAGTCGAGGTCGGTGTTA+TGG 0.410049 4.2:+32018857 MS.gene065889:CDS
GTGAGACCCCAGAGGATGTA+AGG 0.413212 4.2:+32018064 MS.gene065889:CDS
AGAGGCTGCCGCAGCACATC+AGG 0.413600 4.2:+32019003 MS.gene065889:CDS
GTTTCGACTCAGCTGCCTCC+TGG 0.416729 4.2:-32019063 None:intergenic
GGAGGAATCAGAAGAGGAGG+AGG 0.416759 4.2:+32017721 MS.gene065889:CDS
ATAAAAGGAAGTCTGGCAAT+TGG 0.418430 4.2:+32018600 MS.gene065889:CDS
TGCTTTGGTAAGACCCCGTC+TGG 0.419898 4.2:-32019640 None:intergenic
TTAATGCAGGCTCAAGAACT+TGG 0.423789 4.2:+32018539 MS.gene065889:intron
GGAGGCAGCCACAGCACGCC+AGG 0.425194 4.2:+32019045 MS.gene065889:CDS
TGCTTTGGTAAAACCCCATC+TGG 0.426446 4.2:-32019931 None:intergenic
CGCAGGGGACGCCAATCAGC+AGG 0.428309 4.2:+32019187 MS.gene065889:CDS
ATGGTAAGGCCTCCCAGAAC+GGG 0.431393 4.2:+32018777 MS.gene065889:CDS
CTCTTTACGGACTGCATCAA+TGG 0.432826 4.2:-32018984 None:intergenic
GCTTGGGATCCTCGTGATCA+TGG 0.433534 4.2:+32018191 MS.gene065889:CDS
TTGAACTATGAGTTTGTTAG+TGG 0.434300 4.2:+32017401 MS.gene065889:CDS
AAAGAATCATCAAGCTGAAA+GGG 0.439093 4.2:+32019873 MS.gene065889:CDS
AAAGCAACATCATGCTAAAA+GGG 0.442573 4.2:+32019585 MS.gene065889:CDS
CTGATGGGAAGGTTCTTATA+CGG 0.442619 4.2:+32017840 MS.gene065889:CDS
AAAGCAGCGTCAAGCTAAAA+GGG 0.443246 4.2:+32019516 MS.gene065889:CDS
GCCACCCATAAAAGGAAGTC+TGG 0.448504 4.2:+32018593 MS.gene065889:CDS
TAAAAGGAAGTCTGGCAATT+GGG 0.451077 4.2:+32018601 MS.gene065889:CDS
ATCGAATAGCAGTAGACATA+TGG 0.451262 4.2:+32017631 MS.gene065889:CDS
AACTCCACATATGGAGGTGC+AGG 0.452320 4.2:+32017670 MS.gene065889:CDS
CTTGAGCAAAATATTTGTCT+AGG 0.452483 4.2:+32017602 MS.gene065889:CDS
GCTCTAGAGCGCCAATCAGC+AGG 0.461373 4.2:+32019139 MS.gene065889:CDS
GGAAGGGTCTTAATGTCCAT+TGG 0.462610 4.2:+32018321 MS.gene065889:CDS
TCTTCTGATTCCTCCATATG+AGG 0.463683 4.2:-32017713 None:intergenic
CTCTCAAAAGTGAGGAAGAA+GGG 0.464033 4.2:+32018266 MS.gene065889:CDS
GCAGCAGCAGGCGCCGCGCT+AGG 0.466466 4.2:-32017991 None:intergenic
TTCGCTGACTCAGGAGTCTC+GGG 0.469281 4.2:+32018919 MS.gene065889:CDS
ACGAAGACAATTTGTTAGAT+GGG 0.469400 4.2:+32019770 MS.gene065889:CDS
CATCCTCACTATGATAATGA+TGG 0.471233 4.2:+32019826 MS.gene065889:CDS
TCTTCCTGCACCTCCATATG+TGG 0.472883 4.2:-32017674 None:intergenic
GGATCCCAAAGTTCCTCATA+TGG 0.475777 4.2:+32017700 MS.gene065889:CDS
GGATCCCAAAACTCCACATA+TGG 0.476165 4.2:+32017661 MS.gene065889:CDS
AAAGCATCATCAAGCTGAAA+GGG 0.476885 4.2:+32019447 MS.gene065889:CDS
TGCAGATAATGGATCGTAGT+TGG 0.477132 4.2:+32017345 None:intergenic
GCGTGTTTAATCGCAGCAGC+AGG 0.479484 4.2:-32018003 None:intergenic
CAGACTTTGCTTTAAACCTC+CGG 0.479735 4.2:+32018885 MS.gene065889:CDS
GAAGGGTCTTAATGTCCATT+GGG 0.482860 4.2:+32018322 MS.gene065889:CDS
GTCTCACTCCAGCGATAGAA+AGG 0.483175 4.2:-32018048 None:intergenic
TAGTTCAAGCCTTTCCTATG+TGG 0.485535 4.2:-32017386 None:intergenic
AGTTCAGGAGTTTATTAAGA+AGG 0.488470 4.2:+32017424 MS.gene065889:CDS
CTATGATGATGAGGATTCGC+TGG 0.489767 4.2:+32019411 MS.gene065889:CDS
CTTCGCTGACTCAGGAGTCT+CGG 0.490441 4.2:+32018918 MS.gene065889:CDS
GGCCTCCCAGAACGGGATGC+AGG 0.492623 4.2:+32018784 MS.gene065889:CDS
AGAAGGGGACGAGACCTCAT+TGG 0.497085 4.2:+32018282 MS.gene065889:CDS
TCTTCTGAATCCTCTGTATG+AGG 0.497193 4.2:-32017773 None:intergenic
CAGTAGACATATGGAGGAGG+AGG 0.497751 4.2:+32017640 MS.gene065889:CDS
GAGCCTTGCGGCCTGTGGTG+TGG 0.498769 4.2:-32018415 None:intergenic
ATTGGATATGTGAAGAGGCT+TGG 0.499061 4.2:+32018300 MS.gene065889:CDS
GGAGGAGGAATCAGAAGAGG+AGG 0.501572 4.2:+32017736 MS.gene065889:CDS
CAAGTGTGAGTCAAGCTCGC+AGG 0.505729 4.2:+32019170 MS.gene065889:CDS
CAAGTGTGAGTCAAGCTCGC+AGG 0.505729 4.2:+32019218 MS.gene065889:CDS
GCCTTTACACGAATTACGAT+TGG 0.507806 4.2:-32018384 None:intergenic
GGCTGCCGCAGCACGTCAGG+AGG 0.508722 4.2:+32019027 MS.gene065889:CDS
AGCTGCCTCCTGGCGTGCTG+TGG 0.510431 4.2:-32019053 None:intergenic
GATATGTGAAGAGGCTTGGA+AGG 0.511244 4.2:+32018304 MS.gene065889:CDS
TCAGACAAGCAGAATGCTGA+TGG 0.511382 4.2:+32017824 MS.gene065889:CDS
ATCCTCACTATGATAATGAT+GGG 0.512412 4.2:+32019827 MS.gene065889:CDS
CAAAGAATCATCAAGCTGAA+AGG 0.512957 4.2:+32019872 MS.gene065889:CDS
AATATTCCCTTACATCCTCT+GGG 0.513122 4.2:-32018071 None:intergenic
AGAGGATTCAGAAGAGGAGG+AGG 0.520308 4.2:+32017781 MS.gene065889:CDS
ACCAATCGTAATTCGTGTAA+AGG 0.522365 4.2:+32018383 MS.gene065889:CDS
CTAAGAACTCGTCTAGTGAA+TGG 0.523574 4.2:-32019264 None:intergenic
TTGAGCAAAATATTTGTCTA+GGG 0.524348 4.2:+32017603 MS.gene065889:CDS
AAAACTCATTTGTACAAGAG+TGG 0.525014 4.2:+32017539 MS.gene065889:CDS
TGGTGTAACTTCGCTGACTC+AGG 0.525580 4.2:+32018910 MS.gene065889:CDS
GGAGGAATCAGAAGAGGAGG+AGG 0.525843 4.2:+32017739 MS.gene065889:CDS
ACGGGATGCAGGAGATAGAT+GGG 0.528666 4.2:+32018795 MS.gene065889:CDS
TAATGACGACGGCAACGGGC+TGG 0.528740 4.2:-32020087 None:intergenic
AAGTGTGAGTCAAGCTCGCA+GGG 0.528888 4.2:+32019171 MS.gene065889:CDS
AAGTGTGAGTCAAGCTCGCA+GGG 0.528888 4.2:+32019219 MS.gene065889:CDS
ATGATGACGATTTGCCAGAC+GGG 0.529560 4.2:+32019626 MS.gene065889:CDS
CAAAGCATCATCAAGCTGAA+AGG 0.530065 4.2:+32019446 MS.gene065889:CDS
CTAGATGTTTCTTTCTTCGA+CGG 0.530644 4.2:-32019291 None:intergenic
GCGAATCCTCGTCATTATCA+TGG 0.530875 4.2:-32019690 None:intergenic
ACATATGGAGGTGCAGGAAG+AGG 0.531104 4.2:+32017676 MS.gene065889:CDS
TAAGACCTCGTCTAGTGAAT+CGG 0.531398 4.2:-32020064 None:intergenic
TTATACGGCCCTGTGGTCTA+GGG 0.531997 4.2:+32017855 MS.gene065889:CDS
TTGTGAAAGCACCTGCTGAT+TGG 0.534635 4.2:-32019150 None:intergenic
AAACTCATTTGTACAAGAGT+GGG 0.538219 4.2:+32017540 MS.gene065889:CDS
CTTGGGATCCTCGTGATCAT+GGG 0.539317 4.2:+32018192 MS.gene065889:CDS
AGGATGTAAGGGAATATTGG+TGG 0.540950 4.2:+32018076 MS.gene065889:CDS
GAAACTTGAATTGTGGAAAG+AGG 0.542708 4.2:+32018823 MS.gene065889:CDS
TTGTGAAAGCACCTGCTGAT+TGG 0.546159 4.2:-32019198 None:intergenic
TACGGTAATGACGACGGCAA+CGG 0.549951 4.2:-32020092 None:intergenic
GGCGGAGCAGTCCACACCAC+AGG 0.552096 4.2:+32018404 MS.gene065889:CDS
TATAACTTACCCTAGACCAC+AGG 0.552243 4.2:-32017864 None:intergenic
TATTTGGTCTGGACTGAGCA+TGG 0.553267 4.2:+32017575 MS.gene065889:CDS
ACACACTTGCACATTGCACA+TGG 0.554386 4.2:-32017491 None:intergenic
CTCGGGAACCTTATAGTGGT+GGG 0.556218 4.2:+32018936 MS.gene065889:CDS
TCTCGGGAACCTTATAGTGG+TGG 0.557452 4.2:+32018935 MS.gene065889:CDS
GCTCTCAAAAGTGAGGAAGA+AGG 0.557493 4.2:+32018265 MS.gene065889:CDS
CATTGATGCAGTCCGTAAAG+AGG 0.559031 4.2:+32018985 MS.gene065889:CDS
TAATGCAGGCTCAAGAACTT+GGG 0.559518 4.2:+32018540 MS.gene065889:intron
ATCGTAGTTGGATGTATGAT+AGG 0.563873 4.2:+32017357 MS.gene065889:CDS
CGAAGACAATTTGTTAGATG+GGG 0.565203 4.2:+32019771 MS.gene065889:CDS
GGCTGCCGCAGCACATCAGG+AGG 0.566647 4.2:+32019006 MS.gene065889:CDS
GAGTCTCGGGAACCTTATAG+TGG 0.570097 4.2:+32018932 MS.gene065889:CDS
TAAAGGCTTCACCCTCCCAA+TGG 0.571271 4.2:-32018337 None:intergenic
ATGATGACGATTTGCCAGAT+GGG 0.572276 4.2:+32019917 MS.gene065889:CDS
GAATTGTGGAAAGAGGTTGC+TGG 0.573145 4.2:+32018830 MS.gene065889:CDS
TACAGAGGATTCAGAAGAGG+AGG 0.573871 4.2:+32017778 MS.gene065889:CDS
GGCAGCCACAGCACGCCAGG+AGG 0.574306 4.2:+32019048 MS.gene065889:CDS
AATGGTAAGGCCTCCCAGAA+CGG 0.574382 4.2:+32018776 MS.gene065889:CDS
TGATGAGGATTCACTAGATG+AGG 0.576767 4.2:+32019486 MS.gene065889:CDS
AAGGACCCTGAAAGTGTGAC+TGG 0.578783 4.2:-32018029 None:intergenic
ATCAAAACCAAACTCAACTA+CGG 0.579654 4.2:-32020110 None:intergenic
CAAGCAGAATGCTGATGGGA+AGG 0.582859 4.2:+32017829 MS.gene065889:CDS
GGTACAAACACAAAATGGTA+AGG 0.583099 4.2:+32018763 MS.gene065889:CDS
CCGCAAGGCTCATGTTGATG+TGG 0.585666 4.2:+32018427 MS.gene065889:CDS
GAATCGGTGTCATCATAAAG+AGG 0.589843 4.2:-32020048 None:intergenic
TGAGACCCCAGAGGATGTAA+GGG 0.590171 4.2:+32018065 MS.gene065889:CDS
GATGATGACGATTTGCCAGA+TGG 0.590733 4.2:+32019916 MS.gene065889:CDS
TCAAGAACTTGGGCGGTCTG+TGG 0.591187 4.2:+32018550 MS.gene065889:CDS
GCCATCCAGTCACACTTTCA+GGG 0.595008 4.2:+32018024 MS.gene065889:CDS
GGAGTTTATTAAGAAGGCCA+AGG 0.597232 4.2:+32017430 MS.gene065889:CDS
GGCAGCCTCCTGATGTGCTG+CGG 0.601804 4.2:-32019011 None:intergenic
TTGTAGGTGGGCTCCTAGCG+CGG 0.605332 4.2:+32017978 MS.gene065889:intron
TATGGAGGTGCAGGAAGAGG+AGG 0.606341 4.2:+32017679 MS.gene065889:CDS
AACATGAGCCTTGCGGCCTG+TGG 0.606679 4.2:-32018420 None:intergenic
ACAATATCACGATCGTCTGA+AGG 0.608845 4.2:+32018739 MS.gene065889:CDS
AGAGGAGGAGGAATCAGAAG+AGG 0.608992 4.2:+32017733 MS.gene065889:CDS
TATGGAGGAATCAGAAGAGG+AGG 0.610115 4.2:+32017718 MS.gene065889:CDS
GGCTGCCTCCTGACGTGCTG+CGG 0.610961 4.2:-32019032 None:intergenic
AGTCCACACCACAGGCCGCA+AGG 0.611297 4.2:+32018412 MS.gene065889:CDS
GGGCGACGAAACTTGAATTG+TGG 0.613873 4.2:+32018816 MS.gene065889:CDS
ACATCCTCGCTACGATGATG+AGG 0.614505 4.2:+32019471 MS.gene065889:CDS
ATATTGGTGGAAGTTGTTTG+GGG 0.616097 4.2:+32018089 MS.gene065889:CDS
TGTTGATGTGGCACTTAGCA+TGG 0.616336 4.2:+32018439 MS.gene065889:CDS
AGGATCAATCCACATAGGAA+AGG 0.616671 4.2:+32017377 MS.gene065889:CDS
TAGCAGTAGACATATGGAGG+AGG 0.616879 4.2:+32017637 MS.gene065889:CDS
ACATTATCACTATGATGATG+AGG 0.618914 4.2:+32019402 MS.gene065889:CDS
TTACATATGTTGTTTGAGAG+CGG 0.620785 4.2:-32018631 None:intergenic
TCCCAAAACTCCTCATACAG+AGG 0.621524 4.2:+32017763 MS.gene065889:CDS
CAGATATGCTCTCAAAAGTG+AGG 0.622705 4.2:+32018258 MS.gene065889:CDS
ACCTCATTGGATATGTGAAG+AGG 0.624423 4.2:+32018295 MS.gene065889:CDS
TCCTCGTCATTATCATGGTG+AGG 0.625583 4.2:-32019685 None:intergenic
GATGATGACGATTTGCCAGA+CGG 0.628419 4.2:+32019625 MS.gene065889:CDS
GGGTCTTAATGTCCATTGGG+AGG 0.630554 4.2:+32018325 MS.gene065889:CDS
GAATAGCAGTAGACATATGG+AGG 0.630715 4.2:+32017634 MS.gene065889:CDS
TCCTCATCATTATCATAGTG+AGG 0.630997 4.2:-32019976 None:intergenic
TTGATATACCCATGATCACG+AGG 0.631630 4.2:-32018200 None:intergenic
TGATGAGGATTCGCTACATG+AGG 0.633190 4.2:+32019990 MS.gene065889:CDS
GCCTCTTCACATATCCAATG+AGG 0.635189 4.2:-32018296 None:intergenic
TCATACAGAGGATTCAGAAG+AGG 0.636032 4.2:+32017775 MS.gene065889:CDS
TCCCAAAACTCCACATATGG+AGG 0.637455 4.2:+32017664 MS.gene065889:CDS
GGTCTTAATGTCCATTGGGA+GGG 0.637833 4.2:+32018326 MS.gene065889:CDS
TGATCATGCTATGCATCTAG+AGG 0.639265 4.2:+32018961 MS.gene065889:CDS
TCCCCATCATTATCATAGTG+AGG 0.639323 4.2:-32019829 None:intergenic
CAGACAAGCAGAATGCTGAT+GGG 0.640959 4.2:+32017825 MS.gene065889:CDS
AAGAATCATCAAGCTGAAAG+GGG 0.641028 4.2:+32019874 MS.gene065889:CDS
TCATATGGAGGAATCAGAAG+AGG 0.642617 4.2:+32017715 MS.gene065889:CDS
ATGATAGGATCAATCCACAT+AGG 0.644088 4.2:+32017372 MS.gene065889:CDS
TGATGGGGATTCGTTACATG+AGG 0.644762 4.2:+32019843 MS.gene065889:CDS
AAGCAACATCATGCTAAAAG+GGG 0.645171 4.2:+32019586 MS.gene065889:CDS
ACAACATTATCAGCATTTGG+AGG 0.645179 4.2:+32019084 MS.gene065889:CDS
AAGCATCATCAAGCTGAAAG+GGG 0.649585 4.2:+32019448 MS.gene065889:CDS
ACCCTGAAAGTGTGACTGGA+TGG 0.650411 4.2:-32018025 None:intergenic
CTCAACTACGGTAATGACGA+CGG 0.650510 4.2:-32020098 None:intergenic
TCCCAAAGTTCCTCATATGG+AGG 0.653546 4.2:+32017703 MS.gene065889:CDS
TCCTCACTATGATAATGATG+AGG 0.654946 4.2:+32019975 MS.gene065889:CDS
CCACATCAACATGAGCCTTG+CGG 0.654991 4.2:-32018427 None:intergenic
TGATGACGATTTGCCAGATG+GGG 0.655451 4.2:+32019918 MS.gene065889:CDS
AAAGTCTTTAACTCCAAGAG+AGG 0.657096 4.2:+32017514 MS.gene065889:CDS
ATATGTGAAGAGGCTTGGAA+GGG 0.657558 4.2:+32018305 MS.gene065889:CDS
TGCAGGCTCAAGAACTTGGG+CGG 0.659117 4.2:+32018543 MS.gene065889:intron
ATAACTTACCCTAGACCACA+GGG 0.660044 4.2:-32017863 None:intergenic
TTGTGGAAAGAGGTTGCTGG+TGG 0.660274 4.2:+32018833 MS.gene065889:CDS
AAGAATCATCAAGCTAAAAG+GGG 0.661347 4.2:+32019730 MS.gene065889:CDS
AAGAATCATCAAGCTAAAAG+GGG 0.661347 4.2:+32020021 MS.gene065889:CDS
TTTGCTTTAAACCTCCGGTG+TGG 0.663712 4.2:+32018890 MS.gene065889:CDS
TCGTCATCATCGTCATAGTG+AGG 0.664947 4.2:-32019613 None:intergenic
CTGGTGGAAAGAGTCGAGGT+CGG 0.666255 4.2:+32018849 MS.gene065889:CDS
TCTCAAAAGTGAGGAAGAAG+GGG 0.667382 4.2:+32018267 MS.gene065889:CDS
TGACGAGGATTCGCTACATG+AGG 0.668713 4.2:+32019699 MS.gene065889:CDS
AAGCAGCGTCAAGCTAAAAG+GGG 0.671751 4.2:+32019517 MS.gene065889:CDS
TTGTCTTCGTCATCATAGTG+AGG 0.672385 4.2:-32019757 None:intergenic
CGACGACGACTCTCTAGATG+AGG 0.674837 4.2:+32019555 MS.gene065889:CDS
TCCTCACTATGATAATGATG+GGG 0.674907 4.2:+32019828 MS.gene065889:CDS
CTCCTGCATCCCGTTCTGGG+AGG 0.677042 4.2:-32018786 None:intergenic
CGGGATGCAGGAGATAGATG+GGG 0.677483 4.2:+32018796 MS.gene065889:CDS
GTTGCTGGTGGAAAGAGTCG+AGG 0.681260 4.2:+32018845 MS.gene065889:CDS
AATCGTAATTCGTGTAAAGG+CGG 0.682791 4.2:+32018386 MS.gene065889:CDS
GAATGGTCATCATCATAGCG+AGG 0.683926 4.2:-32019247 None:intergenic
GCGAAGTTACACCACACCGG+AGG 0.685594 4.2:-32018901 None:intergenic
ATATCACGATCGTCTGAAGG+AGG 0.686760 4.2:+32018742 MS.gene065889:CDS
TCCTCACCATGATAATGACG+AGG 0.694396 4.2:+32019684 MS.gene065889:CDS
GAATCCTCATCATCGTAGCG+AGG 0.696997 4.2:-32019475 None:intergenic
AAGGTTCTTATACGGCCCTG+TGG 0.700616 4.2:+32017848 MS.gene065889:CDS
TGATGACGATTTGCCAGACG+GGG 0.703928 4.2:+32019627 MS.gene065889:CDS
TGACACCGATTCACTAGACG+AGG 0.704444 4.2:+32020059 MS.gene065889:CDS
TCAGCGAAGTTACACCACAC+CGG 0.719304 4.2:-32018904 None:intergenic
AGTGTGAGTCAAGCTCGCAG+GGG 0.725594 4.2:+32019172 MS.gene065889:CDS
AGTGTGAGTCAAGCTCGCAG+GGG 0.725594 4.2:+32019220 MS.gene065889:CDS
ATATTCCCTTACATCCTCTG+GGG 0.728189 4.2:-32018070 None:intergenic
TCGCTGGAGTGAGACCCCAG+AGG 0.762521 4.2:+32018056 MS.gene065889:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTTTTTTAATTTAATGC+AGG + chr4.2:32018526-32018545 MS.gene065889:intron 20.0%
! AAACAACATATGTAAGTTGT+TGG + chr4.2:32018639-32018658 MS.gene065889:intron 25.0%
! AAAGAATCATCAAGCTAAAA+GGG + chr4.2:32019729-32019748 MS.gene065889:CDS 25.0%
! CTCTTGAACAAAATGATATT+AGG + chr4.2:32018694-32018713 MS.gene065889:intron 25.0%
! TAACTAGTTATCGTTATGTA+GGG - chr4.2:32018148-32018167 None:intergenic 25.0%
! TTGAGCAAAATATTTGTCTA+GGG + chr4.2:32017603-32017622 MS.gene065889:CDS 25.0%
!!! AATTACGATTGGTCTTATTT+TGG - chr4.2:32018376-32018395 None:intergenic 25.0%
!!! ACTAGTTAGATTCCTTTTTT+AGG + chr4.2:32018160-32018179 MS.gene065889:intron 25.0%
!!! ATTTAGTTTGGACTTTTTGT+AGG + chr4.2:32017962-32017981 MS.gene065889:intron 25.0%
!!! TGATATTGTTTCTGGAAAAA+AGG - chr4.2:32018728-32018747 None:intergenic 25.0%
AAAAAGACGTTTCAAACAAG+AGG + chr4.2:32018221-32018240 MS.gene065889:CDS 30.0%
AAAACTCATTTGTACAAGAG+TGG + chr4.2:32017539-32017558 MS.gene065889:CDS 30.0%
AAACTCATTTGTACAAGAGT+GGG + chr4.2:32017540-32017559 MS.gene065889:CDS 30.0%
AAAGAATCATCAAGCTGAAA+GGG + chr4.2:32019873-32019892 MS.gene065889:CDS 30.0%
AAAGCAACATCATGCTAAAA+GGG + chr4.2:32019585-32019604 MS.gene065889:CDS 30.0%
AACTAGTTATCGTTATGTAG+GGG - chr4.2:32018147-32018166 None:intergenic 30.0%
AAGAATCATCAAGCTAAAAG+GGG + chr4.2:32019730-32019749 MS.gene065889:CDS 30.0%
AAGCAATCTTGTCCTAAAAA+AGG - chr4.2:32018175-32018194 None:intergenic 30.0%
AATATTGGTGGAAGTTGTTT+GGG + chr4.2:32018088-32018107 MS.gene065889:CDS 30.0%
AGTTCAGGAGTTTATTAAGA+AGG + chr4.2:32017424-32017443 MS.gene065889:CDS 30.0%
CAAAGAATCATCAAGCTAAA+AGG + chr4.2:32019728-32019747 MS.gene065889:CDS 30.0%
CTAACTAGTTATCGTTATGT+AGG - chr4.2:32018149-32018168 None:intergenic 30.0%
CTTGAGCAAAATATTTGTCT+AGG + chr4.2:32017602-32017621 MS.gene065889:CDS 30.0%
GAAACAACATTATCAGCATT+TGG + chr4.2:32019081-32019100 MS.gene065889:CDS 30.0%
TGGGTTTCAACTAAACTATT+TGG + chr4.2:32017559-32017578 MS.gene065889:CDS 30.0%
TTCAACTAAACTATTTGGTC+TGG + chr4.2:32017564-32017583 MS.gene065889:CDS 30.0%
TTGGCTAGAGATCTTTATAA+AGG - chr4.2:32018357-32018376 None:intergenic 30.0%
! ACATTATCACTATGATGATG+AGG + chr4.2:32019402-32019421 MS.gene065889:CDS 30.0%
! ATCCTCACTATGATAATGAT+GGG + chr4.2:32019827-32019846 MS.gene065889:CDS 30.0%
! TTACATATGTTGTTTGAGAG+CGG - chr4.2:32018634-32018653 None:intergenic 30.0%
! TTGATGGTTGACATTTAGTT+TGG + chr4.2:32017950-32017969 MS.gene065889:intron 30.0%
!! ACGAAGACAATTTGTTAGAT+GGG + chr4.2:32019770-32019789 MS.gene065889:CDS 30.0%
!! TTGAACTATGAGTTTGTTAG+TGG + chr4.2:32017401-32017420 MS.gene065889:CDS 30.0%
!!! CTTTTAGCTTGATGATTCTT+TGG - chr4.2:32019730-32019749 None:intergenic 30.0%
!!! TTTTTAGGACAAGATTGCTT+GGG + chr4.2:32018175-32018194 MS.gene065889:intron 30.0%
!!! TTTTTTAGGACAAGATTGCT+TGG + chr4.2:32018174-32018193 MS.gene065889:intron 30.0%
AAAGTCTTTAACTCCAAGAG+AGG + chr4.2:32017514-32017533 MS.gene065889:CDS 35.0%
AAGAATCATCAAGCTGAAAG+GGG + chr4.2:32019874-32019893 MS.gene065889:CDS 35.0%
AAGCAACATCATGCTAAAAG+GGG + chr4.2:32019586-32019605 MS.gene065889:CDS 35.0%
AATATTCCCTTACATCCTCT+GGG - chr4.2:32018074-32018093 None:intergenic 35.0%
AATCGTAATTCGTGTAAAGG+CGG + chr4.2:32018386-32018405 MS.gene065889:CDS 35.0%
ACAACATTATCAGCATTTGG+AGG + chr4.2:32019084-32019103 MS.gene065889:CDS 35.0%
ACCAATCGTAATTCGTGTAA+AGG + chr4.2:32018383-32018402 MS.gene065889:CDS 35.0%
ATAAAAGGAAGTCTGGCAAT+TGG + chr4.2:32018600-32018619 MS.gene065889:CDS 35.0%
ATATTGGTGGAAGTTGTTTG+GGG + chr4.2:32018089-32018108 MS.gene065889:CDS 35.0%
ATCGAATAGCAGTAGACATA+TGG + chr4.2:32017631-32017650 MS.gene065889:CDS 35.0%
ATCGTAGTTGGATGTATGAT+AGG + chr4.2:32017357-32017376 MS.gene065889:CDS 35.0%
ATGATAGGATCAATCCACAT+AGG + chr4.2:32017372-32017391 MS.gene065889:CDS 35.0%
CAAAGAATCATCAAGCTGAA+AGG + chr4.2:32019872-32019891 MS.gene065889:CDS 35.0%
CAAAGCAACATCATGCTAAA+AGG + chr4.2:32019584-32019603 MS.gene065889:CDS 35.0%
CTAGATGTTTCTTTCTTCGA+CGG - chr4.2:32019294-32019313 None:intergenic 35.0%
GAAACTTGAATTGTGGAAAG+AGG + chr4.2:32018823-32018842 MS.gene065889:CDS 35.0%
GAATATTGGTGGAAGTTGTT+TGG + chr4.2:32018087-32018106 MS.gene065889:CDS 35.0%
GGTACAAACACAAAATGGTA+AGG + chr4.2:32018763-32018782 MS.gene065889:CDS 35.0%
TAAAAGGAAGTCTGGCAATT+GGG + chr4.2:32018601-32018620 MS.gene065889:CDS 35.0%
TCATCATCATCATCATAGTG+AGG - chr4.2:32019904-32019923 None:intergenic 35.0%
TCCTCATCATTATCATAGTG+AGG - chr4.2:32019979-32019998 None:intergenic 35.0%
TTTCTCTCAGACAAAAAGCA+GGG - chr4.2:32017461-32017480 None:intergenic 35.0%
! AAAGCATCATCAAGCTGAAA+GGG + chr4.2:32019447-32019466 MS.gene065889:CDS 35.0%
! AAATGAGTTTTCACCTCTCT+TGG - chr4.2:32017530-32017549 None:intergenic 35.0%
! AAGGAGGTACAAACACAAAA+TGG + chr4.2:32018758-32018777 MS.gene065889:CDS 35.0%
! AATTGCCAGACTTCCTTTTA+TGG - chr4.2:32018601-32018620 None:intergenic 35.0%
! AGTTTGGACTTTTTGTAGGT+GGG + chr4.2:32017966-32017985 MS.gene065889:intron 35.0%
! ATTGCCAGACTTCCTTTTAT+GGG - chr4.2:32018600-32018619 None:intergenic 35.0%
! CATCCTCACTATGATAATGA+TGG + chr4.2:32019826-32019845 MS.gene065889:CDS 35.0%
! CTTTCAGCTTGATGATTCTT+TGG - chr4.2:32019874-32019893 None:intergenic 35.0%
! TAGTTTGGACTTTTTGTAGG+TGG + chr4.2:32017965-32017984 MS.gene065889:intron 35.0%
! TCCTCACTATGATAATGATG+AGG + chr4.2:32019828-32019847 MS.gene065889:CDS 35.0%
! TCCTCACTATGATAATGATG+GGG + chr4.2:32019828-32019847 MS.gene065889:CDS 35.0%
! TCTTGTGAGCTTGATGTTTT+TGG - chr4.2:32019381-32019400 None:intergenic 35.0%
!! CGAAGACAATTTGTTAGATG+GGG + chr4.2:32019771-32019790 MS.gene065889:CDS 35.0%
!! CTTTTAGCATGATGTTGCTT+TGG - chr4.2:32019586-32019605 None:intergenic 35.0%
!! CTTTTGAGAGCATATCTGAA+AGG - chr4.2:32018256-32018275 None:intergenic 35.0%
!! GAAAGAAACATCTAGCTCTA+AGG + chr4.2:32019299-32019318 MS.gene065889:CDS 35.0%
!! GACGAAGACAATTTGTTAGA+TGG + chr4.2:32019769-32019788 MS.gene065889:CDS 35.0%
!! TCTGAAACTTGGAGAGTTTT+GGG - chr4.2:32017809-32017828 None:intergenic 35.0%
!! TCTTTTTAGCCACCCATAAA+AGG + chr4.2:32018585-32018604 MS.gene065889:CDS 35.0%
!!! TTTTTAGCTTGACGTTGCTT+TGG - chr4.2:32019949-32019968 None:intergenic 35.0%
!!! TTTTTAGCTTGAGGTTGCTT+TGG - chr4.2:32019802-32019821 None:intergenic 35.0%
!!! TTTTTAGCTTGTCGTTGCTT+TGG - chr4.2:32019658-32019677 None:intergenic 35.0%
AAAGCAGCGTCAAGCTAAAA+GGG + chr4.2:32019516-32019535 MS.gene065889:CDS 40.0%
AAGCATCATCAAGCTGAAAG+GGG + chr4.2:32019448-32019467 MS.gene065889:CDS 40.0%
ACAATATCACGATCGTCTGA+AGG + chr4.2:32018739-32018758 MS.gene065889:CDS 40.0%
ACCTCATTGGATATGTGAAG+AGG + chr4.2:32018295-32018314 MS.gene065889:CDS 40.0%
AGCAACGACAAGCTAAAAAG+CGG + chr4.2:32019659-32019678 MS.gene065889:CDS 40.0%
AGGATCAATCCACATAGGAA+AGG + chr4.2:32017377-32017396 MS.gene065889:CDS 40.0%
AGGATGTAAGGGAATATTGG+TGG + chr4.2:32018076-32018095 MS.gene065889:CDS 40.0%
ATAACTTACCCTAGACCACA+GGG - chr4.2:32017866-32017885 None:intergenic 40.0%
ATATGTGAAGAGGCTTGGAA+GGG + chr4.2:32018305-32018324 MS.gene065889:CDS 40.0%
ATATTCCCTTACATCCTCTG+GGG - chr4.2:32018073-32018092 None:intergenic 40.0%
ATTGGATATGTGAAGAGGCT+TGG + chr4.2:32018300-32018319 MS.gene065889:CDS 40.0%
CAATATTCCCTTACATCCTC+TGG - chr4.2:32018075-32018094 None:intergenic 40.0%
CAGAGGATGTAAGGGAATAT+TGG + chr4.2:32018073-32018092 MS.gene065889:CDS 40.0%
CAGATATGCTCTCAAAAGTG+AGG + chr4.2:32018258-32018277 MS.gene065889:CDS 40.0%
CTAAGAACTCGTCTAGTGAA+TGG - chr4.2:32019267-32019286 None:intergenic 40.0%
CTCTCAAAAGTGAGGAAGAA+GGG + chr4.2:32018266-32018285 MS.gene065889:CDS 40.0%
CTGATGGGAAGGTTCTTATA+CGG + chr4.2:32017840-32017859 MS.gene065889:CDS 40.0%
CTTTCTCTCAGACAAAAAGC+AGG - chr4.2:32017462-32017481 None:intergenic 40.0%
GAAGGGTCTTAATGTCCATT+GGG + chr4.2:32018322-32018341 MS.gene065889:CDS 40.0%
GAATAGCAGTAGACATATGG+AGG + chr4.2:32017634-32017653 MS.gene065889:CDS 40.0%
GACGATCGTGATATTGTTTC+TGG - chr4.2:32018736-32018755 None:intergenic 40.0%
GCCTTTACACGAATTACGAT+TGG - chr4.2:32018387-32018406 None:intergenic 40.0%
GGAGTTTATTAAGAAGGCCA+AGG + chr4.2:32017430-32017449 MS.gene065889:CDS 40.0%
TAAGACCTCGTCTAGTGAAT+CGG - chr4.2:32020067-32020086 None:intergenic 40.0%
TAATGCAGGCTCAAGAACTT+GGG + chr4.2:32018540-32018559 MS.gene065889:intron 40.0%
TAGTTCAAGCCTTTCCTATG+TGG - chr4.2:32017389-32017408 None:intergenic 40.0%
TATAACTTACCCTAGACCAC+AGG - chr4.2:32017867-32017886 None:intergenic 40.0%
TCATACAGAGGATTCAGAAG+AGG + chr4.2:32017775-32017794 MS.gene065889:CDS 40.0%
TCATATGGAGGAATCAGAAG+AGG + chr4.2:32017715-32017734 MS.gene065889:CDS 40.0%
TCCCCATCATTATCATAGTG+AGG - chr4.2:32019832-32019851 None:intergenic 40.0%
TCCTCCATATGAGGAACTTT+GGG - chr4.2:32017707-32017726 None:intergenic 40.0%
TCTCAAAAGTGAGGAAGAAG+GGG + chr4.2:32018267-32018286 MS.gene065889:CDS 40.0%
TCTTCTGAATCCTCTGTATG+AGG - chr4.2:32017776-32017795 None:intergenic 40.0%
TCTTCTGATTCCTCCATATG+AGG - chr4.2:32017716-32017735 None:intergenic 40.0%
TGATCATGCTATGCATCTAG+AGG + chr4.2:32018961-32018980 MS.gene065889:CDS 40.0%
TGATGAGGATTCACTAGATG+AGG + chr4.2:32019486-32019505 MS.gene065889:CDS 40.0%
TTAATGCAGGCTCAAGAACT+TGG + chr4.2:32018539-32018558 MS.gene065889:intron 40.0%
TTCCTCCATATGAGGAACTT+TGG - chr4.2:32017708-32017727 None:intergenic 40.0%
TTGATATACCCATGATCACG+AGG - chr4.2:32018203-32018222 None:intergenic 40.0%
TTGTCTTCGTCATCATAGTG+AGG - chr4.2:32019760-32019779 None:intergenic 40.0%
! ACCTCCATATGTGGAGTTTT+GGG - chr4.2:32017668-32017687 None:intergenic 40.0%
! ATCCTCTGTATGAGGAGTTT+TGG - chr4.2:32017768-32017787 None:intergenic 40.0%
! ATGATGACGATTTGCCAGAT+GGG + chr4.2:32019917-32019936 MS.gene065889:CDS 40.0%
! CAAAGCATCATCAAGCTGAA+AGG + chr4.2:32019446-32019465 MS.gene065889:CDS 40.0%
! CAGACTTTGCTTTAAACCTC+CGG + chr4.2:32018885-32018904 MS.gene065889:CDS 40.0%
! CATTCTGCTTGTCTGAAACT+TGG - chr4.2:32017820-32017839 None:intergenic 40.0%
! TCCTCTGTATGAGGAGTTTT+GGG - chr4.2:32017767-32017786 None:intergenic 40.0%
!! CTTTCAGCTTGATGATGCTT+TGG - chr4.2:32019448-32019467 None:intergenic 40.0%
!! GAATCGGTGTCATCATAAAG+AGG - chr4.2:32020051-32020070 None:intergenic 40.0%
!! GTCTGAAACTTGGAGAGTTT+TGG - chr4.2:32017810-32017829 None:intergenic 40.0%
!! TGAGTTTGTTAGTGGAGTTC+AGG + chr4.2:32017409-32017428 MS.gene065889:CDS 40.0%
AAGCAGCGTCAAGCTAAAAG+GGG + chr4.2:32019517-32019536 MS.gene065889:CDS 45.0%
ACACACTTGCACATTGCACA+TGG - chr4.2:32017494-32017513 None:intergenic 45.0%
ATATCACGATCGTCTGAAGG+AGG + chr4.2:32018742-32018761 MS.gene065889:CDS 45.0%
CAAAAAGCAGGGTTGTTCCT+TGG - chr4.2:32017450-32017469 None:intergenic 45.0%
CAAAGCAGCGTCAAGCTAAA+AGG + chr4.2:32019515-32019534 MS.gene065889:CDS 45.0%
CAGACAAGCAGAATGCTGAT+GGG + chr4.2:32017825-32017844 MS.gene065889:CDS 45.0%
CATTGATGCAGTCCGTAAAG+AGG + chr4.2:32018985-32019004 MS.gene065889:CDS 45.0%
GAATGGTCATCATCATAGCG+AGG - chr4.2:32019250-32019269 None:intergenic 45.0%
GAATTGTGGAAAGAGGTTGC+TGG + chr4.2:32018830-32018849 MS.gene065889:CDS 45.0%
GATATGTGAAGAGGCTTGGA+AGG + chr4.2:32018304-32018323 MS.gene065889:CDS 45.0%
GCCTCTTCACATATCCAATG+AGG - chr4.2:32018299-32018318 None:intergenic 45.0%
GCGAATCCTCGTCATTATCA+TGG - chr4.2:32019693-32019712 None:intergenic 45.0%
GCTCTCAAAAGTGAGGAAGA+AGG + chr4.2:32018265-32018284 MS.gene065889:CDS 45.0%
GGAAGGGTCTTAATGTCCAT+TGG + chr4.2:32018321-32018340 MS.gene065889:CDS 45.0%
GGATCCCAAAACTCCACATA+TGG + chr4.2:32017661-32017680 MS.gene065889:CDS 45.0%
GGATCCCAAAGTTCCTCATA+TGG + chr4.2:32017700-32017719 MS.gene065889:CDS 45.0%
GGTCTTAATGTCCATTGGGA+GGG + chr4.2:32018326-32018345 MS.gene065889:CDS 45.0%
GGTGGCTAAAAAGAGCTCAT+CGG - chr4.2:32018579-32018598 None:intergenic 45.0%
GTGGCTAAAAAGAGCTCATC+GGG - chr4.2:32018578-32018597 None:intergenic 45.0%
TACAGAGGATTCAGAAGAGG+AGG + chr4.2:32017778-32017797 MS.gene065889:CDS 45.0%
TAGCAGTAGACATATGGAGG+AGG + chr4.2:32017637-32017656 MS.gene065889:CDS 45.0%
TATGGAGGAATCAGAAGAGG+AGG + chr4.2:32017718-32017737 MS.gene065889:CDS 45.0%
TATTTGGTCTGGACTGAGCA+TGG + chr4.2:32017575-32017594 MS.gene065889:CDS 45.0%
TCAGACAAGCAGAATGCTGA+TGG + chr4.2:32017824-32017843 MS.gene065889:CDS 45.0%
TCCCAAAACTCCACATATGG+AGG + chr4.2:32017664-32017683 MS.gene065889:CDS 45.0%
TCCCAAAACTCCTCATACAG+AGG + chr4.2:32017763-32017782 MS.gene065889:CDS 45.0%
TCCCAAAGTTCCTCATATGG+AGG + chr4.2:32017703-32017722 MS.gene065889:CDS 45.0%
TCCTCGTCATTATCATGGTG+AGG - chr4.2:32019688-32019707 None:intergenic 45.0%
TCGTCATCATCGTCATAGTG+AGG - chr4.2:32019616-32019635 None:intergenic 45.0%
TGATCACACCCACCACTATA+AGG - chr4.2:32018947-32018966 None:intergenic 45.0%
TGATGAGGATTCGCTACATG+AGG + chr4.2:32019990-32020009 MS.gene065889:CDS 45.0%
TGATGGGGATTCGTTACATG+AGG + chr4.2:32019843-32019862 MS.gene065889:CDS 45.0%
TGCTTTGGTAAAACCCCATC+TGG - chr4.2:32019787-32019806 None:intergenic 45.0%
TGTTGATGTGGCACTTAGCA+TGG + chr4.2:32018439-32018458 MS.gene065889:CDS 45.0%
! ATGATGACGATTTGCCAGAC+GGG + chr4.2:32019626-32019645 MS.gene065889:CDS 45.0%
! CACCTCCATATGTGGAGTTT+TGG - chr4.2:32017669-32017688 None:intergenic 45.0%
! CTATGATGATGAGGATTCGC+TGG + chr4.2:32019411-32019430 MS.gene065889:CDS 45.0%
! CTCTTTACGGACTGCATCAA+TGG - chr4.2:32018987-32019006 None:intergenic 45.0%
! GATGATGACGATTTGCCAGA+CGG + chr4.2:32019625-32019644 MS.gene065889:CDS 45.0%
! GATGATGACGATTTGCCAGA+TGG + chr4.2:32019625-32019644 MS.gene065889:CDS 45.0%
! TCCTCACCATGATAATGACG+AGG + chr4.2:32019684-32019703 MS.gene065889:CDS 45.0%
! TGATGACGATTTGCCAGATG+GGG + chr4.2:32019918-32019937 MS.gene065889:CDS 45.0%
! TTTGCTTTAAACCTCCGGTG+TGG + chr4.2:32018890-32018909 MS.gene065889:CDS 45.0%
!! TTGTGAAAGCACCTGCTGAT+TGG - chr4.2:32019153-32019172 None:intergenic 45.0%
!!! CTTTTAGCTTGACGCTGCTT+TGG - chr4.2:32019517-32019536 None:intergenic 45.0%
!!! GAGCTTGATGTTTTTGGCGA+CGG - chr4.2:32019375-32019394 None:intergenic 45.0%
!!! GATGTTTTTGGCGACGGTTT+GGG - chr4.2:32019369-32019388 None:intergenic 45.0%
!!! GGATGTCGCTTTTTAGCTTG+AGG - chr4.2:32019811-32019830 None:intergenic 45.0%
!!! TGATGTTTTTGGCGACGGTT+TGG - chr4.2:32019370-32019389 None:intergenic 45.0%
!! ATATGATATAAAAAATATAA+GGG - chr4.2:32018665-32018684 None:intergenic 5.0%
!! TATATGATATAAAAAATATA+AGG - chr4.2:32018666-32018685 None:intergenic 5.0%
AACGGGATGCAGGAGATAGA+TGG + chr4.2:32018794-32018813 MS.gene065889:CDS 50.0%
AAGGTTCTTATACGGCCCTG+TGG + chr4.2:32017848-32017867 MS.gene065889:CDS 50.0%
AAGTGTGAGTCAAGCTCGCA+GGG + chr4.2:32019171-32019190 MS.gene065889:CDS 50.0%
AATGGTAAGGCCTCCCAGAA+CGG + chr4.2:32018776-32018795 MS.gene065889:CDS 50.0%
ACATCCTCGCTACGATGATG+AGG + chr4.2:32019471-32019490 MS.gene065889:CDS 50.0%
ACGGGATGCAGGAGATAGAT+GGG + chr4.2:32018795-32018814 MS.gene065889:CDS 50.0%
AGAGGAGGAGGAATCAGAAG+AGG + chr4.2:32017733-32017752 MS.gene065889:CDS 50.0%
AGAGGATTCAGAAGAGGAGG+AGG + chr4.2:32017781-32017800 MS.gene065889:CDS 50.0%
CAAGCAGAATGCTGATGGGA+AGG + chr4.2:32017829-32017848 MS.gene065889:CDS 50.0%
CAGTAGACATATGGAGGAGG+AGG + chr4.2:32017640-32017659 MS.gene065889:CDS 50.0%
CCACATCAACATGAGCCTTG+CGG - chr4.2:32018430-32018449 None:intergenic 50.0%
CTCGGGAACCTTATAGTGGT+GGG + chr4.2:32018936-32018955 MS.gene065889:CDS 50.0%
CTTGGGATCCTCGTGATCAT+GGG + chr4.2:32018192-32018211 MS.gene065889:CDS 50.0%
GAATCCTCATCATCGTAGCG+AGG - chr4.2:32019478-32019497 None:intergenic 50.0%
GAGTCTCGGGAACCTTATAG+TGG + chr4.2:32018932-32018951 MS.gene065889:CDS 50.0%
GCCACCCATAAAAGGAAGTC+TGG + chr4.2:32018593-32018612 MS.gene065889:CDS 50.0%
GCCATCCAGTCACACTTTCA+GGG + chr4.2:32018024-32018043 MS.gene065889:CDS 50.0%
GGGCGACGAAACTTGAATTG+TGG + chr4.2:32018816-32018835 MS.gene065889:CDS 50.0%
GGGTCTTAATGTCCATTGGG+AGG + chr4.2:32018325-32018344 MS.gene065889:CDS 50.0%
GTCTCACTCCAGCGATAGAA+AGG - chr4.2:32018051-32018070 None:intergenic 50.0%
TAAAGGCTTCACCCTCCCAA+TGG - chr4.2:32018340-32018359 None:intergenic 50.0%
TACGGTAATGACGACGGCAA+CGG - chr4.2:32020095-32020114 None:intergenic 50.0%
TATCTCCTGCATCCCGTTCT+GGG - chr4.2:32018792-32018811 None:intergenic 50.0%
TCAGCGAAGTTACACCACAC+CGG - chr4.2:32018907-32018926 None:intergenic 50.0%
TCTCGGGAACCTTATAGTGG+TGG + chr4.2:32018935-32018954 MS.gene065889:CDS 50.0%
TCTTCCTGCACCTCCATATG+TGG - chr4.2:32017677-32017696 None:intergenic 50.0%
TGACGAGGATTCGCTACATG+AGG + chr4.2:32019699-32019718 MS.gene065889:CDS 50.0%
TGAGACCCCAGAGGATGTAA+GGG + chr4.2:32018065-32018084 MS.gene065889:CDS 50.0%
TGCGTGTGTGTGTGTGTTGA+TGG + chr4.2:32017934-32017953 MS.gene065889:intron 50.0%
TTATACGGCCCTGTGGTCTA+GGG + chr4.2:32017855-32017874 MS.gene065889:CDS 50.0%
TTCAGGGTCCTTTCTATCGC+TGG + chr4.2:32018040-32018059 MS.gene065889:CDS 50.0%
TTGTGGAAAGAGGTTGCTGG+TGG + chr4.2:32018833-32018852 MS.gene065889:CDS 50.0%
! AACTCCACATATGGAGGTGC+AGG + chr4.2:32017670-32017689 MS.gene065889:CDS 50.0%
! AAGGACCCTGAAAGTGTGAC+TGG - chr4.2:32018032-32018051 None:intergenic 50.0%
! ACATATGGAGGTGCAGGAAG+AGG + chr4.2:32017676-32017695 MS.gene065889:CDS 50.0%
! ACCCTGAAAGTGTGACTGGA+TGG - chr4.2:32018028-32018047 None:intergenic 50.0%
! GCCAGACTTCCTTTTATGGG+TGG - chr4.2:32018597-32018616 None:intergenic 50.0%
! TGATGACGATTTGCCAGACG+GGG + chr4.2:32019627-32019646 MS.gene065889:CDS 50.0%
!! AAGAGTCGAGGTCGGTGTTA+TGG + chr4.2:32018857-32018876 MS.gene065889:CDS 50.0%
!! TGACACCGATTCACTAGACG+AGG + chr4.2:32020059-32020078 MS.gene065889:CDS 50.0%
!! TGGTGTAACTTCGCTGACTC+AGG + chr4.2:32018910-32018929 MS.gene065889:CDS 50.0%
ACGGTAATGACGACGGCAAC+GGG - chr4.2:32020094-32020113 None:intergenic 55.0%
AGAAGGGGACGAGACCTCAT+TGG + chr4.2:32018282-32018301 MS.gene065889:CDS 55.0%
AGTGTGAGTCAAGCTCGCAG+GGG + chr4.2:32019172-32019191 MS.gene065889:CDS 55.0%
ATGGTAAGGCCTCCCAGAAC+GGG + chr4.2:32018777-32018796 MS.gene065889:CDS 55.0%
CAAGTGTGAGTCAAGCTCGC+AGG + chr4.2:32019170-32019189 MS.gene065889:CDS 55.0%
CCGCAAGGCTCATGTTGATG+TGG + chr4.2:32018427-32018446 MS.gene065889:CDS 55.0%
CGACGACGACTCTCTAGATG+AGG + chr4.2:32019555-32019574 MS.gene065889:CDS 55.0%
CGCCATCCAGTCACACTTTC+AGG + chr4.2:32018023-32018042 MS.gene065889:CDS 55.0%
CGGGATGCAGGAGATAGATG+GGG + chr4.2:32018796-32018815 MS.gene065889:CDS 55.0%
CTATCTCCTGCATCCCGTTC+TGG - chr4.2:32018793-32018812 None:intergenic 55.0%
CTGGTGGAAAGAGTCGAGGT+CGG + chr4.2:32018849-32018868 MS.gene065889:CDS 55.0%
CTTATACGGCCCTGTGGTCT+AGG + chr4.2:32017854-32017873 MS.gene065889:CDS 55.0%
GCGTGTTTAATCGCAGCAGC+AGG - chr4.2:32018006-32018025 None:intergenic 55.0%
GCTTGGGATCCTCGTGATCA+TGG + chr4.2:32018191-32018210 MS.gene065889:CDS 55.0%
GGAGGAATCAGAAGAGGAGG+AGG + chr4.2:32017721-32017740 MS.gene065889:CDS 55.0%
GGAGGAGGAATCAGAAGAGG+AGG + chr4.2:32017736-32017755 MS.gene065889:CDS 55.0%
GTGAGACCCCAGAGGATGTA+AGG + chr4.2:32018064-32018083 MS.gene065889:CDS 55.0%
GTTGCTGGTGGAAAGAGTCG+AGG + chr4.2:32018845-32018864 MS.gene065889:CDS 55.0%
TCAAGAACTTGGGCGGTCTG+TGG + chr4.2:32018550-32018569 MS.gene065889:CDS 55.0%
TGCAGGCTCAAGAACTTGGG+CGG + chr4.2:32018543-32018562 MS.gene065889:intron 55.0%
TGCTTTGGTAAGACCCCGTC+TGG - chr4.2:32019643-32019662 None:intergenic 55.0%
! TATGGAGGTGCAGGAAGAGG+AGG + chr4.2:32017679-32017698 MS.gene065889:CDS 55.0%
!! CTTCGCTGACTCAGGAGTCT+CGG + chr4.2:32018918-32018937 MS.gene065889:CDS 55.0%
!! TTCGCTGACTCAGGAGTCTC+GGG + chr4.2:32018919-32018938 MS.gene065889:CDS 55.0%
AACATGAGCCTTGCGGCCTG+TGG - chr4.2:32018423-32018442 None:intergenic 60.0%
GCGAAGTTACACCACACCGG+AGG - chr4.2:32018904-32018923 None:intergenic 60.0%
GTGCTGCGGCAGCCTCTTTA+CGG - chr4.2:32019000-32019019 None:intergenic 60.0%
GTTTCGACTCAGCTGCCTCC+TGG - chr4.2:32019066-32019085 None:intergenic 60.0%
TAATGACGACGGCAACGGGC+TGG - chr4.2:32020090-32020109 None:intergenic 60.0%
! TTGTAGGTGGGCTCCTAGCG+CGG + chr4.2:32017978-32017997 MS.gene065889:intron 60.0%
!! GCTCTAGAGCGCCAATCAGC+AGG + chr4.2:32019139-32019158 MS.gene065889:CDS 60.0%
AGAGGCTGCCGCAGCACATC+AGG + chr4.2:32019003-32019022 MS.gene065889:CDS 65.0%
AGTCCACACCACAGGCCGCA+AGG + chr4.2:32018412-32018431 MS.gene065889:CDS 65.0%
GGCAGCCTCCTGATGTGCTG+CGG - chr4.2:32019014-32019033 None:intergenic 65.0%
TCGCTGGAGTGAGACCCCAG+AGG + chr4.2:32018056-32018075 MS.gene065889:CDS 65.0%
! CTCCTGCATCCCGTTCTGGG+AGG - chr4.2:32018789-32018808 None:intergenic 65.0%
AGCTGCCTCCTGGCGTGCTG+TGG - chr4.2:32019056-32019075 None:intergenic 70.0%
CGCAGGGGACGCCAATCAGC+AGG + chr4.2:32019187-32019206 MS.gene065889:CDS 70.0%
GAGCCTTGCGGCCTGTGGTG+TGG - chr4.2:32018418-32018437 None:intergenic 70.0%
GGCCTCCCAGAACGGGATGC+AGG + chr4.2:32018784-32018803 MS.gene065889:CDS 70.0%
GGCGGAGCAGTCCACACCAC+AGG + chr4.2:32018404-32018423 MS.gene065889:CDS 70.0%
GGCTGCCGCAGCACATCAGG+AGG + chr4.2:32019006-32019025 MS.gene065889:CDS 70.0%
GGCTGCCTCCTGACGTGCTG+CGG - chr4.2:32019035-32019054 None:intergenic 70.0%
GGAGGCAGCCACAGCACGCC+AGG + chr4.2:32019045-32019064 MS.gene065889:CDS 75.0%
GGAGGCTGCCGCAGCACGTC+AGG + chr4.2:32019024-32019043 MS.gene065889:CDS 75.0%
GGCAGCCACAGCACGCCAGG+AGG + chr4.2:32019048-32019067 MS.gene065889:CDS 75.0%
GGCTGCCGCAGCACGTCAGG+AGG + chr4.2:32019027-32019046 MS.gene065889:CDS 75.0%
!! GCAGCAGCAGGCGCCGCGCT+AGG - chr4.2:32017994-32018013 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 32017353 32020119 32017353 ID=MS.gene065889
chr4.2 mRNA 32017353 32020119 32017353 ID=MS.gene065889.t1;Parent=MS.gene065889
chr4.2 exon 32017353 32017876 32017353 ID=MS.gene065889.t1.exon1;Parent=MS.gene065889.t1
chr4.2 CDS 32017353 32017876 32017353 ID=cds.MS.gene065889.t1;Parent=MS.gene065889.t1
chr4.2 exon 32017984 32018110 32017984 ID=MS.gene065889.t1.exon2;Parent=MS.gene065889.t1
chr4.2 CDS 32017984 32018110 32017984 ID=cds.MS.gene065889.t1;Parent=MS.gene065889.t1
chr4.2 exon 32018182 32018460 32018182 ID=MS.gene065889.t1.exon3;Parent=MS.gene065889.t1
chr4.2 CDS 32018182 32018460 32018182 ID=cds.MS.gene065889.t1;Parent=MS.gene065889.t1
chr4.2 exon 32018548 32018649 32018548 ID=MS.gene065889.t1.exon4;Parent=MS.gene065889.t1
chr4.2 CDS 32018548 32018649 32018548 ID=cds.MS.gene065889.t1;Parent=MS.gene065889.t1
chr4.2 exon 32018737 32020119 32018737 ID=MS.gene065889.t1.exon5;Parent=MS.gene065889.t1
chr4.2 CDS 32018737 32020119 32018737 ID=cds.MS.gene065889.t1;Parent=MS.gene065889.t1
Gene Sequence

>MS.gene065889

ATGGATCGTAGTTGGATGTATGATAGGATCAATCCACATAGGAAAGGCTTGAACTATGAGTTTGTTAGTGGAGTTCAGGAGTTTATTAAGAAGGCCAAGGAACAACCCTGCTTTTTGTCTGAGAGAAAGATCAAGTGTCCATGTGCAATGTGCAAGTGTGTAAAGTCTTTAACTCCAAGAGAGGTGAAAACTCATTTGTACAAGAGTGGGTTTCAACTAAACTATTTGGTCTGGACTGAGCATGGAGAACTTGAGCAAAATATTTGTCTAGGGAGTCAATCGAATAGCAGTAGACATATGGAGGAGGAGGATCCCAAAACTCCACATATGGAGGTGCAGGAAGAGGAGGATCCCAAAGTTCCTCATATGGAGGAATCAGAAGAGGAGGAGGAATCAGAAGAGGAGGAGGATCCCAAAACTCCTCATACAGAGGATTCAGAAGAGGAGGAGGATCCCAAAACTCTCCAAGTTTCAGACAAGCAGAATGCTGATGGGAAGGTTCTTATACGGCCCTGTGGTCTAGGGTAAGTTATAATATTGTTTGTTTTGTTCTTTAAGCACTTTTTTTGTTTTTTTGTGTGTGCGTGTGTGTGTGTGTTGATGGTTGACATTTAGTTTGGACTTTTTGTAGGTGGGCTCCTAGCGCGGCGCCTGCTGCTGCGATTAAACACGCCATCCAGTCACACTTTCAGGGTCCTTTCTATCGCTGGAGTGAGACCCCAGAGGATGTAAGGGAATATTGGTGGAAGTTGTTTGGGGTAAGTTGTGTTTATTTAATTACTAAGTAATTGCCCCTACATAACGATAACTAGTTAGATTCCTTTTTTAGGACAAGATTGCTTGGGATCCTCGTGATCATGGGTATATCAAAAAGACGTTTCAAACAAGAGGCGCAAAACGCCTTTCAGATATGCTCTCAAAAGTGAGGAAGAAGGGGACGAGACCTCATTGGATATGTGAAGAGGCTTGGAAGGGTCTTAATGTCCATTGGGAGGGTGAAGCCTTTATAAAGATCTCTAGCCAAAATAAGACCAATCGTAATTCGTGTAAAGGCGGAGCAGTCCACACCACAGGCCGCAAGGCTCATGTTGATGTGGCACTTAGCATGGTATGCATTTAAATCACACTTATTGTCTTGTTCATTATCTTAGAATGTGTAATATTTATTAATGTGTTGTTTTTTAATTTAATGCAGGCTCAAGAACTTGGGCGGTCTGTGGATCCCGATGAGCTCTTTTTAGCCACCCATAAAAGGAAGTCTGGCAATTGGGTTGATGACCGCTCTCAAACAACATATGTAAGTTGTTGGCCCTTATATTTTTTATATCATATATAATATGACTCTTGAACAAAATGATATTAGGTTATGTTTCCTTTTTTCCAGAAACAATATCACGATCGTCTGAAGGAGGTACAAACACAAAATGGTAAGGCCTCCCAGAACGGGATGCAGGAGATAGATGGGGCGACGAAACTTGAATTGTGGAAAGAGGTTGCTGGTGGAAAGAGTCGAGGTCGGTGTTATGGCACTGCAGACTTTGCTTTAAACCTCCGGTGTGGTGTAACTTCGCTGACTCAGGAGTCTCGGGAACCTTATAGTGGTGGGTGTGATCATGCTATGCATCTAGAGGCCATTGATGCAGTCCGTAAAGAGGCTGCCGCAGCACATCAGGAGGCTGCCGCAGCACGTCAGGAGGCAGCCACAGCACGCCAGGAGGCAGCTGAGTCGAAACAACATTATCAGCATTTGGAGGAGCAGCTGCGCAAAGTAATGAAGCACATGAAAGCTCTAGAGCGCCAATCAGCAGGTGCTTTCACAAGTGTGAGTCAAGCTCGCAGGGGACGCCAATCAGCAGGTGCTTTCACAAGTGTGAGTCAAGCTCGCAGGGGACATCCTCGCTATGATGATGACCATTCACTAGACGAGTTCTTAGCTGACCGTCGAAGAAAGAAACATCTAGCTCTAAGGCGACATTCTCATTATGATGACGACTATTCAGTAGATGAGATCTTCCCAAACCGTCGCCAAAAACATCAAGCTCACAAGAGACATTATCACTATGATGATGAGGATTCGCTGGATTCACTCTTACCAAAGCATCATCAAGCTGAAAGGGGACATCCTCGCTACGATGATGAGGATTCACTAGATGAGGTTTTACCAAAGCAGCGTCAAGCTAAAAGGGGTCGTTCTCACTATGACGACGACGACTCTCTAGATGAGGTCTTACCAAAGCAACATCATGCTAAAAGGGGACATCCTCACTATGACGATGATGACGATTTGCCAGACGGGGTCTTACCAAAGCAACGACAAGCTAAAAAGCGGCATCCTCACCATGATAATGACGAGGATTCGCTACATGAGGACTTACCAAAGAATCATCAAGCTAAAAGGGGACGTCCTCACTATGATGACGAAGACAATTTGTTAGATGGGGTTTTACCAAAGCAACCTCAAGCTAAAAAGCGACATCCTCACTATGATAATGATGGGGATTCGTTACATGAGGACTTACCAAAGAATCATCAAGCTGAAAGGGGACAGCCTCACTATGATGATGATGATGACGATTTGCCAGATGGGGTTTTACCAAAGCAACGTCAAGCTAAAAAGCTACATCCTCACTATGATAATGATGAGGATTCGCTACATGAGGACTTACCAAAGAATCATCAAGCTAAAAGGGGACGTCCTCTTTATGATGACACCGATTCACTAGACGAGGTCTTACCAGCCCGTTGCCGTCGTCATTACCGTAGTTGA

Protein sequence

>MS.gene065889.t1

MDRSWMYDRINPHRKGLNYEFVSGVQEFIKKAKEQPCFLSERKIKCPCAMCKCVKSLTPREVKTHLYKSGFQLNYLVWTEHGELEQNICLGSQSNSSRHMEEEDPKTPHMEVQEEEDPKVPHMEESEEEEESEEEEDPKTPHTEDSEEEEDPKTLQVSDKQNADGKVLIRPCGLGWAPSAAPAAAIKHAIQSHFQGPFYRWSETPEDVREYWWKLFGDKIAWDPRDHGYIKKTFQTRGAKRLSDMLSKVRKKGTRPHWICEEAWKGLNVHWEGEAFIKISSQNKTNRNSCKGGAVHTTGRKAHVDVALSMAQELGRSVDPDELFLATHKRKSGNWVDDRSQTTYKQYHDRLKEVQTQNGKASQNGMQEIDGATKLELWKEVAGGKSRGRCYGTADFALNLRCGVTSLTQESREPYSGGCDHAMHLEAIDAVRKEAAAAHQEAAAARQEAATARQEAAESKQHYQHLEEQLRKVMKHMKALERQSAGAFTSVSQARRGRQSAGAFTSVSQARRGHPRYDDDHSLDEFLADRRRKKHLALRRHSHYDDDYSVDEIFPNRRQKHQAHKRHYHYDDEDSLDSLLPKHHQAERGHPRYDDEDSLDEVLPKQRQAKRGRSHYDDDDSLDEVLPKQHHAKRGHPHYDDDDDLPDGVLPKQRQAKKRHPHHDNDEDSLHEDLPKNHQAKRGRPHYDDEDNLLDGVLPKQPQAKKRHPHYDNDGDSLHEDLPKNHQAERGQPHYDDDDDDLPDGVLPKQRQAKKLHPHYDNDEDSLHEDLPKNHQAKRGRPLYDDTDSLDEVLPARCRRHYRS