Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065905.t1 | XP_013456642.1 | 93.2 | 162 | 10 | 1 | 2 | 162 | 1 | 162 | 1.40E-77 | 298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065905.t1 | Q4QTJ1 | 37.3 | 158 | 96 | 3 | 1 | 156 | 38 | 194 | 4.4e-27 | 122.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065905.t1 | A0A072UNP4 | 93.2 | 162 | 10 | 1 | 2 | 162 | 1 | 162 | 1.0e-77 | 298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene065905 | 0.803809 | 2.92E-49 | -1.69E-46 |
| MS.gene049236 | MS.gene065905 | -0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene04933 | MS.gene065905 | 0.811441 | 6.99E-51 | -1.69E-46 |
| MS.gene050787 | MS.gene065905 | 0.837207 | 5.96E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene065905 | 0.801668 | 8.08E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene065905 | -0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene065905 | 0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene057469 | MS.gene065905 | 0.834889 | 2.31E-56 | -1.69E-46 |
| MS.gene058710 | MS.gene065905 | 0.819148 | 1.35E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene065905 | 0.820066 | 8.35E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene065905 | 0.80464 | 1.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065905.t1 | MTR_4g478140 | 93.210 | 162 | 10 | 1 | 2 | 162 | 1 | 162 | 7.87e-106 | 299 |
| MS.gene065905.t1 | MTR_4g478130 | 77.640 | 161 | 36 | 0 | 2 | 162 | 1 | 161 | 6.68e-89 | 256 |
| MS.gene065905.t1 | MTR_3g055130 | 30.952 | 126 | 80 | 2 | 2 | 124 | 1 | 122 | 2.26e-15 | 69.3 |
| MS.gene065905.t1 | MTR_3g055120 | 33.333 | 102 | 66 | 2 | 28 | 128 | 26 | 126 | 4.70e-12 | 60.8 |
| MS.gene065905.t1 | MTR_3g055120 | 32.353 | 102 | 65 | 2 | 28 | 128 | 26 | 124 | 4.32e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGTGGATACTTAGAATT+TGG | 0.200939 | 4.1:+27114558 | MS.gene065905:CDS |
| TGAGCCATTGGCTAACATTA+TGG | 0.279776 | 4.1:+27114704 | MS.gene065905:CDS |
| GTTTCTGTTGAGGTAATTCT+TGG | 0.289058 | 4.1:-27114733 | None:intergenic |
| CTCTTTGGCACCATTGGTAT+TGG | 0.293635 | 4.1:+27111928 | MS.gene065905:CDS |
| AGATCCCATGCTTCATTTGC+TGG | 0.334877 | 4.1:-27111907 | None:intergenic |
| AATTTCTCTTTGTAACCAGC+TGG | 0.370226 | 4.1:-27114489 | None:intergenic |
| ATTTGTTTCCATTGAGCCAT+TGG | 0.398190 | 4.1:+27114692 | MS.gene065905:CDS |
| TCTTTGTAACCAGCTGGGCC+AGG | 0.438011 | 4.1:-27114483 | None:intergenic |
| TGGGATCTCTTTGGCACCAT+TGG | 0.444724 | 4.1:+27111922 | MS.gene065905:CDS |
| AATGAAGCATGGGATCTCTT+TGG | 0.446830 | 4.1:+27111913 | MS.gene065905:CDS |
| TTGTAGCCTTGTTTCTGTTG+AGG | 0.460261 | 4.1:-27114743 | None:intergenic |
| ATGCTTCATTTGCTGGCACA+TGG | 0.468256 | 4.1:-27111900 | None:intergenic |
| GTGGAGCTAGTTGAAGGAGA+TGG | 0.469970 | 4.1:+27111991 | MS.gene065905:CDS |
| CAGAAGGTGGAGCTAGTTGA+AGG | 0.471435 | 4.1:+27111985 | MS.gene065905:CDS |
| GTTGAAGGAGATGGAGGAGT+TGG | 0.496688 | 4.1:+27112000 | MS.gene065905:CDS |
| AATGTTAGCCAATGGCTCAA+TGG | 0.500199 | 4.1:-27114700 | None:intergenic |
| GAGCTAGTTGAAGGAGATGG+AGG | 0.508883 | 4.1:+27111994 | MS.gene065905:CDS |
| GCCTCAATTGTTTCAGAAGG+TGG | 0.512921 | 4.1:+27111972 | MS.gene065905:CDS |
| AAAGAAGCAGAGGTAGTTGA+AGG | 0.515702 | 4.1:+27114540 | MS.gene065905:CDS |
| ACAGGTACACCTGGCCCAGC+TGG | 0.517233 | 4.1:+27114474 | MS.gene065905:intron |
| AATGGAAACAAATGAGGCAT+TGG | 0.521286 | 4.1:-27114682 | None:intergenic |
| TGGAAAAGAAAGATGATGTC+TGG | 0.523137 | 4.1:+27111853 | None:intergenic |
| ATTTCTCTTTGTAACCAGCT+GGG | 0.558097 | 4.1:-27114488 | None:intergenic |
| CTCAAACTCACATTCACTCC+AGG | 0.561646 | 4.1:+27112030 | MS.gene065905:CDS |
| GATGCCTCAATTGTTTCAGA+AGG | 0.566397 | 4.1:+27111969 | MS.gene065905:CDS |
| CTACCTCTGCTTCTTTGATG+CGG | 0.573581 | 4.1:-27114533 | None:intergenic |
| ATGTGCCAGCAAATGAAGCA+TGG | 0.580036 | 4.1:+27111902 | MS.gene065905:CDS |
| TCCACCTTCTGAAACAATTG+AGG | 0.585010 | 4.1:-27111973 | None:intergenic |
| TGTGCCAGCAAATGAAGCAT+GGG | 0.591233 | 4.1:+27111903 | MS.gene065905:CDS |
| GGAGTTTGAACAGGTACACC+TGG | 0.591936 | 4.1:+27114465 | MS.gene065905:intron |
| TGGCTCAATGGAAACAAATG+AGG | 0.595922 | 4.1:-27114688 | None:intergenic |
| GAAGCAGAGGTAGTTGAAGG+TGG | 0.597763 | 4.1:+27114543 | MS.gene065905:CDS |
| ACTTCCATAATGTTAGCCAA+TGG | 0.636775 | 4.1:-27114708 | None:intergenic |
| AAACCGCATCAAAGAAGCAG+AGG | 0.668061 | 4.1:+27114530 | MS.gene065905:CDS |
| TGGTATTGGAAAACTCGTTG+AGG | 0.676186 | 4.1:+27111942 | MS.gene065905:CDS |
| GAATTACCTCAACAGAAACA+AGG | 0.699162 | 4.1:+27114737 | MS.gene065905:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTACTTAAAAAAAAATAAAA+GGG | - | chr4.1:27114154-27114173 | None:intergenic | 10.0% |
| !! | TACTTAAAAAAAAATAAAAG+GGG | - | chr4.1:27114153-27114172 | None:intergenic | 10.0% |
| !! | TCTACTTAAAAAAAAATAAA+AGG | - | chr4.1:27114155-27114174 | None:intergenic | 10.0% |
| !!! | TTATTAATATATTTTCTTTG+GGG | - | chr4.1:27114325-27114344 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTTTTTTTTTTAT+AGG | - | chr4.1:27114412-27114431 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAGTAGAAAATA+TGG | + | chr4.1:27114160-27114179 | MS.gene065905:intron | 10.0% |
| !! | AAAATCAACAATTCTAAATT+AGG | + | chr4.1:27113760-27113779 | MS.gene065905:intron | 15.0% |
| !! | AAATCAACAATTCTAAATTA+GGG | + | chr4.1:27113761-27113780 | MS.gene065905:intron | 15.0% |
| !! | AATACTAAATACAAATCTAA+AGG | + | chr4.1:27114363-27114382 | MS.gene065905:intron | 15.0% |
| !! | ACATGATTATTATATATTTC+GGG | + | chr4.1:27112403-27112422 | MS.gene065905:intron | 15.0% |
| !! | CACATGATTATTATATATTT+CGG | + | chr4.1:27112402-27112421 | MS.gene065905:intron | 15.0% |
| !! | TATATAAGTAGTTTCATATT+TGG | + | chr4.1:27113115-27113134 | MS.gene065905:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTATAGGA+GGG | - | chr4.1:27114408-27114427 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTTTATAGG+AGG | - | chr4.1:27114409-27114428 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTATAGGAG+GGG | - | chr4.1:27114407-27114426 | None:intergenic | 15.0% |
| !! | AAATTCAATAAGTGTATGTT+TGG | + | chr4.1:27112603-27112622 | MS.gene065905:intron | 20.0% |
| !! | AGAAAGTTATGTATATGTAT+AGG | - | chr4.1:27112329-27112348 | None:intergenic | 20.0% |
| !! | CAAATAACAAAGAAAAAACA+TGG | + | chr4.1:27113911-27113930 | MS.gene065905:intron | 20.0% |
| !! | GGTCAATCATATATTATTTA+TGG | + | chr4.1:27112051-27112070 | MS.gene065905:intron | 20.0% |
| !! | TAAATAATATATGATTGACC+TGG | - | chr4.1:27112051-27112070 | None:intergenic | 20.0% |
| !! | TATATATTTCGGGAAAAATT+TGG | + | chr4.1:27112413-27112432 | MS.gene065905:intron | 20.0% |
| !!! | AATCACTTTGTAGTATTTTT+GGG | - | chr4.1:27113500-27113519 | None:intergenic | 20.0% |
| !!! | CATTATTCAAGTTATTACAT+TGG | + | chr4.1:27113666-27113685 | MS.gene065905:intron | 20.0% |
| !!! | TAATCACTTTGTAGTATTTT+TGG | - | chr4.1:27113501-27113520 | None:intergenic | 20.0% |
| !!! | TTTTCATATATAGTTGTGTT+AGG | - | chr4.1:27112306-27112325 | None:intergenic | 20.0% |
| ! | AACAATTCTAAATTAGGGTT+TGG | + | chr4.1:27113766-27113785 | MS.gene065905:intron | 25.0% |
| ! | AAGTAGAAAATATGGCTATT+GGG | + | chr4.1:27114168-27114187 | MS.gene065905:intron | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4.1:27112122-27112141 | None:intergenic | 25.0% |
| ! | ACAATTCTAAATTAGGGTTT+GGG | + | chr4.1:27113767-27113786 | MS.gene065905:intron | 25.0% |
| ! | ACTTGAATAATGAGAATGTA+AGG | - | chr4.1:27113658-27113677 | None:intergenic | 25.0% |
| ! | CTGAAATTAACAATTCTCTT+TGG | + | chr4.1:27113724-27113743 | MS.gene065905:intron | 25.0% |
| ! | TAAGTAGAAAATATGGCTAT+TGG | + | chr4.1:27114167-27114186 | MS.gene065905:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4.1:27112134-27112153 | MS.gene065905:intron | 25.0% |
| ! | TTCTTTACAATCACGTATAA+AGG | + | chr4.1:27113023-27113042 | MS.gene065905:intron | 25.0% |
| !!! | CGTTTTGAAATAATAGAGAA+AGG | + | chr4.1:27114600-27114619 | MS.gene065905:CDS | 25.0% |
| !!! | GATGCTTGTTATTTGTTAAT+GGG | - | chr4.1:27113864-27113883 | None:intergenic | 25.0% |
| !!! | GTAACATTGATTGTTTTGAT+TGG | + | chr4.1:27114444-27114463 | MS.gene065905:intron | 25.0% |
| !!! | TGATGCTTGTTATTTGTTAA+TGG | - | chr4.1:27113865-27113884 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4.1:27112121-27112140 | MS.gene065905:intron | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4.1:27112147-27112166 | MS.gene065905:intron | 30.0% | |
| AAATAAAAGGGGCAGAATTT+AGG | - | chr4.1:27114142-27114161 | None:intergenic | 30.0% | |
| AACATGTCTATACAAATGGA+GGG | + | chr4.1:27112503-27112522 | MS.gene065905:intron | 30.0% | |
| CTAAAAACTGAGTCAATTGA+TGG | - | chr4.1:27112370-27112389 | None:intergenic | 30.0% | |
| CTTAGGATTATTACTTCAAG+AGG | - | chr4.1:27113631-27113650 | None:intergenic | 30.0% | |
| GAAAAAACATGGAACAAACA+TGG | + | chr4.1:27113922-27113941 | MS.gene065905:intron | 30.0% | |
| GAGAGAAACATAAATCATGA+AGG | + | chr4.1:27113340-27113359 | MS.gene065905:intron | 30.0% | |
| GGTTTGGGAAATCAAAATTA+GGG | + | chr4.1:27113782-27113801 | MS.gene065905:intron | 30.0% | |
| TACCAACATGTCTATACAAA+TGG | + | chr4.1:27112499-27112518 | MS.gene065905:intron | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4.1:27112096-27112115 | None:intergenic | 30.0% | |
| TCAATCTAGAGATTTGTGTA+TGG | + | chr4.1:27112538-27112557 | MS.gene065905:intron | 30.0% | |
| TGAGAATGTAAGGATTTCTT+AGG | - | chr4.1:27113648-27113667 | None:intergenic | 30.0% | |
| ! | CATTTTCTCTCATTTATGCT+TGG | - | chr4.1:27112815-27112834 | None:intergenic | 30.0% |
| ! | GCGGTTTTCATTATCAATTT+TGG | - | chr4.1:27114517-27114536 | None:intergenic | 30.0% |
| ! | GTAGCTCAAATTTGTTCAAA+CGG | + | chr4.1:27112760-27112779 | MS.gene065905:intron | 30.0% |
| ! | TGAGCAGAAAAAGAAACTTT+TGG | + | chr4.1:27112580-27112599 | MS.gene065905:intron | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr4.1:27112237-27112256 | None:intergenic | 30.0% |
| !!! | CATTTTTTAGCTTGTCATGT+AGG | - | chr4.1:27113417-27113436 | None:intergenic | 30.0% |
| AAAACATGGAACAAACATGG+AGG | + | chr4.1:27113925-27113944 | MS.gene065905:intron | 35.0% | |
| AAGAGGAGAAGGAATGAAAA+TGG | + | chr4.1:27113953-27113972 | MS.gene065905:intron | 35.0% | |
| AATGGAAACAAATGAGGCAT+TGG | - | chr4.1:27114685-27114704 | None:intergenic | 35.0% | |
| AATTTCTCTTTGTAACCAGC+TGG | - | chr4.1:27114492-27114511 | None:intergenic | 35.0% | |
| ACTTCCATAATGTTAGCCAA+TGG | - | chr4.1:27114711-27114730 | None:intergenic | 35.0% | |
| AGCGTATAGCTATAAAAGAG+TGG | + | chr4.1:27112886-27112905 | MS.gene065905:intron | 35.0% | |
| ATAAAAGAGTGGTCTCGATT+AGG | + | chr4.1:27112897-27112916 | MS.gene065905:intron | 35.0% | |
| ATTTCTCTTTGTAACCAGCT+GGG | - | chr4.1:27114491-27114510 | None:intergenic | 35.0% | |
| ATTTGTTTCCATTGAGCCAT+TGG | + | chr4.1:27114692-27114711 | MS.gene065905:CDS | 35.0% | |
| CAACATGTCTATACAAATGG+AGG | + | chr4.1:27112502-27112521 | MS.gene065905:intron | 35.0% | |
| CAGAATTTAGGCAAATGTTC+AGG | - | chr4.1:27114130-27114149 | None:intergenic | 35.0% | |
| CTCCATTTGTATAGACATGT+TGG | - | chr4.1:27112504-27112523 | None:intergenic | 35.0% | |
| GAAGGTGGATACTTAGAATT+TGG | + | chr4.1:27114558-27114577 | MS.gene065905:CDS | 35.0% | |
| GAATTACCTCAACAGAAACA+AGG | + | chr4.1:27114737-27114756 | MS.gene065905:CDS | 35.0% | |
| GAGCTACAAATCACTTTAGA+AGG | - | chr4.1:27112747-27112766 | None:intergenic | 35.0% | |
| GGGTTTGGGAAATCAAAATT+AGG | + | chr4.1:27113781-27113800 | MS.gene065905:intron | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr4.1:27112232-27112251 | MS.gene065905:intron | 35.0% | |
| GTTTCTGTTGAGGTAATTCT+TGG | - | chr4.1:27114736-27114755 | None:intergenic | 35.0% | |
| TCTGCTTCTACTTTCTATGT+TGG | - | chr4.1:27114202-27114221 | None:intergenic | 35.0% | |
| TGCTAGCATGAAACTATATC+AGG | - | chr4.1:27113293-27113312 | None:intergenic | 35.0% | |
| ! | AACGAGTTTTCCAATACCAA+TGG | - | chr4.1:27111941-27111960 | None:intergenic | 35.0% |
| ! | AACTTCTAGTTACAAGTCGT+GGG | - | chr4.1:27112708-27112727 | None:intergenic | 35.0% |
| ! | CTTGTCATGTAGGTGTTTTT+GGG | - | chr4.1:27113407-27113426 | None:intergenic | 35.0% |
| ! | TTGCGATTAAATTTTTGCCC+AGG | - | chr4.1:27112958-27112977 | None:intergenic | 35.0% |
| !! | TTGTCATGTAGGTGTTTTTG+GGG | - | chr4.1:27113406-27113425 | None:intergenic | 35.0% |
| !!! | GTTTTGATTGGAGTTTGAAC+AGG | + | chr4.1:27114456-27114475 | MS.gene065905:intron | 35.0% |
| AAAGAAGCAGAGGTAGTTGA+AGG | + | chr4.1:27114540-27114559 | MS.gene065905:CDS | 40.0% | |
| AATGAAGCATGGGATCTCTT+TGG | + | chr4.1:27111913-27111932 | MS.gene065905:CDS | 40.0% | |
| AATGTTAGCCAATGGCTCAA+TGG | - | chr4.1:27114703-27114722 | None:intergenic | 40.0% | |
| AGAAAATATGGCTATTGGGC+TGG | + | chr4.1:27114172-27114191 | MS.gene065905:intron | 40.0% | |
| GAAAATATGGCTATTGGGCT+GGG | + | chr4.1:27114173-27114192 | MS.gene065905:intron | 40.0% | |
| GATGCCTCAATTGTTTCAGA+AGG | + | chr4.1:27111969-27111988 | MS.gene065905:CDS | 40.0% | |
| TGGCTCAATGGAAACAAATG+AGG | - | chr4.1:27114691-27114710 | None:intergenic | 40.0% | |
| ! | ACTTCTAGTTACAAGTCGTG+GGG | - | chr4.1:27112707-27112726 | None:intergenic | 40.0% |
| ! | CAACTTCTAGTTACAAGTCG+TGG | - | chr4.1:27112709-27112728 | None:intergenic | 40.0% |
| ! | GCTTGTCATGTAGGTGTTTT+TGG | - | chr4.1:27113408-27113427 | None:intergenic | 40.0% |
| ! | TGAGCCATTGGCTAACATTA+TGG | + | chr4.1:27114704-27114723 | MS.gene065905:CDS | 40.0% |
| ! | TGGTATTGGAAAACTCGTTG+AGG | + | chr4.1:27111942-27111961 | MS.gene065905:CDS | 40.0% |
| !! | TCCACCTTCTGAAACAATTG+AGG | - | chr4.1:27111976-27111995 | None:intergenic | 40.0% |
| !! | TTGTAGCCTTGTTTCTGTTG+AGG | - | chr4.1:27114746-27114765 | None:intergenic | 40.0% |
| !!! | TGTCATGTAGGTGTTTTTGG+GGG | - | chr4.1:27113405-27113424 | None:intergenic | 40.0% |
| AAACCGCATCAAAGAAGCAG+AGG | + | chr4.1:27114530-27114549 | MS.gene065905:CDS | 45.0% | |
| AGAAAGTAGAAGCAGAGCCT+GGG | + | chr4.1:27114206-27114225 | MS.gene065905:intron | 45.0% | |
| AGAGATTGAGTCACTGAGAG+AGG | + | chr4.1:27114051-27114070 | MS.gene065905:intron | 45.0% | |
| AGATCCCATGCTTCATTTGC+TGG | - | chr4.1:27111910-27111929 | None:intergenic | 45.0% | |
| ATGTGCCAGCAAATGAAGCA+TGG | + | chr4.1:27111902-27111921 | MS.gene065905:CDS | 45.0% | |
| CAAACATGGAGGAAGTGAAG+AGG | + | chr4.1:27113936-27113955 | MS.gene065905:intron | 45.0% | |
| CCAGGAATTTCTTAGAGCCT+GGG | + | chr4.1:27112938-27112957 | MS.gene065905:intron | 45.0% | |
| CTACCTCTGCTTCTTTGATG+CGG | - | chr4.1:27114536-27114555 | None:intergenic | 45.0% | |
| CTCAAACTCACATTCACTCC+AGG | + | chr4.1:27112030-27112049 | MS.gene065905:CDS | 45.0% | |
| CTCTTTGGCACCATTGGTAT+TGG | + | chr4.1:27111928-27111947 | MS.gene065905:CDS | 45.0% | |
| GAGATTGAGTCACTGAGAGA+GGG | + | chr4.1:27114052-27114071 | MS.gene065905:intron | 45.0% | |
| GAGTCACGATAAGTTAGAGG+AGG | + | chr4.1:27114076-27114095 | MS.gene065905:intron | 45.0% | |
| GCCTCAATTGTTTCAGAAGG+TGG | + | chr4.1:27111972-27111991 | MS.gene065905:CDS | 45.0% | |
| GCCTGTTGGTGTGTTTGTTT+GGG | - | chr4.1:27113476-27113495 | None:intergenic | 45.0% | |
| GGAGAGTCACGATAAGTTAG+AGG | + | chr4.1:27114073-27114092 | MS.gene065905:intron | 45.0% | |
| GTCAACCTACTTAGCATCAC+CGG | - | chr4.1:27114276-27114295 | None:intergenic | 45.0% | |
| TAGAAAGTAGAAGCAGAGCC+TGG | + | chr4.1:27114205-27114224 | MS.gene065905:intron | 45.0% | |
| TGGGCTGTGATGCTTTGATT+TGG | - | chr4.1:27113457-27113476 | None:intergenic | 45.0% | |
| TGTGCCAGCAAATGAAGCAT+GGG | + | chr4.1:27111903-27111922 | MS.gene065905:CDS | 45.0% | |
| ! | AAGAGGCGCAAATTGAGAGA+GGG | + | chr4.1:27113996-27114015 | MS.gene065905:intron | 45.0% |
| ! | ATGCTTCATTTGCTGGCACA+TGG | - | chr4.1:27111903-27111922 | None:intergenic | 45.0% |
| !!! | GTCATGTAGGTGTTTTTGGG+GGG | - | chr4.1:27113404-27113423 | None:intergenic | 45.0% |
| !!! | TAGTATTTTTGGGCGCCTGT+TGG | - | chr4.1:27113490-27113509 | None:intergenic | 45.0% |
| !! | AAAGAAAATATATTAATAAA+AGG | + | chr4.1:27114326-27114345 | MS.gene065905:intron | 5.0% |
| !! | AAGAAAATATATTAATAAAA+GGG | + | chr4.1:27114327-27114346 | MS.gene065905:intron | 5.0% |
| !!! | TTTATTAATATATTTTCTTT+GGG | - | chr4.1:27114326-27114345 | None:intergenic | 5.0% |
| !!! | TTTTATTAATATATTTTCTT+TGG | - | chr4.1:27114327-27114346 | None:intergenic | 5.0% |
| CAGAAGGTGGAGCTAGTTGA+AGG | + | chr4.1:27111985-27112004 | MS.gene065905:CDS | 50.0% | |
| CGCCTGTTGGTGTGTTTGTT+TGG | - | chr4.1:27113477-27113496 | None:intergenic | 50.0% | |
| CTGAGAGTTGAGAGAGGAAG+AGG | + | chr4.1:27113979-27113998 | MS.gene065905:intron | 50.0% | |
| GAAGCAGAGGTAGTTGAAGG+TGG | + | chr4.1:27114543-27114562 | MS.gene065905:CDS | 50.0% | |
| GAGCTAGTTGAAGGAGATGG+AGG | + | chr4.1:27111994-27112013 | MS.gene065905:CDS | 50.0% | |
| GCCAGGAATTTCTTAGAGCC+TGG | + | chr4.1:27112937-27112956 | MS.gene065905:intron | 50.0% | |
| GCCCAAACAAACACACCAAC+AGG | + | chr4.1:27113472-27113491 | MS.gene065905:intron | 50.0% | |
| GGAGTTTGAACAGGTACACC+TGG | + | chr4.1:27114465-27114484 | MS.gene065905:intron | 50.0% | |
| GTGGAGCTAGTTGAAGGAGA+TGG | + | chr4.1:27111991-27112010 | MS.gene065905:CDS | 50.0% | |
| GTTGAAGGAGATGGAGGAGT+TGG | + | chr4.1:27112000-27112019 | MS.gene065905:CDS | 50.0% | |
| TGACACCGGTGATGCTAAGT+AGG | + | chr4.1:27114268-27114287 | MS.gene065905:intron | 50.0% | |
| TGGAGACTGAGAGTTGAGAG+AGG | + | chr4.1:27113973-27113992 | MS.gene065905:intron | 50.0% | |
| TGGAGGAAGTGAAGAGGAGA+AGG | + | chr4.1:27113942-27113961 | MS.gene065905:intron | 50.0% | |
| TGGGATCTCTTTGGCACCAT+TGG | + | chr4.1:27111922-27111941 | MS.gene065905:CDS | 50.0% | |
| ! | GAAGAGGCGCAAATTGAGAG+AGG | + | chr4.1:27113995-27114014 | MS.gene065905:intron | 50.0% |
| !! | CCCAGGCTCTAAGAAATTCC+TGG | - | chr4.1:27112941-27112960 | None:intergenic | 50.0% |
| !! | GGTCTCGATTAGGTTGACAC+CGG | + | chr4.1:27112907-27112926 | MS.gene065905:intron | 50.0% |
| TCTTTGTAACCAGCTGGGCC+AGG | - | chr4.1:27114486-27114505 | None:intergenic | 55.0% | |
| ! | AGCATCACCGGTGTCAACCA+GGG | - | chr4.1:27114264-27114283 | None:intergenic | 55.0% |
| ! | TAGCATCACCGGTGTCAACC+AGG | - | chr4.1:27114265-27114284 | None:intergenic | 55.0% |
| !! | CTCGATTAGGTTGACACCGG+TGG | + | chr4.1:27112910-27112929 | MS.gene065905:intron | 55.0% |
| !! | GATTAGGTTGACACCGGTGG+CGG | + | chr4.1:27112913-27112932 | MS.gene065905:intron | 55.0% |
| GAAATTCCTGGCTCCGCCAC+CGG | - | chr4.1:27112929-27112948 | None:intergenic | 60.0% | |
| TAACCGCCCCTGGTTGACAC+CGG | + | chr4.1:27114254-27114273 | MS.gene065905:intron | 60.0% | |
| ! | GCATCACCGGTGTCAACCAG+GGG | - | chr4.1:27114263-27114282 | None:intergenic | 60.0% |
| ! | GTTACACCCCCAGCTAGCCT+GGG | - | chr4.1:27114238-27114257 | None:intergenic | 60.0% |
| ACAGGTACACCTGGCCCAGC+TGG | + | chr4.1:27114474-27114493 | MS.gene065905:intron | 65.0% | |
| GGTTACACCCCCAGCTAGCC+TGG | - | chr4.1:27114239-27114258 | None:intergenic | 65.0% | |
| ! | CTAGAGCCCAGGCTAGCTGG+GGG | + | chr4.1:27114229-27114248 | MS.gene065905:intron | 65.0% |
| ! | GCTAGAGCCCAGGCTAGCTG+GGG | + | chr4.1:27114228-27114247 | MS.gene065905:intron | 65.0% |
| ! | GGCTAGAGCCCAGGCTAGCT+GGG | + | chr4.1:27114227-27114246 | MS.gene065905:intron | 65.0% |
| ! | TCACCGGTGTCAACCAGGGG+CGG | - | chr4.1:27114260-27114279 | None:intergenic | 65.0% |
| GGGCTAGAGCCCAGGCTAGC+TGG | + | chr4.1:27114226-27114245 | MS.gene065905:intron | 70.0% | |
| ! | CAGAGCCTGGGCTAGAGCCC+AGG | + | chr4.1:27114218-27114237 | MS.gene065905:intron | 70.0% |
| ! | GCTAGCCTGGGCTCTAGCCC+AGG | - | chr4.1:27114226-27114245 | None:intergenic | 70.0% |
| !! | TTGACACCGGTGGCGGAGCC+AGG | + | chr4.1:27112920-27112939 | MS.gene065905:intron | 70.0% |
| ! | GCTGGGGGTGTAACCGCCCC+TGG | + | chr4.1:27114244-27114263 | MS.gene065905:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 27111865 | 27114779 | 27111865 | ID=MS.gene065905 |
| chr4.1 | mRNA | 27111865 | 27114779 | 27111865 | ID=MS.gene065905.t1;Parent=MS.gene065905 |
| chr4.1 | exon | 27111865 | 27112051 | 27111865 | ID=MS.gene065905.t1.exon1;Parent=MS.gene065905.t1 |
| chr4.1 | CDS | 27111865 | 27112051 | 27111865 | ID=cds.MS.gene065905.t1;Parent=MS.gene065905.t1 |
| chr4.1 | exon | 27114478 | 27114779 | 27114478 | ID=MS.gene065905.t1.exon2;Parent=MS.gene065905.t1 |
| chr4.1 | CDS | 27114478 | 27114779 | 27114478 | ID=cds.MS.gene065905.t1;Parent=MS.gene065905.t1 |
| Gene Sequence |
| Protein sequence |
