Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066052.t1 | XP_024638942.1 | 97.2 | 249 | 7 | 0 | 1 | 249 | 1 | 249 | 5.00E-138 | 500.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066052.t1 | Q09893 | 33.5 | 227 | 136 | 9 | 9 | 226 | 3 | 223 | 1.4e-19 | 98.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066052.t1 | A0A072VYK9 | 97.2 | 249 | 7 | 0 | 1 | 249 | 1 | 249 | 3.6e-138 | 500.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049993 | MS.gene066052 | -0.831693 | 1.44E-55 | -1.69E-46 |
MS.gene052011 | MS.gene066052 | 0.800586 | 1.34E-48 | -1.69E-46 |
MS.gene054010 | MS.gene066052 | -0.800813 | 1.21E-48 | -1.69E-46 |
MS.gene054183 | MS.gene066052 | -0.847532 | 1.09E-59 | -1.69E-46 |
MS.gene055358 | MS.gene066052 | -0.815286 | 9.99E-52 | -1.69E-46 |
MS.gene055604 | MS.gene066052 | -0.800182 | 1.63E-48 | -1.69E-46 |
MS.gene059609 | MS.gene066052 | -0.805724 | 1.16E-49 | -1.69E-46 |
MS.gene061114 | MS.gene066052 | 0.814641 | 1.39E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066052.t1 | MTR_1g085570 | 97.189 | 249 | 7 | 0 | 1 | 249 | 9 | 257 | 0.0 | 508 |
MS.gene066052.t1 | MTR_1g085570 | 97.189 | 249 | 7 | 0 | 1 | 249 | 1 | 249 | 0.0 | 507 |
MS.gene066052.t1 | MTR_1g085570 | 96.800 | 250 | 7 | 1 | 1 | 249 | 1 | 250 | 0.0 | 503 |
MS.gene066052.t1 | MTR_1g085570 | 97.000 | 200 | 6 | 0 | 1 | 200 | 1 | 200 | 1.51e-146 | 408 |
MS.gene066052.t1 | MTR_7g062150 | 51.389 | 288 | 92 | 2 | 10 | 249 | 14 | 301 | 9.28e-102 | 298 |
MS.gene066052.t1 | MTR_2g097520 | 49.477 | 287 | 106 | 3 | 2 | 249 | 5 | 291 | 6.34e-97 | 285 |
MS.gene066052.t1 | MTR_4g064380 | 50.545 | 275 | 106 | 3 | 4 | 249 | 8 | 281 | 6.62e-96 | 282 |
MS.gene066052.t1 | MTR_4g021800 | 52.273 | 264 | 81 | 2 | 10 | 228 | 15 | 278 | 1.08e-94 | 280 |
MS.gene066052.t1 | MTR_4g021825 | 48.097 | 289 | 101 | 1 | 10 | 249 | 36 | 324 | 3.93e-92 | 274 |
MS.gene066052.t1 | MTR_4g021800 | 51.502 | 233 | 68 | 2 | 41 | 228 | 1 | 233 | 3.58e-79 | 239 |
MS.gene066052.t1 | MTR_1g104610 | 48.511 | 235 | 111 | 4 | 11 | 235 | 10 | 244 | 6.70e-77 | 233 |
MS.gene066052.t1 | MTR_1g104610 | 53.571 | 196 | 85 | 2 | 11 | 200 | 10 | 205 | 1.87e-72 | 221 |
MS.gene066052.t1 | MTR_7g062150 | 50.691 | 217 | 59 | 2 | 10 | 178 | 14 | 230 | 9.13e-72 | 219 |
MS.gene066052.t1 | MTR_4g021800 | 49.065 | 214 | 64 | 2 | 10 | 178 | 15 | 228 | 1.42e-67 | 209 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066052.t1 | AT3G62040 | 71.698 | 212 | 57 | 3 | 41 | 249 | 1 | 212 | 1.88e-107 | 309 |
MS.gene066052.t1 | AT5G59480 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 1.55e-98 | 289 |
MS.gene066052.t1 | AT5G59480 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 1.55e-98 | 289 |
MS.gene066052.t1 | AT5G59480 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 1.55e-98 | 289 |
MS.gene066052.t1 | AT5G59480 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 1.55e-98 | 289 |
MS.gene066052.t1 | AT5G59480 | 50.549 | 273 | 103 | 3 | 4 | 245 | 8 | 279 | 3.23e-96 | 283 |
MS.gene066052.t1 | AT5G02230 | 52.434 | 267 | 100 | 3 | 10 | 249 | 14 | 280 | 4.98e-89 | 265 |
MS.gene066052.t1 | AT5G02230 | 52.434 | 267 | 100 | 3 | 10 | 249 | 14 | 280 | 4.98e-89 | 265 |
MS.gene066052.t1 | AT5G59490 | 53.307 | 257 | 103 | 3 | 10 | 249 | 10 | 266 | 1.68e-88 | 263 |
MS.gene066052.t1 | AT5G02230 | 52.434 | 267 | 100 | 3 | 10 | 249 | 51 | 317 | 2.44e-88 | 265 |
MS.gene066052.t1 | AT2G32150 | 48.649 | 222 | 107 | 2 | 13 | 227 | 8 | 229 | 9.94e-79 | 238 |
MS.gene066052.t1 | AT5G59490 | 58.128 | 203 | 73 | 2 | 10 | 200 | 10 | 212 | 1.02e-72 | 221 |
MS.gene066052.t1 | AT2G32150 | 49.490 | 196 | 92 | 2 | 12 | 200 | 7 | 202 | 8.34e-68 | 209 |
MS.gene066052.t1 | AT2G32150 | 50.286 | 175 | 80 | 2 | 13 | 180 | 8 | 182 | 9.56e-60 | 187 |
Find 55 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCAACCTCCCATATTTC+AGG | 0.199588 | 1.2:-58544429 | None:intergenic |
GAGAAGCATTACCTGAAATA+TGG | 0.252058 | 1.2:+58544418 | MS.gene066052:CDS |
ATTGAGCTTAGGGATCAATT+TGG | 0.335151 | 1.2:+58543226 | MS.gene066052:CDS |
ATTCGTTGGTAGGAGTTGAT+AGG | 0.339282 | 1.2:-58543949 | None:intergenic |
AGGTTCCTTAACACGAAATC+TGG | 0.347342 | 1.2:-58543721 | None:intergenic |
GGCTTGGAAGATTGCTTTGA+GGG | 0.359868 | 1.2:+58543901 | MS.gene066052:CDS |
ATGGATACTGAAAGGATTGC+TGG | 0.379452 | 1.2:+58543031 | MS.gene066052:CDS |
ACCATCTGTGGAAGCCTTTG+AGG | 0.394435 | 1.2:+58543981 | MS.gene066052:CDS |
CTCTCTACCCATTGAGCTTA+GGG | 0.404141 | 1.2:+58543216 | MS.gene066052:CDS |
TCTGGCTTCAGTTTCTCATA+TGG | 0.405723 | 1.2:-58543703 | None:intergenic |
TACAAATCCAGACACATCTT+TGG | 0.424509 | 1.2:-58543467 | None:intergenic |
ACTCTCTACCCATTGAGCTT+AGG | 0.439304 | 1.2:+58543215 | MS.gene066052:CDS |
TGAAGCCAGATTTCGTGTTA+AGG | 0.440016 | 1.2:+58543716 | MS.gene066052:CDS |
TTAATTTCCTGTCAGGCCCT+TGG | 0.440659 | 1.2:+58543631 | MS.gene066052:intron |
TGGCTTCGACTGCAAGAGAT+TGG | 0.449210 | 1.2:-58544473 | None:intergenic |
TGGCTTGGAAGATTGCTTTG+AGG | 0.450052 | 1.2:+58543900 | MS.gene066052:CDS |
TCTAGAACATGGAACAACTA+TGG | 0.451217 | 1.2:+58543490 | MS.gene066052:CDS |
TTCGTTGGTAGGAGTTGATA+GGG | 0.461128 | 1.2:-58543948 | None:intergenic |
TATAGTACCAAAGATGTGTC+TGG | 0.470960 | 1.2:+58543460 | MS.gene066052:CDS |
AAATTGATCCCTAAGCTCAA+TGG | 0.472577 | 1.2:-58543224 | None:intergenic |
AGTTCTCAGCAGGCTTGGCT+TGG | 0.483634 | 1.2:+58543885 | MS.gene066052:CDS |
GGTCGATCGGATTTAGTGCC+TGG | 0.483986 | 1.2:+58544360 | MS.gene066052:CDS |
GCCTCAAAGGCTTCCACAGA+TGG | 0.484285 | 1.2:-58543982 | None:intergenic |
GTTGAAGTTCTCAGCAGGCT+TGG | 0.485005 | 1.2:+58543880 | MS.gene066052:CDS |
AATTGATCCCTAAGCTCAAT+GGG | 0.491033 | 1.2:-58543223 | None:intergenic |
GTTGCAAGCGGAAAAGTAGC+TGG | 0.495148 | 1.2:+58544204 | MS.gene066052:CDS |
AGAAGCATTACCTGAAATAT+GGG | 0.503577 | 1.2:+58544419 | MS.gene066052:CDS |
GAGATTGGATCATTTGTTGT+TGG | 0.507343 | 1.2:-58544458 | None:intergenic |
CTTGTTTACAGAGTATATGT+TGG | 0.507782 | 1.2:+58543415 | MS.gene066052:intron |
AACAACTATGGCAGGAATGA+AGG | 0.518265 | 1.2:+58543502 | MS.gene066052:CDS |
ATGCGGTTGAAGTTCTCAGC+AGG | 0.526884 | 1.2:+58543875 | MS.gene066052:CDS |
TTTGCAGAGGATTCGTTGGT+AGG | 0.536737 | 1.2:-58543959 | None:intergenic |
GAACATGGAACAACTATGGC+AGG | 0.541348 | 1.2:+58543494 | MS.gene066052:CDS |
AATCCTCTGCAAACCATCTG+TGG | 0.549541 | 1.2:+58543969 | MS.gene066052:CDS |
CATTGTCAAATTCGTAGCCA+AGG | 0.549744 | 1.2:-58543648 | None:intergenic |
TTCAGAGCATGGTCAGCACC+AGG | 0.555322 | 1.2:-58544378 | None:intergenic |
ATCGAAGCAAAACTTATGCA+TGG | 0.557183 | 1.2:-58544500 | None:intergenic |
ATCTCTTGCAGTCGAAGCCA+CGG | 0.558687 | 1.2:+58544476 | MS.gene066052:CDS |
ATGGTTTGCAGAGGATTCGT+TGG | 0.560194 | 1.2:-58543963 | None:intergenic |
GAGTTTCATGCTTATGTGCA+TGG | 0.564136 | 1.2:+58543673 | MS.gene066052:CDS |
CTGGATTTGTATCTAGAACA+TGG | 0.570926 | 1.2:+58543479 | MS.gene066052:CDS |
TTGATGACAGGTGGGTCGAT+CGG | 0.573116 | 1.2:+58544347 | MS.gene066052:intron |
CTTTGAAGATGGATACTGAA+AGG | 0.574758 | 1.2:+58543023 | None:intergenic |
TATGAATGCTGTTCAGAGCA+TGG | 0.576032 | 1.2:-58544389 | None:intergenic |
CGCATGTGCGTGATCTGCGT+TGG | 0.594208 | 1.2:-58543857 | None:intergenic |
CTTCCACAGATGGTTTGCAG+AGG | 0.599046 | 1.2:-58543972 | None:intergenic |
AATTCTAATAGCAGCCTCAA+AGG | 0.600461 | 1.2:-58543995 | None:intergenic |
GCATGTCGCAAGAACATACA+AGG | 0.614967 | 1.2:+58543248 | MS.gene066052:CDS |
ATTGTCAAATTCGTAGCCAA+GGG | 0.618916 | 1.2:-58543647 | None:intergenic |
AGTGTTAGAAATGTTGCAAG+CGG | 0.624326 | 1.2:+58544192 | MS.gene066052:CDS |
GCTGAGGCATGGAAAGCAGA+AGG | 0.639829 | 1.2:-58543741 | None:intergenic |
CAACGCAGATCACGCACATG+CGG | 0.653925 | 1.2:+58543858 | MS.gene066052:CDS |
AGCATTACCTGAAATATGGG+AGG | 0.676770 | 1.2:+58544422 | MS.gene066052:CDS |
CAAAACTTATGCATGGACCG+TGG | 0.699924 | 1.2:-58544493 | None:intergenic |
TATATCTTACAATAACAGTG+TGG | 0.713748 | 1.2:-58544230 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAAAGTAAATATTGATTA+TGG | + | chr1.2:58543159-58543178 | MS.gene066052:intron | 10.0% |
!!! | AAAGAATATTTTGAGTATTA+CGG | - | chr1.2:58543826-58543845 | None:intergenic | 15.0% |
!! | TAATAATCTTGCATGAATAT+TGG | + | chr1.2:58543091-58543110 | MS.gene066052:intron | 20.0% |
!! | TTCTATATGAAAATTTGAAG+AGG | - | chr1.2:58543134-58543153 | None:intergenic | 20.0% |
!!! | TCTTCAAATTTTCATATAGA+AGG | + | chr1.2:58543133-58543152 | MS.gene066052:intron | 20.0% |
! | AAACAAGATTGATCAACTAT+AGG | - | chr1.2:58543402-58543421 | None:intergenic | 25.0% |
! | ATATGAAATAATCTGAACAC+TGG | - | chr1.2:58543312-58543331 | None:intergenic | 25.0% |
! | TATATCTTACAATAACAGTG+TGG | - | chr1.2:58544233-58544252 | None:intergenic | 25.0% |
!! | ATCAATCTTACTGTTTTCTT+TGG | - | chr1.2:58544033-58544052 | None:intergenic | 25.0% |
AGTAAGTCAATAGAAAACTG+TGG | - | chr1.2:58543547-58543566 | None:intergenic | 30.0% | |
CTTGTTTACAGAGTATATGT+TGG | + | chr1.2:58543415-58543434 | MS.gene066052:intron | 30.0% | |
TACTTACCTAAAAAGTGACA+TGG | + | chr1.2:58544053-58544072 | MS.gene066052:intron | 30.0% | |
TTAAGTCTTAATTTCCTGTC+AGG | + | chr1.2:58543624-58543643 | MS.gene066052:intron | 30.0% | |
TTCTATCTATGCATCATATG+TGG | + | chr1.2:58544256-58544275 | MS.gene066052:intron | 30.0% | |
! | AGTAACAACATATTGATGAC+AGG | + | chr1.2:58544335-58544354 | MS.gene066052:intron | 30.0% |
! | GAGAGATTACTTCTTTTATG+TGG | + | chr1.2:58544075-58544094 | MS.gene066052:intron | 30.0% |
!! | AGAAGCATTACCTGAAATAT+GGG | + | chr1.2:58544419-58544438 | MS.gene066052:CDS | 30.0% |
!!! | CTATAGATTTTTTTACCCCT+AGG | + | chr1.2:58544104-58544123 | MS.gene066052:intron | 30.0% |
!!! | GCACTCATAGTTTATTTTAG+AGG | + | chr1.2:58543276-58543295 | MS.gene066052:intron | 30.0% |
AAATTGATCCCTAAGCTCAA+TGG | - | chr1.2:58543227-58543246 | None:intergenic | 35.0% | |
AATTCTAATAGCAGCCTCAA+AGG | - | chr1.2:58543998-58544017 | None:intergenic | 35.0% | |
AATTGATCCCTAAGCTCAAT+GGG | - | chr1.2:58543226-58543245 | None:intergenic | 35.0% | |
AGTGTTAGAAATGTTGCAAG+CGG | + | chr1.2:58544192-58544211 | MS.gene066052:CDS | 35.0% | |
ATTCCAAGAGTTTCAAACCT+AGG | - | chr1.2:58544124-58544143 | None:intergenic | 35.0% | |
ATTGAGCTTAGGGATCAATT+TGG | + | chr1.2:58543226-58543245 | MS.gene066052:CDS | 35.0% | |
ATTGTCAAATTCGTAGCCAA+GGG | - | chr1.2:58543650-58543669 | None:intergenic | 35.0% | |
GATGCTCTTAATGAACAAAC+TGG | - | chr1.2:58543804-58543823 | None:intergenic | 35.0% | |
GTAAAATCGTACGTGGAAAA+AGG | + | chr1.2:58543764-58543783 | MS.gene066052:intron | 35.0% | |
TACAAATCCAGACACATCTT+TGG | - | chr1.2:58543470-58543489 | None:intergenic | 35.0% | |
TATAGTACCAAAGATGTGTC+TGG | + | chr1.2:58543460-58543479 | MS.gene066052:CDS | 35.0% | |
TATCTGTTGTTACCAACATG+TGG | - | chr1.2:58543187-58543206 | None:intergenic | 35.0% | |
TTCCAAGAGTTTCAAACCTA+GGG | - | chr1.2:58544123-58544142 | None:intergenic | 35.0% | |
TTGATTATGGTTCCACATGT+TGG | + | chr1.2:58543172-58543191 | MS.gene066052:intron | 35.0% | |
! | AACAACATATTGATGACAGG+TGG | + | chr1.2:58544338-58544357 | MS.gene066052:intron | 35.0% |
! | ACAACATATTGATGACAGGT+GGG | + | chr1.2:58544339-58544358 | MS.gene066052:intron | 35.0% |
! | CTGGATTTGTATCTAGAACA+TGG | + | chr1.2:58543479-58543498 | MS.gene066052:CDS | 35.0% |
! | TCTAGAACATGGAACAACTA+TGG | + | chr1.2:58543490-58543509 | MS.gene066052:CDS | 35.0% |
!! | AAATACGAGTGCTTGCTTTT+TGG | + | chr1.2:58543058-58543077 | MS.gene066052:CDS | 35.0% |
!! | CATGTTGGTAACAACAGATA+TGG | + | chr1.2:58543187-58543206 | MS.gene066052:intron | 35.0% |
!! | GAGAAGCATTACCTGAAATA+TGG | + | chr1.2:58544418-58544437 | MS.gene066052:CDS | 35.0% |
!! | GAGATTGGATCATTTGTTGT+TGG | - | chr1.2:58544461-58544480 | None:intergenic | 35.0% |
!!! | ATCTCTCCATGTCACTTTTT+AGG | - | chr1.2:58544062-58544081 | None:intergenic | 35.0% |
!!! | TGCTTGCTTTTTGGTATGAA+TGG | + | chr1.2:58543067-58543086 | MS.gene066052:intron | 35.0% |
AACAACTATGGCAGGAATGA+AGG | + | chr1.2:58543502-58543521 | MS.gene066052:CDS | 40.0% | |
AGCATTACCTGAAATATGGG+AGG | + | chr1.2:58544422-58544441 | MS.gene066052:CDS | 40.0% | |
AGGTTCCTTAACACGAAATC+TGG | - | chr1.2:58543724-58543743 | None:intergenic | 40.0% | |
ATGGATACTGAAAGGATTGC+TGG | + | chr1.2:58543031-58543050 | MS.gene066052:CDS | 40.0% | |
CATTGTCAAATTCGTAGCCA+AGG | - | chr1.2:58543651-58543670 | None:intergenic | 40.0% | |
GAGTTTCATGCTTATGTGCA+TGG | + | chr1.2:58543673-58543692 | MS.gene066052:CDS | 40.0% | |
TATGAATGCTGTTCAGAGCA+TGG | - | chr1.2:58544392-58544411 | None:intergenic | 40.0% | |
TCCAAGAGTTTCAAACCTAG+GGG | - | chr1.2:58544122-58544141 | None:intergenic | 40.0% | |
TCTTCAACCTCCCATATTTC+AGG | - | chr1.2:58544432-58544451 | None:intergenic | 40.0% | |
TGAAGCCAGATTTCGTGTTA+AGG | + | chr1.2:58543716-58543735 | MS.gene066052:CDS | 40.0% | |
! | ATTCGTTGGTAGGAGTTGAT+AGG | - | chr1.2:58543952-58543971 | None:intergenic | 40.0% |
! | GGAATGAAGGTATGCAGATT+TGG | + | chr1.2:58543515-58543534 | MS.gene066052:intron | 40.0% |
! | TCTGGCTTCAGTTTCTCATA+TGG | - | chr1.2:58543706-58543725 | None:intergenic | 40.0% |
!! | TTCGTTGGTAGGAGTTGATA+GGG | - | chr1.2:58543951-58543970 | None:intergenic | 40.0% |
AATCCTCTGCAAACCATCTG+TGG | + | chr1.2:58543969-58543988 | MS.gene066052:CDS | 45.0% | |
ACTCTCTACCCATTGAGCTT+AGG | + | chr1.2:58543215-58543234 | MS.gene066052:CDS | 45.0% | |
CTCTCTACCCATTGAGCTTA+GGG | + | chr1.2:58543216-58543235 | MS.gene066052:CDS | 45.0% | |
GAACATGGAACAACTATGGC+AGG | + | chr1.2:58543494-58543513 | MS.gene066052:CDS | 45.0% | |
GCATGTCGCAAGAACATACA+AGG | + | chr1.2:58543248-58543267 | MS.gene066052:CDS | 45.0% | |
GGCTTGGAAGATTGCTTTGA+GGG | + | chr1.2:58543901-58543920 | MS.gene066052:CDS | 45.0% | |
TTAATTTCCTGTCAGGCCCT+TGG | + | chr1.2:58543631-58543650 | MS.gene066052:intron | 45.0% | |
TTTGCAGAGGATTCGTTGGT+AGG | - | chr1.2:58543962-58543981 | None:intergenic | 45.0% | |
! | ACCCCTAGGTTTGAAACTCT+TGG | + | chr1.2:58544118-58544137 | MS.gene066052:intron | 45.0% |
! | ATGGTTTGCAGAGGATTCGT+TGG | - | chr1.2:58543966-58543985 | None:intergenic | 45.0% |
! | TACGATTTTACGCTGAGGCA+TGG | - | chr1.2:58543755-58543774 | None:intergenic | 45.0% |
! | TGGCTTGGAAGATTGCTTTG+AGG | + | chr1.2:58543900-58543919 | MS.gene066052:CDS | 45.0% |
ACCATCTGTGGAAGCCTTTG+AGG | + | chr1.2:58543981-58544000 | MS.gene066052:CDS | 50.0% | |
ATCTCTTGCAGTCGAAGCCA+CGG | + | chr1.2:58544476-58544495 | MS.gene066052:CDS | 50.0% | |
ATGCGGTTGAAGTTCTCAGC+AGG | + | chr1.2:58543875-58543894 | MS.gene066052:CDS | 50.0% | |
CCTCAGCGTAAAATCGTACG+TGG | + | chr1.2:58543757-58543776 | MS.gene066052:intron | 50.0% | |
GTTGAAGTTCTCAGCAGGCT+TGG | + | chr1.2:58543880-58543899 | MS.gene066052:CDS | 50.0% | |
GTTGCAAGCGGAAAAGTAGC+TGG | + | chr1.2:58544204-58544223 | MS.gene066052:CDS | 50.0% | |
TGGCTTCGACTGCAAGAGAT+TGG | - | chr1.2:58544476-58544495 | None:intergenic | 50.0% | |
! | CCACGTACGATTTTACGCTG+AGG | - | chr1.2:58543760-58543779 | None:intergenic | 50.0% |
! | CTTCCACAGATGGTTTGCAG+AGG | - | chr1.2:58543975-58543994 | None:intergenic | 50.0% |
! | TTGATGACAGGTGGGTCGAT+CGG | + | chr1.2:58544347-58544366 | MS.gene066052:intron | 50.0% |
AGTTCTCAGCAGGCTTGGCT+TGG | + | chr1.2:58543885-58543904 | MS.gene066052:CDS | 55.0% | |
CAACGCAGATCACGCACATG+CGG | + | chr1.2:58543858-58543877 | MS.gene066052:CDS | 55.0% | |
GCCTCAAAGGCTTCCACAGA+TGG | - | chr1.2:58543985-58544004 | None:intergenic | 55.0% | |
GCTGAGGCATGGAAAGCAGA+AGG | - | chr1.2:58543744-58543763 | None:intergenic | 55.0% | |
GGTCGATCGGATTTAGTGCC+TGG | + | chr1.2:58544360-58544379 | MS.gene066052:CDS | 55.0% | |
TTCAGAGCATGGTCAGCACC+AGG | - | chr1.2:58544381-58544400 | None:intergenic | 55.0% | |
CGCATGTGCGTGATCTGCGT+TGG | - | chr1.2:58543860-58543879 | None:intergenic | 60.0% | |
TTCGTAGCCAAGGGCCTGAC+AGG | - | chr1.2:58543641-58543660 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 58543031 | 58544509 | 58543031 | ID=MS.gene066052 |
chr1.2 | mRNA | 58543031 | 58544509 | 58543031 | ID=MS.gene066052.t1;Parent=MS.gene066052 |
chr1.2 | exon | 58543031 | 58543079 | 58543031 | ID=MS.gene066052.t1.exon1;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58543031 | 58543079 | 58543031 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
chr1.2 | exon | 58543204 | 58543269 | 58543204 | ID=MS.gene066052.t1.exon2;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58543204 | 58543269 | 58543204 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
chr1.2 | exon | 58543426 | 58543523 | 58543426 | ID=MS.gene066052.t1.exon3;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58543426 | 58543523 | 58543426 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
chr1.2 | exon | 58543646 | 58543771 | 58543646 | ID=MS.gene066052.t1.exon4;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58543646 | 58543771 | 58543646 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
chr1.2 | exon | 58543850 | 58544041 | 58543850 | ID=MS.gene066052.t1.exon5;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58543850 | 58544041 | 58543850 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
chr1.2 | exon | 58544177 | 58544242 | 58544177 | ID=MS.gene066052.t1.exon6;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58544177 | 58544242 | 58544177 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
chr1.2 | exon | 58544357 | 58544509 | 58544357 | ID=MS.gene066052.t1.exon7;Parent=MS.gene066052.t1 |
chr1.2 | CDS | 58544357 | 58544509 | 58544357 | ID=cds.MS.gene066052.t1;Parent=MS.gene066052.t1 |
Gene Sequence |
Protein sequence |