AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054010.t1 MTR_2g088470 89.549 421 8 4 2 386 1 421 0.0 759
MS.gene054010.t1 MTR_4g047800 75.952 420 59 9 2 386 1 413 0.0 622
MS.gene054010.t1 MTR_8g432540 45.631 412 172 9 27 386 77 488 2.08e-108 337
MS.gene054010.t1 MTR_7g076080 46.819 393 147 11 42 386 83 461 3.32e-107 332
MS.gene054010.t1 MTR_1g101280 40.865 416 178 9 35 386 21 432 2.43e-97 306
MS.gene054010.t1 MTR_6g477820 43.432 373 172 6 53 386 25 397 2.45e-97 305
MS.gene054010.t1 MTR_5g029320 41.732 381 170 8 39 374 69 442 1.39e-95 303
MS.gene054010.t1 MTR_5g005600 44.844 417 169 13 14 386 6 405 1.71e-90 287
MS.gene054010.t1 MTR_0198s0030 41.463 369 172 10 39 363 37 405 6.91e-87 279
MS.gene054010.t1 MTR_2g101720 41.954 348 167 8 61 386 143 477 5.02e-82 267
MS.gene054010.t1 MTR_7g427710 39.045 356 155 9 57 386 16 335 4.53e-68 226
MS.gene054010.t1 MTR_2g030570 31.956 363 210 10 56 386 23 380 6.95e-54 189
MS.gene054010.t1 MTR_7g427700 36.120 299 133 7 57 332 16 279 2.34e-50 175
MS.gene054010.t1 MTR_2g030600 32.033 359 213 10 56 386 23 378 7.61e-50 178
MS.gene054010.t1 MTR_2g030660 31.073 354 206 9 50 386 8 340 6.71e-43 159
MS.gene054010.t1 MTR_1g105420 42.135 178 81 4 107 270 1 170 9.07e-35 127
MS.gene054010.t1 MTR_2g083350 41.830 153 86 1 237 386 69 221 1.90e-31 125
MS.gene054010.t1 MTR_7g427690 36.752 234 102 7 174 386 28 236 1.94e-31 124
MS.gene054010.t1 MTR_5g046040 38.690 168 95 3 53 214 29 194 2.63e-29 117
MS.gene054010.t1 MTR_7g027265 45.763 118 59 1 59 171 19 136 4.65e-29 110
MS.gene054010.t1 MTR_2g083330 39.216 153 86 2 237 386 65 213 5.61e-27 112
MS.gene054010.t1 MTR_7g027605 48.837 86 40 2 304 386 3 87 2.71e-17 77.0
MS.gene054010.t1 MTR_7g427670 39.252 107 53 2 94 200 20 114 4.06e-15 71.6
MS.gene054010.t1 MTR_2g451350 29.771 131 80 2 239 357 1 131 7.94e-14 68.6
MS.gene054010.t1 MTR_1g105425 42.222 90 44 3 17 103 68 152 1.45e-12 65.5
MS.gene054010.t1 MTR_3g109800 24.551 334 182 12 60 378 20 298 1.94e-12 69.3
MS.gene054010.t1 MTR_3g109800 24.551 334 182 12 60 378 20 298 2.13e-12 69.3
MS.gene054010.t1 MTR_3g109800 24.551 334 182 12 60 378 20 298 2.56e-12 68.9
MS.gene054010.t1 MTR_6g027290 26.866 134 92 2 60 187 28 161 4.27e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054010.t1 AT4G04890 64.387 424 105 11 2 386 1 417 0.0 529
MS.gene054010.t1 AT4G04890 64.387 424 105 11 2 386 1 417 0.0 529
MS.gene054010.t1 AT4G21750 63.048 433 104 10 2 386 1 425 0.0 522
MS.gene054010.t1 AT4G21750 63.048 433 104 10 2 386 1 425 0.0 522
MS.gene054010.t1 AT4G21750 63.048 433 104 10 2 386 1 425 0.0 522
MS.gene054010.t1 AT4G21750 63.048 433 104 10 2 386 1 425 0.0 522
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.65e-174 499
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 3.11e-173 501
MS.gene054010.t1 AT1G05230 63.876 418 109 7 2 386 1 409 4.62e-173 500
MS.gene054010.t1 AT2G32370 51.330 376 154 7 39 386 42 416 5.59e-118 359
MS.gene054010.t1 AT4G00730 46.809 376 153 9 48 386 122 487 3.62e-103 316
MS.gene054010.t1 AT4G00730 46.809 376 153 9 48 386 122 487 1.46e-100 316
MS.gene054010.t1 AT3G61150 44.359 390 166 8 46 386 95 482 1.51e-100 316
MS.gene054010.t1 AT1G73360 42.588 371 170 6 57 386 32 400 1.15e-90 288
MS.gene054010.t1 AT5G52170 43.258 356 168 6 35 381 31 361 2.85e-88 281
MS.gene054010.t1 AT5G52170 43.258 356 168 6 35 381 31 361 2.85e-88 281
MS.gene054010.t1 AT5G52170 42.978 356 169 6 35 381 31 361 3.46e-88 281
MS.gene054010.t1 AT5G46880 41.646 401 164 12 29 373 94 480 2.22e-83 271
MS.gene054010.t1 AT5G46880 41.646 401 164 12 29 373 94 480 2.22e-83 271
MS.gene054010.t1 AT5G46880 41.646 401 164 12 29 373 94 480 2.22e-83 271
MS.gene054010.t1 AT1G17920 42.473 372 180 6 47 386 11 380 1.02e-82 266
MS.gene054010.t1 AT1G17920 42.473 372 180 6 47 386 11 380 1.02e-82 266
MS.gene054010.t1 AT1G79840 39.884 346 160 10 45 370 92 409 3.92e-72 234
MS.gene054010.t1 AT1G79840 40.173 346 159 11 45 370 92 409 2.25e-71 235
MS.gene054010.t1 AT1G79840 39.884 346 160 10 45 370 34 351 7.28e-71 235
MS.gene054010.t1 AT1G79840 39.884 346 160 10 45 370 34 351 7.28e-71 235
MS.gene054010.t1 AT1G79840 39.884 346 160 10 45 370 92 409 1.83e-70 235
MS.gene054010.t1 AT1G79840 39.884 346 160 10 45 370 121 438 4.04e-70 234
MS.gene054010.t1 AT4G17710 39.510 367 166 12 43 386 73 406 1.28e-68 229
MS.gene054010.t1 AT3G03260 35.833 360 195 10 58 386 24 378 3.98e-56 193
MS.gene054010.t1 AT3G03260 35.833 360 195 10 58 386 24 378 6.37e-55 192
MS.gene054010.t1 AT4G25530 34.722 360 204 11 48 386 31 380 2.71e-49 177
MS.gene054010.t1 AT5G17320 30.075 399 215 12 19 369 1 383 9.90e-45 164
MS.gene054010.t1 AT1G34650 30.423 355 197 8 64 369 23 376 2.91e-40 152

Find 99 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTACGCTTCCATTTCT+TGG 0.138519 2.4:-12469415 None:intergenic
ATATTCCTCTTCATTGAGTA+TGG 0.259965 2.4:-12470757 None:intergenic
GGCAGTAGTGGATGTTTCTT+TGG 0.266653 2.4:+12471386 MS.gene054010:CDS
TCCTTCCTTTGCTTGTCATC+AGG 0.267823 2.4:-12469603 None:intergenic
AATTCATCTTCACGGATTCT+TGG 0.284298 2.4:-12469274 None:intergenic
AAGGAACTGAGCAGAGAGTT+AGG 0.301450 2.4:+12469621 MS.gene054010:CDS
AGCAACAGAAGGCCTTCTTC+TGG 0.306704 2.4:-12471439 None:intergenic
AATCAAGAAGCTGCTAATTC+AGG 0.336353 2.4:+12469332 MS.gene054010:intron
TGTCCAGCTTCCATTAGATT+TGG 0.355568 2.4:-12469187 None:intergenic
TTCTCTAAACCTCATGTTAT+CGG 0.361729 2.4:-12469849 None:intergenic
CCTTCCTTTGCTTGTCATCA+GGG 0.367415 2.4:-12469602 None:intergenic
GTGCTATCAACTGGGGTGGC+AGG 0.373210 2.4:+12471109 MS.gene054010:CDS
CACTGGCTTTCCTACGTACT+TGG 0.377299 2.4:-12470485 None:intergenic
CTGGATCTGGCAGAAGGACT+AGG 0.382500 2.4:-12471420 None:intergenic
GAATGTATACCTCTTCTCTA+AGG 0.384454 2.4:-12469967 None:intergenic
ACACTGGAAGTGCTATCAAC+TGG 0.386707 2.4:+12471100 MS.gene054010:CDS
ACTCATTGGAATGGCACAAA+TGG 0.397042 2.4:+12470698 MS.gene054010:CDS
GCAGTTGGTCCACCACAATT+AGG 0.400312 2.4:-12469893 None:intergenic
ACTGCTAGCTCAATTATCAT+TGG 0.404803 2.4:-12470660 None:intergenic
CTTTGGTTGCCTACACTTGA+AGG 0.408059 2.4:+12470729 MS.gene054010:CDS
CTTTGCTTGTCATCAGGGTG+TGG 0.418881 2.4:-12469597 None:intergenic
CAGCTTCCATTAGATTTGGC+TGG 0.429412 2.4:-12469183 None:intergenic
AATGTTCCAGCCAAATCTAA+TGG 0.438842 2.4:+12469177 MS.gene054010:CDS
AGCAACATGCTGATGGAACT+TGG 0.445791 2.4:+12471364 MS.gene054010:CDS
CCTCTAGAACTCGGCATTGG+TGG 0.447065 2.4:+12470550 MS.gene054010:CDS
AGAAGGCCTTCTTCTGGATC+TGG 0.453379 2.4:-12471433 None:intergenic
ACAGCATCAGATCCAAGAAA+TGG 0.457226 2.4:+12469403 MS.gene054010:CDS
TGAGCTAGCAGTTGCTGCTA+TGG 0.464050 2.4:+12470671 MS.gene054010:CDS
CTCTCTCTAGTTGGCACAAG+TGG 0.472336 2.4:-12471321 None:intergenic
GGAGGAGATATGTATGGAGC+TGG 0.474886 2.4:+12470594 MS.gene054010:intron
TCAATGAAGAGGAATATGTT+AGG 0.476700 2.4:+12470763 MS.gene054010:CDS
GGGCGAGGAGGAACCGATGA+AGG 0.476736 2.4:-12470529 None:intergenic
ACAAAATAACTCTCTCTAGT+TGG 0.477153 2.4:-12471330 None:intergenic
AAACCAAAACTTCACTGTAA+TGG 0.478496 2.4:-12469651 None:intergenic
TGTCGAATAATTCATCTTCA+CGG 0.483352 2.4:-12469282 None:intergenic
TCCTACGTACTTGGCAGCAA+TGG 0.502677 2.4:-12470476 None:intergenic
CGCCCTCTAGAACTCGGCAT+TGG 0.503902 2.4:+12470547 MS.gene054010:CDS
CACTGGAAGTGCTATCAACT+GGG 0.506183 2.4:+12471101 MS.gene054010:CDS
GGCGAGGAGGAACCGATGAA+GGG 0.507726 2.4:-12470528 None:intergenic
CTCATTGGAATGGCACAAAT+GGG 0.511283 2.4:+12470699 MS.gene054010:CDS
CAGAGAAAACTGTGGACCAT+TGG 0.512102 2.4:-12471057 None:intergenic
TGCTATCAACTGGGGTGGCA+GGG 0.518257 2.4:+12471110 MS.gene054010:CDS
AGGAACTGAGCAGAGAGTTA+GGG 0.519123 2.4:+12469622 MS.gene054010:CDS
GCTGCTATGGAGGAACTCAT+TGG 0.520147 2.4:+12470684 MS.gene054010:CDS
TTGTGGTTTATAAGAACCAA+TGG 0.522609 2.4:+12471041 MS.gene054010:intron
TCCACTACTCTCCCCTTCAT+CGG 0.525289 2.4:+12470516 MS.gene054010:CDS
CAGCCAAATCTAATGGAAGC+TGG 0.529949 2.4:+12469184 MS.gene054010:CDS
GTATACCTCTTCTCTAAGGC+GGG 0.534397 2.4:-12469963 None:intergenic
CACAAATGGGTGATCCACTT+TGG 0.540052 2.4:+12470712 MS.gene054010:CDS
GCGAGGAGGAACCGATGAAG+GGG 0.541185 2.4:-12470527 None:intergenic
GACATTTCTCCGATGGCAGT+TGG 0.544696 2.4:-12469908 None:intergenic
AAATTCCCGCCTTAGAGAAG+AGG 0.547209 2.4:+12469958 MS.gene054010:CDS
CTAGTTGGCACAAGTGGTGA+AGG 0.548358 2.4:-12471315 None:intergenic
GCTTCTTGTCCTAATTGTGG+TGG 0.548941 2.4:+12469884 MS.gene054010:CDS
GGAATGGGAGGAGATATGTA+TGG 0.550014 2.4:+12470588 MS.gene054010:intron
CCACCAATGCCGAGTTCTAG+AGG 0.555033 2.4:-12470550 None:intergenic
ATCAAACGACATTTCTCCGA+TGG 0.559536 2.4:-12469915 None:intergenic
CTTCTGCCAGATCCAGAAGA+AGG 0.560942 2.4:+12471427 MS.gene054010:CDS
CTTCTTCTGGATCTGGCAGA+AGG 0.561436 2.4:-12471426 None:intergenic
TATTGTAAGCAACATGCTGA+TGG 0.566221 2.4:+12471357 MS.gene054010:CDS
TGGATCTGGCAGAAGGACTA+GGG 0.567829 2.4:-12471419 None:intergenic
ATGCCGAGTTCTAGAGGGCG+AGG 0.568671 2.4:-12470544 None:intergenic
TTCTTGAATTAAGCAACAGA+AGG 0.569870 2.4:-12471450 None:intergenic
TGTGGTGGACCAACTGCCAT+CGG 0.570061 2.4:+12469899 MS.gene054010:CDS
GATCTTCTTAGATCAATAAG+TGG 0.572048 2.4:+12470618 MS.gene054010:CDS
ATTGGTTTATCAGCTTCAGT+AGG 0.576989 2.4:-12470642 None:intergenic
TAACCTTGTTGAGATTCTCA+TGG 0.576995 2.4:+12470871 MS.gene054010:CDS
ACCGATGAAGGGGAGAGTAG+TGG 0.579805 2.4:-12470517 None:intergenic
CCTCCTCGCCCTCTAGAACT+CGG 0.581323 2.4:+12470541 MS.gene054010:CDS
TGTTGAGATTCTCATGGATG+TGG 0.587472 2.4:+12470877 MS.gene054010:CDS
CGTTTGATGAACATCACTTG+AGG 0.589246 2.4:+12469930 MS.gene054010:CDS
AATGCTTCTTGTCCTAATTG+TGG 0.590261 2.4:+12469881 MS.gene054010:CDS
GGATCTGATGCTGTGTATGA+CGG 0.590628 2.4:-12469394 None:intergenic
CCCTGATGACAAGCAAAGGA+AGG 0.591678 2.4:+12469602 MS.gene054010:CDS
AGTAGTGGATAGCTCACCAC+TGG 0.592239 2.4:-12470502 None:intergenic
GCTAGCAGTTGCTGCTATGG+AGG 0.593019 2.4:+12470674 MS.gene054010:CDS
TGTATACCTCTTCTCTAAGG+CGG 0.598180 2.4:-12469964 None:intergenic
GCAACATGCTGATGGAACTT+GGG 0.599510 2.4:+12471365 MS.gene054010:CDS
ATGGAACCTCCTTCAAGTGT+AGG 0.599518 2.4:-12470738 None:intergenic
TGTCTCAAGAGCAATGACAC+TGG 0.606529 2.4:+12471084 MS.gene054010:CDS
CACCAATGCCGAGTTCTAGA+GGG 0.615823 2.4:-12470549 None:intergenic
AACTTCGTGCCGATAACATG+AGG 0.617798 2.4:+12469840 MS.gene054010:CDS
CACACCCTGATGACAAGCAA+AGG 0.619885 2.4:+12469598 MS.gene054010:CDS
AGGTTCCATACTCAATGAAG+AGG 0.621981 2.4:+12470752 MS.gene054010:CDS
TATGGAGGAACTCATTGGAA+TGG 0.622262 2.4:+12470689 MS.gene054010:CDS
TGATGGAACTTGGGCAGTAG+TGG 0.623796 2.4:+12471374 MS.gene054010:CDS
GTTTGCAGACTCAACAGGAG+AGG 0.625915 2.4:+12469783 MS.gene054010:CDS
TAACGTTTCTTCTTAGCACG+AGG 0.632532 2.4:-12469368 None:intergenic
GGAAGTGCTATCAACTGGGG+TGG 0.632566 2.4:+12471105 MS.gene054010:CDS
TCAAGTGTAGGCAACCAAAG+TGG 0.640121 2.4:-12470726 None:intergenic
CTACAATGGTGCATTACAAG+TGG 0.640429 2.4:+12471135 MS.gene054010:CDS
GGGGTGGCAGGGAACTACAA+TGG 0.649866 2.4:+12471121 MS.gene054010:CDS
TGGTTGCCTACACTTGAAGG+AGG 0.652894 2.4:+12470732 MS.gene054010:CDS
CATCCATGAGAATCTCAACA+AGG 0.674971 2.4:-12470874 None:intergenic
GCCATTGCTGCCAAGTACGT+AGG 0.683580 2.4:+12470475 MS.gene054010:CDS
CCGAGTTCTAGAGGGCGAGG+AGG 0.684847 2.4:-12470541 None:intergenic
CAAGTACGTAGGAAAGCCAG+TGG 0.711066 2.4:+12470486 MS.gene054010:CDS
GACAATGCCAGAGAAAACTG+TGG 0.735059 2.4:-12471065 None:intergenic
ACTGGAAGTGCTATCAACTG+GGG 0.765115 2.4:+12471102 MS.gene054010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGATTTTTTTATTTTATTTT+TGG + chr2.4:12469721-12469740 MS.gene054010:intron 10.0%
!!! TTTTGTTAAATTAATTTATG+TGG + chr2.4:12469544-12469563 MS.gene054010:intron 10.0%
!!! ATTTGATTTTATTAATTTGG+AGG + chr2.4:12469700-12469719 MS.gene054010:intron 15.0%
!!! ATTTTAACCTTCTTTAATTT+TGG + chr2.4:12470424-12470443 MS.gene054010:intron 15.0%
!!! CATAGAATGATATTTTTTTT+TGG + chr2.4:12469761-12469780 MS.gene054010:intron 15.0%
!!! GGTATTTGATTTTATTAATT+TGG + chr2.4:12469697-12469716 MS.gene054010:intron 15.0%
!! ATTAACACCAAAATTAAAGA+AGG - chr2.4:12470434-12470453 None:intergenic 20.0%
!!! TTGTTTGTTTAGGTTTTTTA+AGG + chr2.4:12469569-12469588 MS.gene054010:intron 20.0%
!!! TTTGACTGTTTTTTCTTTTT+TGG + chr2.4:12469519-12469538 MS.gene054010:intron 20.0%
! ATCGAAGCCTATATATTTAT+GGG + chr2.4:12470145-12470164 MS.gene054010:intron 25.0%
! GATAGAGATAGAATAACAAT+AGG - chr2.4:12470373-12470392 None:intergenic 25.0%
! TATGAGATTGAAATGAACAA+TGG + chr2.4:12470181-12470200 MS.gene054010:intron 25.0%
!! GATTGATGCGATATTAATTT+TGG - chr2.4:12470224-12470243 None:intergenic 25.0%
!! GTGTTAATTTTCAGATTGAT+AGG + chr2.4:12470446-12470465 MS.gene054010:intron 25.0%
!!! TTATGTGGTTTTGTTTGTTT+AGG + chr2.4:12469559-12469578 MS.gene054010:intron 25.0%
!!! TTTTTGGTTGAAAAATGAAG+AGG + chr2.4:12469737-12469756 MS.gene054010:intron 25.0%
AAACCAAAACTTCACTGTAA+TGG - chr2.4:12469654-12469673 None:intergenic 30.0%
ACAAAATAACTCTCTCTAGT+TGG - chr2.4:12471333-12471352 None:intergenic 30.0%
ATATTCCTCTTCATTGAGTA+TGG - chr2.4:12470760-12470779 None:intergenic 30.0%
CAGAAATTACACCAAGTTTA+TGG + chr2.4:12470002-12470021 MS.gene054010:intron 30.0%
GATCGAAGCCTATATATTTA+TGG + chr2.4:12470144-12470163 MS.gene054010:intron 30.0%
GATCTTCTTAGATCAATAAG+TGG + chr2.4:12470618-12470637 MS.gene054010:CDS 30.0%
TAAAACATACATCAAGGTCT+TGG + chr2.4:12470077-12470096 MS.gene054010:intron 30.0%
TCAAACGCCCATAAATATAT+AGG - chr2.4:12470155-12470174 None:intergenic 30.0%
TCAATGAAGAGGAATATGTT+AGG + chr2.4:12470763-12470782 MS.gene054010:CDS 30.0%
TGTCGAATAATTCATCTTCA+CGG - chr2.4:12469285-12469304 None:intergenic 30.0%
TTCTCTAAACCTCATGTTAT+CGG - chr2.4:12469852-12469871 None:intergenic 30.0%
TTGTGGTTTATAAGAACCAA+TGG + chr2.4:12471041-12471060 MS.gene054010:intron 30.0%
!! TTGTTTTGTGTCATGTCAAA+TGG - chr2.4:12469229-12469248 None:intergenic 30.0%
!!! ATGTATGTTTTAACTGCGTT+TGG - chr2.4:12470069-12470088 None:intergenic 30.0%
!!! TGACACTATTTTTGTTCTTG+TGG + chr2.4:12471024-12471043 MS.gene054010:intron 30.0%
AATCAAGAAGCTGCTAATTC+AGG + chr2.4:12469332-12469351 MS.gene054010:intron 35.0%
AATGCTTCTTGTCCTAATTG+TGG + chr2.4:12469881-12469900 MS.gene054010:CDS 35.0%
AATGTTCCAGCCAAATCTAA+TGG + chr2.4:12469177-12469196 MS.gene054010:CDS 35.0%
AATTCATCTTCACGGATTCT+TGG - chr2.4:12469277-12469296 None:intergenic 35.0%
ACTGCTAGCTCAATTATCAT+TGG - chr2.4:12470663-12470682 None:intergenic 35.0%
CGCAGTTAAAACATACATCA+AGG + chr2.4:12470071-12470090 MS.gene054010:intron 35.0%
GAACAAACGTACTCAAATGA+AGG + chr2.4:12469676-12469695 MS.gene054010:intron 35.0%
GAATGTATACCTCTTCTCTA+AGG - chr2.4:12469970-12469989 None:intergenic 35.0%
TAACCTTGTTGAGATTCTCA+TGG + chr2.4:12470871-12470890 MS.gene054010:CDS 35.0%
TATCAATCGCACCATAAACT+TGG - chr2.4:12470016-12470035 None:intergenic 35.0%
TATTGTAAGCAACATGCTGA+TGG + chr2.4:12471357-12471376 MS.gene054010:CDS 35.0%
! ATTGGTTTATCAGCTTCAGT+AGG - chr2.4:12470645-12470664 None:intergenic 35.0%
! TATGTTAGGTCTTTTCCTAG+AGG + chr2.4:12470777-12470796 MS.gene054010:CDS 35.0%
!! CTAGAGAGAGTTATTTTGTG+AGG + chr2.4:12471334-12471353 MS.gene054010:CDS 35.0%
!! TGCGATATTAATTTTGGTCG+AGG - chr2.4:12470218-12470237 None:intergenic 35.0%
ACAGCATCAGATCCAAGAAA+TGG + chr2.4:12469403-12469422 MS.gene054010:CDS 40.0%
ACTCATTGGAATGGCACAAA+TGG + chr2.4:12470698-12470717 MS.gene054010:CDS 40.0%
AGGTTCCATACTCAATGAAG+AGG + chr2.4:12470752-12470771 MS.gene054010:CDS 40.0%
ATCAAACGACATTTCTCCGA+TGG - chr2.4:12469918-12469937 None:intergenic 40.0%
CATCCATGAGAATCTCAACA+AGG - chr2.4:12470877-12470896 None:intergenic 40.0%
CGTTTGATGAACATCACTTG+AGG + chr2.4:12469930-12469949 MS.gene054010:CDS 40.0%
CTACAATGGTGCATTACAAG+TGG + chr2.4:12471135-12471154 MS.gene054010:CDS 40.0%
CTCATTGGAATGGCACAAAT+GGG + chr2.4:12470699-12470718 MS.gene054010:CDS 40.0%
CTTCTTACGCTTCCATTTCT+TGG - chr2.4:12469418-12469437 None:intergenic 40.0%
TAACGTTTCTTCTTAGCACG+AGG - chr2.4:12469371-12469390 None:intergenic 40.0%
TATGGAGGAACTCATTGGAA+TGG + chr2.4:12470689-12470708 MS.gene054010:CDS 40.0%
TCGACAGTGCTACAAAAATC+TGG + chr2.4:12469299-12469318 MS.gene054010:intron 40.0%
TGTCCAGCTTCCATTAGATT+TGG - chr2.4:12469190-12469209 None:intergenic 40.0%
TGTTGAGATTCTCATGGATG+TGG + chr2.4:12470877-12470896 MS.gene054010:CDS 40.0%
! AGGTCTTTTCCTAGAGGAAT+TGG + chr2.4:12470783-12470802 MS.gene054010:CDS 40.0%
! GAGCCATTACAGTGAAGTTT+TGG + chr2.4:12469648-12469667 MS.gene054010:intron 40.0%
! TGTATACCTCTTCTCTAAGG+CGG - chr2.4:12469967-12469986 None:intergenic 40.0%
!! ACACTTAAACCAGCTGGTTT+TGG - chr2.4:12470810-12470829 None:intergenic 40.0%
!!! TTTTGGTTTGCAGACTCAAC+AGG + chr2.4:12469778-12469797 MS.gene054010:CDS 40.0%
AAATTCCCGCCTTAGAGAAG+AGG + chr2.4:12469958-12469977 MS.gene054010:CDS 45.0%
AAGGAACTGAGCAGAGAGTT+AGG + chr2.4:12469621-12469640 MS.gene054010:CDS 45.0%
AGCAACATGCTGATGGAACT+TGG + chr2.4:12471364-12471383 MS.gene054010:CDS 45.0%
AGCTTCACACTTAAACCAGC+TGG - chr2.4:12470816-12470835 None:intergenic 45.0%
AGGAACTGAGCAGAGAGTTA+GGG + chr2.4:12469622-12469641 MS.gene054010:CDS 45.0%
ATCCCCTACAACAGTTGCAA+CGG + chr2.4:12470100-12470119 MS.gene054010:intron 45.0%
ATGGAACCTCCTTCAAGTGT+AGG - chr2.4:12470741-12470760 None:intergenic 45.0%
CACAAATGGGTGATCCACTT+TGG + chr2.4:12470712-12470731 MS.gene054010:CDS 45.0%
CAGAGAAAACTGTGGACCAT+TGG - chr2.4:12471060-12471079 None:intergenic 45.0%
CAGCCAAATCTAATGGAAGC+TGG + chr2.4:12469184-12469203 MS.gene054010:CDS 45.0%
CAGCTTCCATTAGATTTGGC+TGG - chr2.4:12469186-12469205 None:intergenic 45.0%
CCTTCCTTTGCTTGTCATCA+GGG - chr2.4:12469605-12469624 None:intergenic 45.0%
CTTTGGTTGCCTACACTTGA+AGG + chr2.4:12470729-12470748 MS.gene054010:CDS 45.0%
GACAATGCCAGAGAAAACTG+TGG - chr2.4:12471068-12471087 None:intergenic 45.0%
GCAACATGCTGATGGAACTT+GGG + chr2.4:12471365-12471384 MS.gene054010:CDS 45.0%
GCTTCTTGTCCTAATTGTGG+TGG + chr2.4:12469884-12469903 MS.gene054010:CDS 45.0%
GGAATGGGAGGAGATATGTA+TGG + chr2.4:12470588-12470607 MS.gene054010:intron 45.0%
GGATCTGATGCTGTGTATGA+CGG - chr2.4:12469397-12469416 None:intergenic 45.0%
TACATATCTCCTCCCATTCC+TGG - chr2.4:12470588-12470607 None:intergenic 45.0%
TCAAGTGTAGGCAACCAAAG+TGG - chr2.4:12470729-12470748 None:intergenic 45.0%
TCCTTCCTTTGCTTGTCATC+AGG - chr2.4:12469606-12469625 None:intergenic 45.0%
TGTCTCAAGAGCAATGACAC+TGG + chr2.4:12471084-12471103 MS.gene054010:CDS 45.0%
TTTCGGAGACAACCAGGAAT+GGG + chr2.4:12470573-12470592 MS.gene054010:intron 45.0%
! AACTTCGTGCCGATAACATG+AGG + chr2.4:12469840-12469859 MS.gene054010:CDS 45.0%
! CAATGGTCCACAGTTTTCTC+TGG + chr2.4:12471058-12471077 MS.gene054010:CDS 45.0%
!! ACACTGGAAGTGCTATCAAC+TGG + chr2.4:12471100-12471119 MS.gene054010:CDS 45.0%
!! ACTGGAAGTGCTATCAACTG+GGG + chr2.4:12471102-12471121 MS.gene054010:CDS 45.0%
!! CACTGGAAGTGCTATCAACT+GGG + chr2.4:12471101-12471120 MS.gene054010:CDS 45.0%
!! GGCAGTAGTGGATGTTTCTT+TGG + chr2.4:12471386-12471405 MS.gene054010:CDS 45.0%
!! GTATACCTCTTCTCTAAGGC+GGG - chr2.4:12469966-12469985 None:intergenic 45.0%
!!! GGTTTTGGACCAATTCCTCT+AGG - chr2.4:12470795-12470814 None:intergenic 45.0%
!! AAAAGTAAATAAATAAAAAA+TGG - chr2.4:12469466-12469485 None:intergenic 5.0%
AGAAGGCCTTCTTCTGGATC+TGG - chr2.4:12471436-12471455 None:intergenic 50.0%
AGCAACAGAAGGCCTTCTTC+TGG - chr2.4:12471442-12471461 None:intergenic 50.0%
AGGCTTCGATCCCCTACATT+AGG - chr2.4:12470135-12470154 None:intergenic 50.0%
CAAGTACGTAGGAAAGCCAG+TGG + chr2.4:12470486-12470505 MS.gene054010:CDS 50.0%
CACACCCTGATGACAAGCAA+AGG + chr2.4:12469598-12469617 MS.gene054010:CDS 50.0%
CACCGTTGCAACTGTTGTAG+GGG - chr2.4:12470105-12470124 None:intergenic 50.0%
CCCTGATGACAAGCAAAGGA+AGG + chr2.4:12469602-12469621 MS.gene054010:CDS 50.0%
CTAGTTGGCACAAGTGGTGA+AGG - chr2.4:12471318-12471337 None:intergenic 50.0%
CTCTCTCTAGTTGGCACAAG+TGG - chr2.4:12471324-12471343 None:intergenic 50.0%
CTTCTGCCAGATCCAGAAGA+AGG + chr2.4:12471427-12471446 MS.gene054010:CDS 50.0%
CTTCTTCTGGATCTGGCAGA+AGG - chr2.4:12471429-12471448 None:intergenic 50.0%
CTTTGCTTGTCATCAGGGTG+TGG - chr2.4:12469600-12469619 None:intergenic 50.0%
GACATTTCTCCGATGGCAGT+TGG - chr2.4:12469911-12469930 None:intergenic 50.0%
GCACCGTTGCAACTGTTGTA+GGG - chr2.4:12470106-12470125 None:intergenic 50.0%
GCAGTTGGTCCACCACAATT+AGG - chr2.4:12469896-12469915 None:intergenic 50.0%
GCTGCTATGGAGGAACTCAT+TGG + chr2.4:12470684-12470703 MS.gene054010:CDS 50.0%
GGAATTGGTCCAAAACCAGC+TGG + chr2.4:12470798-12470817 MS.gene054010:intron 50.0%
GGAGGAGATATGTATGGAGC+TGG + chr2.4:12470594-12470613 MS.gene054010:intron 50.0%
GGCTTCGATCCCCTACATTA+GGG - chr2.4:12470134-12470153 None:intergenic 50.0%
GTTTCGGAGACAACCAGGAA+TGG + chr2.4:12470572-12470591 MS.gene054010:intron 50.0%
GTTTGCAGACTCAACAGGAG+AGG + chr2.4:12469783-12469802 MS.gene054010:CDS 50.0%
TCCACTACTCTCCCCTTCAT+CGG + chr2.4:12470516-12470535 MS.gene054010:CDS 50.0%
TCCTACGTACTTGGCAGCAA+TGG - chr2.4:12470479-12470498 None:intergenic 50.0%
TGAGCTAGCAGTTGCTGCTA+TGG + chr2.4:12470671-12470690 MS.gene054010:CDS 50.0%
TGATGGAACTTGGGCAGTAG+TGG + chr2.4:12471374-12471393 MS.gene054010:CDS 50.0%
TGCACCGTTGCAACTGTTGT+AGG - chr2.4:12470107-12470126 None:intergenic 50.0%
TGGATCTGGCAGAAGGACTA+GGG - chr2.4:12471422-12471441 None:intergenic 50.0%
TGGTTGCCTACACTTGAAGG+AGG + chr2.4:12470732-12470751 MS.gene054010:CDS 50.0%
!! AGTAGTGGATAGCTCACCAC+TGG - chr2.4:12470505-12470524 None:intergenic 50.0%
!! CACCAATGCCGAGTTCTAGA+GGG - chr2.4:12470552-12470571 None:intergenic 50.0%
!! CACTGGCTTTCCTACGTACT+TGG - chr2.4:12470488-12470507 None:intergenic 50.0%
!! GAACTCGGCATTGGTGGTTT+CGG + chr2.4:12470556-12470575 MS.gene054010:intron 50.0%
ACCGATGAAGGGGAGAGTAG+TGG - chr2.4:12470520-12470539 None:intergenic 55.0%
CTGGATCTGGCAGAAGGACT+AGG - chr2.4:12471423-12471442 None:intergenic 55.0%
GCCATTGCTGCCAAGTACGT+AGG + chr2.4:12470475-12470494 MS.gene054010:CDS 55.0%
GCTAGCAGTTGCTGCTATGG+AGG + chr2.4:12470674-12470693 MS.gene054010:CDS 55.0%
GGTGCAGCGACCCTAATGTA+GGG + chr2.4:12470121-12470140 MS.gene054010:intron 55.0%
GTGCAGCGACCCTAATGTAG+GGG + chr2.4:12470122-12470141 MS.gene054010:intron 55.0%
TGCTATCAACTGGGGTGGCA+GGG + chr2.4:12471110-12471129 MS.gene054010:CDS 55.0%
TGGTGGTTTCGGAGACAACC+AGG + chr2.4:12470567-12470586 MS.gene054010:intron 55.0%
! CCACCAATGCCGAGTTCTAG+AGG - chr2.4:12470553-12470572 None:intergenic 55.0%
!! CCTCTAGAACTCGGCATTGG+TGG + chr2.4:12470550-12470569 MS.gene054010:CDS 55.0%
!! GGAAGTGCTATCAACTGGGG+TGG + chr2.4:12471105-12471124 MS.gene054010:CDS 55.0%
!! TGTGGTGGACCAACTGCCAT+CGG + chr2.4:12469899-12469918 MS.gene054010:CDS 55.0%
CGGAGACAACCAGGAATGGG+AGG + chr2.4:12470576-12470595 MS.gene054010:intron 60.0%
CGGTGCAGCGACCCTAATGT+AGG + chr2.4:12470120-12470139 MS.gene054010:intron 60.0%
GCGAGGAGGAACCGATGAAG+GGG - chr2.4:12470530-12470549 None:intergenic 60.0%
GGCGAGGAGGAACCGATGAA+GGG - chr2.4:12470531-12470550 None:intergenic 60.0%
GGGGTGGCAGGGAACTACAA+TGG + chr2.4:12471121-12471140 MS.gene054010:CDS 60.0%
GTGCTATCAACTGGGGTGGC+AGG + chr2.4:12471109-12471128 MS.gene054010:CDS 60.0%
!! ATGCCGAGTTCTAGAGGGCG+AGG - chr2.4:12470547-12470566 None:intergenic 60.0%
!! CCTCCTCGCCCTCTAGAACT+CGG + chr2.4:12470541-12470560 MS.gene054010:CDS 60.0%
!! CGCCCTCTAGAACTCGGCAT+TGG + chr2.4:12470547-12470566 MS.gene054010:CDS 60.0%
GGGCGAGGAGGAACCGATGA+AGG - chr2.4:12470532-12470551 None:intergenic 65.0%
!! CCGAGTTCTAGAGGGCGAGG+AGG - chr2.4:12470544-12470563 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 12469175 12471464 12469175 ID=MS.gene054010
chr2.4 mRNA 12469175 12471464 12469175 ID=MS.gene054010.t1;Parent=MS.gene054010
chr2.4 exon 12469175 12469304 12469175 ID=MS.gene054010.t1.exon1;Parent=MS.gene054010.t1
chr2.4 CDS 12469175 12469304 12469175 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12469339 12469429 12469339 ID=MS.gene054010.t1.exon2;Parent=MS.gene054010.t1
chr2.4 CDS 12469339 12469429 12469339 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12469581 12469658 12469581 ID=MS.gene054010.t1.exon3;Parent=MS.gene054010.t1
chr2.4 CDS 12469581 12469658 12469581 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12469766 12469979 12469766 ID=MS.gene054010.t1.exon4;Parent=MS.gene054010.t1
chr2.4 CDS 12469766 12469979 12469766 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12470460 12470571 12470460 ID=MS.gene054010.t1.exon5;Parent=MS.gene054010.t1
chr2.4 CDS 12470460 12470571 12470460 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12470601 12470804 12470601 ID=MS.gene054010.t1.exon6;Parent=MS.gene054010.t1
chr2.4 CDS 12470601 12470804 12470601 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12470834 12470898 12470834 ID=MS.gene054010.t1.exon7;Parent=MS.gene054010.t1
chr2.4 CDS 12470834 12470898 12470834 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12471055 12471156 12471055 ID=MS.gene054010.t1.exon8;Parent=MS.gene054010.t1
chr2.4 CDS 12471055 12471156 12471055 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
chr2.4 exon 12471294 12471464 12471294 ID=MS.gene054010.t1.exon9;Parent=MS.gene054010.t1
chr2.4 CDS 12471294 12471464 12471294 ID=cds.MS.gene054010.t1;Parent=MS.gene054010.t1
Gene Sequence

>MS.gene054010

AAAATGTTCCAGCCAAATCTAATGGAAGCTGGACAACATCATCAACTTCTGCCATTTGACATGACACAAAACAACAACAACACTTCAGAAAGTGATGTTCCAAGAATCCGTGAAGATGAATTATTCGACAGTGCTACAAAAATCTGGTAACAGTGAAAATCAAGAAGCTGCTAATTCAGGTGAAGATCAAGAGCCTCGTGCTAAGAAGAAACGTTATCACCGTCATACACAGCATCAGATCCAAGAAATGGAAGCGTAAGAAGAAAAAAAAACAAAAAAAAACATAATCCATTTTTTATTTATTTACTTTTTTTTTTTTGTAAAAAGTAGTTAAATTTTAAATTTTTGACTGTTTTTTCTTTTTTGGTTTTTTGTTAAATTAATTTATGTGGTTTTGTTTGTTTAGGTTTTTTAAGGAATGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCAGAGAGTTAGGGTTAGAGCCATTACAGTGAAGTTTTGGTTTCAGAACAAACGTACTCAAATGAAGGTATTTGATTTTATTAATTTGGAGGATTTTTTTATTTTATTTTTGGTTGAAAAATGAAGAGGACATAGAATGATATTTTTTTTTGGTTTGCAGACTCAACAGGAGAGGCACGAGAATACTTCACTTAGAACTGAGAATGAGAAACTTCGTGCCGATAACATGAGGTTTAGAGAAGCTCTAAGTAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCCATCGGAGAAATGTCGTTTGATGAACATCACTTGAGGCTTGAAAATTCCCGCCTTAGAGAAGAGGTATACATTCATCGCATTGATTCAGAAATTACACCAAGTTTATGGTGCGATTGATAGACACATATATCAAGATCAATCTTGTTGAACCAAACGCAGTTAAAACATACATCAAGGTCTTGGATCCCCTACAACAGTTGCAACGGTGCAGCGACCCTAATGTAGGGGATCGAAGCCTATATATTTATGGGCGTTTGAAAAAAGTATGAGATTGAAATGAACAATGGTTTTGTAGTCTCCTCGACCAAAATTAATATCGCATCAATCATATTAATTTAATTGTAATTCACTAAAGAATAAAAATTTGCAAAGTGACTTTGACTTCAATTTAAGTCTTGATGATAAAAAAAAAGCTATTTTGTTTTTGTCAAAATTTCGTAATGAAGTGAGTGACCTATTGTTATTCTATCTCTATCATGATAAAAAATCTTCTTCATGATTAACTATATTTTAACCTTCTTTAATTTTGGTGTTAATTTTCAGATTGATAGGATATCTGCCATTGCTGCCAAGTACGTAGGAAAGCCAGTGGTGAGCTATCCACTACTCTCCCCTTCATCGGTTCCTCCTCGCCCTCTAGAACTCGGCATTGGTGGTTTCGGAGACAACCAGGAATGGGAGGAGATATGTATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCTACTGAAGCTGATAAACCAATGATAATTGAGCTAGCAGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTGCCTACACTTGAAGGAGGTTCCATACTCAATGAAGAGGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTAAGTGTGAAGCTTCAAGAGAATCTTCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGGTACGCATACACAAGCTTTACATAATTAAAATATTTTCTTATCTTACATAAGTATTAGAACTTATGCAACATATTTTTTAATATTTGTAGTCTTTTCTTCTTCAAAAAAAATTATTTGTAGTTTTTGACACTATTTTTGTTCTTGTGGTTTATAAGAACCAATGGTCCACAGTTTTCTCTGGCATTGTCTCAAGAGCAATGACACTGGAAGTGCTATCAACTGGGGTGGCAGGGAACTACAATGGTGCATTACAAGTGGTATGTACATATATGATTGATTGTATAAAATATTTATTTTTCTTTGTTATATGATAATTATATTTTTTGACACAATTATATGATAATTAATTAATACATTTTTCTAACGATGAAAATGAATACAATTGAATTTTCAGATGACAGCAGAACTGCAAGTACCTTCACCACTTGTGCCAACTAGAGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGCTGATGGAACTTGGGCAGTAGTGGATGTTTCTTTGGACAATTTACGCCCTAGTCCTTCTGCCAGATCCAGAAGAAGGCCTTCTGTTGCTTAA

Protein sequence

>MS.gene054010.t1

KMFQPNLMEAGQHHQLLPFDMTQNNNNTSESDVPRIREDELFDKAANSGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQMIFFFGLQTQQERHENTSLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENSRLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLPTLEGGSILNEEEYVRSFPRGIASRESSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARSRRRPSVA