Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06707.t1 | XP_003602251.1 | 99.1 | 325 | 2 | 1 | 1 | 325 | 1 | 324 | 8.60E-183 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06707.t1 | Q9STN8 | 79.9 | 329 | 59 | 3 | 1 | 325 | 1 | 326 | 1.6e-156 | 553.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06707.t1 | A8W463 | 99.1 | 325 | 2 | 1 | 1 | 325 | 1 | 324 | 6.2e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58445 | MS.gene06707 | PPI |
| MS.gene03589 | MS.gene06707 | PPI |
| MS.gene50990 | MS.gene06707 | PPI |
| MS.gene033134 | MS.gene06707 | PPI |
| MS.gene018958 | MS.gene06707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06707.t1 | MTR_3g091510 | 99.077 | 325 | 2 | 1 | 1 | 325 | 1 | 324 | 0.0 | 673 |
| MS.gene06707.t1 | MTR_1g008120 | 90.390 | 333 | 24 | 2 | 1 | 325 | 1 | 333 | 0.0 | 618 |
| MS.gene06707.t1 | MTR_8g027520 | 79.692 | 325 | 50 | 4 | 2 | 325 | 9 | 318 | 0.0 | 533 |
| MS.gene06707.t1 | MTR_8g027520 | 79.938 | 324 | 49 | 4 | 3 | 325 | 1 | 309 | 0.0 | 533 |
| MS.gene06707.t1 | MTR_7g117415 | 79.000 | 300 | 50 | 4 | 26 | 325 | 37 | 323 | 5.24e-180 | 500 |
| MS.gene06707.t1 | MTR_3g017590 | 79.630 | 270 | 54 | 1 | 43 | 312 | 36 | 304 | 4.30e-169 | 472 |
| MS.gene06707.t1 | MTR_8g038370 | 76.404 | 267 | 59 | 1 | 50 | 312 | 97 | 363 | 1.22e-160 | 453 |
| MS.gene06707.t1 | MTR_7g093600 | 70.890 | 292 | 75 | 2 | 29 | 311 | 19 | 309 | 2.32e-156 | 440 |
| MS.gene06707.t1 | MTR_1g054335 | 70.103 | 291 | 80 | 2 | 29 | 312 | 19 | 309 | 2.54e-154 | 435 |
| MS.gene06707.t1 | MTR_5g076660 | 28.365 | 208 | 139 | 4 | 62 | 269 | 34 | 231 | 9.49e-20 | 89.0 |
| MS.gene06707.t1 | MTR_7g024290 | 27.619 | 210 | 142 | 4 | 60 | 269 | 10 | 209 | 3.03e-19 | 87.0 |
| MS.gene06707.t1 | MTR_4g094468 | 26.250 | 240 | 154 | 8 | 38 | 272 | 76 | 297 | 6.25e-19 | 86.3 |
| MS.gene06707.t1 | MTR_2g038430 | 30.519 | 154 | 95 | 3 | 36 | 186 | 7 | 151 | 5.62e-18 | 83.6 |
| MS.gene06707.t1 | MTR_5g067400 | 28.436 | 211 | 139 | 5 | 61 | 270 | 11 | 210 | 1.13e-17 | 82.4 |
| MS.gene06707.t1 | MTR_7g094390 | 32.450 | 151 | 93 | 2 | 33 | 176 | 137 | 285 | 2.63e-17 | 82.8 |
| MS.gene06707.t1 | MTR_5g076540 | 32.948 | 173 | 100 | 5 | 60 | 227 | 10 | 171 | 2.25e-16 | 77.8 |
| MS.gene06707.t1 | MTR_5g076720 | 30.405 | 148 | 98 | 2 | 42 | 186 | 63 | 208 | 7.83e-16 | 77.8 |
| MS.gene06707.t1 | MTR_5g061290 | 29.861 | 144 | 95 | 4 | 51 | 193 | 8 | 146 | 2.04e-15 | 76.3 |
| MS.gene06707.t1 | MTR_5g076370 | 26.230 | 244 | 163 | 7 | 62 | 304 | 34 | 261 | 2.64e-15 | 75.9 |
| MS.gene06707.t1 | MTR_5g076520 | 32.768 | 177 | 103 | 5 | 56 | 227 | 6 | 171 | 6.37e-15 | 74.7 |
| MS.gene06707.t1 | MTR_2g038420 | 27.778 | 144 | 101 | 2 | 50 | 193 | 14 | 154 | 2.76e-14 | 72.8 |
| MS.gene06707.t1 | MTR_1g046650 | 35.345 | 116 | 72 | 2 | 61 | 176 | 11 | 123 | 6.33e-14 | 71.6 |
| MS.gene06707.t1 | MTR_1g046650 | 35.345 | 116 | 72 | 2 | 61 | 176 | 42 | 154 | 6.99e-14 | 72.0 |
| MS.gene06707.t1 | MTR_1g046640 | 26.636 | 214 | 136 | 6 | 61 | 269 | 11 | 208 | 7.42e-13 | 68.6 |
| MS.gene06707.t1 | MTR_5g076820 | 25.333 | 225 | 143 | 7 | 53 | 270 | 11 | 217 | 2.68e-12 | 66.6 |
| MS.gene06707.t1 | MTR_5g076505 | 30.128 | 156 | 93 | 5 | 77 | 227 | 23 | 167 | 4.56e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06707.t1 | AT4G27880 | 81.818 | 330 | 51 | 4 | 1 | 325 | 1 | 326 | 0.0 | 555 |
| MS.gene06707.t1 | AT3G61790 | 82.209 | 326 | 54 | 2 | 1 | 323 | 1 | 325 | 0.0 | 551 |
| MS.gene06707.t1 | AT3G58040 | 80.075 | 266 | 53 | 0 | 47 | 312 | 43 | 308 | 3.57e-164 | 459 |
| MS.gene06707.t1 | AT3G58040 | 80.075 | 266 | 53 | 0 | 47 | 312 | 43 | 308 | 3.57e-164 | 459 |
| MS.gene06707.t1 | AT2G41980 | 80.620 | 258 | 50 | 0 | 55 | 312 | 48 | 305 | 3.54e-161 | 452 |
| MS.gene06707.t1 | AT5G53360 | 88.532 | 218 | 24 | 1 | 109 | 325 | 15 | 232 | 1.76e-147 | 414 |
| MS.gene06707.t1 | AT5G53360 | 88.532 | 218 | 24 | 1 | 109 | 325 | 15 | 232 | 1.76e-147 | 414 |
| MS.gene06707.t1 | AT3G58040 | 73.837 | 172 | 42 | 1 | 47 | 215 | 43 | 214 | 9.88e-90 | 268 |
| MS.gene06707.t1 | AT5G53360 | 86.667 | 120 | 15 | 1 | 207 | 325 | 60 | 179 | 3.57e-74 | 226 |
| MS.gene06707.t1 | AT5G53360 | 61.017 | 59 | 10 | 3 | 19 | 77 | 14 | 59 | 5.81e-13 | 66.6 |
| MS.gene06707.t1 | AT3G13672 | 58.333 | 168 | 67 | 1 | 148 | 312 | 45 | 212 | 7.06e-72 | 222 |
| MS.gene06707.t1 | AT3G13672 | 50.769 | 195 | 66 | 2 | 148 | 312 | 45 | 239 | 2.16e-66 | 209 |
| MS.gene06707.t1 | AT5G37870 | 39.844 | 128 | 74 | 2 | 60 | 187 | 41 | 165 | 2.05e-25 | 103 |
| MS.gene06707.t1 | AT5G37930 | 41.322 | 121 | 69 | 1 | 60 | 180 | 109 | 227 | 3.40e-24 | 101 |
| MS.gene06707.t1 | AT5G37890 | 28.340 | 247 | 162 | 6 | 60 | 304 | 47 | 280 | 9.82e-23 | 96.3 |
| MS.gene06707.t1 | AT1G66660 | 41.964 | 112 | 63 | 1 | 60 | 171 | 102 | 211 | 8.05e-21 | 92.0 |
| MS.gene06707.t1 | AT5G62800 | 27.059 | 255 | 158 | 7 | 60 | 304 | 39 | 275 | 9.70e-21 | 91.7 |
| MS.gene06707.t1 | AT5G62800 | 27.570 | 214 | 131 | 5 | 60 | 263 | 39 | 238 | 1.99e-20 | 90.5 |
| MS.gene06707.t1 | AT1G66650 | 39.496 | 119 | 69 | 2 | 61 | 178 | 83 | 199 | 2.10e-20 | 90.5 |
| MS.gene06707.t1 | AT1G66620 | 31.707 | 164 | 100 | 3 | 15 | 176 | 1 | 154 | 8.99e-20 | 88.6 |
| MS.gene06707.t1 | AT5G37910 | 36.364 | 121 | 75 | 1 | 60 | 180 | 34 | 152 | 2.53e-19 | 86.7 |
| MS.gene06707.t1 | AT1G66630 | 35.211 | 142 | 86 | 3 | 42 | 179 | 25 | 164 | 5.09e-19 | 86.3 |
| MS.gene06707.t1 | AT1G66610 | 31.373 | 102 | 67 | 1 | 22 | 123 | 122 | 220 | 2.88e-13 | 68.9 |
| MS.gene06707.t1 | AT1G66610 | 40.299 | 67 | 40 | 0 | 60 | 126 | 52 | 118 | 2.21e-11 | 63.5 |
| MS.gene06707.t1 | AT1G66610 | 42.857 | 63 | 36 | 0 | 60 | 122 | 52 | 114 | 1.43e-11 | 65.1 |
Find 89 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAGTACGGAAAGATTTC+TGG | 0.135696 | 3.3:+76339103 | None:intergenic |
| CATGGCATTCCTTCGGTTTA+TGG | 0.187403 | 3.3:-76338571 | MS.gene06707:CDS |
| CCAATGGCAGGAAACTAATT+TGG | 0.224343 | 3.3:-76338500 | MS.gene06707:CDS |
| TGCCATTGGCCCCAACTTCC+AGG | 0.258310 | 3.3:+76338514 | None:intergenic |
| CTGTTCCTTCCATATTCTTC+CGG | 0.314137 | 3.3:+76338347 | None:intergenic |
| CATGGCTATCCCTAACTTTA+CGG | 0.322991 | 3.3:+76338445 | None:intergenic |
| CCTTCCTCGTTGCTCATTTG+AGG | 0.328243 | 3.3:-76338994 | MS.gene06707:CDS |
| TCTCATCATTCAAAGAAATA+TGG | 0.337511 | 3.3:-76338418 | MS.gene06707:CDS |
| CGAAGGAATGCCATGTAAAC+AGG | 0.339012 | 3.3:+76338579 | None:intergenic |
| GAGATAGCCACCGTAAAGTT+AGG | 0.341144 | 3.3:-76338455 | MS.gene06707:CDS |
| CGAAATGAAGGCAGAAATAT+TGG | 0.345692 | 3.3:+76338625 | None:intergenic |
| CTTCCTCGTTGCTCATTTGA+GGG | 0.347185 | 3.3:-76338993 | MS.gene06707:CDS |
| ATGGCATTCCTTCGGTTTAT+GGG | 0.351962 | 3.3:-76338570 | MS.gene06707:CDS |
| TTAGAGTCACCGGAAGAATA+TGG | 0.353223 | 3.3:-76338356 | MS.gene06707:CDS |
| TGGTAGGTATTTCATTGTTT+CGG | 0.354264 | 3.3:-76338648 | MS.gene06707:intron |
| ACCTCCATTTCTAGCCTTTG+TGG | 0.363878 | 3.3:+76340073 | None:intergenic |
| CCAAATTAGTTTCCTGCCAT+TGG | 0.365498 | 3.3:+76338500 | None:intergenic |
| ACAGCTATAGCCTGGAAGTT+GGG | 0.376210 | 3.3:-76338524 | MS.gene06707:CDS |
| CCAGCATAAGGACAACTATA+AGG | 0.377058 | 3.3:+76339046 | None:intergenic |
| TCTTCCACAAAGGCTAGAAA+TGG | 0.399306 | 3.3:-76340077 | MS.gene06707:CDS |
| GACAAGAGCTTGGAGATATC+AGG | 0.428702 | 3.3:-76339192 | MS.gene06707:CDS |
| TACATTGAATTAGTACAAAC+AGG | 0.438651 | 3.3:+76339978 | None:intergenic |
| AATTCATGAACACTAGTTGC+AGG | 0.439938 | 3.3:+76340011 | None:intergenic |
| CTGTTTACATGGCATTCCTT+CGG | 0.442197 | 3.3:-76338578 | MS.gene06707:CDS |
| TGGAAGTTGGGGCCAATGGC+AGG | 0.450751 | 3.3:-76338512 | MS.gene06707:CDS |
| CCTTATAGTTGTCCTTATGC+TGG | 0.456115 | 3.3:-76339046 | MS.gene06707:CDS |
| CGGCATGGCCCCTGTTTACA+TGG | 0.462475 | 3.3:-76338589 | MS.gene06707:CDS |
| TCATTTGAGGGATGATCATA+AGG | 0.467924 | 3.3:-76338981 | MS.gene06707:CDS |
| GGTTGCATTCTCTACTTCAC+GGG | 0.476035 | 3.3:+76338907 | None:intergenic |
| CAATGGCAGGAAACTAATTT+GGG | 0.476420 | 3.3:-76338499 | MS.gene06707:CDS |
| TGTGTCATCTTCTGATGGTA+TGG | 0.476458 | 3.3:-76340147 | MS.gene06707:CDS |
| AATGTACCCTCCAATTCATC+AGG | 0.481409 | 3.3:-76339961 | MS.gene06707:intron |
| AGCCTGGAAGTTGGGGCCAA+TGG | 0.495755 | 3.3:-76338516 | MS.gene06707:CDS |
| TGCTTAAGCTTGCTGTAGTA+CGG | 0.505424 | 3.3:+76339091 | None:intergenic |
| TACAGCTATAGCCTGGAAGT+TGG | 0.506295 | 3.3:-76338525 | MS.gene06707:CDS |
| ACATGTCAACTACATAGATT+AGG | 0.507688 | 3.3:+76338300 | None:intergenic |
| GCTGAAAAGCTTCGAAATGA+AGG | 0.509904 | 3.3:+76338613 | None:intergenic |
| AGATATCAGGTGTCTAGCAC+TGG | 0.513124 | 3.3:-76339179 | MS.gene06707:CDS |
| TGGCTATCTCGAACACTTCG+TGG | 0.517363 | 3.3:+76338468 | None:intergenic |
| TTGGTGAGAGTTGATGGAGT+TGG | 0.518547 | 3.3:-76340183 | None:intergenic |
| AGATAGCCACCGTAAAGTTA+GGG | 0.523812 | 3.3:-76338454 | MS.gene06707:CDS |
| TTTCTCTGGTGGGGATAGGA+AGG | 0.529034 | 3.3:-76338388 | MS.gene06707:CDS |
| TTTGAATGATGAGACCATCA+TGG | 0.537385 | 3.3:+76338427 | None:intergenic |
| AGGTTGCATTCTCTACTTCA+CGG | 0.538145 | 3.3:+76338906 | None:intergenic |
| AAACAGACCTGATGAATTGG+AGG | 0.545037 | 3.3:+76339954 | None:intergenic |
| AACACTTACTGTGAGCATCC+AGG | 0.545362 | 3.3:+76338886 | None:intergenic |
| GAACACTCTGATCCAGCATA+AGG | 0.545667 | 3.3:+76339034 | None:intergenic |
| AACACTAGTTGCAGGAGCAA+TGG | 0.560424 | 3.3:+76340019 | None:intergenic |
| CCGACTTGTAGACAAGAGCT+TGG | 0.568050 | 3.3:-76339202 | MS.gene06707:CDS |
| CCGTGCAAGTACTACTCCCT+CGG | 0.569828 | 3.3:-76339130 | MS.gene06707:CDS |
| GAAGGAATGCCATGTAAACA+GGG | 0.574222 | 3.3:+76338580 | None:intergenic |
| CAGGTGTCTAGCACTGGAGA+AGG | 0.574745 | 3.3:-76339173 | MS.gene06707:CDS |
| CAGCTATAGCCTGGAAGTTG+GGG | 0.575048 | 3.3:-76338523 | MS.gene06707:CDS |
| CCTCAAATGAGCAACGAGGA+AGG | 0.575571 | 3.3:+76338994 | None:intergenic |
| ACGATGGTTGAATGTGCATC+CGG | 0.576887 | 3.3:+76338946 | None:intergenic |
| AAAGTTAGGGATAGCCATGA+TGG | 0.577239 | 3.3:-76338441 | MS.gene06707:CDS |
| GTGTCTAGCACTGGAGAAGG+TGG | 0.582498 | 3.3:-76339170 | MS.gene06707:CDS |
| ATCTTCTGATGGTATGGATG+AGG | 0.586643 | 3.3:-76340141 | MS.gene06707:CDS |
| TCGGAACTACAGCTATAGCC+TGG | 0.593507 | 3.3:-76338532 | MS.gene06707:CDS |
| GGATCAGAGTGTTCCACTGT+TGG | 0.593621 | 3.3:-76339025 | MS.gene06707:CDS |
| GAGTGTGTGTCATCTTCTGA+TGG | 0.594300 | 3.3:-76340152 | MS.gene06707:CDS |
| TATGTTCCACATGCAAAACA+CGG | 0.594502 | 3.3:-76339240 | MS.gene06707:CDS |
| GAGCTGAAACTTAGAGTCAC+CGG | 0.595016 | 3.3:-76338366 | MS.gene06707:CDS |
| GTTGCAGGAGCAATGGCGGT+AGG | 0.608285 | 3.3:+76340026 | None:intergenic |
| TCCACAAAGGCTAGAAATGG+AGG | 0.618376 | 3.3:-76340074 | MS.gene06707:CDS |
| GTTTCTTTGCAGTGTCACAA+TGG | 0.619032 | 3.3:-76339271 | MS.gene06707:intron |
| GTGAAGTAGAGAATGCAACC+TGG | 0.619430 | 3.3:-76338904 | MS.gene06707:CDS |
| TTTCGTCGCCCATAAACCGA+AGG | 0.621109 | 3.3:+76338562 | None:intergenic |
| GAAAGATTTCTGGACATCCG+AGG | 0.626381 | 3.3:+76339113 | None:intergenic |
| TGGCAGGAAACTAATTTGGG+AGG | 0.629177 | 3.3:-76338496 | MS.gene06707:CDS |
| TGGGCGACGAAAACGAAGCT+CGG | 0.631190 | 3.3:-76338551 | MS.gene06707:CDS |
| CTTGTCTACAAGTCGGACAT+CGG | 0.631341 | 3.3:+76339209 | None:intergenic |
| CATAAGGTGGACATGCACAC+CGG | 0.633944 | 3.3:-76338965 | MS.gene06707:CDS |
| GGCAGGAAACTAATTTGGGA+GGG | 0.633978 | 3.3:-76338495 | MS.gene06707:CDS |
| AGTCACCGGAAGAATATGGA+AGG | 0.634301 | 3.3:-76338352 | MS.gene06707:CDS |
| GATTTGACTTCACATAACGA+TGG | 0.635258 | 3.3:+76338930 | None:intergenic |
| GAAGGAAATATCGCCAACAG+TGG | 0.648090 | 3.3:+76339012 | None:intergenic |
| AAAGATTTCTGGACATCCGA+GGG | 0.649930 | 3.3:+76339114 | None:intergenic |
| AACAGACCTGATGAATTGGA+GGG | 0.650420 | 3.3:+76339955 | None:intergenic |
| CCGAGGGAGTAGTACTTGCA+CGG | 0.651023 | 3.3:+76339130 | None:intergenic |
| CCAAGCTCTTGTCTACAAGT+CGG | 0.654211 | 3.3:+76339202 | None:intergenic |
| ATGTTCCACATGCAAAACAC+GGG | 0.655608 | 3.3:-76339239 | MS.gene06707:CDS |
| ACTAGTTGCAGGAGCAATGG+CGG | 0.656731 | 3.3:+76340022 | None:intergenic |
| TTTGAGGGATGATCATAAGG+TGG | 0.662444 | 3.3:-76338978 | MS.gene06707:CDS |
| GGCTATCCCTAACTTTACGG+TGG | 0.676596 | 3.3:+76338448 | None:intergenic |
| TGCATGTGGAACATAGTGTG+TGG | 0.716868 | 3.3:+76339248 | None:intergenic |
| GTTGCATTCTCTACTTCACG+GGG | 0.718362 | 3.3:+76338908 | None:intergenic |
| AAGGAATGCCATGTAAACAG+GGG | 0.734985 | 3.3:+76338581 | None:intergenic |
| CATCCCTCAAATGAGCAACG+AGG | 0.739693 | 3.3:+76338990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAACCATTAAATCTA+TGG | - | chr3.3:76339018-76339037 | MS.gene06707:CDS | 15.0% |
| !!! | ATTTTAACCATTAAATCTAT+GGG | - | chr3.3:76339019-76339038 | MS.gene06707:CDS | 15.0% |
| !!! | GCAAATATCAATAATATTTT+AGG | - | chr3.3:76338425-76338444 | MS.gene06707:CDS | 15.0% |
| !!! | TTATATTATTTTTCTGTTGA+CGG | - | chr3.3:76339680-76339699 | MS.gene06707:intron | 15.0% |
| !! | TCATAAAAAAAATTAGGAGA+GGG | - | chr3.3:76338606-76338625 | MS.gene06707:CDS | 20.0% |
| !! | TTCATAAAAAAAATTAGGAG+AGG | - | chr3.3:76338605-76338624 | MS.gene06707:CDS | 20.0% |
| !!! | ATTTGAATTGGAAGATTTTA+GGG | - | chr3.3:76338580-76338599 | MS.gene06707:CDS | 20.0% |
| !!! | GGGTTTTCATAAAAAAAATT+AGG | - | chr3.3:76338600-76338619 | MS.gene06707:CDS | 20.0% |
| !!! | TAGTATTTTATCGTTTTAGA+TGG | - | chr3.3:76339617-76339636 | MS.gene06707:intron | 20.0% |
| !!! | TATATTATTTTTCTGTTGAC+GGG | - | chr3.3:76339681-76339700 | MS.gene06707:intron | 20.0% |
| !!! | TTTTAACCATTAAATCTATG+GGG | - | chr3.3:76339020-76339039 | MS.gene06707:CDS | 20.0% |
| ! | AAACCATTTAACCAATCAAA+TGG | + | chr3.3:76339661-76339680 | None:intergenic | 25.0% |
| ! | ATAAAAAAAATTAGGAGAGG+GGG | - | chr3.3:76338608-76338627 | MS.gene06707:CDS | 25.0% |
| ! | ATATTTGTGTACCATTTGAT+TGG | - | chr3.3:76339647-76339666 | MS.gene06707:intron | 25.0% |
| ! | CATAAAAAAAATTAGGAGAG+GGG | - | chr3.3:76338607-76338626 | MS.gene06707:CDS | 25.0% |
| ! | TACATTGAATTAGTACAAAC+AGG | + | chr3.3:76338500-76338519 | None:intergenic | 25.0% |
| ! | TACCATGATTTCATTTGAAT+TGG | - | chr3.3:76338568-76338587 | MS.gene06707:CDS | 25.0% |
| ! | TATTCAATGACAACATCATA+AGG | - | chr3.3:76338871-76338890 | MS.gene06707:intron | 25.0% |
| ! | TCTCATCATTCAAAGAAATA+TGG | - | chr3.3:76340057-76340076 | MS.gene06707:CDS | 25.0% |
| ! | TTCCAATTCAAATGAAATCA+TGG | + | chr3.3:76338573-76338592 | None:intergenic | 25.0% |
| ! | TTTAATGGTTAAAATTTCGC+TGG | + | chr3.3:76339014-76339033 | None:intergenic | 25.0% |
| !! | CATTTGAATTGGAAGATTTT+AGG | - | chr3.3:76338579-76338598 | MS.gene06707:CDS | 25.0% |
| AAAAAACAGACCTGATGAAT+TGG | + | chr3.3:76338527-76338546 | None:intergenic | 30.0% | |
| AAATATTGACAACTGGACAA+TGG | + | chr3.3:76338955-76338974 | None:intergenic | 30.0% | |
| AACATGAGTTAATCAAAGAC+TGG | + | chr3.3:76339086-76339105 | None:intergenic | 30.0% | |
| AATGGTACACAAATATGTTC+CGG | + | chr3.3:76339643-76339662 | None:intergenic | 30.0% | |
| CTACCAAACAAAAGTAAAGT+CGG | + | chr3.3:76339813-76339832 | None:intergenic | 30.0% | |
| TAAAAAAAATTAGGAGAGGG+GGG | - | chr3.3:76338609-76338628 | MS.gene06707:CDS | 30.0% | |
| TGGTAGGTATTTCATTGTTT+CGG | - | chr3.3:76339827-76339846 | MS.gene06707:intron | 30.0% | |
| TTAAACTGTAACCTAAGTGA+AGG | - | chr3.3:76338819-76338838 | MS.gene06707:intron | 30.0% | |
| TTTCCTTGAAATACACTTCT+GGG | + | chr3.3:76338789-76338808 | None:intergenic | 30.0% | |
| ! | AAAAGTGTATGTTTGCCAAA+AGG | - | chr3.3:76339159-76339178 | MS.gene06707:CDS | 30.0% |
| ! | CATATTTTATCCTCACCTTT+TGG | + | chr3.3:76339177-76339196 | None:intergenic | 30.0% |
| ! | GTACCATTTGATTGGTTAAA+TGG | - | chr3.3:76339655-76339674 | MS.gene06707:intron | 30.0% |
| ! | TTTTCCTTGAAATACACTTC+TGG | + | chr3.3:76338790-76338809 | None:intergenic | 30.0% |
| !! | AATATGGCACTATTTTTCTC+TGG | - | chr3.3:76340073-76340092 | MS.gene06707:CDS | 30.0% |
| !! | ATTTTATCGTTTTAGATGGC+CGG | - | chr3.3:76339621-76339640 | MS.gene06707:intron | 30.0% |
| !! | CACTTTTTGTAGCTTAATCA+TGG | + | chr3.3:76339146-76339165 | None:intergenic | 30.0% |
| AATTCATGAACACTAGTTGC+AGG | + | chr3.3:76338467-76338486 | None:intergenic | 35.0% | |
| ACAACACCCCATAGATTTAA+TGG | + | chr3.3:76339029-76339048 | None:intergenic | 35.0% | |
| CAATGGCAGGAAACTAATTT+GGG | - | chr3.3:76339976-76339995 | MS.gene06707:CDS | 35.0% | |
| CGAAATGAAGGCAGAAATAT+TGG | + | chr3.3:76339853-76339872 | None:intergenic | 35.0% | |
| GTATCTTTAATTGAGCTGTG+AGG | - | chr3.3:76339107-76339126 | MS.gene06707:CDS | 35.0% | |
| TATGTTCCACATGCAAAACA+CGG | - | chr3.3:76339235-76339254 | MS.gene06707:CDS | 35.0% | |
| TCATTTGAGGGATGATCATA+AGG | - | chr3.3:76339494-76339513 | MS.gene06707:intron | 35.0% | |
| TGCACACAAATATTGACAAC+TGG | + | chr3.3:76338962-76338981 | None:intergenic | 35.0% | |
| TTCCTTGAAATACACTTCTG+GGG | + | chr3.3:76338788-76338807 | None:intergenic | 35.0% | |
| TTTGAATGATGAGACCATCA+TGG | + | chr3.3:76340051-76340070 | None:intergenic | 35.0% | |
| ! | CTCTGAATTTTCTTCCACAA+AGG | - | chr3.3:76338388-76338407 | MS.gene06707:CDS | 35.0% |
| ! | GATGATGATGATGATGTGAA+TGG | + | chr3.3:76338367-76338386 | None:intergenic | 35.0% |
| ! | GATTTGACTTCACATAACGA+TGG | + | chr3.3:76339548-76339567 | None:intergenic | 35.0% |
| !! | CGACTTTACTTTTGTTTGGT+AGG | - | chr3.3:76339811-76339830 | MS.gene06707:intron | 35.0% |
| !!! | TTGCCGACTTTACTTTTGTT+TGG | - | chr3.3:76339807-76339826 | MS.gene06707:intron | 35.0% |
| AAACAGACCTGATGAATTGG+AGG | + | chr3.3:76338524-76338543 | None:intergenic | 40.0% | |
| AAAGTTAGGGATAGCCATGA+TGG | - | chr3.3:76340034-76340053 | MS.gene06707:CDS | 40.0% | |
| AACAGACCTGATGAATTGGA+GGG | + | chr3.3:76338523-76338542 | None:intergenic | 40.0% | |
| AAGGAATGCCATGTAAACAG+GGG | + | chr3.3:76339897-76339916 | None:intergenic | 40.0% | |
| AATGTACCCTCCAATTCATC+AGG | - | chr3.3:76338514-76338533 | MS.gene06707:CDS | 40.0% | |
| AGATAGCCACCGTAAAGTTA+GGG | - | chr3.3:76340021-76340040 | MS.gene06707:CDS | 40.0% | |
| AGGTTGCATTCTCTACTTCA+CGG | + | chr3.3:76339572-76339591 | None:intergenic | 40.0% | |
| ATCTTCTGATGGTATGGATG+AGG | - | chr3.3:76338334-76338353 | MS.gene06707:CDS | 40.0% | |
| ATGGCATTCCTTCGGTTTAT+GGG | - | chr3.3:76339905-76339924 | MS.gene06707:intron | 40.0% | |
| ATGTTCCACATGCAAAACAC+GGG | - | chr3.3:76339236-76339255 | MS.gene06707:CDS | 40.0% | |
| CAGAAGAATCAGAGAAAGTG+AGG | + | chr3.3:76339786-76339805 | None:intergenic | 40.0% | |
| CATGGCTATCCCTAACTTTA+CGG | + | chr3.3:76340033-76340052 | None:intergenic | 40.0% | |
| CCAATGGCAGGAAACTAATT+TGG | - | chr3.3:76339975-76339994 | MS.gene06707:CDS | 40.0% | |
| CCAGCATAAGGACAACTATA+AGG | + | chr3.3:76339432-76339451 | None:intergenic | 40.0% | |
| CCTTATAGTTGTCCTTATGC+TGG | - | chr3.3:76339429-76339448 | MS.gene06707:intron | 40.0% | |
| CTGAGTCTGTAATGTGATTC+AGG | - | chr3.3:76338680-76338699 | MS.gene06707:intron | 40.0% | |
| CTGTAGTACGGAAAGATTTC+TGG | + | chr3.3:76339375-76339394 | None:intergenic | 40.0% | |
| CTGTTCCTTCCATATTCTTC+CGG | + | chr3.3:76340131-76340150 | None:intergenic | 40.0% | |
| CTGTTTACATGGCATTCCTT+CGG | - | chr3.3:76339897-76339916 | MS.gene06707:intron | 40.0% | |
| GAAGGAATGCCATGTAAACA+GGG | + | chr3.3:76339898-76339917 | None:intergenic | 40.0% | |
| GCTGAAAAGCTTCGAAATGA+AGG | + | chr3.3:76339865-76339884 | None:intergenic | 40.0% | |
| GTCTGTAATGTGATTCAGGT+TGG | - | chr3.3:76338684-76338703 | MS.gene06707:intron | 40.0% | |
| GTTTCTTTGCAGTGTCACAA+TGG | - | chr3.3:76339204-76339223 | MS.gene06707:CDS | 40.0% | |
| TAACCTAAGTGAAGGTGAAG+AGG | - | chr3.3:76338827-76338846 | MS.gene06707:intron | 40.0% | |
| TAACCTCTTCACCTTCACTT+AGG | + | chr3.3:76338833-76338852 | None:intergenic | 40.0% | |
| TCTTCCACAAAGGCTAGAAA+TGG | - | chr3.3:76338398-76338417 | MS.gene06707:CDS | 40.0% | |
| TGTATGTTTGCCAAAAGGTG+AGG | - | chr3.3:76339164-76339183 | MS.gene06707:CDS | 40.0% | |
| TGTGTCATCTTCTGATGGTA+TGG | - | chr3.3:76338328-76338347 | MS.gene06707:CDS | 40.0% | |
| TTAGAGTCACCGGAAGAATA+TGG | - | chr3.3:76340119-76340138 | MS.gene06707:CDS | 40.0% | |
| TTTGAGGGATGATCATAAGG+TGG | - | chr3.3:76339497-76339516 | MS.gene06707:intron | 40.0% | |
| ! | AAAGATTTCTGGACATCCGA+GGG | + | chr3.3:76339364-76339383 | None:intergenic | 40.0% |
| ! | CATTTCGAAGCTTTTCAGCT+CGG | - | chr3.3:76339866-76339885 | MS.gene06707:intron | 40.0% |
| ! | CCAAATTAGTTTCCTGCCAT+TGG | + | chr3.3:76339978-76339997 | None:intergenic | 40.0% |
| ! | TATTTTTCTCTGGTGGGGAT+AGG | - | chr3.3:76340083-76340102 | MS.gene06707:CDS | 40.0% |
| !! | ATGGCACTATTTTTCTCTGG+TGG | - | chr3.3:76340076-76340095 | MS.gene06707:CDS | 40.0% |
| !! | CAGGTTGGTTATGTCAAGTT+TGG | - | chr3.3:76338699-76338718 | MS.gene06707:intron | 40.0% |
| !! | TGCTTAAGCTTGCTGTAGTA+CGG | + | chr3.3:76339387-76339406 | None:intergenic | 40.0% |
| !! | TGGCACTATTTTTCTCTGGT+GGG | - | chr3.3:76340077-76340096 | MS.gene06707:CDS | 40.0% |
| AACACTAGTTGCAGGAGCAA+TGG | + | chr3.3:76338459-76338478 | None:intergenic | 45.0% | |
| AACACTTACTGTGAGCATCC+AGG | + | chr3.3:76339592-76339611 | None:intergenic | 45.0% | |
| ACAGCTATAGCCTGGAAGTT+GGG | - | chr3.3:76339951-76339970 | MS.gene06707:intron | 45.0% | |
| ACGATGGTTGAATGTGCATC+CGG | + | chr3.3:76339532-76339551 | None:intergenic | 45.0% | |
| AGATATCAGGTGTCTAGCAC+TGG | - | chr3.3:76339296-76339315 | MS.gene06707:intron | 45.0% | |
| AGATTACATGTTGCAGCGAG+AGG | + | chr3.3:76339739-76339758 | None:intergenic | 45.0% | |
| AGTCACCGGAAGAATATGGA+AGG | - | chr3.3:76340123-76340142 | MS.gene06707:CDS | 45.0% | |
| CATGGCATTCCTTCGGTTTA+TGG | - | chr3.3:76339904-76339923 | MS.gene06707:intron | 45.0% | |
| CCAAGCTCTTGTCTACAAGT+CGG | + | chr3.3:76339276-76339295 | None:intergenic | 45.0% | |
| CGAAGGAATGCCATGTAAAC+AGG | + | chr3.3:76339899-76339918 | None:intergenic | 45.0% | |
| CTTCCTCGTTGCTCATTTGA+GGG | - | chr3.3:76339482-76339501 | MS.gene06707:intron | 45.0% | |
| CTTGTCTACAAGTCGGACAT+CGG | + | chr3.3:76339269-76339288 | None:intergenic | 45.0% | |
| GAACACTCTGATCCAGCATA+AGG | + | chr3.3:76339444-76339463 | None:intergenic | 45.0% | |
| GAAGGAAATATCGCCAACAG+TGG | + | chr3.3:76339466-76339485 | None:intergenic | 45.0% | |
| GACAAGAGCTTGGAGATATC+AGG | - | chr3.3:76339283-76339302 | MS.gene06707:intron | 45.0% | |
| GAGATAGCCACCGTAAAGTT+AGG | - | chr3.3:76340020-76340039 | MS.gene06707:CDS | 45.0% | |
| GAGCTGAAACTTAGAGTCAC+CGG | - | chr3.3:76340109-76340128 | MS.gene06707:CDS | 45.0% | |
| GAGTGTGTGTCATCTTCTGA+TGG | - | chr3.3:76338323-76338342 | MS.gene06707:CDS | 45.0% | |
| GATTACATGTTGCAGCGAGA+GGG | + | chr3.3:76339738-76339757 | None:intergenic | 45.0% | |
| GGCAGGAAACTAATTTGGGA+GGG | - | chr3.3:76339980-76339999 | MS.gene06707:CDS | 45.0% | |
| GGTTGCATTCTCTACTTCAC+GGG | + | chr3.3:76339571-76339590 | None:intergenic | 45.0% | |
| GTGAAGTAGAGAATGCAACC+TGG | - | chr3.3:76339571-76339590 | MS.gene06707:intron | 45.0% | |
| GTTGCATTCTCTACTTCACG+GGG | + | chr3.3:76339570-76339589 | None:intergenic | 45.0% | |
| TACAGCTATAGCCTGGAAGT+TGG | - | chr3.3:76339950-76339969 | MS.gene06707:intron | 45.0% | |
| TCCACAAAGGCTAGAAATGG+AGG | - | chr3.3:76338401-76338420 | MS.gene06707:CDS | 45.0% | |
| TCGCTGGATTCACTATTGTG+TGG | + | chr3.3:76338998-76339017 | None:intergenic | 45.0% | |
| TGCATGTGGAACATAGTGTG+TGG | + | chr3.3:76339230-76339249 | None:intergenic | 45.0% | |
| TGGCAGGAAACTAATTTGGG+AGG | - | chr3.3:76339979-76339998 | MS.gene06707:CDS | 45.0% | |
| ! | CACCCCAGAAGTGTATTTCA+AGG | - | chr3.3:76338783-76338802 | MS.gene06707:intron | 45.0% |
| ! | GAAAGATTTCTGGACATCCG+AGG | + | chr3.3:76339365-76339384 | None:intergenic | 45.0% |
| !! | ACCTCCATTTCTAGCCTTTG+TGG | + | chr3.3:76338405-76338424 | None:intergenic | 45.0% |
| !! | ATACACTTCTGGGGTGCATT+AGG | + | chr3.3:76338779-76338798 | None:intergenic | 45.0% |
| !! | GGCACTATTTTTCTCTGGTG+GGG | - | chr3.3:76340078-76340097 | MS.gene06707:CDS | 45.0% |
| ACTAGTTGCAGGAGCAATGG+CGG | + | chr3.3:76338456-76338475 | None:intergenic | 50.0% | |
| CAGCTATAGCCTGGAAGTTG+GGG | - | chr3.3:76339952-76339971 | MS.gene06707:intron | 50.0% | |
| CATAAGGTGGACATGCACAC+CGG | - | chr3.3:76339510-76339529 | MS.gene06707:intron | 50.0% | |
| CATCCCTCAAATGAGCAACG+AGG | + | chr3.3:76339488-76339507 | None:intergenic | 50.0% | |
| CCTCAAATGAGCAACGAGGA+AGG | + | chr3.3:76339484-76339503 | None:intergenic | 50.0% | |
| CCTTCCTCGTTGCTCATTTG+AGG | - | chr3.3:76339481-76339500 | MS.gene06707:intron | 50.0% | |
| GGCTATCCCTAACTTTACGG+TGG | + | chr3.3:76340030-76340049 | None:intergenic | 50.0% | |
| TCGGAACTACAGCTATAGCC+TGG | - | chr3.3:76339943-76339962 | MS.gene06707:intron | 50.0% | |
| TGGCTATCTCGAACACTTCG+TGG | + | chr3.3:76340010-76340029 | None:intergenic | 50.0% | |
| TTTCGTCGCCCATAAACCGA+AGG | + | chr3.3:76339916-76339935 | None:intergenic | 50.0% | |
| TTTCTCTGGTGGGGATAGGA+AGG | - | chr3.3:76340087-76340106 | MS.gene06707:CDS | 50.0% | |
| ! | ATGCACCCGTGTTTTGCATG+TGG | + | chr3.3:76339244-76339263 | None:intergenic | 50.0% |
| ! | CCGACTTGTAGACAAGAGCT+TGG | - | chr3.3:76339273-76339292 | MS.gene06707:intron | 50.0% |
| ! | GAGAGGGGGGTACATTTGAA+TGG | - | chr3.3:76338622-76338641 | MS.gene06707:CDS | 50.0% |
| ! | GGATCAGAGTGTTCCACTGT+TGG | - | chr3.3:76339450-76339469 | MS.gene06707:intron | 50.0% |
| CCGAGGGAGTAGTACTTGCA+CGG | + | chr3.3:76339348-76339367 | None:intergenic | 55.0% | |
| CCGTGCAAGTACTACTCCCT+CGG | - | chr3.3:76339345-76339364 | MS.gene06707:intron | 55.0% | |
| TGGGCGACGAAAACGAAGCT+CGG | - | chr3.3:76339924-76339943 | MS.gene06707:intron | 55.0% | |
| ! | CAGGTGTCTAGCACTGGAGA+AGG | - | chr3.3:76339302-76339321 | MS.gene06707:intron | 55.0% |
| ! | CGAAGCTTTTCAGCTCGGCA+TGG | - | chr3.3:76339871-76339890 | MS.gene06707:intron | 55.0% |
| ! | CTGTTGACGGGTGACAGATG+AGG | - | chr3.3:76339693-76339712 | MS.gene06707:intron | 55.0% |
| ! | GTGTCTAGCACTGGAGAAGG+TGG | - | chr3.3:76339305-76339324 | MS.gene06707:intron | 55.0% |
| AGCCTGGAAGTTGGGGCCAA+TGG | - | chr3.3:76339959-76339978 | MS.gene06707:intron | 60.0% | |
| CGGCATGGCCCCTGTTTACA+TGG | - | chr3.3:76339886-76339905 | MS.gene06707:intron | 60.0% | |
| GTTGCAGGAGCAATGGCGGT+AGG | + | chr3.3:76338452-76338471 | None:intergenic | 60.0% | |
| TGCCATTGGCCCCAACTTCC+AGG | + | chr3.3:76339964-76339983 | None:intergenic | 60.0% | |
| TGGAAGTTGGGGCCAATGGC+AGG | - | chr3.3:76339963-76339982 | MS.gene06707:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76338305 | 76340192 | 76338305 | ID=MS.gene06707 |
| chr3.3 | mRNA | 76338305 | 76340192 | 76338305 | ID=MS.gene06707.t1;Parent=MS.gene06707 |
| chr3.3 | exon | 76339962 | 76340192 | 76339962 | ID=MS.gene06707.t1.exon1;Parent=MS.gene06707.t1 |
| chr3.3 | CDS | 76339962 | 76340192 | 76339962 | ID=cds.MS.gene06707.t1;Parent=MS.gene06707.t1 |
| chr3.3 | exon | 76338895 | 76339281 | 76338895 | ID=MS.gene06707.t1.exon2;Parent=MS.gene06707.t1 |
| chr3.3 | CDS | 76338895 | 76339281 | 76338895 | ID=cds.MS.gene06707.t1;Parent=MS.gene06707.t1 |
| chr3.3 | exon | 76338305 | 76338664 | 76338305 | ID=MS.gene06707.t1.exon3;Parent=MS.gene06707.t1 |
| chr3.3 | CDS | 76338305 | 76338664 | 76338305 | ID=cds.MS.gene06707.t1;Parent=MS.gene06707.t1 |
| Gene Sequence |
| Protein sequence |
