Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033134.t1 | XP_003609049.1 | 99.7 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 9.80E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033134.t1 | Q9FJJ5 | 69.4 | 265 | 75 | 2 | 1 | 262 | 1 | 262 | 5.9e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033134.t1 | G7JQX9 | 99.7 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 7.1e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015206 | MS.gene033134 | PPI |
| MS.gene033134 | MS.gene09540 | PPI |
| MS.gene06926 | MS.gene033134 | PPI |
| MS.gene033134 | MS.gene50990 | PPI |
| MS.gene20245 | MS.gene033134 | PPI |
| MS.gene03589 | MS.gene033134 | PPI |
| MS.gene033134 | MS.gene09543 | PPI |
| MS.gene033134 | MS.gene06707 | PPI |
| MS.gene58445 | MS.gene033134 | PPI |
| MS.gene033134 | MS.gene018958 | PPI |
| MS.gene015202 | MS.gene033134 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033134.t1 | MTR_4g108330 | 99.655 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 0.0 | 601 |
| MS.gene033134.t1 | MTR_0036s0210 | 76.190 | 273 | 60 | 3 | 1 | 271 | 1 | 270 | 8.71e-154 | 431 |
| MS.gene033134.t1 | MTR_5g016520 | 56.071 | 280 | 105 | 4 | 1 | 266 | 1 | 276 | 4.39e-104 | 306 |
| MS.gene033134.t1 | MTR_2072s0010 | 78.846 | 52 | 11 | 0 | 37 | 88 | 1 | 52 | 1.12e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033134.t1 | AT5G62500 | 68.914 | 267 | 77 | 2 | 1 | 264 | 1 | 264 | 2.91e-135 | 384 |
| MS.gene033134.t1 | AT3G47690 | 69.888 | 269 | 68 | 4 | 1 | 266 | 1 | 259 | 1.97e-134 | 382 |
| MS.gene033134.t1 | AT5G67270 | 52.574 | 272 | 108 | 3 | 1 | 255 | 1 | 268 | 6.36e-100 | 296 |
Find 58 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCAGAAGTTTGTAATTC+TGG | 0.195394 | 8.2:+17458646 | None:intergenic |
| CGTTACTGTGATTCTATTAA+TGG | 0.196750 | 8.2:-17457518 | MS.gene033134:CDS |
| GCCAGAATTATTCATAATAT+TGG | 0.260420 | 8.2:+17457165 | None:intergenic |
| GCGAAAATGGCGACGAATAT+AGG | 0.272527 | 8.2:-17459076 | None:intergenic |
| ACCAATATTATGAATAATTC+TGG | 0.280217 | 8.2:-17457166 | MS.gene033134:CDS |
| TACCAGCAAGGAGCTAGTTT+TGG | 0.281303 | 8.2:+17455370 | None:intergenic |
| ACAGGGATATCCTCCACTTC+TGG | 0.363729 | 8.2:+17456452 | None:intergenic |
| GAAGTTAGCAGGCTTGTTAA+AGG | 0.368713 | 8.2:-17457581 | MS.gene033134:CDS |
| ACCTAACGTATATACCTCTT+TGG | 0.375890 | 8.2:+17456901 | None:intergenic |
| GTATAGTGGCCAAGCCATTC+AGG | 0.388153 | 8.2:-17456976 | MS.gene033134:intron |
| CACAGTAACGTTTCAGCCAT+TGG | 0.394635 | 8.2:+17457531 | None:intergenic |
| AGCTAACCAGAGGTTCTATT+AGG | 0.400370 | 8.2:+17457124 | None:intergenic |
| ACCTTAACTCTTCGCTCAAC+AGG | 0.406563 | 8.2:+17457232 | None:intergenic |
| GATGCGTCACATCCATCATT+TGG | 0.413789 | 8.2:+17458817 | None:intergenic |
| TGCTGATTCCTTTGCATCAG+TGG | 0.422807 | 8.2:+17455506 | None:intergenic |
| GCTTGTTAAAGGCAGACCTT+TGG | 0.429462 | 8.2:-17457570 | MS.gene033134:CDS |
| AGGCAGACCTTTGGACAACT+TGG | 0.430840 | 8.2:-17457561 | MS.gene033134:CDS |
| GGCGACGAATATAGGCATAA+TGG | 0.437973 | 8.2:-17459068 | MS.gene033134:CDS |
| TCCTGTTGAGCGAAGAGTTA+AGG | 0.440147 | 8.2:-17457233 | MS.gene033134:CDS |
| GCCAAGCCATTCAGGTCAAG+TGG | 0.449870 | 8.2:-17456968 | MS.gene033134:CDS |
| GGCAGCATATTGAAGTTAGC+AGG | 0.450143 | 8.2:-17457592 | MS.gene033134:intron |
| CCCACTTGACCTGAATGGCT+TGG | 0.452772 | 8.2:+17456967 | None:intergenic |
| GATATTGGTTAGGCTGCATC+TGG | 0.461979 | 8.2:-17458852 | MS.gene033134:intron |
| GCAGGAACGAGATTCTGAAT+TGG | 0.472018 | 8.2:-17459027 | MS.gene033134:CDS |
| ATGGATAGTGCATACTTTGT+CGG | 0.478923 | 8.2:-17459049 | MS.gene033134:CDS |
| ATTATGAATAATTCTGGCTC+AGG | 0.480706 | 8.2:-17457160 | MS.gene033134:CDS |
| CTGGGTCCTAATAGAACCTC+TGG | 0.483064 | 8.2:-17457130 | MS.gene033134:intron |
| CCAAGCCATTCAGGTCAAGT+GGG | 0.506200 | 8.2:-17456967 | MS.gene033134:CDS |
| GATTCAGACTTTGTCCAAAG+AGG | 0.513628 | 8.2:-17456915 | MS.gene033134:intron |
| ACAGCATTCATAGTTTGACT+TGG | 0.516250 | 8.2:+17455423 | None:intergenic |
| CCAGAATTACAAACTTCTGC+AGG | 0.520419 | 8.2:-17458646 | MS.gene033134:CDS |
| GCCATTCAGGTCAAGTGGGG+GGG | 0.520542 | 8.2:-17456963 | MS.gene033134:CDS |
| GTAACAGCCACCTTGTGCAT+TGG | 0.529289 | 8.2:+17458783 | None:intergenic |
| CAAGCCATTCAGGTCAAGTG+GGG | 0.556541 | 8.2:-17456966 | MS.gene033134:CDS |
| ATGATGGATGTGACGCATCA+AGG | 0.557465 | 8.2:-17458813 | MS.gene033134:CDS |
| TTTGTATGCCACTGATGCAA+AGG | 0.562050 | 8.2:-17455514 | MS.gene033134:CDS |
| TGATGCAAAGGAATCAGCAC+TGG | 0.562436 | 8.2:-17455502 | MS.gene033134:CDS |
| AAGCCATTCAGGTCAAGTGG+GGG | 0.563374 | 8.2:-17456965 | MS.gene033134:CDS |
| TGCTGTACAATGCCAAATGA+TGG | 0.564839 | 8.2:-17458829 | MS.gene033134:CDS |
| CAGCATTCATAGTTTGACTT+GGG | 0.565837 | 8.2:+17455424 | None:intergenic |
| AAAAGTCTCTCTCTTTCTCA+AGG | 0.572348 | 8.2:+17456516 | None:intergenic |
| TTCTGGCTCAGGCAACACAC+TGG | 0.577044 | 8.2:-17457149 | MS.gene033134:CDS |
| AGCCATTCAGGTCAAGTGGG+GGG | 0.577781 | 8.2:-17456964 | MS.gene033134:CDS |
| ATAGTGCATACTTTGTCGGC+AGG | 0.594763 | 8.2:-17459045 | MS.gene033134:CDS |
| ACAACTTGGAGTTCCTCCAA+TGG | 0.595027 | 8.2:-17457547 | MS.gene033134:CDS |
| TACTGTGATTCTATTAATGG+CGG | 0.608916 | 8.2:-17457515 | MS.gene033134:CDS |
| TCTGGCTCAGGCAACACACT+GGG | 0.611070 | 8.2:-17457148 | MS.gene033134:CDS |
| CATATGTCAGACTCCAGAAG+TGG | 0.613330 | 8.2:-17456465 | MS.gene033134:CDS |
| ATGTCAGACTCCAGAAGTGG+AGG | 0.615946 | 8.2:-17456462 | MS.gene033134:CDS |
| CAACAAGCTGAAAATTGACA+AGG | 0.632418 | 8.2:-17458616 | MS.gene033134:intron |
| TACTGATCTCAAATTTACAG+TGG | 0.646076 | 8.2:-17456543 | MS.gene033134:CDS |
| AGGAACTCCAAGTTGTCCAA+AGG | 0.646182 | 8.2:+17457554 | None:intergenic |
| AGTAACGTTTCAGCCATTGG+AGG | 0.647456 | 8.2:+17457534 | None:intergenic |
| GTGAGAGATTGAGCTGAAGT+AGG | 0.649304 | 8.2:+17458996 | None:intergenic |
| GCGAAGAGTTAAGGTCGGCA+AGG | 0.651666 | 8.2:-17457224 | MS.gene033134:CDS |
| AGGAGTTGTTCCAATGCACA+AGG | 0.665845 | 8.2:-17458793 | MS.gene033134:intron |
| GTTGAGCGAAGAGTTAAGGT+CGG | 0.693286 | 8.2:-17457229 | MS.gene033134:CDS |
| AGTCTCTCTCTTTCTCAAGG+CGG | 0.725031 | 8.2:+17456519 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTTCTTTATTATAATT+AGG | - | chr8.2:17456244-17456263 | MS.gene033134:intron | 10.0% |
| !! | TAAAATTATATACAAATAAC+TGG | + | chr8.2:17457662-17457681 | None:intergenic | 10.0% |
| !!! | TGAACTATAATTATTTTTTT+TGG | - | chr8.2:17458371-17458390 | MS.gene033134:intron | 10.0% |
| !!! | TTTGTATATAATTTTATATC+AGG | - | chr8.2:17457666-17457685 | MS.gene033134:intron | 10.0% |
| !!! | AATCTACATTTCTTTATTTT+AGG | - | chr8.2:17455967-17455986 | MS.gene033134:intron | 15.0% |
| !!! | AGACTGAATTATAAATTTTA+GGG | - | chr8.2:17458395-17458414 | MS.gene033134:intron | 15.0% |
| !!! | GATAAAAGAAAATTTGTTAT+TGG | + | chr8.2:17458207-17458226 | None:intergenic | 15.0% |
| !!! | TAGACTGAATTATAAATTTT+AGG | - | chr8.2:17458394-17458413 | MS.gene033134:intron | 15.0% |
| !!! | TATTTTAAAAGATATGTGAA+TGG | + | chr8.2:17457090-17457109 | None:intergenic | 15.0% |
| !!! | TTTTTATAATTTTGCATTGT+GGG | - | chr8.2:17455738-17455757 | MS.gene033134:intron | 15.0% |
| !!! | TTTTTTATAATTTTGCATTG+TGG | - | chr8.2:17455737-17455756 | MS.gene033134:intron | 15.0% |
| !! | AAATAAGAAAGAAAGAATGT+TGG | - | chr8.2:17455906-17455925 | MS.gene033134:intron | 20.0% |
| !! | AATAAATTCATTCTTAAACC+TGG | - | chr8.2:17458760-17458779 | MS.gene033134:intron | 20.0% |
| !! | AATAAGAAAGAAAGAATGTT+GGG | - | chr8.2:17455907-17455926 | MS.gene033134:intron | 20.0% |
| !! | ACCAATATTATGAATAATTC+TGG | - | chr8.2:17457287-17457306 | MS.gene033134:intron | 20.0% |
| !! | ATAAATTCATTCTTAAACCT+GGG | - | chr8.2:17458761-17458780 | MS.gene033134:intron | 20.0% |
| !! | CAAAAATTGTTATAAGCATA+TGG | + | chr8.2:17457579-17457598 | None:intergenic | 20.0% |
| !! | TATGCATCAATAGAATTTAT+AGG | + | chr8.2:17456469-17456488 | None:intergenic | 20.0% |
| !! | TGAATTTCGTAATTTCTTTA+TGG | - | chr8.2:17458227-17458246 | MS.gene033134:intron | 20.0% |
| !!! | AAAAATTGCTTGTTCTTTTA+TGG | - | chr8.2:17457781-17457800 | MS.gene033134:intron | 20.0% |
| !!! | AAAATTGCTTGTTCTTTTAT+GGG | - | chr8.2:17457782-17457801 | MS.gene033134:intron | 20.0% |
| !!! | ATAATTATAGTTCAAGTTTC+AGG | + | chr8.2:17458365-17458384 | None:intergenic | 20.0% |
| !!! | ATTTTTATTCTTTAGCATAG+CGG | - | chr8.2:17455943-17455962 | MS.gene033134:intron | 20.0% |
| !!! | CATATGCTTATAACAATTTT+TGG | - | chr8.2:17457577-17457596 | MS.gene033134:CDS | 20.0% |
| !!! | GGAATTTTTTATGTGTAATA+TGG | - | chr8.2:17456662-17456681 | MS.gene033134:intron | 20.0% |
| !!! | TTATGCTTGATTTTTCTTTT+GGG | - | chr8.2:17455697-17455716 | MS.gene033134:intron | 20.0% |
| !!! | TTCTTTATTTTAGGTTTCAA+TGG | - | chr8.2:17455976-17455995 | MS.gene033134:intron | 20.0% |
| ! | AAAAACATGCAAAAAGGATT+AGG | + | chr8.2:17455511-17455530 | None:intergenic | 25.0% |
| ! | AAAACATGCAAAAAGGATTA+GGG | + | chr8.2:17455510-17455529 | None:intergenic | 25.0% |
| ! | AATTTCCCGATAAAAATATC+AGG | + | chr8.2:17457830-17457849 | None:intergenic | 25.0% |
| ! | ACAAGTGATAATAATGTCAT+TGG | - | chr8.2:17458569-17458588 | MS.gene033134:intron | 25.0% |
| ! | ATTAGCAAAAACATGCAAAA+AGG | + | chr8.2:17455517-17455536 | None:intergenic | 25.0% |
| ! | ATTCATGTTGTAAAACCATT+AGG | + | chr8.2:17457398-17457417 | None:intergenic | 25.0% |
| ! | CCTTTATTAGATTTCTTACA+GGG | + | chr8.2:17458021-17458040 | None:intergenic | 25.0% |
| ! | GATAACTTGAGATTAAAAAC+TGG | - | chr8.2:17456770-17456789 | MS.gene033134:intron | 25.0% |
| ! | GCCAGAATTATTCATAATAT+TGG | + | chr8.2:17457291-17457310 | None:intergenic | 25.0% |
| ! | GTGATGCATGATAAATATTA+GGG | + | chr8.2:17456570-17456589 | None:intergenic | 25.0% |
| ! | TAAAGAAAAGAGATGAGAAA+AGG | + | chr8.2:17457426-17457445 | None:intergenic | 25.0% |
| ! | TAATTTCTTTATGGTTGACT+GGG | - | chr8.2:17458236-17458255 | MS.gene033134:intron | 25.0% |
| ! | TACAATAGGAATTTAGAGAA+GGG | - | chr8.2:17456641-17456660 | MS.gene033134:intron | 25.0% |
| ! | TAGCTTATGACATATTCATA+AGG | + | chr8.2:17456122-17456141 | None:intergenic | 25.0% |
| ! | TATATAGTTGCAATTGGAAA+AGG | - | chr8.2:17458595-17458614 | MS.gene033134:intron | 25.0% |
| ! | TATGTAGACACGTTAATAAT+TGG | + | chr8.2:17457020-17457039 | None:intergenic | 25.0% |
| ! | TCTATTGATGCATAATTTGA+CGG | - | chr8.2:17456475-17456494 | MS.gene033134:CDS | 25.0% |
| ! | TGTTTATATATAGTGTCTCT+TGG | - | chr8.2:17456819-17456838 | MS.gene033134:intron | 25.0% |
| !! | AAAAGAACAAGCAATTTTTC+AGG | + | chr8.2:17457780-17457799 | None:intergenic | 25.0% |
| !! | GTTATGCTTGATTTTTCTTT+TGG | - | chr8.2:17455696-17455715 | MS.gene033134:intron | 25.0% |
| !! | GTTGATCTTGTTTATGATAT+TGG | - | chr8.2:17455586-17455605 | MS.gene033134:intron | 25.0% |
| !! | TATGCTTGATTTTTCTTTTG+GGG | - | chr8.2:17455698-17455717 | MS.gene033134:intron | 25.0% |
| !! | TCTTGTTTATGATATTGGTT+AGG | - | chr8.2:17455591-17455610 | MS.gene033134:intron | 25.0% |
| !!! | ATGTGAGCTTTTTTTCTTAA+CGG | - | chr8.2:17456734-17456753 | MS.gene033134:intron | 25.0% |
| !!! | CAGTGATTTTGATTTTTTCA+GGG | + | chr8.2:17457264-17457283 | None:intergenic | 25.0% |
| !!! | TAGCATTTGTTTTGATTAGT+TGG | - | chr8.2:17458433-17458452 | MS.gene033134:intron | 25.0% |
| !!! | TCTTTATTTCCTTCTCTTTT+TGG | - | chr8.2:17457440-17457459 | MS.gene033134:intron | 25.0% |
| !!! | TTGTTTTCTTTTGAGTATAG+TGG | - | chr8.2:17457463-17457482 | MS.gene033134:intron | 25.0% |
| AAAAGAGATGAGAAAAGGAA+AGG | + | chr8.2:17457421-17457440 | None:intergenic | 30.0% | |
| AAGAGTAAAGAAGGGAATAA+CGG | + | chr8.2:17457870-17457889 | None:intergenic | 30.0% | |
| AATGGAATGATTGAACACTT+GGG | - | chr8.2:17455994-17456013 | MS.gene033134:intron | 30.0% | |
| AATTATCTCTTTAGGCAAGT+TGG | - | chr8.2:17456611-17456630 | MS.gene033134:intron | 30.0% | |
| AATTTCTTTATGGTTGACTG+GGG | - | chr8.2:17458237-17458256 | MS.gene033134:intron | 30.0% | |
| AGAAAACAACCAAAAAGAGA+AGG | + | chr8.2:17457452-17457471 | None:intergenic | 30.0% | |
| AGCAGAATAATTGAACATAG+AGG | - | chr8.2:17458461-17458480 | MS.gene033134:intron | 30.0% | |
| AGCGTTTAATATCACATCAA+AGG | - | chr8.2:17456216-17456235 | MS.gene033134:intron | 30.0% | |
| CCCTGTAAGAAATCTAATAA+AGG | - | chr8.2:17458018-17458037 | MS.gene033134:intron | 30.0% | |
| CGTTACTGTGATTCTATTAA+TGG | - | chr8.2:17456935-17456954 | MS.gene033134:CDS | 30.0% | |
| CTACAATAGGAATTTAGAGA+AGG | - | chr8.2:17456640-17456659 | MS.gene033134:intron | 30.0% | |
| GCCTTTATTAGATTTCTTAC+AGG | + | chr8.2:17458022-17458041 | None:intergenic | 30.0% | |
| GGTGATGCATGATAAATATT+AGG | + | chr8.2:17456571-17456590 | None:intergenic | 30.0% | |
| GTAATTTCTTTATGGTTGAC+TGG | - | chr8.2:17458235-17458254 | MS.gene033134:intron | 30.0% | |
| TACTGATCTCAAATTTACAG+TGG | - | chr8.2:17457910-17457929 | MS.gene033134:intron | 30.0% | |
| TACTGTGATTCTATTAATGG+CGG | - | chr8.2:17456938-17456957 | MS.gene033134:CDS | 30.0% | |
| TAGATCTAGATAATGTGTAC+TGG | + | chr8.2:17458518-17458537 | None:intergenic | 30.0% | |
| TATTAAACGCTTGTTTCGAT+TGG | + | chr8.2:17456207-17456226 | None:intergenic | 30.0% | |
| TATTGGGGAATTATCTCTTT+AGG | - | chr8.2:17456603-17456622 | MS.gene033134:intron | 30.0% | |
| TGAATCTCATCTCATTAGTT+AGG | - | chr8.2:17456311-17456330 | MS.gene033134:intron | 30.0% | |
| TGGATCTATATAGTTGCAAT+TGG | - | chr8.2:17458589-17458608 | MS.gene033134:intron | 30.0% | |
| ! | ACTTTTACTTCGCAAAACTA+CGG | - | chr8.2:17457954-17457973 | MS.gene033134:intron | 30.0% |
| ! | ATGTTCAACATTTTGCCTAA+TGG | - | chr8.2:17457380-17457399 | MS.gene033134:intron | 30.0% |
| ! | GTTTTTGCTCAAAAAGTTGA+TGG | - | chr8.2:17458288-17458307 | MS.gene033134:intron | 30.0% |
| !! | AACTTTTTGAGCAAAAACTC+TGG | + | chr8.2:17458286-17458305 | None:intergenic | 30.0% |
| !! | ATGCTCAATCTCATTTTGAT+TGG | - | chr8.2:17456690-17456709 | MS.gene033134:intron | 30.0% |
| !! | ATTATGAATAATTCTGGCTC+AGG | - | chr8.2:17457293-17457312 | MS.gene033134:intron | 30.0% |
| !! | GCTGTTTTCATAAACTATCA+TGG | - | chr8.2:17456069-17456088 | MS.gene033134:intron | 30.0% |
| !! | GTACCACCTGATATTTTTAT+CGG | - | chr8.2:17457821-17457840 | MS.gene033134:intron | 30.0% |
| !! | TACCACCTGATATTTTTATC+GGG | - | chr8.2:17457822-17457841 | MS.gene033134:intron | 30.0% |
| !!! | CATTTGTTTTGATTAGTTGG+AGG | - | chr8.2:17458436-17458455 | MS.gene033134:intron | 30.0% |
| !!! | GCAGTGATTTTGATTTTTTC+AGG | + | chr8.2:17457265-17457284 | None:intergenic | 30.0% |
| !!! | TCAATCTCATTTTGATTGGT+AGG | - | chr8.2:17456694-17456713 | MS.gene033134:intron | 30.0% |
| !!! | TGCATTGTGGGTTTTATTAT+AGG | - | chr8.2:17455750-17455769 | MS.gene033134:intron | 30.0% |
| !!! | TTGATTTTTTCAGGGAACTT+CGG | + | chr8.2:17457256-17457275 | None:intergenic | 30.0% |
| !!! | TTGGTGACTTTTGTTTTCTT+TGG | - | chr8.2:17458620-17458639 | MS.gene033134:CDS | 30.0% |
| AAAAGTCTCTCTCTTTCTCA+AGG | + | chr8.2:17457940-17457959 | None:intergenic | 35.0% | |
| ACAGCATTCATAGTTTGACT+TGG | + | chr8.2:17459033-17459052 | None:intergenic | 35.0% | |
| ACCAGCATACTCTAATATTG+GGG | - | chr8.2:17456588-17456607 | MS.gene033134:intron | 35.0% | |
| ACCTAACGTATATACCTCTT+TGG | + | chr8.2:17457555-17457574 | None:intergenic | 35.0% | |
| ACTGACATATTGTATACCAC+AGG | + | chr8.2:17457738-17457757 | None:intergenic | 35.0% | |
| AGATCAGTAATCTGTGAAAC+AGG | + | chr8.2:17457899-17457918 | None:intergenic | 35.0% | |
| AGGCAAAATGTTGAACATCT+TGG | + | chr8.2:17457378-17457397 | None:intergenic | 35.0% | |
| ATGCAAAAAGGATTAGGGTT+AGG | + | chr8.2:17455505-17455524 | None:intergenic | 35.0% | |
| ATGGATAGTGCATACTTTGT+CGG | - | chr8.2:17455404-17455423 | MS.gene033134:CDS | 35.0% | |
| ATGGATCTTGTTAAGTGGAT+GGG | - | chr8.2:17458324-17458343 | MS.gene033134:intron | 35.0% | |
| ATTCATTCTTAAACCTGGGT+TGG | - | chr8.2:17458765-17458784 | MS.gene033134:intron | 35.0% | |
| CAACAAGCTGAAAATTGACA+AGG | - | chr8.2:17455837-17455856 | MS.gene033134:intron | 35.0% | |
| CAATGGAATGATTGAACACT+TGG | - | chr8.2:17455993-17456012 | MS.gene033134:intron | 35.0% | |
| CACCAGCATACTCTAATATT+GGG | - | chr8.2:17456587-17456606 | MS.gene033134:intron | 35.0% | |
| CACTGAGAAATATGAATGCA+TGG | + | chr8.2:17457133-17457152 | None:intergenic | 35.0% | |
| CTGACATATTGTATACCACA+GGG | + | chr8.2:17457737-17457756 | None:intergenic | 35.0% | |
| GAAGCATAGTGGTATGTTAT+AGG | + | chr8.2:17456351-17456370 | None:intergenic | 35.0% | |
| GAATCAGAGATTACATCACA+CGG | + | chr8.2:17458109-17458128 | None:intergenic | 35.0% | |
| TAACACTTCATGGACTTCTT+AGG | + | chr8.2:17457617-17457636 | None:intergenic | 35.0% | |
| TCACCAGCATACTCTAATAT+TGG | - | chr8.2:17456586-17456605 | MS.gene033134:intron | 35.0% | |
| TGACATATTGTATACCACAG+GGG | + | chr8.2:17457736-17457755 | None:intergenic | 35.0% | |
| TGCAAAAAGGATTAGGGTTA+GGG | + | chr8.2:17455504-17455523 | None:intergenic | 35.0% | |
| TTCCCGATAAAAATATCAGG+TGG | + | chr8.2:17457827-17457846 | None:intergenic | 35.0% | |
| TTGACATGGATCTTGTTAAG+TGG | - | chr8.2:17458319-17458338 | MS.gene033134:intron | 35.0% | |
| TTGTTACATGTTCTCTATGC+AGG | - | chr8.2:17458894-17458913 | MS.gene033134:intron | 35.0% | |
| ! | AGCTTGACTTTTACACTGAT+GGG | + | chr8.2:17458835-17458854 | None:intergenic | 35.0% |
| ! | CAGCATTCATAGTTTGACTT+GGG | + | chr8.2:17459032-17459051 | None:intergenic | 35.0% |
| ! | CTGTTTCTTTAACCATCACA+AGG | - | chr8.2:17458658-17458677 | MS.gene033134:CDS | 35.0% |
| ! | CTTTTACTTCGCAAAACTAC+GGG | - | chr8.2:17457955-17457974 | MS.gene033134:intron | 35.0% |
| ! | TCCAAAGAGGTATATACGTT+AGG | - | chr8.2:17457551-17457570 | MS.gene033134:CDS | 35.0% |
| ! | TGAAAAAAGAGGAAGCATAG+TGG | + | chr8.2:17456362-17456381 | None:intergenic | 35.0% |
| !! | TTTTTGAGCAAAAACTCTGG+CGG | + | chr8.2:17458283-17458302 | None:intergenic | 35.0% |
| !!! | TGCTTCCTCTTTTTTCAACT+CGG | - | chr8.2:17456365-17456384 | MS.gene033134:intron | 35.0% |
| AACACTTGGGTCATGTAACA+CGG | - | chr8.2:17456007-17456026 | MS.gene033134:intron | 40.0% | |
| AAGAACTAGAAGCTAACCAG+AGG | + | chr8.2:17457342-17457361 | None:intergenic | 40.0% | |
| AAGACTTATCCCACTAAGTG+GGG | + | chr8.2:17458161-17458180 | None:intergenic | 40.0% | |
| AAGCACTTGTGACACTCTTT+GGG | + | chr8.2:17456159-17456178 | None:intergenic | 40.0% | |
| AAGTTGGCTAAGGCTACAAT+AGG | - | chr8.2:17456627-17456646 | MS.gene033134:intron | 40.0% | |
| AGCTAACCAGAGGTTCTATT+AGG | + | chr8.2:17457332-17457351 | None:intergenic | 40.0% | |
| AGGAGACGAAAGAGTAAAGA+AGG | + | chr8.2:17457879-17457898 | None:intergenic | 40.0% | |
| ATCTTGTTAAGTGGATGGGA+TGG | - | chr8.2:17458328-17458347 | MS.gene033134:intron | 40.0% | |
| ATTTGGGGACATGTGAAGTA+TGG | - | chr8.2:17456403-17456422 | MS.gene033134:intron | 40.0% | |
| CAAGACTTATCCCACTAAGT+GGG | + | chr8.2:17458162-17458181 | None:intergenic | 40.0% | |
| CACGGAACAAGAGTCAAATT+AGG | + | chr8.2:17458091-17458110 | None:intergenic | 40.0% | |
| CAGAGTTACAATCCTTGTGA+TGG | + | chr8.2:17458673-17458692 | None:intergenic | 40.0% | |
| CATCACAAGGATTGTAACTC+TGG | - | chr8.2:17458671-17458690 | MS.gene033134:CDS | 40.0% | |
| CATGGATCTTGTTAAGTGGA+TGG | - | chr8.2:17458323-17458342 | MS.gene033134:intron | 40.0% | |
| CCAGAATTACAAACTTCTGC+AGG | - | chr8.2:17455807-17455826 | MS.gene033134:intron | 40.0% | |
| CCTGCAGAAGTTTGTAATTC+TGG | + | chr8.2:17455810-17455829 | None:intergenic | 40.0% | |
| CGTCAATAGTGTGTTTCTCA+AGG | - | chr8.2:17456443-17456462 | MS.gene033134:intron | 40.0% | |
| GAAACAGAATTTGCACCGTT+TGG | + | chr8.2:17457640-17457659 | None:intergenic | 40.0% | |
| GAGAAACACACTATTGACGA+TGG | + | chr8.2:17456442-17456461 | None:intergenic | 40.0% | |
| GATTCAGACTTTGTCCAAAG+AGG | - | chr8.2:17457538-17457557 | MS.gene033134:CDS | 40.0% | |
| GCAAAAAGGATTAGGGTTAG+GGG | + | chr8.2:17455503-17455522 | None:intergenic | 40.0% | |
| GGAGACGAAAGAGTAAAGAA+GGG | + | chr8.2:17457878-17457897 | None:intergenic | 40.0% | |
| GGCTTAACGTGACTATCATT+TGG | - | chr8.2:17456840-17456859 | MS.gene033134:intron | 40.0% | |
| GTATCCGATTGCTCTGATTT+GGG | - | chr8.2:17456387-17456406 | MS.gene033134:intron | 40.0% | |
| GTTGCAATTGGAAAAGGCTT+TGG | - | chr8.2:17458601-17458620 | MS.gene033134:intron | 40.0% | |
| TAAGCACTTGTGACACTCTT+TGG | + | chr8.2:17456160-17456179 | None:intergenic | 40.0% | |
| TCCCCAATATTAGAGTATGC+TGG | + | chr8.2:17456592-17456611 | None:intergenic | 40.0% | |
| TCTTGTTAAGTGGATGGGAT+GGG | - | chr8.2:17458329-17458348 | MS.gene033134:intron | 40.0% | |
| TGCTGTACAATGCCAAATGA+TGG | - | chr8.2:17455624-17455643 | MS.gene033134:intron | 40.0% | |
| TTTGGGGACATGTGAAGTAT+GGG | - | chr8.2:17456404-17456423 | MS.gene033134:intron | 40.0% | |
| TTTGTATGCCACTGATGCAA+AGG | - | chr8.2:17458939-17458958 | MS.gene033134:intron | 40.0% | |
| ! | CAGCTTGACTTTTACACTGA+TGG | + | chr8.2:17458836-17458855 | None:intergenic | 40.0% |
| ! | GCTTATTTGAGTTTATCCCC+TGG | + | chr8.2:17456185-17456204 | None:intergenic | 40.0% |
| ! | GGATACCGAGTTGAAAAAAG+AGG | + | chr8.2:17456373-17456392 | None:intergenic | 40.0% |
| ! | GTCCATGAAGTGTTACCAAA+CGG | - | chr8.2:17457622-17457641 | MS.gene033134:intron | 40.0% |
| ! | TATCCGATTGCTCTGATTTG+GGG | - | chr8.2:17456388-17456407 | MS.gene033134:intron | 40.0% |
| !! | ATCAGGTGGTACAGTTTTAG+TGG | + | chr8.2:17457813-17457832 | None:intergenic | 40.0% |
| !! | GAAGTTAGCAGGCTTGTTAA+AGG | - | chr8.2:17456872-17456891 | MS.gene033134:intron | 40.0% |
| !! | GGAATAACGGACAAACAATG+AGG | + | chr8.2:17457857-17457876 | None:intergenic | 40.0% |
| !! | TCTGGTTAGCTTCTAGTTCT+TGG | - | chr8.2:17457341-17457360 | MS.gene033134:intron | 40.0% |
| !! | TGATGGTTCTGACATTGACA+TGG | - | chr8.2:17458305-17458324 | MS.gene033134:intron | 40.0% |
| !!! | ACCACGTTCTGAAGGTATTT+TGG | + | chr8.2:17458795-17458814 | None:intergenic | 40.0% |
| !!! | CCACGTTCTGAAGGTATTTT+GGG | + | chr8.2:17458794-17458813 | None:intergenic | 40.0% |
| AAGGATTAGGGTTAGGGGTT+TGG | + | chr8.2:17455498-17455517 | None:intergenic | 45.0% | |
| ACAACTTGGAGTTCCTCCAA+TGG | - | chr8.2:17456906-17456925 | MS.gene033134:intron | 45.0% | |
| ACACTTGGGTCATGTAACAC+GGG | - | chr8.2:17456008-17456027 | MS.gene033134:intron | 45.0% | |
| ACCTTAACTCTTCGCTCAAC+AGG | + | chr8.2:17457224-17457243 | None:intergenic | 45.0% | |
| AGGAACTCCAAGTTGTCCAA+AGG | + | chr8.2:17456902-17456921 | None:intergenic | 45.0% | |
| AGGAGTTGTTCCAATGCACA+AGG | - | chr8.2:17455660-17455679 | MS.gene033134:intron | 45.0% | |
| AGTAACGTTTCAGCCATTGG+AGG | + | chr8.2:17456922-17456941 | None:intergenic | 45.0% | |
| AGTCTCTCTCTTTCTCAAGG+CGG | + | chr8.2:17457937-17457956 | None:intergenic | 45.0% | |
| AGTTGTTCCAATGCACAAGG+TGG | - | chr8.2:17455663-17455682 | MS.gene033134:intron | 45.0% | |
| ATAGTGCATACTTTGTCGGC+AGG | - | chr8.2:17455408-17455427 | MS.gene033134:CDS | 45.0% | |
| ATATTAGGGCTGCATGAACG+AGG | + | chr8.2:17456556-17456575 | None:intergenic | 45.0% | |
| ATGAACGAGGTTGTGGAACA+AGG | + | chr8.2:17456543-17456562 | None:intergenic | 45.0% | |
| CACAGTAACGTTTCAGCCAT+TGG | + | chr8.2:17456925-17456944 | None:intergenic | 45.0% | |
| CACTATTGACGATGGAAGCA+TGG | + | chr8.2:17456434-17456453 | None:intergenic | 45.0% | |
| CATATGTCAGACTCCAGAAG+TGG | - | chr8.2:17457988-17458007 | MS.gene033134:intron | 45.0% | |
| CCAAGACTTATCCCACTAAG+TGG | + | chr8.2:17458163-17458182 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGTCT+TGG | - | chr8.2:17458160-17458179 | MS.gene033134:intron | 45.0% | |
| CCCAAAATACCTTCAGAACG+TGG | - | chr8.2:17458791-17458810 | MS.gene033134:intron | 45.0% | |
| CTTGTTAAGTGGATGGGATG+GGG | - | chr8.2:17458330-17458349 | MS.gene033134:intron | 45.0% | |
| CTTTATGGTTGACTGGGGAT+GGG | - | chr8.2:17458242-17458261 | MS.gene033134:intron | 45.0% | |
| GATGCGTCACATCCATCATT+TGG | + | chr8.2:17455639-17455658 | None:intergenic | 45.0% | |
| GCAGGAACGAGATTCTGAAT+TGG | - | chr8.2:17455426-17455445 | MS.gene033134:CDS | 45.0% | |
| GGCAGCATATTGAAGTTAGC+AGG | - | chr8.2:17456861-17456880 | MS.gene033134:intron | 45.0% | |
| GGCGACGAATATAGGCATAA+TGG | - | chr8.2:17455385-17455404 | MS.gene033134:CDS | 45.0% | |
| GGTATCCGATTGCTCTGATT+TGG | - | chr8.2:17456386-17456405 | MS.gene033134:intron | 45.0% | |
| GTGAGAGATTGAGCTGAAGT+AGG | + | chr8.2:17455460-17455479 | None:intergenic | 45.0% | |
| GTTGAGCGAAGAGTTAAGGT+CGG | - | chr8.2:17457224-17457243 | MS.gene033134:CDS | 45.0% | |
| TATGACTGACCACGTTCTGA+AGG | + | chr8.2:17458803-17458822 | None:intergenic | 45.0% | |
| TCCTGTTGAGCGAAGAGTTA+AGG | - | chr8.2:17457220-17457239 | MS.gene033134:CDS | 45.0% | |
| TCTTTATGGTTGACTGGGGA+TGG | - | chr8.2:17458241-17458260 | MS.gene033134:intron | 45.0% | |
| TGATGCAAAGGAATCAGCAC+TGG | - | chr8.2:17458951-17458970 | MS.gene033134:intron | 45.0% | |
| TGTCACAAGTGCTTATGCCA+GGG | - | chr8.2:17456165-17456184 | MS.gene033134:intron | 45.0% | |
| TGTCCCCAAATCAGAGCAAT+CGG | + | chr8.2:17456394-17456413 | None:intergenic | 45.0% | |
| ! | CACCGTTTGGTAACACTTCA+TGG | + | chr8.2:17457627-17457646 | None:intergenic | 45.0% |
| ! | CTCTTTAGGCAAGTTGGCTA+AGG | - | chr8.2:17456617-17456636 | MS.gene033134:intron | 45.0% |
| ! | GATATTGGTTAGGCTGCATC+TGG | - | chr8.2:17455601-17455620 | MS.gene033134:intron | 45.0% |
| ! | GCTTGTTAAAGGCAGACCTT+TGG | - | chr8.2:17456883-17456902 | MS.gene033134:intron | 45.0% |
| !! | ATGATGGATGTGACGCATCA+AGG | - | chr8.2:17455640-17455659 | MS.gene033134:intron | 45.0% |
| !! | GGTTAGCTTCTAGTTCTTGG+TGG | - | chr8.2:17457344-17457363 | MS.gene033134:intron | 45.0% |
| !! | TGCTGATTCCTTTGCATCAG+TGG | + | chr8.2:17458950-17458969 | None:intergenic | 45.0% |
| !!! | GTATTTTGGGTTACCAACCC+AGG | + | chr8.2:17458781-17458800 | None:intergenic | 45.0% |
| !!! | TATTTTTATTTTTATTTTGT+AGG | - | chr8.2:17457189-17457208 | MS.gene033134:CDS | 5.0% |
| AAGCCATTCAGGTCAAGTGG+GGG | - | chr8.2:17457488-17457507 | MS.gene033134:intron | 50.0% | |
| ACAGGGATATCCTCCACTTC+TGG | + | chr8.2:17458004-17458023 | None:intergenic | 50.0% | |
| AGGCAGACCTTTGGACAACT+TGG | - | chr8.2:17456892-17456911 | MS.gene033134:intron | 50.0% | |
| ATGTCAGACTCCAGAAGTGG+AGG | - | chr8.2:17457991-17458010 | MS.gene033134:intron | 50.0% | |
| CAAGCCATTCAGGTCAAGTG+GGG | - | chr8.2:17457487-17457506 | MS.gene033134:intron | 50.0% | |
| CCAAGCCATTCAGGTCAAGT+GGG | - | chr8.2:17457486-17457505 | MS.gene033134:intron | 50.0% | |
| CTGGGTCCTAATAGAACCTC+TGG | - | chr8.2:17457323-17457342 | MS.gene033134:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.2:17458157-17458176 | None:intergenic | 50.0% | |
| GTAACAGCCACCTTGTGCAT+TGG | + | chr8.2:17455673-17455692 | None:intergenic | 50.0% | |
| GTATAGTGGCCAAGCCATTC+AGG | - | chr8.2:17457477-17457496 | MS.gene033134:intron | 50.0% | |
| GTCACAAGTGCTTATGCCAG+GGG | - | chr8.2:17456166-17456185 | MS.gene033134:intron | 50.0% | |
| GTGTCACAAGTGCTTATGCC+AGG | - | chr8.2:17456164-17456183 | MS.gene033134:intron | 50.0% | |
| TAAGTGGATGGGATGGGGAA+TGG | - | chr8.2:17458335-17458354 | MS.gene033134:intron | 50.0% | |
| ! | ATTGACGATGGAAGCATGGC+TGG | + | chr8.2:17456430-17456449 | None:intergenic | 50.0% |
| !! | TATACCACAGGGGAGCATCA+GGG | + | chr8.2:17457726-17457745 | None:intergenic | 50.0% |
| AGCCATTCAGGTCAAGTGGG+GGG | - | chr8.2:17457489-17457508 | MS.gene033134:intron | 55.0% | |
| ATGGTTGACTGGGGATGGGA+CGG | - | chr8.2:17458246-17458265 | MS.gene033134:intron | 55.0% | |
| ATTTCCCTGATGCTCCCCTG+TGG | - | chr8.2:17457719-17457738 | MS.gene033134:intron | 55.0% | |
| CCCACTTGACCTGAATGGCT+TGG | + | chr8.2:17457489-17457508 | None:intergenic | 55.0% | |
| GCCAAGCCATTCAGGTCAAG+TGG | - | chr8.2:17457485-17457504 | MS.gene033134:intron | 55.0% | |
| GCGAAGAGTTAAGGTCGGCA+AGG | - | chr8.2:17457229-17457248 | MS.gene033134:CDS | 55.0% | |
| TTGAGCCGACCCCACTTAGT+GGG | - | chr8.2:17458149-17458168 | MS.gene033134:intron | 55.0% | |
| ! | TCTGGCTCAGGCAACACACT+GGG | - | chr8.2:17457305-17457324 | MS.gene033134:intron | 55.0% |
| ! | TGGGGTCGGCTCAACACTAT+TGG | + | chr8.2:17458143-17458162 | None:intergenic | 55.0% |
| !! | GTATACCACAGGGGAGCATC+AGG | + | chr8.2:17457727-17457746 | None:intergenic | 55.0% |
| !! | TTCTGGCTCAGGCAACACAC+TGG | - | chr8.2:17457304-17457323 | MS.gene033134:intron | 55.0% |
| GCCATTCAGGTCAAGTGGGG+GGG | - | chr8.2:17457490-17457509 | MS.gene033134:intron | 60.0% | |
| GGGCTGCATGAACGAGGTTG+TGG | + | chr8.2:17456550-17456569 | None:intergenic | 60.0% | |
| GTTGAGCCGACCCCACTTAG+TGG | - | chr8.2:17458148-17458167 | MS.gene033134:intron | 60.0% | |
| TGGTTGACTGGGGATGGGAC+GGG | - | chr8.2:17458247-17458266 | MS.gene033134:intron | 60.0% | |
| GCCCCCCCACTTGACCTGAA+TGG | + | chr8.2:17457494-17457513 | None:intergenic | 65.0% | |
| TTCAGGTCAAGTGGGGGGGC+AGG | - | chr8.2:17457494-17457513 | MS.gene033134:intron | 65.0% | |
| AGGTCAAGTGGGGGGGCAGG+TGG | - | chr8.2:17457497-17457516 | MS.gene033134:intron | 70.0% | |
| GGTCAAGTGGGGGGGCAGGT+GGG | - | chr8.2:17457498-17457517 | MS.gene033134:intron | 70.0% | |
| GTCAAGTGGGGGGGCAGGTG+GGG | - | chr8.2:17457499-17457518 | MS.gene033134:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17455383 | 17459092 | 17455383 | ID=MS.gene033134 |
| chr8.2 | mRNA | 17455383 | 17459092 | 17455383 | ID=MS.gene033134.t1;Parent=MS.gene033134 |
| chr8.2 | exon | 17458985 | 17459092 | 17458985 | ID=MS.gene033134.t1.exon1;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17458985 | 17459092 | 17458985 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17458794 | 17458862 | 17458794 | ID=MS.gene033134.t1.exon2;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17458794 | 17458862 | 17458794 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17458617 | 17458703 | 17458617 | ID=MS.gene033134.t1.exon3;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17458617 | 17458703 | 17458617 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17457503 | 17457609 | 17457503 | ID=MS.gene033134.t1.exon4;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17457503 | 17457609 | 17457503 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17457131 | 17457264 | 17457131 | ID=MS.gene033134.t1.exon5;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17457131 | 17457264 | 17457131 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17456916 | 17456992 | 17456916 | ID=MS.gene033134.t1.exon6;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17456916 | 17456992 | 17456916 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17456454 | 17456567 | 17456454 | ID=MS.gene033134.t1.exon7;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17456454 | 17456567 | 17456454 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| chr8.2 | exon | 17455383 | 17455559 | 17455383 | ID=MS.gene033134.t1.exon8;Parent=MS.gene033134.t1 |
| chr8.2 | CDS | 17455383 | 17455559 | 17455383 | ID=cds.MS.gene033134.t1;Parent=MS.gene033134.t1 |
| Gene Sequence |
| Protein sequence |
