Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58445.t1 | XP_003609049.1 | 99.7 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 9.80E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58445.t1 | Q9FJJ5 | 69.4 | 265 | 75 | 2 | 1 | 262 | 1 | 262 | 5.9e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58445.t1 | G7JQX9 | 99.7 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 7.1e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene58445 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene051642 | MS.gene58445 | 0.825894 | 3.65E-54 | -1.69E-46 |
| MS.gene051885 | MS.gene58445 | 0.813574 | 2.39E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene58445 | 0.800874 | 1.17E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58445 | MS.gene03589 | PPI |
| MS.gene58445 | MS.gene06926 | PPI |
| MS.gene58445 | MS.gene09543 | PPI |
| MS.gene58445 | MS.gene06707 | PPI |
| MS.gene58445 | MS.gene018958 | PPI |
| MS.gene58445 | MS.gene09540 | PPI |
| MS.gene58445 | MS.gene20245 | PPI |
| MS.gene58445 | MS.gene015202 | PPI |
| MS.gene58445 | MS.gene033134 | PPI |
| MS.gene58445 | MS.gene50990 | PPI |
| MS.gene015206 | MS.gene58445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58445.t1 | MTR_4g108330 | 99.655 | 290 | 1 | 0 | 1 | 290 | 1 | 290 | 0.0 | 601 |
| MS.gene58445.t1 | MTR_0036s0210 | 76.190 | 273 | 60 | 3 | 1 | 271 | 1 | 270 | 8.71e-154 | 431 |
| MS.gene58445.t1 | MTR_5g016520 | 56.071 | 280 | 105 | 4 | 1 | 266 | 1 | 276 | 4.39e-104 | 306 |
| MS.gene58445.t1 | MTR_2072s0010 | 78.846 | 52 | 11 | 0 | 37 | 88 | 1 | 52 | 1.12e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58445.t1 | AT5G62500 | 68.914 | 267 | 77 | 2 | 1 | 264 | 1 | 264 | 2.91e-135 | 384 |
| MS.gene58445.t1 | AT3G47690 | 69.888 | 269 | 68 | 4 | 1 | 266 | 1 | 259 | 1.97e-134 | 382 |
| MS.gene58445.t1 | AT5G67270 | 52.574 | 272 | 108 | 3 | 1 | 255 | 1 | 268 | 6.36e-100 | 296 |
Find 58 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCAGAAGTTTGTAATTC+TGG | 0.195394 | 8.1:+16794793 | None:intergenic |
| CGTTACTGTGATTCTATTAA+TGG | 0.196750 | 8.1:-16793665 | MS.gene58445:CDS |
| GCCAGAATTATTCATAATAT+TGG | 0.260420 | 8.1:+16793312 | None:intergenic |
| GCGAAAATGGCGACGAATAT+AGG | 0.272527 | 8.1:-16795222 | None:intergenic |
| ACCAATATTATGAATAATTC+TGG | 0.280217 | 8.1:-16793313 | MS.gene58445:CDS |
| TACCAGCAAGGAGCTAGTTT+TGG | 0.281303 | 8.1:+16791517 | None:intergenic |
| ACAGGGATATCCTCCACTTC+TGG | 0.363729 | 8.1:+16792599 | None:intergenic |
| GAAGTTAGCAGGCTTGTTAA+AGG | 0.368713 | 8.1:-16793728 | MS.gene58445:CDS |
| ACCTAACGTATATACCTCTT+TGG | 0.375890 | 8.1:+16793048 | None:intergenic |
| GTATAGTGGCCAAGCCATTC+AGG | 0.388153 | 8.1:-16793123 | MS.gene58445:intron |
| CACAGTAACGTTTCAGCCAT+TGG | 0.394635 | 8.1:+16793678 | None:intergenic |
| AGCTAACCAGAGGTTCTATT+AGG | 0.400370 | 8.1:+16793271 | None:intergenic |
| ACCTTAACTCTTCGCTCAAC+AGG | 0.406563 | 8.1:+16793379 | None:intergenic |
| GATGCGTCACATCCATCATT+TGG | 0.413789 | 8.1:+16794963 | None:intergenic |
| TGCTGATTCCTTTGCATCAG+TGG | 0.422807 | 8.1:+16791653 | None:intergenic |
| GCTTGTTAAAGGCAGACCTT+TGG | 0.429462 | 8.1:-16793717 | MS.gene58445:CDS |
| AGGCAGACCTTTGGACAACT+TGG | 0.430840 | 8.1:-16793708 | MS.gene58445:CDS |
| GGCGACGAATATAGGCATAA+TGG | 0.437973 | 8.1:-16795214 | MS.gene58445:CDS |
| TCCTGTTGAGCGAAGAGTTA+AGG | 0.440147 | 8.1:-16793380 | MS.gene58445:CDS |
| GCCAAGCCATTCAGGTCAAG+TGG | 0.449870 | 8.1:-16793115 | MS.gene58445:CDS |
| GGCAGCATATTGAAGTTAGC+AGG | 0.450143 | 8.1:-16793739 | MS.gene58445:intron |
| CCCACTTGACCTGAATGGCT+TGG | 0.452772 | 8.1:+16793114 | None:intergenic |
| GATATTGGTTAGGCTGCATC+TGG | 0.461979 | 8.1:-16794998 | MS.gene58445:intron |
| GCAGGAACGAGATTCTGAAT+TGG | 0.472018 | 8.1:-16795173 | MS.gene58445:CDS |
| ATGGATAGTGCATACTTTGT+CGG | 0.478923 | 8.1:-16795195 | MS.gene58445:CDS |
| ATTATGAATAATTCTGGCTC+AGG | 0.480706 | 8.1:-16793307 | MS.gene58445:CDS |
| CTGGGTCCTAATAGAACCTC+TGG | 0.483064 | 8.1:-16793277 | MS.gene58445:intron |
| CCAAGCCATTCAGGTCAAGT+GGG | 0.506200 | 8.1:-16793114 | MS.gene58445:CDS |
| GATTCAGACTTTGTCCAAAG+AGG | 0.513628 | 8.1:-16793062 | MS.gene58445:intron |
| ACAGCATTCATAGTTTGACT+TGG | 0.516250 | 8.1:+16791570 | None:intergenic |
| CCAGAATTACAAACTTCTGC+AGG | 0.520419 | 8.1:-16794793 | MS.gene58445:CDS |
| GCCATTCAGGTCAAGTGGGG+GGG | 0.520542 | 8.1:-16793110 | MS.gene58445:CDS |
| GTAACAGCCACCTTGTGCAT+TGG | 0.529289 | 8.1:+16794929 | None:intergenic |
| CAAGCCATTCAGGTCAAGTG+GGG | 0.556541 | 8.1:-16793113 | MS.gene58445:CDS |
| ATGATGGATGTGACGCATCA+AGG | 0.557465 | 8.1:-16794959 | MS.gene58445:CDS |
| TTTGTATGCCACTGATGCAA+AGG | 0.562050 | 8.1:-16791661 | MS.gene58445:CDS |
| TGATGCAAAGGAATCAGCAC+TGG | 0.562436 | 8.1:-16791649 | MS.gene58445:CDS |
| AAGCCATTCAGGTCAAGTGG+GGG | 0.563374 | 8.1:-16793112 | MS.gene58445:CDS |
| TGCTGTACAATGCCAAATGA+TGG | 0.564839 | 8.1:-16794975 | MS.gene58445:CDS |
| CAGCATTCATAGTTTGACTT+GGG | 0.565837 | 8.1:+16791571 | None:intergenic |
| AAAAGTCTCTCTCTTTCTCA+AGG | 0.572348 | 8.1:+16792663 | None:intergenic |
| TTCTGGCTCAGGCAACACAC+TGG | 0.577044 | 8.1:-16793296 | MS.gene58445:CDS |
| AGCCATTCAGGTCAAGTGGG+GGG | 0.577781 | 8.1:-16793111 | MS.gene58445:CDS |
| ATAGTGCATACTTTGTCGGC+AGG | 0.594763 | 8.1:-16795191 | MS.gene58445:CDS |
| ACAACTTGGAGTTCCTCCAA+TGG | 0.595027 | 8.1:-16793694 | MS.gene58445:CDS |
| TACTGTGATTCTATTAATGG+CGG | 0.608916 | 8.1:-16793662 | MS.gene58445:CDS |
| TCTGGCTCAGGCAACACACT+GGG | 0.611070 | 8.1:-16793295 | MS.gene58445:CDS |
| CATATGTCAGACTCCAGAAG+TGG | 0.613330 | 8.1:-16792612 | MS.gene58445:CDS |
| ATGTCAGACTCCAGAAGTGG+AGG | 0.615946 | 8.1:-16792609 | MS.gene58445:CDS |
| CAACAAGCTGAAAATTGACA+AGG | 0.632418 | 8.1:-16794763 | MS.gene58445:intron |
| TACTGATCTCAAATTTACAG+TGG | 0.646076 | 8.1:-16792690 | MS.gene58445:CDS |
| AGGAACTCCAAGTTGTCCAA+AGG | 0.646182 | 8.1:+16793701 | None:intergenic |
| AGTAACGTTTCAGCCATTGG+AGG | 0.647456 | 8.1:+16793681 | None:intergenic |
| GTGAGAGATTGAGCTGAAGT+AGG | 0.649304 | 8.1:+16795142 | None:intergenic |
| GCGAAGAGTTAAGGTCGGCA+AGG | 0.651666 | 8.1:-16793371 | MS.gene58445:CDS |
| AGGAGTTGTTCCAATGCACA+AGG | 0.665845 | 8.1:-16794939 | MS.gene58445:intron |
| GTTGAGCGAAGAGTTAAGGT+CGG | 0.693286 | 8.1:-16793376 | MS.gene58445:CDS |
| AGTCTCTCTCTTTCTCAAGG+CGG | 0.725031 | 8.1:+16792666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTTCTTTATTATAATT+AGG | - | chr8.1:16792390-16792409 | MS.gene58445:intron | 10.0% |
| !! | TAAAATTATATACAAATAAC+TGG | + | chr8.1:16793808-16793827 | None:intergenic | 10.0% |
| !!! | TGAACTATAATTATTTTTTT+TGG | - | chr8.1:16794517-16794536 | MS.gene58445:intron | 10.0% |
| !!! | TTTGTATATAATTTTATATC+AGG | - | chr8.1:16793812-16793831 | MS.gene58445:intron | 10.0% |
| !!! | AATCTACATTTCTTTATTTT+AGG | - | chr8.1:16792113-16792132 | MS.gene58445:intron | 15.0% |
| !!! | AGACTGAATTATAAATTTTA+GGG | - | chr8.1:16794541-16794560 | MS.gene58445:intron | 15.0% |
| !!! | GATAAAAGAAAATTTGTTAT+TGG | + | chr8.1:16794353-16794372 | None:intergenic | 15.0% |
| !!! | TAGACTGAATTATAAATTTT+AGG | - | chr8.1:16794540-16794559 | MS.gene58445:intron | 15.0% |
| !!! | TATTTTAAAAGATATGTGAA+TGG | + | chr8.1:16793236-16793255 | None:intergenic | 15.0% |
| !!! | TTTTTATAATTTTGCATTGT+GGG | - | chr8.1:16791884-16791903 | MS.gene58445:intron | 15.0% |
| !!! | TTTTTTATAATTTTGCATTG+TGG | - | chr8.1:16791883-16791902 | MS.gene58445:intron | 15.0% |
| !! | AAATAAGAAAGAAAGAATGT+TGG | - | chr8.1:16792052-16792071 | MS.gene58445:intron | 20.0% |
| !! | AATAAATTCATTCTTAAACC+TGG | - | chr8.1:16794906-16794925 | MS.gene58445:intron | 20.0% |
| !! | AATAAGAAAGAAAGAATGTT+GGG | - | chr8.1:16792053-16792072 | MS.gene58445:intron | 20.0% |
| !! | ACCAATATTATGAATAATTC+TGG | - | chr8.1:16793433-16793452 | MS.gene58445:intron | 20.0% |
| !! | ATAAATTCATTCTTAAACCT+GGG | - | chr8.1:16794907-16794926 | MS.gene58445:intron | 20.0% |
| !! | CAAAAATTGTTATAAGCATA+TGG | + | chr8.1:16793725-16793744 | None:intergenic | 20.0% |
| !! | TATGCATCAATAGAATTTAT+AGG | + | chr8.1:16792615-16792634 | None:intergenic | 20.0% |
| !! | TGAATTTCGTAATTTCTTTA+TGG | - | chr8.1:16794373-16794392 | MS.gene58445:intron | 20.0% |
| !!! | AAAAATTGCTTGTTCTTTTA+TGG | - | chr8.1:16793927-16793946 | MS.gene58445:intron | 20.0% |
| !!! | AAAATTGCTTGTTCTTTTAT+GGG | - | chr8.1:16793928-16793947 | MS.gene58445:intron | 20.0% |
| !!! | ATAATTATAGTTCAAGTTTC+AGG | + | chr8.1:16794511-16794530 | None:intergenic | 20.0% |
| !!! | ATTTTTATTCTTTAGCATAG+CGG | - | chr8.1:16792089-16792108 | MS.gene58445:intron | 20.0% |
| !!! | CATATGCTTATAACAATTTT+TGG | - | chr8.1:16793723-16793742 | MS.gene58445:CDS | 20.0% |
| !!! | GGAATTTTTTATGTGTAATA+TGG | - | chr8.1:16792808-16792827 | MS.gene58445:intron | 20.0% |
| !!! | TTATGCTTGATTTTTCTTTT+GGG | - | chr8.1:16791844-16791863 | MS.gene58445:intron | 20.0% |
| !!! | TTCTTTATTTTAGGTTTCAA+TGG | - | chr8.1:16792122-16792141 | MS.gene58445:intron | 20.0% |
| ! | AAAAACATGCAAAAAGGATT+AGG | + | chr8.1:16791658-16791677 | None:intergenic | 25.0% |
| ! | AAAACATGCAAAAAGGATTA+GGG | + | chr8.1:16791657-16791676 | None:intergenic | 25.0% |
| ! | AATTTCCCGATAAAAATATC+AGG | + | chr8.1:16793976-16793995 | None:intergenic | 25.0% |
| ! | ACAAGTGATAATAATGTCAT+TGG | - | chr8.1:16794715-16794734 | MS.gene58445:intron | 25.0% |
| ! | ATTAGCAAAAACATGCAAAA+AGG | + | chr8.1:16791664-16791683 | None:intergenic | 25.0% |
| ! | ATTCATGTTGTAAAACCATT+AGG | + | chr8.1:16793544-16793563 | None:intergenic | 25.0% |
| ! | CCTTTATTAGATTTCTTACA+GGG | + | chr8.1:16794167-16794186 | None:intergenic | 25.0% |
| ! | GATAACTTGAGATTAAAAAC+TGG | - | chr8.1:16792916-16792935 | MS.gene58445:intron | 25.0% |
| ! | GCCAGAATTATTCATAATAT+TGG | + | chr8.1:16793437-16793456 | None:intergenic | 25.0% |
| ! | GTGATGCATGATAAATATTA+GGG | + | chr8.1:16792716-16792735 | None:intergenic | 25.0% |
| ! | TAAAGAAAAGAGATGAGAAA+AGG | + | chr8.1:16793572-16793591 | None:intergenic | 25.0% |
| ! | TAATTTCTTTATGGTTGACT+GGG | - | chr8.1:16794382-16794401 | MS.gene58445:intron | 25.0% |
| ! | TACAATAGGAATTTAGAGAA+GGG | - | chr8.1:16792787-16792806 | MS.gene58445:intron | 25.0% |
| ! | TAGCTTATGACATATTCATA+AGG | + | chr8.1:16792268-16792287 | None:intergenic | 25.0% |
| ! | TATATAGTTGCAATTGGAAA+AGG | - | chr8.1:16794741-16794760 | MS.gene58445:intron | 25.0% |
| ! | TATGTAGACACGTTAATAAT+TGG | + | chr8.1:16793166-16793185 | None:intergenic | 25.0% |
| ! | TCTATTGATGCATAATTTGA+CGG | - | chr8.1:16792621-16792640 | MS.gene58445:CDS | 25.0% |
| ! | TGTTTATATATAGTGTCTCT+TGG | - | chr8.1:16792965-16792984 | MS.gene58445:intron | 25.0% |
| !! | AAAAGAACAAGCAATTTTTC+AGG | + | chr8.1:16793926-16793945 | None:intergenic | 25.0% |
| !! | GTTATGCTTGATTTTTCTTT+TGG | - | chr8.1:16791843-16791862 | MS.gene58445:intron | 25.0% |
| !! | GTTGATCTTGTTTATGATAT+TGG | - | chr8.1:16791733-16791752 | MS.gene58445:intron | 25.0% |
| !! | TATGCTTGATTTTTCTTTTG+GGG | - | chr8.1:16791845-16791864 | MS.gene58445:intron | 25.0% |
| !! | TCTTGTTTATGATATTGGTT+AGG | - | chr8.1:16791738-16791757 | MS.gene58445:intron | 25.0% |
| !!! | ATGTGAGCTTTTTTTCTTAA+CGG | - | chr8.1:16792880-16792899 | MS.gene58445:intron | 25.0% |
| !!! | CAGTGATTTTGATTTTTTCA+GGG | + | chr8.1:16793410-16793429 | None:intergenic | 25.0% |
| !!! | TAGCATTTGTTTTGATTAGT+TGG | - | chr8.1:16794579-16794598 | MS.gene58445:intron | 25.0% |
| !!! | TCTTTATTTCCTTCTCTTTT+TGG | - | chr8.1:16793586-16793605 | MS.gene58445:intron | 25.0% |
| !!! | TTGTTTTCTTTTGAGTATAG+TGG | - | chr8.1:16793609-16793628 | MS.gene58445:intron | 25.0% |
| AAAAGAGATGAGAAAAGGAA+AGG | + | chr8.1:16793567-16793586 | None:intergenic | 30.0% | |
| AAGAGTAAAGAAGGGAATAA+CGG | + | chr8.1:16794016-16794035 | None:intergenic | 30.0% | |
| AATGGAATGATTGAACACTT+GGG | - | chr8.1:16792140-16792159 | MS.gene58445:intron | 30.0% | |
| AATTATCTCTTTAGGCAAGT+TGG | - | chr8.1:16792757-16792776 | MS.gene58445:intron | 30.0% | |
| AATTTCTTTATGGTTGACTG+GGG | - | chr8.1:16794383-16794402 | MS.gene58445:intron | 30.0% | |
| AGAAAACAACCAAAAAGAGA+AGG | + | chr8.1:16793598-16793617 | None:intergenic | 30.0% | |
| AGCAGAATAATTGAACATAG+AGG | - | chr8.1:16794607-16794626 | MS.gene58445:intron | 30.0% | |
| AGCGTTTAATATCACATCAA+AGG | - | chr8.1:16792362-16792381 | MS.gene58445:intron | 30.0% | |
| CCCTGTAAGAAATCTAATAA+AGG | - | chr8.1:16794164-16794183 | MS.gene58445:intron | 30.0% | |
| CGTTACTGTGATTCTATTAA+TGG | - | chr8.1:16793081-16793100 | MS.gene58445:CDS | 30.0% | |
| CTACAATAGGAATTTAGAGA+AGG | - | chr8.1:16792786-16792805 | MS.gene58445:intron | 30.0% | |
| GCCTTTATTAGATTTCTTAC+AGG | + | chr8.1:16794168-16794187 | None:intergenic | 30.0% | |
| GGTGATGCATGATAAATATT+AGG | + | chr8.1:16792717-16792736 | None:intergenic | 30.0% | |
| GTAATTTCTTTATGGTTGAC+TGG | - | chr8.1:16794381-16794400 | MS.gene58445:intron | 30.0% | |
| TACTGATCTCAAATTTACAG+TGG | - | chr8.1:16794056-16794075 | MS.gene58445:intron | 30.0% | |
| TACTGTGATTCTATTAATGG+CGG | - | chr8.1:16793084-16793103 | MS.gene58445:CDS | 30.0% | |
| TAGATCTAGATAATGTGTAC+TGG | + | chr8.1:16794664-16794683 | None:intergenic | 30.0% | |
| TATTAAACGCTTGTTTCGAT+TGG | + | chr8.1:16792353-16792372 | None:intergenic | 30.0% | |
| TATTGGGGAATTATCTCTTT+AGG | - | chr8.1:16792749-16792768 | MS.gene58445:intron | 30.0% | |
| TGAATCTCATCTCATTAGTT+AGG | - | chr8.1:16792457-16792476 | MS.gene58445:intron | 30.0% | |
| TGGATCTATATAGTTGCAAT+TGG | - | chr8.1:16794735-16794754 | MS.gene58445:intron | 30.0% | |
| ! | ACTTTTACTTCGCAAAACTA+CGG | - | chr8.1:16794100-16794119 | MS.gene58445:intron | 30.0% |
| ! | ATGTTCAACATTTTGCCTAA+TGG | - | chr8.1:16793526-16793545 | MS.gene58445:intron | 30.0% |
| ! | GTTTTTGCTCAAAAAGTTGA+TGG | - | chr8.1:16794434-16794453 | MS.gene58445:intron | 30.0% |
| !! | AACTTTTTGAGCAAAAACTC+TGG | + | chr8.1:16794432-16794451 | None:intergenic | 30.0% |
| !! | ATGCTCAATCTCATTTTGAT+TGG | - | chr8.1:16792836-16792855 | MS.gene58445:intron | 30.0% |
| !! | ATTATGAATAATTCTGGCTC+AGG | - | chr8.1:16793439-16793458 | MS.gene58445:intron | 30.0% |
| !! | GCTGTTTTCATAAACTATCA+TGG | - | chr8.1:16792215-16792234 | MS.gene58445:intron | 30.0% |
| !! | GTACCACCTGATATTTTTAT+CGG | - | chr8.1:16793967-16793986 | MS.gene58445:intron | 30.0% |
| !! | TACCACCTGATATTTTTATC+GGG | - | chr8.1:16793968-16793987 | MS.gene58445:intron | 30.0% |
| !!! | CATTTGTTTTGATTAGTTGG+AGG | - | chr8.1:16794582-16794601 | MS.gene58445:intron | 30.0% |
| !!! | GCAGTGATTTTGATTTTTTC+AGG | + | chr8.1:16793411-16793430 | None:intergenic | 30.0% |
| !!! | TCAATCTCATTTTGATTGGT+AGG | - | chr8.1:16792840-16792859 | MS.gene58445:intron | 30.0% |
| !!! | TGCATTGTGGGTTTTATTAT+AGG | - | chr8.1:16791896-16791915 | MS.gene58445:intron | 30.0% |
| !!! | TTGATTTTTTCAGGGAACTT+CGG | + | chr8.1:16793402-16793421 | None:intergenic | 30.0% |
| !!! | TTGGTGACTTTTGTTTTCTT+TGG | - | chr8.1:16794766-16794785 | MS.gene58445:CDS | 30.0% |
| AAAAGTCTCTCTCTTTCTCA+AGG | + | chr8.1:16794086-16794105 | None:intergenic | 35.0% | |
| ACAGCATTCATAGTTTGACT+TGG | + | chr8.1:16795179-16795198 | None:intergenic | 35.0% | |
| ACCAGCATACTCTAATATTG+GGG | - | chr8.1:16792734-16792753 | MS.gene58445:intron | 35.0% | |
| ACCTAACGTATATACCTCTT+TGG | + | chr8.1:16793701-16793720 | None:intergenic | 35.0% | |
| ACTGACATATTGTATACCAC+AGG | + | chr8.1:16793884-16793903 | None:intergenic | 35.0% | |
| AGATCAGTAATCTGTGAAAC+AGG | + | chr8.1:16794045-16794064 | None:intergenic | 35.0% | |
| AGGCAAAATGTTGAACATCT+TGG | + | chr8.1:16793524-16793543 | None:intergenic | 35.0% | |
| ATGCAAAAAGGATTAGGGTT+AGG | + | chr8.1:16791652-16791671 | None:intergenic | 35.0% | |
| ATGGATAGTGCATACTTTGT+CGG | - | chr8.1:16791551-16791570 | MS.gene58445:CDS | 35.0% | |
| ATGGATCTTGTTAAGTGGAT+GGG | - | chr8.1:16794470-16794489 | MS.gene58445:intron | 35.0% | |
| ATTCATTCTTAAACCTGGGT+TGG | - | chr8.1:16794911-16794930 | MS.gene58445:intron | 35.0% | |
| CAACAAGCTGAAAATTGACA+AGG | - | chr8.1:16791983-16792002 | MS.gene58445:intron | 35.0% | |
| CAATGGAATGATTGAACACT+TGG | - | chr8.1:16792139-16792158 | MS.gene58445:intron | 35.0% | |
| CACCAGCATACTCTAATATT+GGG | - | chr8.1:16792733-16792752 | MS.gene58445:intron | 35.0% | |
| CACTGAGAAATATGAATGCA+TGG | + | chr8.1:16793279-16793298 | None:intergenic | 35.0% | |
| CTGACATATTGTATACCACA+GGG | + | chr8.1:16793883-16793902 | None:intergenic | 35.0% | |
| GAAGCATAGTGGTATGTTAT+AGG | + | chr8.1:16792497-16792516 | None:intergenic | 35.0% | |
| GAATCAGAGATTACATCACA+CGG | + | chr8.1:16794255-16794274 | None:intergenic | 35.0% | |
| TAACACTTCATGGACTTCTT+AGG | + | chr8.1:16793763-16793782 | None:intergenic | 35.0% | |
| TCACCAGCATACTCTAATAT+TGG | - | chr8.1:16792732-16792751 | MS.gene58445:intron | 35.0% | |
| TGACATATTGTATACCACAG+GGG | + | chr8.1:16793882-16793901 | None:intergenic | 35.0% | |
| TGCAAAAAGGATTAGGGTTA+GGG | + | chr8.1:16791651-16791670 | None:intergenic | 35.0% | |
| TTCCCGATAAAAATATCAGG+TGG | + | chr8.1:16793973-16793992 | None:intergenic | 35.0% | |
| TTGACATGGATCTTGTTAAG+TGG | - | chr8.1:16794465-16794484 | MS.gene58445:intron | 35.0% | |
| TTGTTACATGTTCTCTATGC+AGG | - | chr8.1:16795040-16795059 | MS.gene58445:intron | 35.0% | |
| ! | AGCTTGACTTTTACACTGAT+GGG | + | chr8.1:16794981-16795000 | None:intergenic | 35.0% |
| ! | CAGCATTCATAGTTTGACTT+GGG | + | chr8.1:16795178-16795197 | None:intergenic | 35.0% |
| ! | CTGTTTCTTTAACCATCACA+AGG | - | chr8.1:16794804-16794823 | MS.gene58445:CDS | 35.0% |
| ! | CTTTTACTTCGCAAAACTAC+GGG | - | chr8.1:16794101-16794120 | MS.gene58445:intron | 35.0% |
| ! | GCTTATTTGAGTTTATCCTC+TGG | + | chr8.1:16792331-16792350 | None:intergenic | 35.0% |
| ! | TCCAAAGAGGTATATACGTT+AGG | - | chr8.1:16793697-16793716 | MS.gene58445:CDS | 35.0% |
| ! | TGAAAAAAGAGGAAGCATAG+TGG | + | chr8.1:16792508-16792527 | None:intergenic | 35.0% |
| !! | TTTTTGAGCAAAAACTCTGG+CGG | + | chr8.1:16794429-16794448 | None:intergenic | 35.0% |
| !!! | TGCTTCCTCTTTTTTCAACT+CGG | - | chr8.1:16792511-16792530 | MS.gene58445:intron | 35.0% |
| AACACTTGGGTCATGTAACA+CGG | - | chr8.1:16792153-16792172 | MS.gene58445:intron | 40.0% | |
| AAGAACTAGAAGCTAACCAG+AGG | + | chr8.1:16793488-16793507 | None:intergenic | 40.0% | |
| AAGACTTATCCCACTAAGTG+GGG | + | chr8.1:16794307-16794326 | None:intergenic | 40.0% | |
| AAGCACTTGTGACACTCTTT+GGG | + | chr8.1:16792305-16792324 | None:intergenic | 40.0% | |
| AAGTTGGCTAAGGCTACAAT+AGG | - | chr8.1:16792773-16792792 | MS.gene58445:intron | 40.0% | |
| AGCTAACCAGAGGTTCTATT+AGG | + | chr8.1:16793478-16793497 | None:intergenic | 40.0% | |
| AGGAGACGAAAGAGTAAAGA+AGG | + | chr8.1:16794025-16794044 | None:intergenic | 40.0% | |
| ATCTTGTTAAGTGGATGGGA+TGG | - | chr8.1:16794474-16794493 | MS.gene58445:intron | 40.0% | |
| ATTTGGGGACATGTGAAGTA+TGG | - | chr8.1:16792549-16792568 | MS.gene58445:intron | 40.0% | |
| CAAGACTTATCCCACTAAGT+GGG | + | chr8.1:16794308-16794327 | None:intergenic | 40.0% | |
| CACGGAACAAGAGTCAAATT+AGG | + | chr8.1:16794237-16794256 | None:intergenic | 40.0% | |
| CAGAGTTACAATCCTTGTGA+TGG | + | chr8.1:16794819-16794838 | None:intergenic | 40.0% | |
| CATCACAAGGATTGTAACTC+TGG | - | chr8.1:16794817-16794836 | MS.gene58445:CDS | 40.0% | |
| CATGGATCTTGTTAAGTGGA+TGG | - | chr8.1:16794469-16794488 | MS.gene58445:intron | 40.0% | |
| CCAGAATTACAAACTTCTGC+AGG | - | chr8.1:16791953-16791972 | MS.gene58445:intron | 40.0% | |
| CCTGCAGAAGTTTGTAATTC+TGG | + | chr8.1:16791956-16791975 | None:intergenic | 40.0% | |
| CGTCAATAGTGTGTTTCTCA+AGG | - | chr8.1:16792589-16792608 | MS.gene58445:intron | 40.0% | |
| GAAACAGAATTTGCACCGTT+TGG | + | chr8.1:16793786-16793805 | None:intergenic | 40.0% | |
| GAGAAACACACTATTGACGA+TGG | + | chr8.1:16792588-16792607 | None:intergenic | 40.0% | |
| GATTCAGACTTTGTCCAAAG+AGG | - | chr8.1:16793684-16793703 | MS.gene58445:CDS | 40.0% | |
| GCAAAAAGGATTAGGGTTAG+GGG | + | chr8.1:16791650-16791669 | None:intergenic | 40.0% | |
| GGAGACGAAAGAGTAAAGAA+GGG | + | chr8.1:16794024-16794043 | None:intergenic | 40.0% | |
| GGCTTAACGTGACTATCATT+TGG | - | chr8.1:16792986-16793005 | MS.gene58445:intron | 40.0% | |
| GTATCCGATTGCTCTGATTT+GGG | - | chr8.1:16792533-16792552 | MS.gene58445:intron | 40.0% | |
| GTTGCAATTGGAAAAGGCTT+TGG | - | chr8.1:16794747-16794766 | MS.gene58445:intron | 40.0% | |
| TAAGCACTTGTGACACTCTT+TGG | + | chr8.1:16792306-16792325 | None:intergenic | 40.0% | |
| TCCCCAATATTAGAGTATGC+TGG | + | chr8.1:16792738-16792757 | None:intergenic | 40.0% | |
| TCTTGTTAAGTGGATGGGAT+GGG | - | chr8.1:16794475-16794494 | MS.gene58445:intron | 40.0% | |
| TGCTGTACAATGCCAAATGA+TGG | - | chr8.1:16791771-16791790 | MS.gene58445:intron | 40.0% | |
| TTTGGGGACATGTGAAGTAT+GGG | - | chr8.1:16792550-16792569 | MS.gene58445:intron | 40.0% | |
| TTTGTATGCCACTGATGCAA+AGG | - | chr8.1:16795085-16795104 | MS.gene58445:intron | 40.0% | |
| ! | CAGCTTGACTTTTACACTGA+TGG | + | chr8.1:16794982-16795001 | None:intergenic | 40.0% |
| ! | GGATACCGAGTTGAAAAAAG+AGG | + | chr8.1:16792519-16792538 | None:intergenic | 40.0% |
| ! | GTCCATGAAGTGTTACCAAA+CGG | - | chr8.1:16793768-16793787 | MS.gene58445:intron | 40.0% |
| ! | TATCCGATTGCTCTGATTTG+GGG | - | chr8.1:16792534-16792553 | MS.gene58445:intron | 40.0% |
| !! | ATCAGGTGGTACAGTTTTAG+TGG | + | chr8.1:16793959-16793978 | None:intergenic | 40.0% |
| !! | GAAGTTAGCAGGCTTGTTAA+AGG | - | chr8.1:16793018-16793037 | MS.gene58445:intron | 40.0% |
| !! | GGAATAACGGACAAACAATG+AGG | + | chr8.1:16794003-16794022 | None:intergenic | 40.0% |
| !! | TCTGGTTAGCTTCTAGTTCT+TGG | - | chr8.1:16793487-16793506 | MS.gene58445:intron | 40.0% |
| !! | TGATGGTTCTGACATTGACA+TGG | - | chr8.1:16794451-16794470 | MS.gene58445:intron | 40.0% |
| !!! | ACCACGTTCTGAAGGTATTT+TGG | + | chr8.1:16794941-16794960 | None:intergenic | 40.0% |
| !!! | CCACGTTCTGAAGGTATTTT+GGG | + | chr8.1:16794940-16794959 | None:intergenic | 40.0% |
| AAGGATTAGGGTTAGGGGTT+TGG | + | chr8.1:16791645-16791664 | None:intergenic | 45.0% | |
| ACAACTTGGAGTTCCTCCAA+TGG | - | chr8.1:16793052-16793071 | MS.gene58445:intron | 45.0% | |
| ACACTTGGGTCATGTAACAC+GGG | - | chr8.1:16792154-16792173 | MS.gene58445:intron | 45.0% | |
| ACCTTAACTCTTCGCTCAAC+AGG | + | chr8.1:16793370-16793389 | None:intergenic | 45.0% | |
| AGGAACTCCAAGTTGTCCAA+AGG | + | chr8.1:16793048-16793067 | None:intergenic | 45.0% | |
| AGGAGTTGTTCCAATGCACA+AGG | - | chr8.1:16791807-16791826 | MS.gene58445:intron | 45.0% | |
| AGTAACGTTTCAGCCATTGG+AGG | + | chr8.1:16793068-16793087 | None:intergenic | 45.0% | |
| AGTCTCTCTCTTTCTCAAGG+CGG | + | chr8.1:16794083-16794102 | None:intergenic | 45.0% | |
| AGTTGTTCCAATGCACAAGG+TGG | - | chr8.1:16791810-16791829 | MS.gene58445:intron | 45.0% | |
| ATAGTGCATACTTTGTCGGC+AGG | - | chr8.1:16791555-16791574 | MS.gene58445:CDS | 45.0% | |
| ATATTAGGGCTGCATGAACG+AGG | + | chr8.1:16792702-16792721 | None:intergenic | 45.0% | |
| ATGAACGAGGTTGTGGAACA+AGG | + | chr8.1:16792689-16792708 | None:intergenic | 45.0% | |
| CACAGTAACGTTTCAGCCAT+TGG | + | chr8.1:16793071-16793090 | None:intergenic | 45.0% | |
| CACTATTGACGATGGAAGCA+TGG | + | chr8.1:16792580-16792599 | None:intergenic | 45.0% | |
| CATATGTCAGACTCCAGAAG+TGG | - | chr8.1:16794134-16794153 | MS.gene58445:intron | 45.0% | |
| CCAAGACTTATCCCACTAAG+TGG | + | chr8.1:16794309-16794328 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGTCT+TGG | - | chr8.1:16794306-16794325 | MS.gene58445:intron | 45.0% | |
| CCCAAAATACCTTCAGAACG+TGG | - | chr8.1:16794937-16794956 | MS.gene58445:intron | 45.0% | |
| CTTGTTAAGTGGATGGGATG+GGG | - | chr8.1:16794476-16794495 | MS.gene58445:intron | 45.0% | |
| CTTTATGGTTGACTGGGGAT+GGG | - | chr8.1:16794388-16794407 | MS.gene58445:intron | 45.0% | |
| GATGCGTCACATCCATCATT+TGG | + | chr8.1:16791786-16791805 | None:intergenic | 45.0% | |
| GCAGGAACGAGATTCTGAAT+TGG | - | chr8.1:16791573-16791592 | MS.gene58445:CDS | 45.0% | |
| GGCAGCATATTGAAGTTAGC+AGG | - | chr8.1:16793007-16793026 | MS.gene58445:intron | 45.0% | |
| GGCGACGAATATAGGCATAA+TGG | - | chr8.1:16791532-16791551 | MS.gene58445:CDS | 45.0% | |
| GGTATCCGATTGCTCTGATT+TGG | - | chr8.1:16792532-16792551 | MS.gene58445:intron | 45.0% | |
| GTGAGAGATTGAGCTGAAGT+AGG | + | chr8.1:16791607-16791626 | None:intergenic | 45.0% | |
| GTTGAGCGAAGAGTTAAGGT+CGG | - | chr8.1:16793370-16793389 | MS.gene58445:CDS | 45.0% | |
| TATGACTGACCACGTTCTGA+AGG | + | chr8.1:16794949-16794968 | None:intergenic | 45.0% | |
| TCCTGTTGAGCGAAGAGTTA+AGG | - | chr8.1:16793366-16793385 | MS.gene58445:CDS | 45.0% | |
| TCTTTATGGTTGACTGGGGA+TGG | - | chr8.1:16794387-16794406 | MS.gene58445:intron | 45.0% | |
| TGATGCAAAGGAATCAGCAC+TGG | - | chr8.1:16795097-16795116 | MS.gene58445:intron | 45.0% | |
| TGTCCCCAAATCAGAGCAAT+CGG | + | chr8.1:16792540-16792559 | None:intergenic | 45.0% | |
| ! | CACCGTTTGGTAACACTTCA+TGG | + | chr8.1:16793773-16793792 | None:intergenic | 45.0% |
| ! | CTCTTTAGGCAAGTTGGCTA+AGG | - | chr8.1:16792763-16792782 | MS.gene58445:intron | 45.0% |
| ! | GATATTGGTTAGGCTGCATC+TGG | - | chr8.1:16791748-16791767 | MS.gene58445:intron | 45.0% |
| ! | GCTTGTTAAAGGCAGACCTT+TGG | - | chr8.1:16793029-16793048 | MS.gene58445:intron | 45.0% |
| !! | ATGATGGATGTGACGCATCA+AGG | - | chr8.1:16791787-16791806 | MS.gene58445:intron | 45.0% |
| !! | GGTTAGCTTCTAGTTCTTGG+TGG | - | chr8.1:16793490-16793509 | MS.gene58445:intron | 45.0% |
| !! | TGCTGATTCCTTTGCATCAG+TGG | + | chr8.1:16795096-16795115 | None:intergenic | 45.0% |
| !!! | GTATTTTGGGTTACCAACCC+AGG | + | chr8.1:16794927-16794946 | None:intergenic | 45.0% |
| !!! | TATTTTTATTTTTATTTTGT+AGG | - | chr8.1:16793335-16793354 | MS.gene58445:CDS | 5.0% |
| AAGCCATTCAGGTCAAGTGG+GGG | - | chr8.1:16793634-16793653 | MS.gene58445:intron | 50.0% | |
| ACAGGGATATCCTCCACTTC+TGG | + | chr8.1:16794150-16794169 | None:intergenic | 50.0% | |
| AGGCAGACCTTTGGACAACT+TGG | - | chr8.1:16793038-16793057 | MS.gene58445:intron | 50.0% | |
| ATGTCAGACTCCAGAAGTGG+AGG | - | chr8.1:16794137-16794156 | MS.gene58445:intron | 50.0% | |
| CAAGCCATTCAGGTCAAGTG+GGG | - | chr8.1:16793633-16793652 | MS.gene58445:intron | 50.0% | |
| CCAAGCCATTCAGGTCAAGT+GGG | - | chr8.1:16793632-16793651 | MS.gene58445:intron | 50.0% | |
| CTGGGTCCTAATAGAACCTC+TGG | - | chr8.1:16793469-16793488 | MS.gene58445:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.1:16794303-16794322 | None:intergenic | 50.0% | |
| GTAACAGCCACCTTGTGCAT+TGG | + | chr8.1:16791820-16791839 | None:intergenic | 50.0% | |
| GTATAGTGGCCAAGCCATTC+AGG | - | chr8.1:16793623-16793642 | MS.gene58445:intron | 50.0% | |
| GTCACAAGTGCTTATGCCAG+AGG | - | chr8.1:16792312-16792331 | MS.gene58445:intron | 50.0% | |
| TAAGTGGATGGGATGGGGAA+TGG | - | chr8.1:16794481-16794500 | MS.gene58445:intron | 50.0% | |
| ! | ATTGACGATGGAAGCATGGC+TGG | + | chr8.1:16792576-16792595 | None:intergenic | 50.0% |
| !! | TATACCACAGGGGAGCATCA+GGG | + | chr8.1:16793872-16793891 | None:intergenic | 50.0% |
| AGCCATTCAGGTCAAGTGGG+GGG | - | chr8.1:16793635-16793654 | MS.gene58445:intron | 55.0% | |
| ATGGTTGACTGGGGATGGGA+CGG | - | chr8.1:16794392-16794411 | MS.gene58445:intron | 55.0% | |
| ATTTCCCTGATGCTCCCCTG+TGG | - | chr8.1:16793865-16793884 | MS.gene58445:intron | 55.0% | |
| CCCACTTGACCTGAATGGCT+TGG | + | chr8.1:16793635-16793654 | None:intergenic | 55.0% | |
| GCCAAGCCATTCAGGTCAAG+TGG | - | chr8.1:16793631-16793650 | MS.gene58445:intron | 55.0% | |
| GCGAAGAGTTAAGGTCGGCA+AGG | - | chr8.1:16793375-16793394 | MS.gene58445:CDS | 55.0% | |
| TTGAGCCGACCCCACTTAGT+GGG | - | chr8.1:16794295-16794314 | MS.gene58445:intron | 55.0% | |
| ! | TCTGGCTCAGGCAACACACT+GGG | - | chr8.1:16793451-16793470 | MS.gene58445:intron | 55.0% |
| ! | TGGGGTCGGCTCAACACTAT+TGG | + | chr8.1:16794289-16794308 | None:intergenic | 55.0% |
| !! | GTATACCACAGGGGAGCATC+AGG | + | chr8.1:16793873-16793892 | None:intergenic | 55.0% |
| !! | TTCTGGCTCAGGCAACACAC+TGG | - | chr8.1:16793450-16793469 | MS.gene58445:intron | 55.0% |
| GCCATTCAGGTCAAGTGGGG+GGG | - | chr8.1:16793636-16793655 | MS.gene58445:intron | 60.0% | |
| GGGCTGCATGAACGAGGTTG+TGG | + | chr8.1:16792696-16792715 | None:intergenic | 60.0% | |
| GTTGAGCCGACCCCACTTAG+TGG | - | chr8.1:16794294-16794313 | MS.gene58445:intron | 60.0% | |
| TGGTTGACTGGGGATGGGAC+GGG | - | chr8.1:16794393-16794412 | MS.gene58445:intron | 60.0% | |
| GCCCCCCCACTTGACCTGAA+TGG | + | chr8.1:16793640-16793659 | None:intergenic | 65.0% | |
| TTCAGGTCAAGTGGGGGGGC+AGG | - | chr8.1:16793640-16793659 | MS.gene58445:intron | 65.0% | |
| AGGTCAAGTGGGGGGGCAGG+TGG | - | chr8.1:16793643-16793662 | MS.gene58445:intron | 70.0% | |
| GGTCAAGTGGGGGGGCAGGT+GGG | - | chr8.1:16793644-16793663 | MS.gene58445:intron | 70.0% | |
| GTCAAGTGGGGGGGCAGGTG+GGG | - | chr8.1:16793645-16793664 | MS.gene58445:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16791530 | 16795238 | 16791530 | ID=MS.gene58445 |
| chr8.1 | mRNA | 16791530 | 16795238 | 16791530 | ID=MS.gene58445.t1;Parent=MS.gene58445 |
| chr8.1 | exon | 16795131 | 16795238 | 16795131 | ID=MS.gene58445.t1.exon1;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16795131 | 16795238 | 16795131 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16794940 | 16795008 | 16794940 | ID=MS.gene58445.t1.exon2;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16794940 | 16795008 | 16794940 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16794764 | 16794850 | 16794764 | ID=MS.gene58445.t1.exon3;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16794764 | 16794850 | 16794764 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16793650 | 16793756 | 16793650 | ID=MS.gene58445.t1.exon4;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16793650 | 16793756 | 16793650 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16793278 | 16793411 | 16793278 | ID=MS.gene58445.t1.exon5;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16793278 | 16793411 | 16793278 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16793063 | 16793139 | 16793063 | ID=MS.gene58445.t1.exon6;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16793063 | 16793139 | 16793063 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16792601 | 16792714 | 16792601 | ID=MS.gene58445.t1.exon7;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16792601 | 16792714 | 16792601 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| chr8.1 | exon | 16791530 | 16791706 | 16791530 | ID=MS.gene58445.t1.exon8;Parent=MS.gene58445.t1 |
| chr8.1 | CDS | 16791530 | 16791706 | 16791530 | ID=cds.MS.gene58445.t1;Parent=MS.gene58445.t1 |
| Gene Sequence |
| Protein sequence |
