Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067090.t1 | AES72157.1 | 91.8 | 595 | 47 | 2 | 1 | 594 | 1 | 594 | 4.50E-286 | 993.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067090.t1 | Q8L7E5 | 40.6 | 576 | 317 | 4 | 32 | 592 | 51 | 616 | 2.9e-84 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067090.t1 | G7J364 | 91.8 | 595 | 47 | 2 | 1 | 594 | 1 | 594 | 3.2e-286 | 993.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067090 | MS.gene21929 | PPI |
| MS.gene067090 | MS.gene27182 | PPI |
| MS.gene067090 | MS.gene00765 | PPI |
| MS.gene067090 | MS.gene37411 | PPI |
| MS.gene07091 | MS.gene067090 | PPI |
| MS.gene003010 | MS.gene067090 | PPI |
| MS.gene067090 | MS.gene22271 | PPI |
| MS.gene067090 | MS.gene015001 | PPI |
| MS.gene28843 | MS.gene067090 | PPI |
| MS.gene067090 | MS.gene32800 | PPI |
| MS.gene067090 | MS.gene069778 | PPI |
| MS.gene047484 | MS.gene067090 | PPI |
| MS.gene067090 | MS.gene024720 | PPI |
| MS.gene072669 | MS.gene067090 | PPI |
| MS.gene067090 | MS.gene042816 | PPI |
| MS.gene067090 | MS.gene050436 | PPI |
| MS.gene067090 | MS.gene83287 | PPI |
| MS.gene067090 | MS.gene066515 | PPI |
| MS.gene067090 | MS.gene21699 | PPI |
| MS.gene067090 | MS.gene062634 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067090.t1 | MTR_3g086660 | 93.613 | 595 | 36 | 2 | 1 | 594 | 1 | 594 | 0.0 | 1097 |
| MS.gene067090.t1 | MTR_7g017690 | 50.772 | 583 | 234 | 8 | 19 | 592 | 8 | 546 | 1.48e-154 | 457 |
| MS.gene067090.t1 | MTR_2g075260 | 61.644 | 73 | 28 | 0 | 343 | 415 | 3 | 75 | 7.37e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067090.t1 | AT5G11390 | 39.931 | 576 | 321 | 5 | 32 | 592 | 51 | 616 | 9.51e-105 | 332 |
| MS.gene067090.t1 | AT1G68910 | 38.246 | 570 | 284 | 10 | 32 | 585 | 26 | 543 | 1.95e-95 | 304 |
| MS.gene067090.t1 | AT1G68910 | 38.246 | 570 | 284 | 10 | 32 | 585 | 26 | 543 | 1.95e-95 | 304 |
| MS.gene067090.t1 | AT1G68910 | 38.246 | 570 | 284 | 10 | 32 | 585 | 26 | 543 | 1.68e-94 | 303 |
Find 86 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAGTGAGAACAAAATTT+TGG | 0.221789 | 3.4:+80705456 | MS.gene067090:CDS |
| GAATTAAATGTCTCTCTTAT+AGG | 0.225398 | 3.4:+80704162 | MS.gene067090:CDS |
| ATATGATTCTAGAGAAATTC+AGG | 0.264795 | 3.4:+80703864 | MS.gene067090:CDS |
| GACAATGCTAGAGAAATCTT+TGG | 0.326522 | 3.4:+80703813 | MS.gene067090:CDS |
| AGGAAGAAACTATTGATGTT+TGG | 0.331030 | 3.4:+80703938 | MS.gene067090:CDS |
| GGAAGAAACTATTGATGTTT+GGG | 0.335966 | 3.4:+80703939 | MS.gene067090:CDS |
| GGATTCATTGGTTAGAGAAT+TGG | 0.353772 | 3.4:+80702937 | MS.gene067090:CDS |
| ATGCGGGGCTTTGGATTCAT+TGG | 0.365440 | 3.4:+80702925 | MS.gene067090:CDS |
| TCAAATTGAAATGAGAAATC+TGG | 0.371328 | 3.4:-80704032 | None:intergenic |
| TTCCTCATTCAATTCGTCAT+TGG | 0.374240 | 3.4:-80704748 | None:intergenic |
| TGATCTGTTATGCGGGGCTT+TGG | 0.380039 | 3.4:+80702916 | MS.gene067090:CDS |
| TAAAGAGTTGGTAAAACAAC+TGG | 0.382777 | 3.4:+80704878 | MS.gene067090:CDS |
| ATCTCTGCATTAACTTTCAC+AGG | 0.398919 | 3.4:-80703754 | None:intergenic |
| TTGAACTAGCTCGTGCTCTA+AGG | 0.405432 | 3.4:-80703911 | None:intergenic |
| GAATTAAAGTTCTTGAGGAT+TGG | 0.407143 | 3.4:+80704768 | MS.gene067090:CDS |
| ATTTCTCATTTCAATTTGAA+TGG | 0.408575 | 3.4:+80704036 | MS.gene067090:CDS |
| ATATTCCACAATAAGAGATA+TGG | 0.429340 | 3.4:+80704635 | MS.gene067090:CDS |
| AATGATATTGATAATGTAAC+GGG | 0.440170 | 3.4:+80702710 | MS.gene067090:CDS |
| TTCTTGCACTCACCTGGTAG+AGG | 0.440945 | 3.4:+80703015 | MS.gene067090:CDS |
| GATAATGTAACGGGAGATCT+AGG | 0.446753 | 3.4:+80702719 | MS.gene067090:CDS |
| TAACACAATGCTTACAAGGT+TGG | 0.456457 | 3.4:+80702751 | MS.gene067090:CDS |
| AGAAATCTTTGGCAAAAGAA+AGG | 0.460518 | 3.4:+80703824 | MS.gene067090:CDS |
| GAAATCTTTGGCAAAAGAAA+GGG | 0.465484 | 3.4:+80703825 | MS.gene067090:CDS |
| TTGAATTTGATCTGTTATGC+GGG | 0.468552 | 3.4:+80702909 | MS.gene067090:CDS |
| GGGGATTGGTTCAGTTGAAA+AGG | 0.469746 | 3.4:+80702883 | MS.gene067090:CDS |
| TTGATTATGAAGAATGTTTG+AGG | 0.473794 | 3.4:+80703065 | MS.gene067090:CDS |
| TGCTTCCTTCTCTTGGCGCA+AGG | 0.477955 | 3.4:-80704811 | None:intergenic |
| TTAGTAACACAATGCTTACA+AGG | 0.483547 | 3.4:+80702747 | MS.gene067090:CDS |
| GAGAGAGCGTCTTAAAGATC+AGG | 0.485536 | 3.4:+80704908 | MS.gene067090:CDS |
| AAGGATCACATGACGGGGAT+TGG | 0.486251 | 3.4:+80702869 | MS.gene067090:CDS |
| TGCAATATCAGCCCTACTCT+CGG | 0.504349 | 3.4:-80704430 | None:intergenic |
| TGTACTTGATGCCGAGAGTA+GGG | 0.507217 | 3.4:+80704419 | MS.gene067090:CDS |
| TTCAAGCTTAGCTTGAAGCT+CGG | 0.509394 | 3.4:-80704076 | None:intergenic |
| AAGAGAGACATTTAATTCAT+CGG | 0.510995 | 3.4:-80704157 | None:intergenic |
| TCTCTTATAGGTCAGACAAT+TGG | 0.511883 | 3.4:+80704174 | MS.gene067090:CDS |
| TCTCTTAGAGCGAAGACCTC+AGG | 0.515157 | 3.4:-80704246 | None:intergenic |
| ATGAGGAATTAAAGTTCTTG+AGG | 0.515779 | 3.4:+80704763 | MS.gene067090:CDS |
| GGTCTTCGCTCTAAGAGATA+AGG | 0.517933 | 3.4:+80704251 | MS.gene067090:CDS |
| TGCTAAGGACATAGGAATGC+GGG | 0.522660 | 3.4:+80704845 | MS.gene067090:CDS |
| AGCATCTGTTGAGGCTAGCA+AGG | 0.524343 | 3.4:+80704596 | MS.gene067090:CDS |
| TCAATTTGAATGGTTTAAGT+CGG | 0.525218 | 3.4:+80704046 | MS.gene067090:CDS |
| TCAGAGAAGGATCACATGAC+GGG | 0.526939 | 3.4:+80702863 | MS.gene067090:CDS |
| GGTGTGTTCTTGCACTCACC+TGG | 0.529378 | 3.4:+80703009 | MS.gene067090:CDS |
| TGAAAGTGCATTTGCTTGAG+AGG | 0.530792 | 3.4:+80704535 | MS.gene067090:CDS |
| CTTGTTCAAAATAATATCCC+TGG | 0.532216 | 3.4:-80704121 | None:intergenic |
| CTTGAATTTGATCTGTTATG+CGG | 0.537156 | 3.4:+80702908 | MS.gene067090:CDS |
| AGGTTTCTAAAGCTCAAAGT+CGG | 0.541963 | 3.4:+80704685 | MS.gene067090:CDS |
| GGTTTCTAAAGCTCAAAGTC+GGG | 0.542993 | 3.4:+80704686 | MS.gene067090:CDS |
| CTGTACTTGATGCCGAGAGT+AGG | 0.544313 | 3.4:+80704418 | MS.gene067090:CDS |
| GGAATCCTTGCGCCAAGAGA+AGG | 0.546489 | 3.4:+80704806 | MS.gene067090:CDS |
| TCTTGCACTCACCTGGTAGA+GGG | 0.547336 | 3.4:+80703016 | MS.gene067090:CDS |
| ATCAAGTAGCTTGTCTTGCA+AGG | 0.547549 | 3.4:-80703047 | None:intergenic |
| TGTTTGGGAAAGATTGTTTG+AGG | 0.547720 | 3.4:+80703954 | MS.gene067090:CDS |
| ATGATGACTGCTAAGGACAT+AGG | 0.550772 | 3.4:+80704837 | MS.gene067090:CDS |
| TGAAGATACACAGATTCCTT+CGG | 0.554036 | 3.4:+80704221 | MS.gene067090:CDS |
| AGGTAATGAAACCCTCTACC+AGG | 0.569775 | 3.4:-80703027 | None:intergenic |
| TAATGATATTGATAATGTAA+CGG | 0.570804 | 3.4:+80702709 | MS.gene067090:CDS |
| TTGTAGAACAGTTAAATACC+AGG | 0.571068 | 3.4:+80704103 | MS.gene067090:CDS |
| AAGATTCTGAAATTCAACTA+CGG | 0.574802 | 3.4:+80704298 | MS.gene067090:CDS |
| TGTGATGCATTTGGCAACAA+TGG | 0.575787 | 3.4:+80702823 | MS.gene067090:CDS |
| CAATGCACATGAGATTCTGA+TGG | 0.576087 | 3.4:+80703981 | MS.gene067090:CDS |
| ATCCAATGACGAATTGAATG+AGG | 0.577830 | 3.4:+80704746 | MS.gene067090:CDS |
| ATCATTAGATAATGAAACAA+GGG | 0.584912 | 3.4:-80702693 | None:intergenic |
| ATCAGAGAAGGATCACATGA+CGG | 0.588649 | 3.4:+80702862 | MS.gene067090:CDS |
| TGAATTTGAGACATCAGAGA+AGG | 0.594049 | 3.4:+80702850 | MS.gene067090:CDS |
| GGATTGTTGAAGCTAGAGAG+AGG | 0.595590 | 3.4:+80702987 | MS.gene067090:CDS |
| GATAAATGATCATAAGTCAA+AGG | 0.597427 | 3.4:+80704665 | MS.gene067090:CDS |
| ATTCTGATATTCATTCGAAG+AGG | 0.605452 | 3.4:-80704331 | None:intergenic |
| AGAGCACGAGCTAGTTCAAG+CGG | 0.606242 | 3.4:+80703915 | MS.gene067090:CDS |
| AATGGTGAAATCTTCAAAGA+GGG | 0.608575 | 3.4:+80703724 | MS.gene067090:CDS |
| ACAGATTCCTTCGGATCCTG+AGG | 0.614863 | 3.4:+80704230 | MS.gene067090:CDS |
| TGTAGAACAGTTAAATACCA+GGG | 0.618941 | 3.4:+80704104 | MS.gene067090:CDS |
| TAATGGTGAAATCTTCAAAG+AGG | 0.620196 | 3.4:+80703723 | MS.gene067090:CDS |
| GCACGAGCTAGTTCAAGCGG+AGG | 0.624782 | 3.4:+80703918 | MS.gene067090:CDS |
| GCGAAGACCTCAGGATCCGA+AGG | 0.625318 | 3.4:-80704237 | None:intergenic |
| TATGATGCTTCATGTGCTGA+AGG | 0.626432 | 3.4:+80704357 | MS.gene067090:CDS |
| GATTGTTGAAGCTAGAGAGA+GGG | 0.626485 | 3.4:+80702988 | MS.gene067090:CDS |
| TGAATTTGATCTGTTATGCG+GGG | 0.632034 | 3.4:+80702910 | MS.gene067090:CDS |
| GAAGCTAAAACAAATATACA+AGG | 0.633680 | 3.4:+80705483 | MS.gene067090:CDS |
| TATCATTAGATAATGAAACA+AGG | 0.641030 | 3.4:-80702694 | None:intergenic |
| GAATTCAGAAGCATCTGTTG+AGG | 0.650705 | 3.4:+80704587 | MS.gene067090:CDS |
| AAGTCGGGCTGAAAGTGCAG+AGG | 0.666928 | 3.4:+80704701 | MS.gene067090:CDS |
| AATGCACATGAGATTCTGAT+GGG | 0.674287 | 3.4:+80703982 | MS.gene067090:CDS |
| CAGAGAAGGATCACATGACG+GGG | 0.679132 | 3.4:+80702864 | MS.gene067090:CDS |
| CTGCTAAGGACATAGGAATG+CGG | 0.679985 | 3.4:+80704844 | MS.gene067090:CDS |
| GCTAAAACAAATATACAAGG+AGG | 0.695923 | 3.4:+80705486 | MS.gene067090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTACAAATATTTCA+TGG | + | chr3.4:80704969-80704988 | MS.gene067090:intron | 10.0% |
| !!! | TATAAAAGTTTATGTTTTTT+CGG | + | chr3.4:80703679-80703698 | MS.gene067090:intron | 10.0% |
| !! | ACAATATTAGTAATATAAGA+AGG | + | chr3.4:80703550-80703569 | MS.gene067090:intron | 15.0% |
| !! | ATGAAATTCTATGAAATAAA+AGG | - | chr3.4:80705226-80705245 | None:intergenic | 15.0% |
| !! | CAATATTAGTAATATAAGAA+GGG | + | chr3.4:80703551-80703570 | MS.gene067090:intron | 15.0% |
| !! | TAAACAATTAAAAAAAGAGT+GGG | - | chr3.4:80705335-80705354 | None:intergenic | 15.0% |
| !! | TGAAATTCTATGAAATAAAA+GGG | - | chr3.4:80705225-80705244 | None:intergenic | 15.0% |
| !!! | ATAAAAGTTTATGTTTTTTC+GGG | + | chr3.4:80703680-80703699 | MS.gene067090:intron | 15.0% |
| !!! | TAATGATATTGATAATGTAA+CGG | + | chr3.4:80702709-80702728 | MS.gene067090:CDS | 15.0% |
| !! | AAAAATGGCAGTAAAATATA+AGG | - | chr3.4:80705198-80705217 | None:intergenic | 20.0% |
| !! | AAACAATTAAAAAAAGAGTG+GGG | - | chr3.4:80705334-80705353 | None:intergenic | 20.0% |
| !! | ATCATTAGATAATGAAACAA+GGG | - | chr3.4:80702696-80702715 | None:intergenic | 20.0% |
| !! | ATTTCTCATTTCAATTTGAA+TGG | + | chr3.4:80704036-80704055 | MS.gene067090:CDS | 20.0% |
| !! | CATCAATGATATATTGTATA+TGG | + | chr3.4:80705300-80705319 | MS.gene067090:intron | 20.0% |
| !! | GTAAACAATTAAAAAAAGAG+TGG | - | chr3.4:80705336-80705355 | None:intergenic | 20.0% |
| !! | TATCATTAGATAATGAAACA+AGG | - | chr3.4:80702697-80702716 | None:intergenic | 20.0% |
| !! | TTTCACGAAATTGTTAAAAA+TGG | + | chr3.4:80703197-80703216 | MS.gene067090:intron | 20.0% |
| !!! | AATGATATTGATAATGTAAC+GGG | + | chr3.4:80702710-80702729 | MS.gene067090:CDS | 20.0% |
| !!! | TCTTTAAAAAAGATCGAAAT+TGG | + | chr3.4:80703151-80703170 | MS.gene067090:CDS | 20.0% |
| ! | AAATAAAAGGGAGCAAAAAA+TGG | - | chr3.4:80705213-80705232 | None:intergenic | 25.0% |
| ! | AAGAGAGACATTTAATTCAT+CGG | - | chr3.4:80704160-80704179 | None:intergenic | 25.0% |
| ! | AGAAGTTTATAAACATGCAT+TGG | - | chr3.4:80705005-80705024 | None:intergenic | 25.0% |
| ! | ATATTCCACAATAAGAGATA+TGG | + | chr3.4:80704635-80704654 | MS.gene067090:CDS | 25.0% |
| ! | ATCGGTAATTATTGAGAAAA+TGG | + | chr3.4:80703288-80703307 | MS.gene067090:intron | 25.0% |
| ! | ATGAAATGTATTCTCTATCT+TGG | - | chr3.4:80704940-80704959 | None:intergenic | 25.0% |
| ! | ATGCATGTTTATAAACTTCT+AGG | + | chr3.4:80705005-80705024 | MS.gene067090:intron | 25.0% |
| ! | CAAAACATATTACAGACAAA+AGG | - | chr3.4:80703431-80703450 | None:intergenic | 25.0% |
| ! | GAAGCTAAAACAAATATACA+AGG | + | chr3.4:80705483-80705502 | MS.gene067090:CDS | 25.0% |
| ! | GAATTAAATGTCTCTCTTAT+AGG | + | chr3.4:80704162-80704181 | MS.gene067090:CDS | 25.0% |
| ! | GATAAATGATCATAAGTCAA+AGG | + | chr3.4:80704665-80704684 | MS.gene067090:CDS | 25.0% |
| ! | TCAAATTGAAATGAGAAATC+TGG | - | chr3.4:80704035-80704054 | None:intergenic | 25.0% |
| ! | TCAATTTGAATGGTTTAAGT+CGG | + | chr3.4:80704046-80704065 | MS.gene067090:CDS | 25.0% |
| ! | TTGATTATGAAGAATGTTTG+AGG | + | chr3.4:80703065-80703084 | MS.gene067090:CDS | 25.0% |
| !! | AATTTTTGCCAAAATCACAA+TGG | - | chr3.4:80705074-80705093 | None:intergenic | 25.0% |
| !! | ATATGATTCTAGAGAAATTC+AGG | + | chr3.4:80703864-80703883 | MS.gene067090:CDS | 25.0% |
| !! | ATTTTCCATATCTCTTATTG+TGG | - | chr3.4:80704643-80704662 | None:intergenic | 25.0% |
| !! | TAGAGAATTGGATGAATTTT+TGG | + | chr3.4:80702949-80702968 | MS.gene067090:CDS | 25.0% |
| !! | TTTCACAAGGTAATTGATTT+AGG | - | chr3.4:80703454-80703473 | None:intergenic | 25.0% |
| !! | TTTTGCAAAACAATTTCACA+AGG | - | chr3.4:80703467-80703486 | None:intergenic | 25.0% |
| !! | TTTTGGACAGTTTACATTAT+GGG | + | chr3.4:80702966-80702985 | MS.gene067090:CDS | 25.0% |
| !! | TTTTTGGACAGTTTACATTA+TGG | + | chr3.4:80702965-80702984 | MS.gene067090:CDS | 25.0% |
| !!! | AAGATTCTGAAATTCAACTA+CGG | + | chr3.4:80704298-80704317 | MS.gene067090:CDS | 25.0% |
| !!! | TGAAATTGTTTTGCAAAAAG+TGG | + | chr3.4:80703469-80703488 | MS.gene067090:intron | 25.0% |
| AATGGCAGTAAAATATAAGG+AGG | - | chr3.4:80705195-80705214 | None:intergenic | 30.0% | |
| AATGGTGAAATCTTCAAAGA+GGG | + | chr3.4:80703724-80703743 | MS.gene067090:CDS | 30.0% | |
| AGAAATCTTTGGCAAAAGAA+AGG | + | chr3.4:80703824-80703843 | MS.gene067090:CDS | 30.0% | |
| AGGAAGAAACTATTGATGTT+TGG | + | chr3.4:80703938-80703957 | MS.gene067090:CDS | 30.0% | |
| ATGAAGAATATTGAAGTGAC+TGG | + | chr3.4:80703583-80703602 | MS.gene067090:intron | 30.0% | |
| ATGAGGAATTAAAGTTCTTG+AGG | + | chr3.4:80704763-80704782 | MS.gene067090:CDS | 30.0% | |
| ATGGCAGTAAAATATAAGGA+GGG | - | chr3.4:80705194-80705213 | None:intergenic | 30.0% | |
| ATTCTGATATTCATTCGAAG+AGG | - | chr3.4:80704334-80704353 | None:intergenic | 30.0% | |
| CTTGAATTTGATCTGTTATG+CGG | + | chr3.4:80702908-80702927 | MS.gene067090:CDS | 30.0% | |
| CTTGTTCAAAATAATATCCC+TGG | - | chr3.4:80704124-80704143 | None:intergenic | 30.0% | |
| GAAATCTTTGGCAAAAGAAA+GGG | + | chr3.4:80703825-80703844 | MS.gene067090:CDS | 30.0% | |
| GAATTAAAGTTCTTGAGGAT+TGG | + | chr3.4:80704768-80704787 | MS.gene067090:CDS | 30.0% | |
| GAGGATTGGATTCAAAAATA+TGG | + | chr3.4:80704782-80704801 | MS.gene067090:CDS | 30.0% | |
| GATTGGATTCAAAAATATGG+AGG | + | chr3.4:80704785-80704804 | MS.gene067090:CDS | 30.0% | |
| GCTAAAACAAATATACAAGG+AGG | + | chr3.4:80705486-80705505 | MS.gene067090:CDS | 30.0% | |
| GGAAGAAACTATTGATGTTT+GGG | + | chr3.4:80703939-80703958 | MS.gene067090:CDS | 30.0% | |
| TAATGGTGAAATCTTCAAAG+AGG | + | chr3.4:80703723-80703742 | MS.gene067090:CDS | 30.0% | |
| TATATAGTCCAGTGCATATT+TGG | - | chr3.4:80705158-80705177 | None:intergenic | 30.0% | |
| TCACTTAAATAAGCAAGTTG+AGG | + | chr3.4:80705253-80705272 | MS.gene067090:intron | 30.0% | |
| TGTAGAACAGTTAAATACCA+GGG | + | chr3.4:80704104-80704123 | MS.gene067090:CDS | 30.0% | |
| TGTTTGATGAAAACAGGTAA+TGG | + | chr3.4:80703706-80703725 | MS.gene067090:intron | 30.0% | |
| TTAGTAACACAATGCTTACA+AGG | + | chr3.4:80702747-80702766 | MS.gene067090:CDS | 30.0% | |
| TTGAATTTGATCTGTTATGC+GGG | + | chr3.4:80702909-80702928 | MS.gene067090:CDS | 30.0% | |
| TTGTAGAACAGTTAAATACC+AGG | + | chr3.4:80704103-80704122 | MS.gene067090:CDS | 30.0% | |
| ! | AAAAAGTGGTTACTTTCTTG+TGG | + | chr3.4:80703483-80703502 | MS.gene067090:intron | 30.0% |
| ! | AAATTTTGTTCTCACTTGCT+AGG | - | chr3.4:80705456-80705475 | None:intergenic | 30.0% |
| ! | AGCAAGTGAGAACAAAATTT+TGG | + | chr3.4:80705456-80705475 | MS.gene067090:CDS | 30.0% |
| ! | GAAGAGTTGAATCTTTTGAA+AGG | + | chr3.4:80704498-80704517 | MS.gene067090:CDS | 30.0% |
| ! | GAGAAATTTTGTGATGCATT+TGG | + | chr3.4:80702814-80702833 | MS.gene067090:CDS | 30.0% |
| !! | AATTTTGTTCTCACTTGCTA+GGG | - | chr3.4:80705455-80705474 | None:intergenic | 30.0% |
| !! | GGCAAAACTTTTTAAAGAGT+TGG | + | chr3.4:80704866-80704885 | MS.gene067090:CDS | 30.0% |
| !! | TAAAGAGTTGGTAAAACAAC+TGG | + | chr3.4:80704878-80704897 | MS.gene067090:CDS | 30.0% |
| !! | TTGAATCTTTTGAAAGGTGA+TGG | + | chr3.4:80704504-80704523 | MS.gene067090:CDS | 30.0% |
| AATGCACATGAGATTCTGAT+GGG | + | chr3.4:80703982-80704001 | MS.gene067090:CDS | 35.0% | |
| AGCAAAAATGATGACTGCTA+AGG | + | chr3.4:80704830-80704849 | MS.gene067090:CDS | 35.0% | |
| ATCCAATGACGAATTGAATG+AGG | + | chr3.4:80704746-80704765 | MS.gene067090:CDS | 35.0% | |
| ATCTCTGCATTAACTTTCAC+AGG | - | chr3.4:80703757-80703776 | None:intergenic | 35.0% | |
| CTTCAAATCGAAGTTATGTC+AGG | - | chr3.4:80703386-80703405 | None:intergenic | 35.0% | |
| GACAATGCTAGAGAAATCTT+TGG | + | chr3.4:80703813-80703832 | MS.gene067090:CDS | 35.0% | |
| TAACACAATGCTTACAAGGT+TGG | + | chr3.4:80702751-80702770 | MS.gene067090:CDS | 35.0% | |
| TCTCTTATAGGTCAGACAAT+TGG | + | chr3.4:80704174-80704193 | MS.gene067090:CDS | 35.0% | |
| TGAAGATACACAGATTCCTT+CGG | + | chr3.4:80704221-80704240 | MS.gene067090:CDS | 35.0% | |
| TGAATTTGATCTGTTATGCG+GGG | + | chr3.4:80702910-80702929 | MS.gene067090:CDS | 35.0% | |
| TGACTTATTCACATGAACAC+AGG | - | chr3.4:80705371-80705390 | None:intergenic | 35.0% | |
| TGGCAGTAAAATATAAGGAG+GGG | - | chr3.4:80705193-80705212 | None:intergenic | 35.0% | |
| TGTTTGGGAAAGATTGTTTG+AGG | + | chr3.4:80703954-80703973 | MS.gene067090:CDS | 35.0% | |
| TTCCTCATTCAATTCGTCAT+TGG | - | chr3.4:80704751-80704770 | None:intergenic | 35.0% | |
| ! | CCAGTGCATATTTGGAATTA+CGG | - | chr3.4:80705150-80705169 | None:intergenic | 35.0% |
| ! | GGATTCATTGGTTAGAGAAT+TGG | + | chr3.4:80702937-80702956 | MS.gene067090:CDS | 35.0% |
| ! | TGAATTTGAGACATCAGAGA+AGG | + | chr3.4:80702850-80702869 | MS.gene067090:CDS | 35.0% |
| !! | AATCTTTTGAAAGGTGATGG+AGG | + | chr3.4:80704507-80704526 | MS.gene067090:CDS | 35.0% |
| !! | AGGTTTCTAAAGCTCAAAGT+CGG | + | chr3.4:80704685-80704704 | MS.gene067090:CDS | 35.0% |
| !! | TCATTTTTGCTTCCTTCTCT+TGG | - | chr3.4:80704821-80704840 | None:intergenic | 35.0% |
| !!! | TACATTCAGCTAGTTTTCAG+AGG | + | chr3.4:80703119-80703138 | MS.gene067090:CDS | 35.0% |
| ATCAGAGAAGGATCACATGA+CGG | + | chr3.4:80702862-80702881 | MS.gene067090:CDS | 40.0% | |
| ATGATGACTGCTAAGGACAT+AGG | + | chr3.4:80704837-80704856 | MS.gene067090:CDS | 40.0% | |
| CAATGCACATGAGATTCTGA+TGG | + | chr3.4:80703981-80704000 | MS.gene067090:CDS | 40.0% | |
| CCGTAATTCCAAATATGCAC+TGG | + | chr3.4:80705147-80705166 | MS.gene067090:intron | 40.0% | |
| GATTGTTGAAGCTAGAGAGA+GGG | + | chr3.4:80702988-80703007 | MS.gene067090:CDS | 40.0% | |
| GGGACATGTTTGATGAAAAC+AGG | + | chr3.4:80703700-80703719 | MS.gene067090:intron | 40.0% | |
| TATGATGCTTCATGTGCTGA+AGG | + | chr3.4:80704357-80704376 | MS.gene067090:CDS | 40.0% | |
| TGACACTGACACGTTAACAT+CGG | + | chr3.4:80703270-80703289 | MS.gene067090:intron | 40.0% | |
| TGTGATGCATTTGGCAACAA+TGG | + | chr3.4:80702823-80702842 | MS.gene067090:CDS | 40.0% | |
| ! | ACAGTCTGCCATTGTGATTT+TGG | + | chr3.4:80705063-80705082 | MS.gene067090:intron | 40.0% |
| ! | ATCAAGTAGCTTGTCTTGCA+AGG | - | chr3.4:80703050-80703069 | None:intergenic | 40.0% |
| ! | GATAATGTAACGGGAGATCT+AGG | + | chr3.4:80702719-80702738 | MS.gene067090:CDS | 40.0% |
| ! | TAAACTTCTAGGAGCATGTC+TGG | + | chr3.4:80705016-80705035 | MS.gene067090:intron | 40.0% |
| ! | TGAAAGTGCATTTGCTTGAG+AGG | + | chr3.4:80704535-80704554 | MS.gene067090:CDS | 40.0% |
| ! | TTCAAGCTTAGCTTGAAGCT+CGG | - | chr3.4:80704079-80704098 | None:intergenic | 40.0% |
| !! | GAATTCAGAAGCATCTGTTG+AGG | + | chr3.4:80704587-80704606 | MS.gene067090:CDS | 40.0% |
| !! | GGTTTCTAAAGCTCAAAGTC+GGG | + | chr3.4:80704686-80704705 | MS.gene067090:CDS | 40.0% |
| !! | TGGATTAGCTTCGTGTTCTT+CGG | + | chr3.4:80705036-80705055 | MS.gene067090:intron | 40.0% |
| ACATGTGCCTGTATCAGACA+CGG | - | chr3.4:80703352-80703371 | None:intergenic | 45.0% | |
| AGATCGAAATTGGTACGCAG+TGG | + | chr3.4:80703161-80703180 | MS.gene067090:intron | 45.0% | |
| AGGTAATGAAACCCTCTACC+AGG | - | chr3.4:80703030-80703049 | None:intergenic | 45.0% | |
| CGGTGAGTTTGACGAAATCA+CGG | - | chr3.4:80705130-80705149 | None:intergenic | 45.0% | |
| CTGCTAAGGACATAGGAATG+CGG | + | chr3.4:80704844-80704863 | MS.gene067090:CDS | 45.0% | |
| GGATTGTTGAAGCTAGAGAG+AGG | + | chr3.4:80702987-80703006 | MS.gene067090:CDS | 45.0% | |
| TCAGAGAAGGATCACATGAC+GGG | + | chr3.4:80702863-80702882 | MS.gene067090:CDS | 45.0% | |
| TGACACGACATAGACAGAAG+TGG | - | chr3.4:80703329-80703348 | None:intergenic | 45.0% | |
| TGCAATATCAGCCCTACTCT+CGG | - | chr3.4:80704433-80704452 | None:intergenic | 45.0% | |
| TGCTAAGGACATAGGAATGC+GGG | + | chr3.4:80704845-80704864 | MS.gene067090:CDS | 45.0% | |
| TGTACTTGATGCCGAGAGTA+GGG | + | chr3.4:80704419-80704438 | MS.gene067090:CDS | 45.0% | |
| TTGAACTAGCTCGTGCTCTA+AGG | - | chr3.4:80703914-80703933 | None:intergenic | 45.0% | |
| TTGACGAAATCACGGTGACA+CGG | - | chr3.4:80705122-80705141 | None:intergenic | 45.0% | |
| TTGAGGCCTTAGTATGGGAT+GGG | + | chr3.4:80705270-80705289 | MS.gene067090:intron | 45.0% | |
| ! | AGCAAGTTGAGGCCTTAGTA+TGG | + | chr3.4:80705264-80705283 | MS.gene067090:intron | 45.0% |
| ! | GCAAGTTGAGGCCTTAGTAT+GGG | + | chr3.4:80705265-80705284 | MS.gene067090:intron | 45.0% |
| !! | GAGAGAGCGTCTTAAAGATC+AGG | + | chr3.4:80704908-80704927 | MS.gene067090:CDS | 45.0% |
| !! | GGGGATTGGTTCAGTTGAAA+AGG | + | chr3.4:80702883-80702902 | MS.gene067090:CDS | 45.0% |
| !! | GGTCTTCGCTCTAAGAGATA+AGG | + | chr3.4:80704251-80704270 | MS.gene067090:CDS | 45.0% |
| ACAGATTCCTTCGGATCCTG+AGG | + | chr3.4:80704230-80704249 | MS.gene067090:CDS | 50.0% | |
| AGAGCACGAGCTAGTTCAAG+CGG | + | chr3.4:80703915-80703934 | MS.gene067090:CDS | 50.0% | |
| AGCATCTGTTGAGGCTAGCA+AGG | + | chr3.4:80704596-80704615 | MS.gene067090:CDS | 50.0% | |
| AGCTACCCCATCCCATACTA+AGG | - | chr3.4:80705279-80705298 | None:intergenic | 50.0% | |
| CAGAGAAGGATCACATGACG+GGG | + | chr3.4:80702864-80702883 | MS.gene067090:CDS | 50.0% | |
| CTGTACTTGATGCCGAGAGT+AGG | + | chr3.4:80704418-80704437 | MS.gene067090:CDS | 50.0% | |
| GTTGAGGCCTTAGTATGGGA+TGG | + | chr3.4:80705269-80705288 | MS.gene067090:intron | 50.0% | |
| TCTCTTAGAGCGAAGACCTC+AGG | - | chr3.4:80704249-80704268 | None:intergenic | 50.0% | |
| TCTTGCACTCACCTGGTAGA+GGG | + | chr3.4:80703016-80703035 | MS.gene067090:CDS | 50.0% | |
| TGAGGCCTTAGTATGGGATG+GGG | + | chr3.4:80705271-80705290 | MS.gene067090:intron | 50.0% | |
| TGATCTGTTATGCGGGGCTT+TGG | + | chr3.4:80702916-80702935 | MS.gene067090:CDS | 50.0% | |
| TTCTTGCACTCACCTGGTAG+AGG | + | chr3.4:80703015-80703034 | MS.gene067090:CDS | 50.0% | |
| ! | AAGGATCACATGACGGGGAT+TGG | + | chr3.4:80702869-80702888 | MS.gene067090:CDS | 50.0% |
| !! | ATGCGGGGCTTTGGATTCAT+TGG | + | chr3.4:80702925-80702944 | MS.gene067090:CDS | 50.0% |
| CGTGTCACCGTGTCTGATAC+AGG | + | chr3.4:80703342-80703361 | MS.gene067090:intron | 55.0% | |
| GGAATCCTTGCGCCAAGAGA+AGG | + | chr3.4:80704806-80704825 | MS.gene067090:CDS | 55.0% | |
| GGTGTGTTCTTGCACTCACC+TGG | + | chr3.4:80703009-80703028 | MS.gene067090:CDS | 55.0% | |
| TGCTTCCTTCTCTTGGCGCA+AGG | - | chr3.4:80704814-80704833 | None:intergenic | 55.0% | |
| ! | AAGTCGGGCTGAAAGTGCAG+AGG | + | chr3.4:80704701-80704720 | MS.gene067090:CDS | 55.0% |
| GCACGAGCTAGTTCAAGCGG+AGG | + | chr3.4:80703918-80703937 | MS.gene067090:CDS | 60.0% | |
| GCGAAGACCTCAGGATCCGA+AGG | - | chr3.4:80704240-80704259 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80702665 | 80705513 | 80702665 | ID=MS.gene067090 |
| chr3.4 | mRNA | 80702665 | 80705513 | 80702665 | ID=MS.gene067090.t1;Parent=MS.gene067090 |
| chr3.4 | exon | 80702665 | 80703172 | 80702665 | ID=MS.gene067090.t1.exon1;Parent=MS.gene067090.t1 |
| chr3.4 | CDS | 80702665 | 80703172 | 80702665 | ID=cds.MS.gene067090.t1;Parent=MS.gene067090.t1 |
| chr3.4 | exon | 80703722 | 80704929 | 80703722 | ID=MS.gene067090.t1.exon2;Parent=MS.gene067090.t1 |
| chr3.4 | CDS | 80703722 | 80704929 | 80703722 | ID=cds.MS.gene067090.t1;Parent=MS.gene067090.t1 |
| chr3.4 | exon | 80705445 | 80705513 | 80705445 | ID=MS.gene067090.t1.exon3;Parent=MS.gene067090.t1 |
| chr3.4 | CDS | 80705445 | 80705513 | 80705445 | ID=cds.MS.gene067090.t1;Parent=MS.gene067090.t1 |
| Gene Sequence |
| Protein sequence |
