Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28843.t1 | XP_003626013.1 | 96.8 | 724 | 3 | 2 | 1 | 704 | 1 | 724 | 0.00E+00 | 1367.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28843.t1 | Q9M1P7 | 78.6 | 720 | 112 | 7 | 1 | 698 | 1 | 700 | 0.0e+00 | 1099.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28843.t1 | G7KTQ1 | 96.8 | 724 | 3 | 2 | 1 | 704 | 1 | 724 | 0.0e+00 | 1367.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050436 | MS.gene28843 | 0.986154 | 7.56E-166 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28843 | MS.gene87672 | PPI |
| MS.gene036929 | MS.gene28843 | PPI |
| MS.gene28843 | MS.gene75990 | PPI |
| MS.gene28843 | MS.gene78458 | PPI |
| MS.gene28843 | MS.gene067090 | PPI |
| MS.gene28843 | MS.gene98782 | PPI |
| MS.gene28843 | MS.gene27517 | PPI |
| MS.gene28843 | MS.gene44764 | PPI |
| MS.gene28843 | MS.gene92776 | PPI |
| MS.gene28843 | MS.gene022025 | PPI |
| MS.gene28843 | MS.gene62009 | PPI |
| MS.gene28843 | MS.gene75518 | PPI |
| MS.gene28843 | MS.gene77305 | PPI |
| MS.gene28843 | MS.gene071065 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28843.t1 | MTR_7g110000 | 96.823 | 724 | 3 | 2 | 1 | 704 | 1 | 724 | 0.0 | 1425 |
| MS.gene28843.t1 | MTR_3g077670 | 73.115 | 703 | 150 | 9 | 1 | 678 | 1 | 689 | 0.0 | 975 |
| MS.gene28843.t1 | MTR_2g032690 | 73.231 | 650 | 152 | 3 | 1 | 630 | 1 | 648 | 0.0 | 959 |
| MS.gene28843.t1 | MTR_0459s0020 | 58.511 | 658 | 234 | 8 | 1 | 630 | 9 | 655 | 0.0 | 756 |
| MS.gene28843.t1 | MTR_3g107730 | 56.579 | 684 | 245 | 8 | 7 | 659 | 4 | 666 | 0.0 | 754 |
| MS.gene28843.t1 | MTR_1g011840 | 54.839 | 651 | 253 | 5 | 7 | 630 | 3 | 639 | 0.0 | 720 |
| MS.gene28843.t1 | MTR_3g107730 | 60.994 | 523 | 174 | 4 | 7 | 512 | 4 | 513 | 0.0 | 657 |
| MS.gene28843.t1 | MTR_0366s0020 | 53.435 | 655 | 188 | 7 | 1 | 630 | 9 | 571 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28843.t1 | AT3G62270 | 79.828 | 699 | 109 | 6 | 1 | 677 | 1 | 689 | 0.0 | 1118 |
| MS.gene28843.t1 | AT2G47160 | 78.086 | 721 | 120 | 9 | 1 | 700 | 1 | 704 | 0.0 | 1100 |
| MS.gene28843.t1 | AT2G47160 | 75.469 | 746 | 120 | 10 | 1 | 700 | 1 | 729 | 0.0 | 1087 |
| MS.gene28843.t1 | AT3G06450 | 70.525 | 648 | 163 | 6 | 3 | 629 | 5 | 645 | 0.0 | 936 |
| MS.gene28843.t1 | AT3G06450 | 70.525 | 648 | 163 | 6 | 3 | 629 | 5 | 645 | 0.0 | 936 |
| MS.gene28843.t1 | AT3G06450 | 70.525 | 648 | 163 | 6 | 3 | 629 | 5 | 645 | 0.0 | 936 |
| MS.gene28843.t1 | AT3G06450 | 70.525 | 648 | 163 | 6 | 3 | 629 | 5 | 645 | 0.0 | 936 |
| MS.gene28843.t1 | AT1G15460 | 58.974 | 663 | 240 | 8 | 8 | 643 | 13 | 670 | 0.0 | 789 |
| MS.gene28843.t1 | AT1G15460 | 58.974 | 663 | 240 | 8 | 8 | 643 | 13 | 670 | 0.0 | 789 |
| MS.gene28843.t1 | AT1G15460 | 61.248 | 609 | 214 | 4 | 8 | 598 | 13 | 617 | 0.0 | 775 |
| MS.gene28843.t1 | AT1G74810 | 56.231 | 658 | 256 | 6 | 1 | 630 | 1 | 654 | 0.0 | 757 |
| MS.gene28843.t1 | AT1G74810 | 56.231 | 658 | 256 | 6 | 1 | 630 | 1 | 654 | 0.0 | 757 |
| MS.gene28843.t1 | AT1G74810 | 56.231 | 658 | 256 | 6 | 1 | 630 | 1 | 654 | 0.0 | 757 |
| MS.gene28843.t1 | AT1G74810 | 58.158 | 619 | 249 | 4 | 18 | 630 | 8 | 622 | 0.0 | 753 |
| MS.gene28843.t1 | AT1G74810 | 58.158 | 619 | 249 | 4 | 18 | 630 | 8 | 622 | 0.0 | 753 |
| MS.gene28843.t1 | AT5G25430 | 54.776 | 670 | 258 | 11 | 7 | 644 | 9 | 665 | 0.0 | 733 |
| MS.gene28843.t1 | AT4G32510 | 52.967 | 674 | 271 | 6 | 1 | 638 | 1 | 664 | 0.0 | 718 |
| MS.gene28843.t1 | AT4G32510 | 52.555 | 685 | 278 | 7 | 1 | 648 | 1 | 675 | 0.0 | 717 |
| MS.gene28843.t1 | AT1G15460 | 57.996 | 569 | 224 | 7 | 85 | 643 | 1 | 564 | 0.0 | 672 |
| MS.gene28843.t1 | AT1G74810 | 56.159 | 552 | 232 | 4 | 85 | 630 | 1 | 548 | 0.0 | 647 |
| MS.gene28843.t1 | AT1G74810 | 55.534 | 515 | 219 | 4 | 122 | 630 | 1 | 511 | 0.0 | 588 |
Find 165 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGGCTACTTTGCCTTTA+TGG | 0.123064 | 7.4:-5482313 | MS.gene28843:CDS |
| TCATTATGATTTGCTCCTTT+TGG | 0.138425 | 7.4:-5483102 | MS.gene28843:CDS |
| ACATTATTGTGTGGCCTTAT+TGG | 0.170662 | 7.4:-5482977 | MS.gene28843:CDS |
| TGATTCACTTTACAGGATTT+TGG | 0.172961 | 7.4:-5484891 | MS.gene28843:intron |
| GTTCCTGTTGTGTTCATAAT+TGG | 0.189623 | 7.4:-5483233 | MS.gene28843:CDS |
| AATAATGCTATTGTCTTAAA+AGG | 0.213365 | 7.4:+5482071 | None:intergenic |
| TTGTCTTGGTGTTTGGAATC+AGG | 0.217098 | 7.4:+5481454 | None:intergenic |
| ATTTATCTATTTATATGTTT+TGG | 0.242133 | 7.4:-5482032 | MS.gene28843:CDS |
| TGCTTTGATACTATTCTTAC+TGG | 0.270594 | 7.4:-5484069 | MS.gene28843:CDS |
| ACCTGACAATCTCATTTCTT+TGG | 0.287431 | 7.4:+5481498 | None:intergenic |
| CTATTCTTACTGGCCATCTT+AGG | 0.291093 | 7.4:-5484059 | MS.gene28843:CDS |
| CTTTCCCAAAACTGGTTTCC+AGG | 0.295534 | 7.4:+5482276 | None:intergenic |
| TAAACTTTCAATTGCCATAA+AGG | 0.296865 | 7.4:+5482299 | None:intergenic |
| AATACCAACTTCAGTACTTT+GGG | 0.301075 | 7.4:-5482331 | MS.gene28843:CDS |
| TTATTTCTTGTCTTGGTGTT+TGG | 0.301293 | 7.4:+5481447 | None:intergenic |
| AAAGGATCCTTTCCCAAAAC+TGG | 0.307317 | 7.4:+5482268 | None:intergenic |
| AATCTCATTTCTTTGGTCAT+TGG | 0.313846 | 7.4:+5481505 | None:intergenic |
| TTCGCTTTGGTCCTTTCATT+TGG | 0.315725 | 7.4:-5483711 | MS.gene28843:CDS |
| GTTTACCTGGAAACCAGTTT+TGG | 0.316421 | 7.4:-5482281 | MS.gene28843:CDS |
| GCGCCGGGCGACCACGGATT+TGG | 0.326784 | 7.4:+5483404 | None:intergenic |
| GGAGTGGAGCTATTGATCTT+TGG | 0.338665 | 7.4:+5481643 | None:intergenic |
| GCAATACCTGTCATTTCATT+TGG | 0.339007 | 7.4:-5484839 | MS.gene28843:CDS |
| CATTCGAGCAGCTACGAGTA+TGG | 0.339339 | 7.4:-5482508 | MS.gene28843:CDS |
| GATTTCGTATCTTCTCTCTT+TGG | 0.340460 | 7.4:+5483774 | None:intergenic |
| CGACTATGGTGTGCCACTTA+TGG | 0.341912 | 7.4:-5483501 | MS.gene28843:CDS |
| CTTCGTGGAGGTTTGCTAAT+GGG | 0.346782 | 7.4:-5483737 | MS.gene28843:CDS |
| AAAACATATAAATAGATAAA+TGG | 0.347506 | 7.4:+5482034 | None:intergenic |
| CGTTGTTCCTTTACCTCAAC+AGG | 0.355491 | 7.4:+5482420 | None:intergenic |
| CAAGAAGCCGTGGTGAATTT+AGG | 0.358792 | 7.4:-5481681 | MS.gene28843:CDS |
| CCTTCGTGGAGGTTTGCTAA+TGG | 0.359784 | 7.4:-5483738 | MS.gene28843:CDS |
| AACCGCTTTACCCGAATTGC+GGG | 0.360056 | 7.4:-5484020 | MS.gene28843:CDS |
| TTGGGTAGAAACCTGTTTCT+TGG | 0.364718 | 7.4:-5484508 | MS.gene28843:CDS |
| TCTTAAATTATTTCTTGTCT+TGG | 0.364780 | 7.4:+5481440 | None:intergenic |
| TGCCACTTATGGTCCTAGTT+TGG | 0.369045 | 7.4:-5483490 | MS.gene28843:CDS |
| TGCGGTATGACTCCGTTTGC+AGG | 0.370416 | 7.4:+5482947 | None:intergenic |
| CGCCCGGCGCCTATGACAAT+TGG | 0.370935 | 7.4:-5483391 | MS.gene28843:CDS |
| CAAACAACTCTCCCGCAATT+CGG | 0.374938 | 7.4:+5484009 | None:intergenic |
| CGAATTGCGGGAGAGTTGTT+TGG | 0.375063 | 7.4:-5484008 | MS.gene28843:CDS |
| TTCTTTGGTCATTGGACTGT+TGG | 0.381083 | 7.4:+5481513 | None:intergenic |
| GGGAGAAAGTATTGTCTTAG+TGG | 0.386465 | 7.4:+5481951 | None:intergenic |
| TTAGGATCATTTCTTGGTGT+TGG | 0.387898 | 7.4:+5481622 | None:intergenic |
| AAATACCAACTTCAGTACTT+TGG | 0.388661 | 7.4:-5482332 | MS.gene28843:CDS |
| TGCTAATGGGATGTTCGCTT+TGG | 0.391611 | 7.4:-5483724 | MS.gene28843:CDS |
| TTGCAGGAGGAATTCCAATA+AGG | 0.392276 | 7.4:+5482963 | None:intergenic |
| GCACACCATAGTCGGCTATA+AGG | 0.404541 | 7.4:+5483510 | None:intergenic |
| ATCAGTAAGAATGCTAGTTT+AGG | 0.405750 | 7.4:-5482733 | MS.gene28843:CDS |
| CAGCTGCATCCAAGTCTTGA+AGG | 0.411041 | 7.4:+5481907 | None:intergenic |
| TGCTAAAGAAAGACCTGAGT+TGG | 0.415592 | 7.4:-5484527 | MS.gene28843:CDS |
| TGACAATTGGACTGTTGTTA+AGG | 0.418583 | 7.4:-5483378 | MS.gene28843:intron |
| ATATAAATAGATAAATGGTT+TGG | 0.420632 | 7.4:+5482039 | None:intergenic |
| AACCTGTTTCTTGGATGGGC+TGG | 0.422896 | 7.4:-5484499 | MS.gene28843:CDS |
| AGGCGCCTTGGGATACCGTT+TGG | 0.423298 | 7.4:+5483434 | None:intergenic |
| GCTAGTTTAGGACAGTTATA+CGG | 0.423941 | 7.4:-5482721 | MS.gene28843:CDS |
| TGTCTTGGTGTTTGGAATCA+GGG | 0.423999 | 7.4:+5481455 | None:intergenic |
| TTGGACTAAAGAGGCGCCTT+GGG | 0.427252 | 7.4:+5483423 | None:intergenic |
| ACCAAAGAAATGAGATTGTC+AGG | 0.428973 | 7.4:-5481499 | MS.gene28843:CDS |
| CTAACTTGGGTACCTATTGC+TGG | 0.436565 | 7.4:-5482008 | MS.gene28843:CDS |
| AGCACTGCAATCATAGTTGC+TGG | 0.439606 | 7.4:+5483200 | None:intergenic |
| GGAAACATGACTCCAGCAAT+AGG | 0.440092 | 7.4:+5481996 | None:intergenic |
| TCGGTGCTGTGAAAAGTAAA+AGG | 0.440388 | 7.4:+5482250 | None:intergenic |
| AAACAACTCTCCCGCAATTC+GGG | 0.442782 | 7.4:+5484010 | None:intergenic |
| CTTGCTTCCTGTTGAGGTAA+AGG | 0.444141 | 7.4:-5482427 | MS.gene28843:CDS |
| AGTCCTCGGTCTGGCGTAAG+AGG | 0.444825 | 7.4:-5481538 | MS.gene28843:CDS |
| TAACTTGCTTCAATCAGTAT+TGG | 0.448829 | 7.4:-5482391 | MS.gene28843:CDS |
| GTAGAAACCTGTTTCTTGGA+TGG | 0.449097 | 7.4:-5484504 | MS.gene28843:CDS |
| GAACAACTAGAGAGAAATAC+TGG | 0.450622 | 7.4:-5484815 | MS.gene28843:intron |
| ATCCAGCCCATCCAAGAAAC+AGG | 0.452822 | 7.4:+5484497 | None:intergenic |
| CTTCAATCAGTATTGGTTGG+AGG | 0.463638 | 7.4:-5482384 | MS.gene28843:CDS |
| GGAGCTGGTGCTTCTCATAT+CGG | 0.465563 | 7.4:-5481733 | MS.gene28843:CDS |
| AAGGCTAGATCATGGCGTTA+TGG | 0.470484 | 7.4:-5483660 | MS.gene28843:CDS |
| ATGGCAATTGAAAGTTTACC+TGG | 0.470571 | 7.4:-5482294 | MS.gene28843:CDS |
| GCTCCAATTATGAACACAAC+AGG | 0.475392 | 7.4:+5483230 | None:intergenic |
| ATCATTTCTTGGTGTTGGAG+TGG | 0.476671 | 7.4:+5481627 | None:intergenic |
| CTTGGATGCAGCTGAGTATG+AGG | 0.477776 | 7.4:-5481898 | MS.gene28843:CDS |
| TTTGGACTAAAGAGGCGCCT+TGG | 0.478346 | 7.4:+5483422 | None:intergenic |
| TCTAGCAACTCTTAAACATC+AGG | 0.479084 | 7.4:-5482903 | MS.gene28843:intron |
| GGCATTATACACTCAATCAT+TGG | 0.482191 | 7.4:-5484619 | MS.gene28843:CDS |
| AGTCCAAATCCGTGGTCGCC+CGG | 0.483928 | 7.4:-5483407 | MS.gene28843:CDS |
| ATTTACTTGTATCTTCTGCT+CGG | 0.484482 | 7.4:+5482231 | None:intergenic |
| TTGCTTCAATCAGTATTGGT+TGG | 0.485493 | 7.4:-5482387 | MS.gene28843:CDS |
| CGTAGCCTTATAGCCGACTA+TGG | 0.485953 | 7.4:-5483515 | MS.gene28843:CDS |
| TAAGAGGTGTCTGCATTTGA+TGG | 0.489462 | 7.4:+5482680 | None:intergenic |
| TAGAAACCTGTTTCTTGGAT+GGG | 0.489881 | 7.4:-5484503 | MS.gene28843:CDS |
| TCGGGTAAAGCGGTTGATGA+TGG | 0.490490 | 7.4:+5484028 | None:intergenic |
| AGATGACTTGCTTCCTGTTG+AGG | 0.490643 | 7.4:-5482433 | MS.gene28843:CDS |
| GTCCTTGTGCCAGGGACTTG+TGG | 0.493396 | 7.4:-5483811 | MS.gene28843:intron |
| ATTGGAATTCCTCCTGCAAA+CGG | 0.495864 | 7.4:-5482959 | MS.gene28843:CDS |
| GCTAAAGAAAGACCTGAGTT+GGG | 0.505588 | 7.4:-5484526 | MS.gene28843:CDS |
| AGATCATGGCGTTATGGTAG+TGG | 0.507525 | 7.4:-5483654 | MS.gene28843:intron |
| CTTATGGTCCTAGTTTGGAC+AGG | 0.509478 | 7.4:-5483485 | MS.gene28843:CDS |
| GAGAATTAAAAGAGAGGTGC+GGG | 0.510378 | 7.4:+5481587 | None:intergenic |
| AGAAATGAGATTGTCAGGTA+GGG | 0.510643 | 7.4:-5481494 | MS.gene28843:CDS |
| AACAACAGTCCAATTGTCAT+AGG | 0.516200 | 7.4:+5483382 | None:intergenic |
| AAGAGAGGTGCGGGCTCAGA+CGG | 0.517099 | 7.4:+5481596 | None:intergenic |
| CAGCAATCTGAGTTTGGAGC+TGG | 0.517149 | 7.4:-5481748 | MS.gene28843:intron |
| AAGAAATGAGATTGTCAGGT+AGG | 0.518072 | 7.4:-5481495 | MS.gene28843:CDS |
| AGTCCAATTGTCATAGGCGC+CGG | 0.518211 | 7.4:+5483388 | None:intergenic |
| GATCGACTTACTCGAGCAGA+TGG | 0.522727 | 7.4:+5482646 | None:intergenic |
| AGGACACACCTGTCCAAACT+AGG | 0.523221 | 7.4:+5483477 | None:intergenic |
| TAGCCCCAAAGTACTGAAGT+TGG | 0.525039 | 7.4:+5482327 | None:intergenic |
| GATGGGTCCTGGTAAATAAG+AGG | 0.526245 | 7.4:+5482664 | None:intergenic |
| TTACTCGAGCAGATGGGTCC+TGG | 0.527068 | 7.4:+5482653 | None:intergenic |
| TATGGGAAACGTGGACGCCC+CGG | 0.529193 | 7.4:-5482490 | MS.gene28843:CDS |
| TCAAATATAGTCTCATCGAC+CGG | 0.529909 | 7.4:+5482471 | None:intergenic |
| ACTGAGCAAAGTCCTCGGTC+TGG | 0.531263 | 7.4:-5481547 | MS.gene28843:CDS |
| GTCCAATTGTCATAGGCGCC+GGG | 0.533568 | 7.4:+5483389 | None:intergenic |
| ACATATTGAAGTTGATGCCA+AGG | 0.539736 | 7.4:+5484642 | None:intergenic |
| CAAATATAGTCTCATCGACC+GGG | 0.540975 | 7.4:+5482472 | None:intergenic |
| GCTAGACTCTTTGTATGCAT+CGG | 0.543376 | 7.4:+5482920 | None:intergenic |
| ATTCGAGCAGCTACGAGTAT+GGG | 0.543742 | 7.4:-5482507 | MS.gene28843:CDS |
| GCCACTCCTAAAATCAGTAA+AGG | 0.544686 | 7.4:+5484589 | None:intergenic |
| TGTTCACCAAATGAAATGAC+AGG | 0.550764 | 7.4:+5484833 | None:intergenic |
| AAATCATAATGATAAGAAGA+TGG | 0.551493 | 7.4:+5483113 | None:intergenic |
| TCATTCTTGATACCTTCAAA+AGG | 0.552421 | 7.4:+5485116 | None:intergenic |
| TCTAACAGCTGTTCAAACCT+TGG | 0.553634 | 7.4:-5484659 | MS.gene28843:CDS |
| GTCCAAACTAGGACCATAAG+TGG | 0.562627 | 7.4:+5483488 | None:intergenic |
| GGTATCAAGAATGATCTAAG+AGG | 0.570702 | 7.4:-5485107 | MS.gene28843:CDS |
| AGGTGCACACCTTCAAGACT+TGG | 0.572324 | 7.4:-5481916 | MS.gene28843:CDS |
| CATACTCGTAGCTGCTCGAA+TGG | 0.572351 | 7.4:+5482509 | None:intergenic |
| GAAATGAGATTGTCAGGTAG+GGG | 0.575756 | 7.4:-5481493 | MS.gene28843:CDS |
| TAAGGAGAAGGCCAAATGAA+AGG | 0.576331 | 7.4:+5483700 | None:intergenic |
| CAATATATCTTACCGATGCA+AGG | 0.577470 | 7.4:+5481853 | None:intergenic |
| CAACCGCTTTACCCGAATTG+CGG | 0.578492 | 7.4:-5484021 | MS.gene28843:CDS |
| GATGGAACATGCTCCTAAGA+TGG | 0.580149 | 7.4:+5484046 | None:intergenic |
| ACTAAGAGCATGATCATCAA+AGG | 0.581858 | 7.4:+5481975 | None:intergenic |
| TGTTTCTTGGATGGGCTGGA+TGG | 0.584884 | 7.4:-5484495 | MS.gene28843:intron |
| AAAGCAGAAAGGCTAGATCA+TGG | 0.585011 | 7.4:-5483668 | MS.gene28843:CDS |
| TTGGCATCAACTTCAATATG+TGG | 0.585839 | 7.4:-5484640 | MS.gene28843:CDS |
| TGCTGGAAGACATTATTGTG+TGG | 0.586710 | 7.4:-5482986 | MS.gene28843:intron |
| CATAAGTGGCACACCATAGT+CGG | 0.587251 | 7.4:+5483502 | None:intergenic |
| GCAGACACCTCTTATTTACC+AGG | 0.589449 | 7.4:-5482671 | MS.gene28843:CDS |
| ACCACGGATTTGGACTAAAG+AGG | 0.593964 | 7.4:+5483414 | None:intergenic |
| TGTTTGGAATCAGGGTTGAG+AGG | 0.594019 | 7.4:+5481463 | None:intergenic |
| TTTACCGTTCAACCTTGCAT+CGG | 0.594284 | 7.4:-5481865 | MS.gene28843:intron |
| AACAGGTTTCTACCCAACTC+AGG | 0.597836 | 7.4:+5484514 | None:intergenic |
| TCATAGGCGCCGGGCGACCA+CGG | 0.600175 | 7.4:+5483398 | None:intergenic |
| CTCCCGCAATTCGGGTAAAG+CGG | 0.606782 | 7.4:+5484018 | None:intergenic |
| CTTACCGATGCAAGGTTGAA+CGG | 0.608240 | 7.4:+5481861 | None:intergenic |
| TCGCGACTGAGCAAAGTCCT+CGG | 0.608512 | 7.4:-5481552 | MS.gene28843:CDS |
| GGTGCTTCTCATATCGGAGA+AGG | 0.609058 | 7.4:-5481727 | MS.gene28843:CDS |
| ATACCAACTTCAGTACTTTG+GGG | 0.618229 | 7.4:-5482330 | MS.gene28843:CDS |
| CCGTTTGGAACACTTGCAGT+CGG | 0.622641 | 7.4:+5483449 | None:intergenic |
| TCAAGAATGATCTAAGAGGA+AGG | 0.623945 | 7.4:-5485103 | MS.gene28843:intron |
| CCGACTGCAAGTGTTCCAAA+CGG | 0.624889 | 7.4:-5483449 | MS.gene28843:CDS |
| GTGTTCCAAACGGTATCCCA+AGG | 0.628714 | 7.4:-5483439 | MS.gene28843:CDS |
| AATGTGTACATGATCACAGT+AGG | 0.629188 | 7.4:+5484562 | None:intergenic |
| CTTACTGATACTGTTTCGAG+CGG | 0.639834 | 7.4:+5482747 | None:intergenic |
| GAAGTTATCACAAGAAGCCG+TGG | 0.642922 | 7.4:-5481691 | MS.gene28843:CDS |
| ATTATACACTCAATCATTGG+TGG | 0.645714 | 7.4:-5484616 | MS.gene28843:CDS |
| CGAGAATTAAAAGAGAGGTG+CGG | 0.646333 | 7.4:+5481586 | None:intergenic |
| GTGACAAATGATTAGGCACA+AGG | 0.648110 | 7.4:-5482555 | MS.gene28843:intron |
| ATCGACTTACTCGAGCAGAT+GGG | 0.649721 | 7.4:+5482647 | None:intergenic |
| CTGTTTCAACAAAAGTAGCA+TGG | 0.650562 | 7.4:+5482096 | None:intergenic |
| GCCTCTTTAGTCCAAATCCG+TGG | 0.651698 | 7.4:-5483415 | MS.gene28843:CDS |
| AACACTTGCAGTCGGCATGT+AGG | 0.670569 | 7.4:+5483457 | None:intergenic |
| TTTGTATGCATCGGAGACTG+CGG | 0.679679 | 7.4:+5482929 | None:intergenic |
| AAATATAGTCTCATCGACCG+GGG | 0.685107 | 7.4:+5482473 | None:intergenic |
| GGTATGACTCCGTTTGCAGG+AGG | 0.685848 | 7.4:+5482950 | None:intergenic |
| GTGCCTCTTACGCCAGACCG+AGG | 0.694511 | 7.4:+5481535 | None:intergenic |
| TAGTATGCCTAAATTCACCA+CGG | 0.697327 | 7.4:+5481674 | None:intergenic |
| CCACACGAGAATTAAAAGAG+AGG | 0.699754 | 7.4:+5481581 | None:intergenic |
| AGCTACGAGTATGGGAAACG+TGG | 0.712689 | 7.4:-5482499 | MS.gene28843:CDS |
| TTATTACTTTGACCACAGTG+TGG | 0.712922 | 7.4:-5483177 | MS.gene28843:CDS |
| CCATTAGCAAACCTCCACGA+AGG | 0.724265 | 7.4:+5483738 | None:intergenic |
| AAAGCTGAGATGCCACACTG+TGG | 0.814882 | 7.4:+5483165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATATAAATAGATAAA+TGG | + | chr7.4:5484550-5484569 | None:intergenic | 10.0% |
| !! | AACATTATTTATTAAAAAGA+TGG | - | chr7.4:5483257-5483276 | MS.gene28843:intron | 10.0% |
| !!! | ATTTATCTATTTATATGTTT+TGG | - | chr7.4:5484549-5484568 | MS.gene28843:CDS | 10.0% |
| !!! | TAACTATAAGTATATTATTT+TGG | - | chr7.4:5481812-5481831 | MS.gene28843:intron | 10.0% |
| !! | ATATAAATAGATAAATGGTT+TGG | + | chr7.4:5484545-5484564 | None:intergenic | 15.0% |
| !! | TATGAAAGTTATATTTCAAT+TGG | + | chr7.4:5481663-5481682 | None:intergenic | 15.0% |
| !! | TTTAATAAATAATGTTACAG+TGG | + | chr7.4:5483253-5483272 | None:intergenic | 15.0% |
| !!! | AAATTTTCTTTTAATGTGTA+GGG | - | chr7.4:5484449-5484468 | MS.gene28843:intron | 15.0% |
| !!! | AATAAATTTTAAGAAGGTTT+AGG | + | chr7.4:5483960-5483979 | None:intergenic | 15.0% |
| !!! | ATTATTAACTTGATTTTGTA+GGG | - | chr7.4:5482476-5482495 | MS.gene28843:CDS | 15.0% |
| !!! | ATTTATTTAACTTTAACTAC+AGG | - | chr7.4:5483036-5483055 | MS.gene28843:intron | 15.0% |
| !!! | CAAGAAAATAAATTTTAAGA+AGG | + | chr7.4:5483966-5483985 | None:intergenic | 15.0% |
| !! | AAATCATAATGATAAGAAGA+TGG | + | chr7.4:5483471-5483490 | None:intergenic | 20.0% |
| !! | AATAATGCTATTGTCTTAAA+AGG | + | chr7.4:5484513-5484532 | None:intergenic | 20.0% |
| !! | ATTTATCTATCTATCAATGA+AGG | - | chr7.4:5482692-5482711 | MS.gene28843:CDS | 20.0% |
| !! | CTAAGAGTTATAAATTAATC+AGG | + | chr7.4:5483742-5483761 | None:intergenic | 20.0% |
| !! | TCAAGTTAATAATGAAAACA+AGG | + | chr7.4:5482469-5482488 | None:intergenic | 20.0% |
| !! | TGTAACTAAAAAATGAACAA+TGG | - | chr7.4:5483775-5483794 | MS.gene28843:CDS | 20.0% |
| !! | TTTGGATAAACAACTTAATT+AGG | - | chr7.4:5482178-5482197 | MS.gene28843:intron | 20.0% |
| !!! | AATATGTTGGTAAATAACTT+CGG | + | chr7.4:5482747-5482766 | None:intergenic | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | + | chr7.4:5482178-5482197 | None:intergenic | 20.0% |
| !!! | ACTTAATTAGGTTTTGTTAT+TGG | - | chr7.4:5482190-5482209 | MS.gene28843:intron | 20.0% |
| !!! | ATATGTTTTCATAAAGGAAA+AGG | - | chr7.4:5481836-5481855 | MS.gene28843:intron | 20.0% |
| !!! | CAAATTTTCTTTTAATGTGT+AGG | - | chr7.4:5484448-5484467 | MS.gene28843:intron | 20.0% |
| !!! | CATTATTAACTTGATTTTGT+AGG | - | chr7.4:5482475-5482494 | MS.gene28843:CDS | 20.0% |
| !!! | TTGCTTAATTCTTTTTCTAA+TGG | - | chr7.4:5483556-5483575 | MS.gene28843:intron | 20.0% |
| !!! | TTTGGAATATGTTTTCATAA+AGG | - | chr7.4:5481830-5481849 | MS.gene28843:intron | 20.0% |
| !!! | TTTTTTTTTTCTTTCTGAAC+AGG | - | chr7.4:5483314-5483333 | MS.gene28843:intron | 20.0% |
| ! | AAAAAATATGTATGTTGTGG+GGG | + | chr7.4:5481716-5481735 | None:intergenic | 25.0% |
| ! | AGAAAAAGAATTAAGCAAGT+TGG | + | chr7.4:5483554-5483573 | None:intergenic | 25.0% |
| ! | AGCAAAAAATATGTATGTTG+TGG | + | chr7.4:5481719-5481738 | None:intergenic | 25.0% |
| ! | CAAAAAATATGTATGTTGTG+GGG | + | chr7.4:5481717-5481736 | None:intergenic | 25.0% |
| ! | GCAAAAAATATGTATGTTGT+GGG | + | chr7.4:5481718-5481737 | None:intergenic | 25.0% |
| ! | TAAACTTTCAATTGCCATAA+AGG | + | chr7.4:5484285-5484304 | None:intergenic | 25.0% |
| ! | TAATAATGAAAACAAGGCAA+TGG | + | chr7.4:5482463-5482482 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr7.4:5482319-5482338 | MS.gene28843:CDS | 25.0% |
| !! | ACTTCTTTTATAAGCTATCA+TGG | - | chr7.4:5482284-5482303 | MS.gene28843:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+GGG | + | chr7.4:5482177-5482196 | None:intergenic | 25.0% |
| !! | ATTTAACTTTAACTACAGGT+TGG | - | chr7.4:5483040-5483059 | MS.gene28843:intron | 25.0% |
| !!! | AATGTTTTGATTCACTTTAC+AGG | - | chr7.4:5481683-5481702 | MS.gene28843:CDS | 25.0% |
| !!! | TATATGTTTTGGACTAACTT+GGG | - | chr7.4:5484560-5484579 | MS.gene28843:CDS | 25.0% |
| !!! | TTATATGTTTTGGACTAACT+TGG | - | chr7.4:5484559-5484578 | MS.gene28843:CDS | 25.0% |
| AAATACCAACTTCAGTACTT+TGG | - | chr7.4:5484249-5484268 | MS.gene28843:intron | 30.0% | |
| AAGCTATCATGGATAACTTA+TGG | - | chr7.4:5482295-5482314 | MS.gene28843:CDS | 30.0% | |
| AATACCAACTTCAGTACTTT+GGG | - | chr7.4:5484250-5484269 | MS.gene28843:intron | 30.0% | |
| AATCTCATTTCTTTGGTCAT+TGG | + | chr7.4:5485079-5485098 | None:intergenic | 30.0% | |
| AGTTGGAAGTTTAATGAACT+AGG | + | chr7.4:5483537-5483556 | None:intergenic | 30.0% | |
| ATTATACACTCAATCATTGG+TGG | - | chr7.4:5481965-5481984 | MS.gene28843:CDS | 30.0% | |
| ATTTACTTGTATCTTCTGCT+CGG | + | chr7.4:5484353-5484372 | None:intergenic | 30.0% | |
| CAAATGATTACAAACAGTGA+CGG | + | chr7.4:5483000-5483019 | None:intergenic | 30.0% | |
| GTATAATTCATGTTTCTTGC+TGG | - | chr7.4:5483578-5483597 | MS.gene28843:intron | 30.0% | |
| GTTTAATATATGCCATGTGT+TGG | - | chr7.4:5483999-5484018 | MS.gene28843:CDS | 30.0% | |
| TACTGCATTAAAAAGCAGAA+AGG | - | chr7.4:5482902-5482921 | MS.gene28843:intron | 30.0% | |
| TCATTCTTGATACCTTCAAA+AGG | + | chr7.4:5481468-5481487 | None:intergenic | 30.0% | |
| TGCTTTGATACTATTCTTAC+TGG | - | chr7.4:5482512-5482531 | MS.gene28843:CDS | 30.0% | |
| TGGTATTGTGACAAATGATT+AGG | - | chr7.4:5484019-5484038 | MS.gene28843:CDS | 30.0% | |
| TTATCTACTGATATAAGCAC+TGG | + | chr7.4:5482374-5482393 | None:intergenic | 30.0% | |
| ! | ATCAGTAAGAATGCTAGTTT+AGG | - | chr7.4:5483848-5483867 | MS.gene28843:intron | 30.0% |
| ! | GAAACATTTGTACCTTTTGA+AGG | - | chr7.4:5481453-5481472 | MS.gene28843:CDS | 30.0% |
| ! | GTTGGTATTTTCTTGAGAAT+AGG | + | chr7.4:5484239-5484258 | None:intergenic | 30.0% |
| ! | TATTTTCTTGAGAATAGGCA+TGG | + | chr7.4:5484234-5484253 | None:intergenic | 30.0% |
| ! | TGATTCACTTTACAGGATTT+TGG | - | chr7.4:5481690-5481709 | MS.gene28843:CDS | 30.0% |
| ! | TGTGCACCTTTGAAAAATTT+GGG | + | chr7.4:5484654-5484673 | None:intergenic | 30.0% |
| ! | TTTTCTTTCTGAACAGGATA+TGG | - | chr7.4:5483320-5483339 | MS.gene28843:intron | 30.0% |
| ! | TTTTTAATGCAGTAAGGAGA+AGG | + | chr7.4:5482896-5482915 | None:intergenic | 30.0% |
| !! | TAACTTGCTTCAATCAGTAT+TGG | - | chr7.4:5484190-5484209 | MS.gene28843:intron | 30.0% |
| !! | TTATTTCTTGTCTTGGTGTT+TGG | + | chr7.4:5485137-5485156 | None:intergenic | 30.0% |
| !! | TTTCTCCCCAAATTTTTCAA+AGG | - | chr7.4:5484645-5484664 | MS.gene28843:CDS | 30.0% |
| !!! | AAATCAGGACATGTTTTGAT+TGG | + | chr7.4:5482408-5482427 | None:intergenic | 30.0% |
| !!! | CATTATGATTTGCTCCTTTT+GGG | - | chr7.4:5483480-5483499 | MS.gene28843:CDS | 30.0% |
| !!! | TCATTATGATTTGCTCCTTT+TGG | - | chr7.4:5483479-5483498 | MS.gene28843:CDS | 30.0% |
| !!! | TTCTGCTTTTTAATGCAGTA+AGG | + | chr7.4:5482902-5482921 | None:intergenic | 30.0% |
| AAACGGGACCTAAATGTATA+GGG | + | chr7.4:5482161-5482180 | None:intergenic | 35.0% | |
| AACAACAGTCCAATTGTCAT+AGG | + | chr7.4:5483202-5483221 | None:intergenic | 35.0% | |
| AAGAAATGAGATTGTCAGGT+AGG | - | chr7.4:5485086-5485105 | MS.gene28843:intron | 35.0% | |
| AATGTGTACATGATCACAGT+AGG | + | chr7.4:5482022-5482041 | None:intergenic | 35.0% | |
| ACAGCACTAGAACATAAATC+AGG | + | chr7.4:5482423-5482442 | None:intergenic | 35.0% | |
| ACCAAAGAAATGAGATTGTC+AGG | - | chr7.4:5485082-5485101 | MS.gene28843:intron | 35.0% | |
| ACCTGACAATCTCATTTCTT+TGG | + | chr7.4:5485086-5485105 | None:intergenic | 35.0% | |
| AGAAATGAGATTGTCAGGTA+GGG | - | chr7.4:5485087-5485106 | MS.gene28843:intron | 35.0% | |
| ATACCAACTTCAGTACTTTG+GGG | - | chr7.4:5484251-5484270 | MS.gene28843:intron | 35.0% | |
| ATGGCAATTGAAAGTTTACC+TGG | - | chr7.4:5484287-5484306 | MS.gene28843:intron | 35.0% | |
| CAATATATCTTACCGATGCA+AGG | + | chr7.4:5484731-5484750 | None:intergenic | 35.0% | |
| CGTCACTGTTTGTAATCATT+TGG | - | chr7.4:5482998-5483017 | MS.gene28843:intron | 35.0% | |
| CTGTTTCAACAAAAGTAGCA+TGG | + | chr7.4:5484488-5484507 | None:intergenic | 35.0% | |
| GAACAACTAGAGAGAAATAC+TGG | - | chr7.4:5481766-5481785 | MS.gene28843:intron | 35.0% | |
| GATTAACAGCAATCTGAGTT+TGG | - | chr7.4:5484827-5484846 | MS.gene28843:CDS | 35.0% | |
| GATTTCGTATCTTCTCTCTT+TGG | + | chr7.4:5482810-5482829 | None:intergenic | 35.0% | |
| GGCATTATACACTCAATCAT+TGG | - | chr7.4:5481962-5481981 | MS.gene28843:CDS | 35.0% | |
| GGTATCAAGAATGATCTAAG+AGG | - | chr7.4:5481474-5481493 | MS.gene28843:CDS | 35.0% | |
| GTCATACCAAAAATCCCAAA+AGG | + | chr7.4:5483497-5483516 | None:intergenic | 35.0% | |
| GTTCCTGTTGTGTTCATAAT+TGG | - | chr7.4:5483348-5483367 | MS.gene28843:intron | 35.0% | |
| TAATGTGCTACAAGCAAGAT+TGG | - | chr7.4:5481502-5481521 | MS.gene28843:CDS | 35.0% | |
| TAGTATGCCTAAATTCACCA+CGG | + | chr7.4:5484910-5484929 | None:intergenic | 35.0% | |
| TCAAATATAGTCTCATCGAC+CGG | + | chr7.4:5484113-5484132 | None:intergenic | 35.0% | |
| TCAAGAATGATCTAAGAGGA+AGG | - | chr7.4:5481478-5481497 | MS.gene28843:CDS | 35.0% | |
| TCTAGCAACTCTTAAACATC+AGG | - | chr7.4:5483678-5483697 | MS.gene28843:CDS | 35.0% | |
| TGACAATTGGACTGTTGTTA+AGG | - | chr7.4:5483203-5483222 | MS.gene28843:CDS | 35.0% | |
| TGTTCACCAAATGAAATGAC+AGG | + | chr7.4:5481751-5481770 | None:intergenic | 35.0% | |
| TTATTACTTTGACCACAGTG+TGG | - | chr7.4:5483404-5483423 | MS.gene28843:CDS | 35.0% | |
| TTGGCATCAACTTCAATATG+TGG | - | chr7.4:5481941-5481960 | MS.gene28843:CDS | 35.0% | |
| TTTGTCACAATACCAACACA+TGG | + | chr7.4:5484014-5484033 | None:intergenic | 35.0% | |
| ! | ACTAAGAGCATGATCATCAA+AGG | + | chr7.4:5484609-5484628 | None:intergenic | 35.0% |
| ! | CAATTGAGTTTTTACCTTCG+TGG | - | chr7.4:5482829-5482848 | MS.gene28843:intron | 35.0% |
| ! | GATTTTGTAGGGTATGTGTA+TGG | - | chr7.4:5482487-5482506 | MS.gene28843:CDS | 35.0% |
| ! | GCAATACCTGTCATTTCATT+TGG | - | chr7.4:5481742-5481761 | MS.gene28843:intron | 35.0% |
| ! | GCTAGTTTAGGACAGTTATA+CGG | - | chr7.4:5483860-5483879 | MS.gene28843:intron | 35.0% |
| ! | GTGCACCTTTGAAAAATTTG+GGG | + | chr7.4:5484653-5484672 | None:intergenic | 35.0% |
| ! | GTGTGCACCTTTGAAAAATT+TGG | + | chr7.4:5484655-5484674 | None:intergenic | 35.0% |
| ! | GTTTTACTTCTCCATGTTTC+CGG | - | chr7.4:5482134-5482153 | MS.gene28843:intron | 35.0% |
| ! | TAGAAACCTGTTTCTTGGAT+GGG | - | chr7.4:5482078-5482097 | MS.gene28843:CDS | 35.0% |
| ! | TTAGGATCATTTCTTGGTGT+TGG | + | chr7.4:5484962-5484981 | None:intergenic | 35.0% |
| ! | TTTACCTGGAAACCAGTTTT+GGG | - | chr7.4:5484301-5484320 | MS.gene28843:intron | 35.0% |
| !! | ACATATTGAAGTTGATGCCA+AGG | + | chr7.4:5481942-5481961 | None:intergenic | 35.0% |
| !! | ACATTATTGTGTGGCCTTAT+TGG | - | chr7.4:5483604-5483623 | MS.gene28843:intron | 35.0% |
| !! | CTCTCTTTTAATTCTCGTGT+GGG | - | chr7.4:5485001-5485020 | MS.gene28843:intron | 35.0% |
| !! | GTTGATTTGATACTTGCAGA+GGG | - | chr7.4:5481896-5481915 | MS.gene28843:CDS | 35.0% |
| !! | TGTTGATTTGATACTTGCAG+AGG | - | chr7.4:5481895-5481914 | MS.gene28843:CDS | 35.0% |
| !! | TTGCTTCAATCAGTATTGGT+TGG | - | chr7.4:5484194-5484213 | MS.gene28843:intron | 35.0% |
| !!! | ACCTTTACTGATTTTAGGAG+TGG | - | chr7.4:5481991-5482010 | MS.gene28843:CDS | 35.0% |
| !!! | GGTCAACCTTTACTGATTTT+AGG | - | chr7.4:5481986-5482005 | MS.gene28843:CDS | 35.0% |
| !!! | TTTGCTCCTTTTGGGATTTT+TGG | - | chr7.4:5483488-5483507 | MS.gene28843:CDS | 35.0% |
| AAAGCAGAAAGGCTAGATCA+TGG | - | chr7.4:5482913-5482932 | MS.gene28843:CDS | 40.0% | |
| AAAGGATCCTTTCCCAAAAC+TGG | + | chr7.4:5484316-5484335 | None:intergenic | 40.0% | |
| AAATATAGTCTCATCGACCG+GGG | + | chr7.4:5484111-5484130 | None:intergenic | 40.0% | |
| AACGGGACCTAAATGTATAG+GGG | + | chr7.4:5482160-5482179 | None:intergenic | 40.0% | |
| ATATTGTTGTCCTTGTGCCA+GGG | - | chr7.4:5482762-5482781 | MS.gene28843:CDS | 40.0% | |
| ATTGGAATTCCTCCTGCAAA+CGG | - | chr7.4:5483622-5483641 | MS.gene28843:intron | 40.0% | |
| CAAACGGGACCTAAATGTAT+AGG | + | chr7.4:5482162-5482181 | None:intergenic | 40.0% | |
| CAAATATAGTCTCATCGACC+GGG | + | chr7.4:5484112-5484131 | None:intergenic | 40.0% | |
| CCACACGAGAATTAAAAGAG+AGG | + | chr7.4:5485003-5485022 | None:intergenic | 40.0% | |
| CGAGAATTAAAAGAGAGGTG+CGG | + | chr7.4:5484998-5485017 | None:intergenic | 40.0% | |
| CTATACATTTAGGTCCCGTT+TGG | - | chr7.4:5482160-5482179 | MS.gene28843:intron | 40.0% | |
| CTATTCTTACTGGCCATCTT+AGG | - | chr7.4:5482522-5482541 | MS.gene28843:CDS | 40.0% | |
| CTTACTGATACTGTTTCGAG+CGG | + | chr7.4:5483837-5483856 | None:intergenic | 40.0% | |
| GAAATGAGATTGTCAGGTAG+GGG | - | chr7.4:5485088-5485107 | MS.gene28843:intron | 40.0% | |
| GCACAAGGACAACAATATGT+TGG | + | chr7.4:5482760-5482779 | None:intergenic | 40.0% | |
| GCCACTCCTAAAATCAGTAA+AGG | + | chr7.4:5481995-5482014 | None:intergenic | 40.0% | |
| GCTAAAGAAAGACCTGAGTT+GGG | - | chr7.4:5482055-5482074 | MS.gene28843:CDS | 40.0% | |
| GCTAGACTCTTTGTATGCAT+CGG | + | chr7.4:5483664-5483683 | None:intergenic | 40.0% | |
| GCTCCAATTATGAACACAAC+AGG | + | chr7.4:5483354-5483373 | None:intergenic | 40.0% | |
| GTGACAAATGATTAGGCACA+AGG | - | chr7.4:5484026-5484045 | MS.gene28843:CDS | 40.0% | |
| TAAGGAGAAGGCCAAATGAA+AGG | + | chr7.4:5482884-5482903 | None:intergenic | 40.0% | |
| TCTAACAGCTGTTCAAACCT+TGG | - | chr7.4:5481922-5481941 | MS.gene28843:CDS | 40.0% | |
| TGCTAAAGAAAGACCTGAGT+TGG | - | chr7.4:5482054-5482073 | MS.gene28843:CDS | 40.0% | |
| TGCTGGAAGACATTATTGTG+TGG | - | chr7.4:5483595-5483614 | MS.gene28843:intron | 40.0% | |
| TTCGCTTTGGTCCTTTCATT+TGG | - | chr7.4:5482870-5482889 | MS.gene28843:intron | 40.0% | |
| TTCTTTGGTCATTGGACTGT+TGG | + | chr7.4:5485071-5485090 | None:intergenic | 40.0% | |
| TTGCAGGAGGAATTCCAATA+AGG | + | chr7.4:5483621-5483640 | None:intergenic | 40.0% | |
| TTTACCGTTCAACCTTGCAT+CGG | - | chr7.4:5484716-5484735 | MS.gene28843:intron | 40.0% | |
| TTTCATGTTGCAGAGACAGT+CGG | + | chr7.4:5482968-5482987 | None:intergenic | 40.0% | |
| ! | GAGAATTAAAAGAGAGGTGC+GGG | + | chr7.4:5484997-5485016 | None:intergenic | 40.0% |
| ! | GTAGAAACCTGTTTCTTGGA+TGG | - | chr7.4:5482077-5482096 | MS.gene28843:CDS | 40.0% |
| ! | GTTTACCTGGAAACCAGTTT+TGG | - | chr7.4:5484300-5484319 | MS.gene28843:intron | 40.0% |
| ! | TTGAGTTTTTACCTTCGTGG+AGG | - | chr7.4:5482832-5482851 | MS.gene28843:intron | 40.0% |
| ! | TTGGGTAGAAACCTGTTTCT+TGG | - | chr7.4:5482073-5482092 | MS.gene28843:CDS | 40.0% |
| !! | ATCATTTCTTGGTGTTGGAG+TGG | + | chr7.4:5484957-5484976 | None:intergenic | 40.0% |
| !! | CCTCTCTTTTAATTCTCGTG+TGG | - | chr7.4:5485000-5485019 | MS.gene28843:intron | 40.0% |
| !! | CTTCAATCAGTATTGGTTGG+AGG | - | chr7.4:5484197-5484216 | MS.gene28843:intron | 40.0% |
| !! | GGGAGAAAGTATTGTCTTAG+TGG | + | chr7.4:5484633-5484652 | None:intergenic | 40.0% |
| !! | TAAGAGGTGTCTGCATTTGA+TGG | + | chr7.4:5483904-5483923 | None:intergenic | 40.0% |
| !! | TCGGTGCTGTGAAAAGTAAA+AGG | + | chr7.4:5484334-5484353 | None:intergenic | 40.0% |
| !! | TGTCTTGGTGTTTGGAATCA+GGG | + | chr7.4:5485129-5485148 | None:intergenic | 40.0% |
| !! | TTGTCTTGGTGTTTGGAATC+AGG | + | chr7.4:5485130-5485149 | None:intergenic | 40.0% |
| !!! | CGGCTTTTAGGATCATTTCT+TGG | + | chr7.4:5484968-5484987 | None:intergenic | 40.0% |
| AAACAACTCTCCCGCAATTC+GGG | + | chr7.4:5482574-5482593 | None:intergenic | 45.0% | |
| AACAGGTTTCTACCCAACTC+AGG | + | chr7.4:5482070-5482089 | None:intergenic | 45.0% | |
| AAGGCTAGATCATGGCGTTA+TGG | - | chr7.4:5482921-5482940 | MS.gene28843:CDS | 45.0% | |
| ACCACGGATTTGGACTAAAG+AGG | + | chr7.4:5483170-5483189 | None:intergenic | 45.0% | |
| AGATCATGGCGTTATGGTAG+TGG | - | chr7.4:5482927-5482946 | MS.gene28843:CDS | 45.0% | |
| AGCACTGCAATCATAGTTGC+TGG | + | chr7.4:5483384-5483403 | None:intergenic | 45.0% | |
| ATTCGAGCAGCTACGAGTAT+GGG | - | chr7.4:5484074-5484093 | MS.gene28843:CDS | 45.0% | |
| CAAACAACTCTCCCGCAATT+CGG | + | chr7.4:5482575-5482594 | None:intergenic | 45.0% | |
| CAAGAAGCCGTGGTGAATTT+AGG | - | chr7.4:5484900-5484919 | MS.gene28843:intron | 45.0% | |
| CATAAGTGGCACACCATAGT+CGG | + | chr7.4:5483082-5483101 | None:intergenic | 45.0% | |
| CATATTGTTGTCCTTGTGCC+AGG | - | chr7.4:5482761-5482780 | MS.gene28843:CDS | 45.0% | |
| CGTTGTTCCTTTACCTCAAC+AGG | + | chr7.4:5484164-5484183 | None:intergenic | 45.0% | |
| CTAACTTGGGTACCTATTGC+TGG | - | chr7.4:5484573-5484592 | MS.gene28843:CDS | 45.0% | |
| CTTACCGATGCAAGGTTGAA+CGG | + | chr7.4:5484723-5484742 | None:intergenic | 45.0% | |
| CTTATGGTCCTAGTTTGGAC+AGG | - | chr7.4:5483096-5483115 | MS.gene28843:CDS | 45.0% | |
| CTTGCTTCCTGTTGAGGTAA+AGG | - | chr7.4:5484154-5484173 | MS.gene28843:intron | 45.0% | |
| GAAGTTATCACAAGAAGCCG+TGG | - | chr7.4:5484890-5484909 | MS.gene28843:intron | 45.0% | |
| GATGGAACATGCTCCTAAGA+TGG | + | chr7.4:5482538-5482557 | None:intergenic | 45.0% | |
| GATGGGTCCTGGTAAATAAG+AGG | + | chr7.4:5483920-5483939 | None:intergenic | 45.0% | |
| GGAAACATGACTCCAGCAAT+AGG | + | chr7.4:5484588-5484607 | None:intergenic | 45.0% | |
| GGAGTGGAGCTATTGATCTT+TGG | + | chr7.4:5484941-5484960 | None:intergenic | 45.0% | |
| GTCCAAACTAGGACCATAAG+TGG | + | chr7.4:5483096-5483115 | None:intergenic | 45.0% | |
| GTGGAATCAAAGCAGGTGTA+AGG | - | chr7.4:5481529-5481548 | MS.gene28843:CDS | 45.0% | |
| TACAAGCAAGATTGGACAGG+TGG | - | chr7.4:5481510-5481529 | MS.gene28843:CDS | 45.0% | |
| TGCTAATGGGATGTTCGCTT+TGG | - | chr7.4:5482857-5482876 | MS.gene28843:intron | 45.0% | |
| TGCTACAAGCAAGATTGGAC+AGG | - | chr7.4:5481507-5481526 | MS.gene28843:CDS | 45.0% | |
| TTTCCGGCCCCTATACATTT+AGG | - | chr7.4:5482150-5482169 | MS.gene28843:intron | 45.0% | |
| TTTGTATGCATCGGAGACTG+CGG | + | chr7.4:5483655-5483674 | None:intergenic | 45.0% | |
| ! | ATCGACTTACTCGAGCAGAT+GGG | + | chr7.4:5483937-5483956 | None:intergenic | 45.0% |
| ! | CTTTCCCAAAACTGGTTTCC+AGG | + | chr7.4:5484308-5484327 | None:intergenic | 45.0% |
| ! | GCAGACACCTCTTATTTACC+AGG | - | chr7.4:5483910-5483929 | MS.gene28843:intron | 45.0% |
| ! | TGCCACTTATGGTCCTAGTT+TGG | - | chr7.4:5483091-5483110 | MS.gene28843:intron | 45.0% |
| ! | TGTTTGGAATCAGGGTTGAG+AGG | + | chr7.4:5485121-5485140 | None:intergenic | 45.0% |
| ! | TTGGGGCTACTTTGCCTTTA+TGG | - | chr7.4:5484268-5484287 | MS.gene28843:intron | 45.0% |
| !! | AGATGACTTGCTTCCTGTTG+AGG | - | chr7.4:5484148-5484167 | MS.gene28843:intron | 45.0% |
| !! | CTTCGTGGAGGTTTGCTAAT+GGG | - | chr7.4:5482844-5482863 | MS.gene28843:intron | 45.0% |
| !! | TAGCCCCAAAGTACTGAAGT+TGG | + | chr7.4:5484257-5484276 | None:intergenic | 45.0% |
| !!! | CTGGAAACCAGTTTTGGGAA+AGG | - | chr7.4:5484306-5484325 | MS.gene28843:intron | 45.0% |
| !! | TAAACATTTATATATTAAAT+TGG | + | chr7.4:5484395-5484414 | None:intergenic | 5.0% |
| AAAGCTGAGATGCCACACTG+TGG | + | chr7.4:5483419-5483438 | None:intergenic | 50.0% | |
| AACACTTGCAGTCGGCATGT+AGG | + | chr7.4:5483127-5483146 | None:intergenic | 50.0% | |
| AACCGCTTTACCCGAATTGC+GGG | - | chr7.4:5482561-5482580 | MS.gene28843:intron | 50.0% | |
| AGCTACGAGTATGGGAAACG+TGG | - | chr7.4:5484082-5484101 | MS.gene28843:CDS | 50.0% | |
| AGGACACACCTGTCCAAACT+AGG | + | chr7.4:5483107-5483126 | None:intergenic | 50.0% | |
| AGGTGCACACCTTCAAGACT+TGG | - | chr7.4:5484665-5484684 | MS.gene28843:CDS | 50.0% | |
| AGTCCAATTGTCATAGGCGC+CGG | + | chr7.4:5483196-5483215 | None:intergenic | 50.0% | |
| ATCCAGCCCATCCAAGAAAC+AGG | + | chr7.4:5482087-5482106 | None:intergenic | 50.0% | |
| ATGTATAGGGGCCGGAAACA+TGG | + | chr7.4:5482148-5482167 | None:intergenic | 50.0% | |
| CAACCGCTTTACCCGAATTG+CGG | - | chr7.4:5482560-5482579 | MS.gene28843:intron | 50.0% | |
| CAGCTGCATCCAAGTCTTGA+AGG | + | chr7.4:5484677-5484696 | None:intergenic | 50.0% | |
| CATACTCGTAGCTGCTCGAA+TGG | + | chr7.4:5484075-5484094 | None:intergenic | 50.0% | |
| CATTCGAGCAGCTACGAGTA+TGG | - | chr7.4:5484073-5484092 | MS.gene28843:CDS | 50.0% | |
| CCATTAGCAAACCTCCACGA+AGG | + | chr7.4:5482846-5482865 | None:intergenic | 50.0% | |
| CCGACTGCAAGTGTTCCAAA+CGG | - | chr7.4:5483132-5483151 | MS.gene28843:CDS | 50.0% | |
| CGAATTGCGGGAGAGTTGTT+TGG | - | chr7.4:5482573-5482592 | MS.gene28843:intron | 50.0% | |
| CTAGTGCTGTCACTGTCATG+TGG | - | chr7.4:5482433-5482452 | MS.gene28843:CDS | 50.0% | |
| CTTGGATGCAGCTGAGTATG+AGG | - | chr7.4:5484683-5484702 | MS.gene28843:intron | 50.0% | |
| GAAACTCATCCACAAGTCCC+TGG | + | chr7.4:5482782-5482801 | None:intergenic | 50.0% | |
| GCACACCATAGTCGGCTATA+AGG | + | chr7.4:5483074-5483093 | None:intergenic | 50.0% | |
| GCCTCTTTAGTCCAAATCCG+TGG | - | chr7.4:5483166-5483185 | MS.gene28843:CDS | 50.0% | |
| GGACCTAAATGTATAGGGGC+CGG | + | chr7.4:5482156-5482175 | None:intergenic | 50.0% | |
| GGAGCTGGTGCTTCTCATAT+CGG | - | chr7.4:5484848-5484867 | MS.gene28843:CDS | 50.0% | |
| GGTGCTTCTCATATCGGAGA+AGG | - | chr7.4:5484854-5484873 | MS.gene28843:CDS | 50.0% | |
| GTGTTCCAAACGGTATCCCA+AGG | - | chr7.4:5483142-5483161 | MS.gene28843:CDS | 50.0% | |
| TGGACAGGTGGAATCAAAGC+AGG | - | chr7.4:5481522-5481541 | MS.gene28843:CDS | 50.0% | |
| ! | AACCTGTTTCTTGGATGGGC+TGG | - | chr7.4:5482082-5482101 | MS.gene28843:CDS | 50.0% |
| ! | CAGCAATCTGAGTTTGGAGC+TGG | - | chr7.4:5484833-5484852 | MS.gene28843:CDS | 50.0% |
| ! | CCGTTTGGAACACTTGCAGT+CGG | + | chr7.4:5483135-5483154 | None:intergenic | 50.0% |
| ! | GATCGACTTACTCGAGCAGA+TGG | + | chr7.4:5483938-5483957 | None:intergenic | 50.0% |
| !! | CCTTCGTGGAGGTTTGCTAA+TGG | - | chr7.4:5482843-5482862 | MS.gene28843:intron | 50.0% |
| !! | CGACTATGGTGTGCCACTTA+TGG | - | chr7.4:5483080-5483099 | MS.gene28843:intron | 50.0% |
| !! | CGTAGCCTTATAGCCGACTA+TGG | - | chr7.4:5483066-5483085 | MS.gene28843:intron | 50.0% |
| !! | TCGGGTAAAGCGGTTGATGA+TGG | + | chr7.4:5482556-5482575 | None:intergenic | 50.0% |
| !! | TGTTTCTTGGATGGGCTGGA+TGG | - | chr7.4:5482086-5482105 | MS.gene28843:CDS | 50.0% |
| !! | TTGGACTAAAGAGGCGCCTT+GGG | + | chr7.4:5483161-5483180 | None:intergenic | 50.0% |
| !! | TTTGGACTAAAGAGGCGCCT+TGG | + | chr7.4:5483162-5483181 | None:intergenic | 50.0% |
| ACTGAGCAAAGTCCTCGGTC+TGG | - | chr7.4:5485034-5485053 | MS.gene28843:intron | 55.0% | |
| ATCCACAAGTCCCTGGCACA+AGG | + | chr7.4:5482775-5482794 | None:intergenic | 55.0% | |
| CTCCCGCAATTCGGGTAAAG+CGG | + | chr7.4:5482566-5482585 | None:intergenic | 55.0% | |
| GGTATGACTCCGTTTGCAGG+AGG | + | chr7.4:5483634-5483653 | None:intergenic | 55.0% | |
| GTCCAATTGTCATAGGCGCC+GGG | + | chr7.4:5483195-5483214 | None:intergenic | 55.0% | |
| TCGCGACTGAGCAAAGTCCT+CGG | - | chr7.4:5485029-5485048 | MS.gene28843:intron | 55.0% | |
| TGCGGTATGACTCCGTTTGC+AGG | + | chr7.4:5483637-5483656 | None:intergenic | 55.0% | |
| TTACTCGAGCAGATGGGTCC+TGG | + | chr7.4:5483931-5483950 | None:intergenic | 55.0% | |
| AGGCGCCTTGGGATACCGTT+TGG | + | chr7.4:5483150-5483169 | None:intergenic | 60.0% | |
| AGTCCAAATCCGTGGTCGCC+CGG | - | chr7.4:5483174-5483193 | MS.gene28843:CDS | 60.0% | |
| AGTCCTCGGTCTGGCGTAAG+AGG | - | chr7.4:5485043-5485062 | MS.gene28843:intron | 60.0% | |
| GTCCTTGTGCCAGGGACTTG+TGG | - | chr7.4:5482770-5482789 | MS.gene28843:CDS | 60.0% | |
| TATGGGAAACGTGGACGCCC+CGG | - | chr7.4:5484091-5484110 | MS.gene28843:intron | 60.0% | |
| ! | AAGAGAGGTGCGGGCTCAGA+CGG | + | chr7.4:5484988-5485007 | None:intergenic | 60.0% |
| ! | TGCGGGCTCAGACGGCTTTT+AGG | + | chr7.4:5484980-5484999 | None:intergenic | 60.0% |
| CGCCCGGCGCCTATGACAAT+TGG | - | chr7.4:5483190-5483209 | MS.gene28843:CDS | 65.0% | |
| GTGCCTCTTACGCCAGACCG+AGG | + | chr7.4:5485049-5485068 | None:intergenic | 65.0% | |
| !! | TCATAGGCGCCGGGCGACCA+CGG | + | chr7.4:5483186-5483205 | None:intergenic | 70.0% |
| GCGCCGGGCGACCACGGATT+TGG | + | chr7.4:5483180-5483199 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5481447 | 5485156 | 5481447 | ID=MS.gene28843 |
| chr7.4 | mRNA | 5481447 | 5485156 | 5481447 | ID=MS.gene28843.t1;Parent=MS.gene28843 |
| chr7.4 | exon | 5485104 | 5485156 | 5485104 | ID=MS.gene28843.t1.exon1;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5485104 | 5485156 | 5485104 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5484816 | 5484898 | 5484816 | ID=MS.gene28843.t1.exon2;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5484816 | 5484898 | 5484816 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5484496 | 5484688 | 5484496 | ID=MS.gene28843.t1.exon3;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5484496 | 5484688 | 5484496 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5483968 | 5484106 | 5483968 | ID=MS.gene28843.t1.exon4;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5483968 | 5484106 | 5483968 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5483655 | 5483820 | 5483655 | ID=MS.gene28843.t1.exon5;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5483655 | 5483820 | 5483655 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5483379 | 5483545 | 5483379 | ID=MS.gene28843.t1.exon6;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5483379 | 5483545 | 5483379 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5483094 | 5483267 | 5483094 | ID=MS.gene28843.t1.exon7;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5483094 | 5483267 | 5483094 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5482904 | 5482999 | 5482904 | ID=MS.gene28843.t1.exon8;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5482904 | 5482999 | 5482904 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5482657 | 5482794 | 5482657 | ID=MS.gene28843.t1.exon9;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5482657 | 5482794 | 5482657 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5482237 | 5482562 | 5482237 | ID=MS.gene28843.t1.exon10;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5482237 | 5482562 | 5482237 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5481866 | 5482133 | 5481866 | ID=MS.gene28843.t1.exon11;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5481866 | 5482133 | 5481866 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| chr7.4 | exon | 5481447 | 5481758 | 5481447 | ID=MS.gene28843.t1.exon12;Parent=MS.gene28843.t1 |
| chr7.4 | CDS | 5481447 | 5481758 | 5481447 | ID=cds.MS.gene28843.t1;Parent=MS.gene28843.t1 |
| Gene Sequence |
| Protein sequence |
