AlfalfaGEDB | MS.gene22271

M. sativa cultivar XinJiangDaYe / MS.gene22271

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22271.t1	XP_024639082.1	90.3	672	32	1	1	639	53	724	0.00E+00	1237.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22271.t1	Q9C9I6	52.9	673	278	6	5	640	6	676	9.0e-200	698.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22271.t1	G7K7Y9	90.3	672	32	1	1	639	53	724	0.0e+00	1237.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene22271	0.836407	9.53E-57	-1.69E-46
MS.gene049159	MS.gene22271	0.832057	1.17E-55	-1.69E-46
MS.gene049254	MS.gene22271	0.840972	6.30E-58	-1.69E-46
MS.gene049272	MS.gene22271	0.804862	1.76E-49	-1.69E-46
MS.gene049343	MS.gene22271	0.815803	7.67E-52	-1.69E-46
MS.gene049404	MS.gene22271	0.811999	5.29E-51	-1.69E-46
MS.gene049435	MS.gene22271	0.836268	1.03E-56	-1.69E-46
MS.gene049501	MS.gene22271	0.802164	6.39E-49	-1.69E-46
MS.gene049585	MS.gene22271	0.808314	3.29E-50	-1.69E-46
MS.gene049669	MS.gene22271	0.807759	4.32E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003010	MS.gene22271	PPI
MS.gene00765	MS.gene22271	PPI
MS.gene032977	MS.gene22271	PPI
MS.gene042816	MS.gene22271	PPI
MS.gene044557	MS.gene22271	PPI
MS.gene047484	MS.gene22271	PPI
MS.gene049222	MS.gene22271	PPI
MS.gene059179	MS.gene22271	PPI
MS.gene06336	MS.gene22271	PPI
MS.gene067090	MS.gene22271	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22271.t1	MTR_5g008690	90.577	711	34	1	1	678	53	763	0.0	1336
MS.gene22271.t1	MTR_1g040635	37.265	585	352	8	72	642	78	661	8.59e-124	387
MS.gene22271.t1	MTR_1g040635	30.480	479	235	14	106	528	8	444	2.01e-52	194
MS.gene22271.t1	MTR_1g040635	28.497	193	134	2	54	242	307	499	4.34e-19	92.4
MS.gene22271.t1	MTR_4g011730	32.388	670	392	6	14	627	20	684	9.30e-116	365
MS.gene22271.t1	MTR_4g113830	34.155	568	367	5	76	641	99	661	1.86e-111	355
MS.gene22271.t1	MTR_4g113830	25.893	448	249	9	72	512	227	598	1.02e-36	148
MS.gene22271.t1	MTR_1g040585	36.782	522	315	6	143	652	42	560	2.29e-111	350
MS.gene22271.t1	MTR_1g040585	25.229	436	242	14	60	447	60	459	5.24e-23	104
MS.gene22271.t1	MTR_1g040585	29.032	186	128	2	54	235	199	384	1.56e-17	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22271.t1	AT1G71490	52.663	676	282	5	5	643	6	680	0.0	703
MS.gene22271.t1	AT1G22830	48.125	640	289	9	4	606	48	681	0.0	590
MS.gene22271.t1	AT1G22830	48.125	640	289	9	4	606	48	681	0.0	590
MS.gene22271.t1	AT1G08070	36.232	552	347	3	91	641	13	560	8.95e-127	392
MS.gene22271.t1	AT1G08070	29.153	295	173	2	72	364	126	386	5.11e-34	139
MS.gene22271.t1	AT1G08070	36.232	552	347	3	91	641	117	664	1.06e-125	392
MS.gene22271.t1	AT1G08070	29.153	295	173	2	72	364	230	490	1.12e-33	138
MS.gene22271.t1	AT1G08070	25.547	411	225	9	156	528	81	448	9.02e-31	129
MS.gene22271.t1	AT5G16860	35.893	599	370	6	57	642	177	774	4.97e-121	383
MS.gene22271.t1	AT5G16860	29.545	572	307	13	26	545	44	571	2.57e-58	213

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Find 190 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAGTGATTGGGGAA+TGG	0.515205	5.4:-3430585	MS.gene22271:CDS
AAACAATGACCTGAATGATC+AGG	0.495888	5.4:+3430535	None:intergenic
AAAGCAAAGGAGGTTATCAC+AGG	0.532659	5.4:-3430670	MS.gene22271:CDS
AAAGCGTGAAGAACAGTTCA+AGG	0.483033	5.4:-3431058	MS.gene22271:CDS
AAAGGACTCCTGGTTGTGCT+TGG	0.406887	5.4:-3430429	MS.gene22271:CDS
AAATACAGTGATTGGGGAAT+GGG	0.444323	5.4:-3430584	MS.gene22271:CDS
AAATCTCAAGTCTTTATCAC+AGG	0.515399	5.4:-3432117	MS.gene22271:CDS
AAATTGGGAAAGGAGATTCA+TGG	0.515772	5.4:-3431393	MS.gene22271:CDS
AAGCAAAGGAGGTTATCACA+GGG	0.738228	5.4:-3430669	MS.gene22271:CDS
AAGCAGGGTCATGGACAATT+TGG	0.354487	5.4:-3429261	MS.gene22271:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTCAAGTCTTTATCAC+AGG	-	chr5.4:3428286-3428305	MS.gene22271:intron	30.0%
AACAAAGAAACAGATACGAA+TGG	+	chr5.4:3431705-3431724	None:intergenic	30.0%
AACAACATTTGCTTATAGAG+TGG	+	chr5.4:3430571-3430590	None:intergenic	30.0%
AACTATCTTAGCAGTTAGTT+AGG	+	chr5.4:3431588-3431607	None:intergenic	30.0%
AAGTCTTTGATTCATTAAGC+AGG	-	chr5.4:3429437-3429456	MS.gene22271:intron	30.0%
AATAACTCACGAGAAAAGAA+AGG	+	chr5.4:3431245-3431264	None:intergenic	30.0%
AATATACTCATGAAAGATGC+TGG	-	chr5.4:3430087-3430106	MS.gene22271:intron	30.0%
AATATTGCTGAAAAATGGGT+AGG	+	chr5.4:3431999-3432018	None:intergenic	30.0%
AATCTCAAGTCTTTATCACA+GGG	-	chr5.4:3428287-3428306	MS.gene22271:intron	30.0%
AGAAAGATGATAGAAGTCTA+TGG	-	chr5.4:3429643-3429662	MS.gene22271:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	3428134	3432291	3428134	ID=MS.gene22271
chr5.4	mRNA	3428134	3432291	3428134	ID=MS.gene22271.t1;Parent=MS.gene22271
chr5.4	exon	3432117	3432291	3432117	ID=MS.gene22271.t1.exon1;Parent=MS.gene22271.t1
chr5.4	CDS	3432117	3432291	3432117	ID=cds.MS.gene22271.t1;Parent=MS.gene22271.t1
chr5.4	exon	3430162	3432017	3430162	ID=MS.gene22271.t1.exon2;Parent=MS.gene22271.t1
chr5.4	CDS	3430162	3432017	3430162	ID=cds.MS.gene22271.t1;Parent=MS.gene22271.t1
chr5.4	exon	3429998	3430097	3429998	ID=MS.gene22271.t1.exon3;Parent=MS.gene22271.t1
chr5.4	CDS	3429998	3430097	3429998	ID=cds.MS.gene22271.t1;Parent=MS.gene22271.t1
chr5.4	exon	3429238	3429297	3429238	ID=MS.gene22271.t1.exon4;Parent=MS.gene22271.t1
chr5.4	CDS	3429238	3429297	3429238	ID=cds.MS.gene22271.t1;Parent=MS.gene22271.t1
chr5.4	exon	3428134	3428195	3428134	ID=MS.gene22271.t1.exon5;Parent=MS.gene22271.t1
chr5.4	CDS	3428134	3428195	3428134	ID=cds.MS.gene22271.t1;Parent=MS.gene22271.t1

Gene Sequence

>MS.gene22271

ATGGTGGGTGTTCTTATTGCATCCCTCAAGGATTTCATCACCCACAATCACTTATCAAATGCATTCAAAACCTTCATACACATACAACACCACCATGCTTCATCTTTTGATATTATCTTTCAACCCATTAAACATCTTTTATTGGGTTGCACAAATCTCAAGTCTTTATCACAGGGTAAACAAATTCATGCTCATATTATCTCATTGGGTATTGATAAAAATCCAATCTTGGTTTCAAAGCTTATTAATTTCTATGCTAGTGTTGATTTACTAGCTGATGCTCAAATTGTTGCTGAGTGTTCAAATAGTTTTGATCCTTTGCATTGGAATATGGCTATTTCTTTGTATGTTAAGAATTGTTTGTTTGAGAATGCAATTTCTGTTTATAGGAGAATGTTGAGTAAGGGTGTTATACCGGATGATTATACTTATCCGTCGGTTCTTAAGGCTTGTGGGGAGTTATTGGATTATGATAGTGGTGTGAAGGTTCATAGGTCTATTCAGCAGAGTTCTATTAAGTGGAGTTTGTTTGTTCATAATGCGTTGGTGTTTATGTATGGTAGGTTTGGGAAGTTAGAGGTGGCTCGTGAACTGTTTGATATTATGCCGGCTAGAGATGATGTTTCGTGGAATACTATGATTAGTTGTTATGCTTCTAGGGGTTTGTGGGATGAAGCGTTTCGGTTATTTGGATGTATGCGAGAGGCAGGTATTGAAAGGAATGTTATTATATGGAATACCATTGCTGGAGGGTGCTTGCATACGGGAAATTTTATAGGGGCGCTTAAGTTGTTTTCTCAAATGAGAGCAGTGATTCAGTTGGACTCTGTTGCAATGGTTGTTGGATTGAATGCATGTTCGCACATTGGAGCGGTTAAATTGGGAAAGGAGATTCATGGTCATGCTGTAAGAACTTGCTTTGATGTGTTTGACAACGTAAAAAACGCATTAATTACAATGTATTCCAGGTGTAGAGATCTCAACCATGCATATTTGTTATTTCGAAAAATGGATGAGAAAGGTTTGATCACATGGAATGCCATGCTTTCTGGGTTTGCTCACCTGGATCGATCTGAGGAAGTCTCCTTCCTTTTTAGAGAAATGCTACGTGAGGGCGTTGAGCCTAATTATGTGACCATTGCAAGCGTCCTTCCCCTTTGCGCTCGAATAGCAAATCTACAACATGGTAAAGAGTTTCATTGCTACATGATAAAGCGTGAAGAACAGTTCAAGGGCTATTTATTATTGTGGAACTCACTGGTGGAAATGTATTCAAGGTCTGGCAAAGTTTTAGAAGCCAGGAAAGTCTTTGATTCATTAAGCAGGAAAGATGAAGTCACATATACTTCCATGATTATGGGATATGGTGTGAGTGGGGATGGAGAAACTGCTCTAAAATTATTTGCAGAGATGCGCAGGCTCAATATTAAACCGGATCACGTGACAATGGTTGCAGTTCTAACAGCATGTAGTCATTCTGGCCTTGTAGCACAAGGGCAATTGCTATTTAGAAAGATGATAGAAGTCTATGGAATAGATCCTAGGGTTGAGCACTATTCATGCATGGTTGATCTCTTTGGAAGGGCTGGTCTTCTCGACAAAGCAAAGGAGGTTATCACAGGGATGTCATGCAAGCCTACTTCGGCAATATGGGCTACTCTAATAGGAGCTTGTAAAATCCACGAAAATACAGTGATTGGGGAATGGGCTGCAGGAAAGTTGCTGGAAATGAAGCCTGATCATTCAGGTCATTGTTTGTTGATGGCAAATATGTATGCAGCTGCTGGTTTGACGAACAAAGAAGCTGAAGCGAGGACTTATATGAGGGATTCAGGTGTGAAAAGGACTCCTGGTTGTGCTTGGGTTGATGTTGGCAGGGAGCATTGTCCCTTTTTAGCTGGGGACACCTCCAACCCTCGTTCAGGCGAGATTTCCCCCTTGATGAAAAGGATGAATATACTCATGAAAGATGCTGGTTATGTACCTAGCAAAGGGGTTGTCTCATCTGAGGAAGATATTGAGGAGTTGAGTATGATAGGGAATGAACTCATCAAAGATGCTGGTTATGTACCAAGCGAAGGGGTTGTCTCATCTGAGGAAGATTTTGAGGAGTTGAGTATGATAGGGAATGTAAGCTGAATACAAGTTAAAAATATTTTTAAATGGCTATTCATGTACTTAAAACACGTGGCAGATTTTTAGTACTAGTTACAATTACAAAGTTACATTCCCACATGCACAACCCACAGAGCAGAAATATGCCAGGTCAAGCAGCATAATTGAAGAGTACATCGGTAATGATATTTTTTTTTCTCTCTTAATTGCATTTGATTTTTATTTAACAGTTATGCAGTCACGGTCCATGATGTTAATGCAACAAGCTATGAAAGTAAGAATTACTAAATACCTTCATTTTCTAATCTTTTTCAACAATCCACTCTATAAGCAAATGTTGTTTATTATCACAAATCATAGTGATGTGAAAGATCTTTTTTATTGATTAATAATTTCATCTCCCTGATCATATGTCTGTTAATGCATCCTCTTTTTTGCATTTGTTCATGCATCCTTCTGTAATGTGGTTACAAACTAAATGACTTGGTCTTCCTGCCCCGTCACTTATTTCAGGTCTAATTGGCTTCTATGTGCACTTCTAAAATTTATCTTCTTACTATAATATAATGATCAATTGTTACTCTGTCTTTACATGCATATGGAATTTAATGAAATGTAGCTATTTGCATGTTCCTATTAAATGAGCCAAGGAATAGAGTCAATGTAAAGATATTACAGGTTTTGTTAAAAAAATCGAGTTCGCTGAGCTTACCTTGTCTGTTTATCGATGAAAATTATGTGGTTGTTCTATTATGTGTATATAGCTTTGGTCTATAATTTTGTAATGCACATACTCTTTTATCTGGATGAAAAATTGCAGTTAAAATTGTCTTTTGCTATTTTATTGAAGAAAATTGATTGGCGTTGATTTGATTGAAGTTTTGGCATATGCAAAGCAGGGTCATGGACAATTTGGTGTGCAAGTTGAGAGCAACAGAGGTAAAATTTCCTCATTAAAATCGTGTTGTATAATTTTGGACTGTATTAACATGCCCTTTCTTTTCTCGTGAGTTATTACAAGTAGGCTATGCAACCGTCTATGCTTACCATGTAGTAATTGACTAAGAGAAAATCACAAGGCATACTTTAGATAAGTTAAAAAATTTGAGTGCAGTTTGTAATTAGACCTAAAGTACAGTGTTGAAACTGAACTGTTTTAAAAATAAGTGAGATCACCAGTTTGTGCGGATCAATTTTTGTAGTTCGGGTTCGGTTAGTGAAACATGTTTGAAACACCAGTTCAGTTCGTCTACTCATAGAAACGGTTTGGTTTGTTTTTGTGTTGTATATGGTTTGGTTTTACAGTTGGGTTCTGTTTTTCAGTTTTTTGAATAGTCCTAACTAACTGCTAAGATAGTTCCTTGAATTCCCAGAACCAAAGCATTTTCTTCGGCCTCATTATTTTGTTTTGCTTTGGGTGTTTGGGTTGTTGGTGTCCCATATATTTGCAGTGCCATTCGTATCTGTTTCTTTGTTTCTCCGCGAGTGTTTTGCGCCTTGCAATCCTCGTCGTAATAAATTTGCCGTAAAAAAAAAAAAAAAGCATTTTCTTAGTCCTTGGGATTGTTGTACTCTATACTGTGTTTTTTATGTAAAAAAAGATTAGGTTTTTATATTATGAAATAGGGTGAGAGTGCTTTTATTGGTAATTTTATTTGACTTTAGTGAATAATTAGCTTTCACTCTATCAGTTGAAATATAAAGACTGCCACAGATACTAACATAAACATAGTATTTTTAAGTTTTTCCTACCCATTTTTCAGCAATATTCTTTTCTACCAAAAATAAACTGTTCTTTCTTTTTTCTTCAAAAATTTGTTCCTCCTTCCTTCTTGCCCCATACTATTATTCTCAATGTTATGAATTATGATATCTTTTCTGCTCAGAAAATTTGTGAATCTTTATATACATCTTGGTGTGGGTTTATGCAATCTTGTGGTATAAATTTCATTAAGCAAAACACTTTGTTAAATTTCTATAGGATCCATGGCATCTGTCCTCAACAATGGAGATAAGAAGGCTGTTAATGGTGCAAGAAGTTGA

Protein sequence

>MS.gene22271.t1

MVGVLIASLKDFITHNHLSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQADAQIVAECSNSFDPLHWNMAISLYVKNCLFENAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVKVHRSIQQSSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNVIIWNTIAGGCLHTGNFIGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLNHAYLLFRKMDEKGLITWNAMLSGFAHLDRSEEVSFLFREMLREGVEPNYVTIASVLPLCARIANLQHGKEFHCYMIKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLTACSHSGLVAQGQLLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIHENTVIGEWAAGKLLEMKPDHSGHCLLMANMYAAAGLTNKEAEARTYMRDSGVKRTPGCAWVDVGREHCPFLAGDTSNPRSGEISPLMKRMNILMKDAGYVPSKGVVSSEEDIEELSMIGNELIKDAGYVPSEGVVSSEEDFEELSMIGNIFSTSYNYKVTFPHAQPTEQKYARSSSIIEEYIVLAYAKQGHGQFGVQVESNRGSMASVLNNGDKKAVNGARS