AlfalfaGEDB | MS.gene067102

M. sativa cultivar XinJiangDaYe / MS.gene067102

KEGG: -
GO: -
PFAM: PF14309.9 PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067102.t1	XP_013451319.1	91	885	75	1	1	880	1	885	0.00E+00	1547.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067102.t1	A0A072U6K8	91.0	885	75	1	1	880	1	885	0.0e+00	1547.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051199	MS.gene067102	0.813663	2.28E-51	-1.69E-46
MS.gene05157	MS.gene067102	0.804853	1.77E-49	-1.69E-46
MS.gene051664	MS.gene067102	0.817509	3.18E-52	-1.69E-46
MS.gene051719	MS.gene067102	0.801992	6.93E-49	-1.69E-46
MS.gene051720	MS.gene067102	0.831558	1.56E-55	-1.69E-46
MS.gene051744	MS.gene067102	0.802766	4.80E-49	-1.69E-46
MS.gene053144	MS.gene067102	0.802428	5.64E-49	-1.69E-46
MS.gene053296	MS.gene067102	0.810819	9.53E-51	-1.69E-46
MS.gene054584	MS.gene067102	0.802633	5.11E-49	-1.69E-46
MS.gene054791	MS.gene067102	0.803002	4.29E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067102.t1	MTR_6g018770	93.785	885	50	1	1	880	1	885	0.0	1589
MS.gene067102.t1	MTR_7g082220	48.361	976	372	31	1	879	1	941	0.0	655
MS.gene067102.t1	MTR_4g008820	46.555	479	196	19	13	467	210	652	1.29e-81	277
MS.gene067102.t1	MTR_7g112030	36.538	104	64	2	770	873	807	908	1.50e-13	75.5
MS.gene067102.t1	MTR_1g083850	29.213	178	111	6	703	872	577	747	2.22e-13	74.7
MS.gene067102.t1	MTR_2g034810	25.000	184	119	7	698	875	753	923	7.89e-11	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067102.t1	AT1G67040	30.810	938	471	40	1	872	1	826	4.47e-80	276
MS.gene067102.t1	AT1G67040	30.704	938	470	41	1	872	1	824	2.42e-79	274

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Find 158 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCTCTGCGTAGCAT+CGG	0.555522	6.3:+14839032	None:intergenic
AAACAAGTTTATTAGCGTGA+TGG	0.570139	6.3:+14841260	None:intergenic
AAAGCCTAAGTGGTCGAACT+CGG	0.604253	6.3:-14840532	MS.gene067102:CDS
AAAGGCTCCTTTATGCATGA+AGG	0.595904	6.3:-14838902	MS.gene067102:CDS
AAATACCGATAAGATGAACA+AGG	0.690927	6.3:-14840354	MS.gene067102:CDS
AAATGTCACTAGGAGCAATG+AGG	0.653408	6.3:-14839115	MS.gene067102:CDS
AACAGAAGCTGAAAGAATTA+AGG	0.344196	6.3:-14840205	MS.gene067102:CDS
AACTAAACCAAGTAATTGAT+TGG	0.409723	6.3:-14838816	MS.gene067102:CDS
AAGAACAATTTATAGAGCCA+GGG	0.617947	6.3:+14839349	None:intergenic
AAGAAGAATAATCAAAAGCT+AGG	0.529032	6.3:-14842695	MS.gene067102:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGTTTATTAGCGTGA+TGG	+	chr6.3:14840161-14840180	None:intergenic	30.0%
AAATACCGATAAGATGAACA+AGG	-	chr6.3:14841064-14841083	MS.gene067102:CDS	30.0%
AACAGAAGCTGAAAGAATTA+AGG	-	chr6.3:14841213-14841232	MS.gene067102:CDS	30.0%
AACTAAAAGTAGATGCAGAA+GGG	+	chr6.3:14841435-14841454	None:intergenic	30.0%
AAGAACAATTTATAGAGCCA+GGG	+	chr6.3:14842072-14842091	None:intergenic	30.0%
AAGAATAATCAAAAGCTAGG+TGG	-	chr6.3:14838726-14838745	MS.gene067102:CDS	30.0%
AATGTCAAATGTAAAAGAGG+AGG	-	chr6.3:14841035-14841054	MS.gene067102:CDS	30.0%
AATTACCATTGGATTGTGAT+CGG	-	chr6.3:14839582-14839601	MS.gene067102:intron	30.0%
AATTCTTGAAGAATCAATGC+AGG	+	chr6.3:14841287-14841306	None:intergenic	30.0%
AATTGCTGCCAAAACTATTA+TGG	-	chr6.3:14842466-14842485	MS.gene067102:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	14838672	14842768	14838672	ID=MS.gene067102
chr6.3	mRNA	14838672	14842768	14838672	ID=MS.gene067102.t1;Parent=MS.gene067102
chr6.3	exon	14842600	14842768	14842600	ID=MS.gene067102.t1.exon1;Parent=MS.gene067102.t1
chr6.3	CDS	14842600	14842768	14842600	ID=cds.MS.gene067102.t1;Parent=MS.gene067102.t1
chr6.3	exon	14841979	14842049	14841979	ID=MS.gene067102.t1.exon2;Parent=MS.gene067102.t1
chr6.3	CDS	14841979	14842049	14841979	ID=cds.MS.gene067102.t1;Parent=MS.gene067102.t1
chr6.3	exon	14840064	14841641	14840064	ID=MS.gene067102.t1.exon3;Parent=MS.gene067102.t1
chr6.3	CDS	14840064	14841641	14840064	ID=cds.MS.gene067102.t1;Parent=MS.gene067102.t1
chr6.3	exon	14839472	14839583	14839472	ID=MS.gene067102.t1.exon4;Parent=MS.gene067102.t1
chr6.3	CDS	14839472	14839583	14839472	ID=cds.MS.gene067102.t1;Parent=MS.gene067102.t1
chr6.3	exon	14838672	14839384	14838672	ID=MS.gene067102.t1.exon5;Parent=MS.gene067102.t1
chr6.3	CDS	14838672	14839384	14838672	ID=cds.MS.gene067102.t1;Parent=MS.gene067102.t1

Gene Sequence

>MS.gene067102

ATGAGTGATGATGCTAGTGTGAATGGTTCTTCTTGTTTAGCAATAACTGAGAAGAAGAATAATCAAAAGCTAGGTGGTGGTTGTATTGGAATTTTCTCTCAGCTATTTGATTGGAATAGTAGACTCACAAAGAAGAGATTTTTCACCAAAAAACTTCTTCCTCCTCCTGGTTAGTCTCATCTAATACAAACAAGTTCTGCATTTTATTTTATTTATTTATATATATCACCTATGAAACACGGATACGGATATGGACATCAGACACGACACCACTGATAATCTGAGAAAATCACATAATTCAGTGTAATTTTATGTGTTGGTGTCGTGTCGTGTCGGTGTCAGACACGTACGTGTCTGCCCCAGAACACGTCAAATCTGAGGAGTGTCTGTGCTTCATAGTATCACACACTTGAGGTTGGTAGTGTAAAGGATGCCCTCATTAGATATTGAGGTGACATTGTCAAATGAAAGTGTTTTATGTCCATTTCTATTATTTTCTTAAATAGATGAATAAAGGAAATTTTTATAAAAATGTTAGTTAGTCCAAGATGTATCAATGCTAAAGAGAGCTTTACTTTGTAACAAAGTTCAAATCTCGATTGAGAGAGTTGTAAAATGGATATTAATATCGCCGTTTTTAAAAATGGCCATTGTTCTGATTCTTCTTGTGGATTTTGGAAACTGATGAGTGTTTGGTTTTTTGTTGTAAACTGTGACAGTTAGTGCAAAACAAGATTCTTTGAACAAGTTTAAAGGAGATGACAAAATGCCTAATTCCCAACTCCATTTGGTAAGAACATATGATAGTTTGTGTTGGTCTGAATCAAGTTTTCTTTGGTGTTGAACTTGAAAAGCTTTCTTATAGATTGCGGCGGTCACAAATTCCACGTATTCACACGGTCAGCACTTCAATTACCATTGGATTGTGATCGGACAGTTCATAAAGCAAGCAAATTTTGTTTTTTATAACTCGAAAATACCGAGTTTGAAATTTAGACTGTTTGAACTTGACCTATGGCTTCTGATGTGCTGACAGAGTGATTTTGTTATTGCAGCAAATTTCAATCATTCTTTTAGGTAGTTGCTTATTGTGATTATATTATAATTTATATTTATTTGGATTGTAGATTGCTAATGGGAACAGTCAAGGTTTTTCAAATGCGAAAAAAAGTGGGAATTGTGTTGTAGAAGTAGAACAAAAGCATGAAATGAAAGCACCGAGTCTTGTAGCTAGGTTGATGGGTCTAGAATCAATTCCATCTTCAAAGAGAGATAAATCCAAGAAATCTTCATTTTCTGATAGTGATGATGGTGAGGAGTCTTTGGAGGTCAAAGCTGCGAATGCAAGGCATGAGTCAAGGCCTCAGAAGCTTCGGAAAACGGAGGCGAACGAGAGAAGAGCAGTAACTAGGTTTGGTGCTGATGCATTGCAAATTAAGAGTGTTTTGTCACAAGTGAGAAGGTATAATCATCATCGTCACAATCACCATCACGCTAATAAACTTGTTTCGCCTTTGAAGAGTCCGAGAATTTCTTCGGGAAAGAGTACATCTCGAAGCTCAAGGTTGATAGAAGCGGCTACTAAGATCTTGGAACCTGGTTTGCAGGCTACAAACAGATCCAAATGTTTTCTTGCATCTTCCATTTCAAAGTGTCCTACCAATAACGGCATTGTGACAGAAATGGCTGGAACTCGGCCACAAGATATACACAATCAATCATGTTATAATTCTGGTATAGACAAGTCATTAGGGGAGCATACATGCAAAAACTGCGGCAATTCGCTTGATGTTGAGATCAGCAGACCTATTGTTTCAAATGTTTTCACCGACTTCTCTTCAGCATCGGCGAAAAACAAAAGGTCGTTCATACCCTCTCATGAAAATGATGTAGTTCTTCTCAGAAGCCAGGAGAAGATCATAGCTCATGTTGATGGTGATGTTAAAAAGAATGCTTATGCTTGTAATGAATCCACTTCCAGAAGAATATATGTGCTTGCAAAATGCGATTCATCAAGCAAACCGCATGGAGGCTTAAAGGATGATGGTGTATCGTCTTTTTCCTTCAAACATAAAACTCAAACACAAGAAGGGATGTTAAGCAATGAAAGAATATCGTTTGAATCTAGAAATAGTAATATGCAAGAGAAGAGAGTCTCATCAGCTGCAACTTCAAGCACTGTGAGTGGAAATAAAGACTTTGTCGGTTTGAATCAAAGCCTAAGTGGTCGAACTCGGATAAGATCTCCTACGAAGGCAGATAGATGCAAATTTGATCTAGAAAGGAAACCTTCAAGCAGACAAGGTTCTGATGCACAAGGAGAAAAAAGGAAGAATTTTGACGCTTTCTCTCCAAACAATTCTAATGTCAAATGTAAAAGAGGAGGTTATCAAAATACCGATAAGATGAACAAGGTAGTACCATCTACCTTTAGTTCACCTCTAAAGAAAAAGGAAGAGACAAAAAGTGATAATGAGATTAGGACATGTTTCCAAAGACATCATCGACCCCTGAGAGAAGATGTTTTAAGTGCTTTTCTAGAACAGAAGCTGAAAGAATTAAGGTCTAGAGAAAATGAGGAGTTGGTTACTGGTGATCAGCCTAAAAGATCACCTGCATTGATTCTTCAAGAATTGATATCTGTTCTGAATGCGGAGCACCAAACATGTTCCAATGACCAAATGTTCAATGGCAAATGTCCCAAGGTTGGTTTCCATGTGCATTTTCTCTTTCTATATTGTCTAATTGTTATTTCTTTGGCCCTTCTGCATCTACTTTTAGTTATCCCTTATTAGTAAATGTAGGTGATACTCAGTTCCTTATTTTCATTATAATCAATGTTTTTAATTGACATCGTTTTTTGGTCCTACAAATCATATGTTGGATATTAGTTATGGGGAAACCTTAGATTGAAAGCATGTCTGGTGTCCGACATGCCATCAATACATTGATTATATTCAATTACTTTCATTTTCTCAAATTATTATTGGTGTCAACGTGTCAGTATTAATGACGTGATTGGTGTCCGTGTCGGTGCTTCATAGCTTATAGCCAAAGAGTTTTTTCTTATACTCGGTTTAAGCGCGATCTCTCTGTTAAATGTAATGTTTTATTTAAGCTTGTGCTTTGGTTGGCACTTTACGACTATTATATATGACATCATACCTTGTTTCTACGCATATCAGTGTGAGACAAATCATGTTGGATTATTCGGAACCTCTTGCAATGGTAATCATCTCAGTCCTGGATCAGTCTTGGAAGCTTCCTTTTCTTCCAGTAGTCTCGATGAAGGCTCAGGTAAACGCAGTTAAGAAAATATGATTTCTAATTTTCATTAGTTTAATCCTCTCGTTTTAATGTCTTTGATCTTCAATTTGATTCCAGGGCTTTGTTTTCACCCTGGCTCTATAAATTGTTCTTACGACCAACCTGAACGGTTGAAACATGAAGGCGAACTGTTAGATTCCGCAGCATCATTTAACACAGGAAAGATAGGTTGTAAGATACTGACCAAACTTGTTTACCGAATTGATAAGATATTGCAAAGTTTAAATTCTTTTTGGACAAGATTGACAGAAAGCAAGCTGGATCATATGAAAGAAGTTATCTTCATTGCTGAATTGGTTCTTGGAAATGTCACTAGGAGCAATGAGGGAGGAGTATTGCCACAGCTTCTCATTTCTTGCATACTTCTCGATGAACTCAACATTGCAACCGATGCTACGCAGAGGAATTTTAATCGAAACCAACTTAAGGGATTTCTGTTTGATTGTGTAATAGAGTATCTCGAGTCAAATTGCTGCCAAAACTATTATGGTGTGTTTAAGTCATGGTGTGCATGGACAAAGGCTCCTTTATGCATGAAGGCTGAGATTTTGGTTCAAGAGGTTAAGAGTGAGATTAAGAAGTGGGAATGTATGGTTGGCATGGAACTAAACCAAGTAATTGATTGGGAGATGAGTCACTCATTGGGAAAATGGACTGATTTCGACATTGAAGCTTTTGAGGCGGGTGTTGATATTGGTGAAGATGTGCTTCAAATTTTGGTCGATGAAATTGTTGAAGATCTTGTAGATTTTAGGCATGGTACTATTTGA

Protein sequence

>MS.gene067102.t1

MSDDASVNGSSCLAITEKKNNQKLGGGCIGIFSQLFDWNSRLTKKRFFTKKLLPPPVSAKQDSLNKFKGDDKMPNSQLHLIANGNSQGFSNAKKSGNCVVEVEQKHEMKAPSLVARLMGLESIPSSKRDKSKKSSFSDSDDGEESLEVKAANARHESRPQKLRKTEANERRAVTRFGADALQIKSVLSQVRRYNHHRHNHHHANKLVSPLKSPRISSGKSTSRSSRLIEAATKILEPGLQATNRSKCFLASSISKCPTNNGIVTEMAGTRPQDIHNQSCYNSGIDKSLGEHTCKNCGNSLDVEISRPIVSNVFTDFSSASAKNKRSFIPSHENDVVLLRSQEKIIAHVDGDVKKNAYACNESTSRRIYVLAKCDSSSKPHGGLKDDGVSSFSFKHKTQTQEGMLSNERISFESRNSNMQEKRVSSAATSSTVSGNKDFVGLNQSLSGRTRIRSPTKADRCKFDLERKPSSRQGSDAQGEKRKNFDAFSPNNSNVKCKRGGYQNTDKMNKVVPSTFSSPLKKKEETKSDNEIRTCFQRHHRPLREDVLSAFLEQKLKELRSRENEELVTGDQPKRSPALILQELISVLNAEHQTCSNDQMFNGKCPKCETNHVGLFGTSCNGNHLSPGSVLEASFSSSSLDEGSGLCFHPGSINCSYDQPERLKHEGELLDSAASFNTGKIGCKILTKLVYRIDKILQSLNSFWTRLTESKLDHMKEVIFIAELVLGNVTRSNEGGVLPQLLISCILLDELNIATDATQRNFNRNQLKGFLFDCVIEYLESNCCQNYYGVFKSWCAWTKAPLCMKAEILVQEVKSEIKKWECMVGMELNQVIDWEMSHSLGKWTDFDIEAFEAGVDIGEDVLQILVDEIVEDLVDFRHGTI