Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067575.t1 | AQQ72605.1 | 96.6 | 355 | 6 | 2 | 1 | 354 | 1 | 350 | 8.50E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067575.t1 | Q8W245 | 59.9 | 367 | 131 | 4 | 1 | 354 | 1 | 364 | 2.4e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067575.t1 | A0A1S5XVC2 | 96.6 | 355 | 6 | 2 | 1 | 354 | 1 | 350 | 6.1e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054706 | MS.gene067575 | 0.810227 | 1.28E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene067575 | 0.82062 | 6.23E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene067575 | 0.82185 | 3.24E-53 | -1.69E-46 |
| MS.gene056920 | MS.gene067575 | 0.809669 | 1.69E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene067575 | 0.810398 | 1.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067575 | MS.gene009810 | PPI |
| MS.gene067575 | MS.gene54167 | PPI |
| MS.gene067575 | MS.gene50197 | PPI |
| MS.gene067575 | MS.gene56999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067575.t1 | MTR_4g083570 | 96.620 | 355 | 6 | 2 | 1 | 354 | 1 | 350 | 0.0 | 689 |
| MS.gene067575.t1 | MTR_8g105030 | 55.952 | 336 | 146 | 2 | 13 | 348 | 14 | 347 | 1.59e-127 | 371 |
| MS.gene067575.t1 | MTR_2g064310 | 48.169 | 355 | 182 | 1 | 2 | 354 | 4 | 358 | 6.22e-115 | 338 |
| MS.gene067575.t1 | MTR_3g082050 | 52.260 | 354 | 147 | 6 | 10 | 354 | 9 | 349 | 8.25e-111 | 327 |
| MS.gene067575.t1 | MTR_3g081640 | 48.774 | 367 | 169 | 5 | 1 | 354 | 1 | 361 | 2.37e-110 | 326 |
| MS.gene067575.t1 | MTR_3g082050 | 54.294 | 326 | 131 | 5 | 38 | 354 | 56 | 372 | 2.04e-109 | 324 |
| MS.gene067575.t1 | MTR_3g082050 | 54.294 | 326 | 131 | 5 | 38 | 354 | 61 | 377 | 2.80e-109 | 324 |
| MS.gene067575.t1 | MTR_3g081580 | 50.430 | 349 | 164 | 4 | 14 | 354 | 11 | 358 | 1.06e-105 | 314 |
| MS.gene067575.t1 | MTR_3g081690 | 51.988 | 327 | 135 | 6 | 10 | 327 | 9 | 322 | 2.80e-100 | 300 |
| MS.gene067575.t1 | MTR_3g081690 | 54.181 | 299 | 119 | 5 | 38 | 327 | 56 | 345 | 6.02e-99 | 297 |
| MS.gene067575.t1 | MTR_3g104400 | 42.500 | 360 | 173 | 4 | 29 | 354 | 6 | 365 | 1.64e-89 | 273 |
| MS.gene067575.t1 | MTR_6g007687 | 41.667 | 324 | 180 | 2 | 29 | 351 | 29 | 344 | 2.31e-86 | 265 |
| MS.gene067575.t1 | MTR_1g016120 | 39.837 | 369 | 175 | 6 | 27 | 354 | 12 | 374 | 2.75e-82 | 255 |
| MS.gene067575.t1 | MTR_5g071990 | 41.390 | 331 | 158 | 9 | 35 | 354 | 13 | 318 | 4.28e-76 | 237 |
| MS.gene067575.t1 | MTR_3g081690 | 50.926 | 216 | 88 | 5 | 121 | 327 | 25 | 231 | 2.17e-56 | 184 |
| MS.gene067575.t1 | MTR_3g081690 | 61.429 | 140 | 52 | 1 | 188 | 327 | 50 | 187 | 1.02e-53 | 176 |
| MS.gene067575.t1 | MTR_3g081690 | 61.429 | 140 | 52 | 1 | 188 | 327 | 72 | 209 | 6.18e-53 | 175 |
| MS.gene067575.t1 | MTR_3g058630 | 25.180 | 278 | 179 | 8 | 87 | 353 | 89 | 348 | 1.28e-17 | 83.2 |
| MS.gene067575.t1 | MTR_4g006710 | 37.778 | 90 | 55 | 1 | 37 | 126 | 25 | 113 | 4.00e-13 | 65.9 |
| MS.gene067575.t1 | MTR_3g081630 | 55.556 | 54 | 24 | 0 | 77 | 130 | 17 | 70 | 9.59e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067575.t1 | AT1G31260 | 63.905 | 338 | 115 | 4 | 23 | 354 | 28 | 364 | 7.96e-152 | 432 |
| MS.gene067575.t1 | AT4G19690 | 59.155 | 355 | 129 | 3 | 4 | 354 | 5 | 347 | 4.54e-146 | 417 |
| MS.gene067575.t1 | AT4G19680 | 55.966 | 352 | 143 | 4 | 9 | 354 | 5 | 350 | 5.56e-134 | 386 |
| MS.gene067575.t1 | AT2G04032 | 51.507 | 365 | 166 | 4 | 1 | 354 | 1 | 365 | 2.66e-127 | 370 |
| MS.gene067575.t1 | AT1G05300 | 49.405 | 336 | 158 | 5 | 27 | 354 | 29 | 360 | 1.17e-103 | 309 |
| MS.gene067575.t1 | AT2G32270 | 47.401 | 327 | 150 | 3 | 28 | 354 | 35 | 339 | 9.28e-100 | 298 |
| MS.gene067575.t1 | AT3G12750 | 46.499 | 357 | 178 | 6 | 3 | 354 | 7 | 355 | 9.93e-99 | 296 |
| MS.gene067575.t1 | AT5G62160 | 43.855 | 358 | 189 | 6 | 3 | 354 | 4 | 355 | 1.84e-92 | 280 |
| MS.gene067575.t1 | AT4G19680 | 54.941 | 253 | 102 | 4 | 9 | 255 | 5 | 251 | 3.11e-90 | 271 |
| MS.gene067575.t1 | AT1G10970 | 41.096 | 365 | 176 | 2 | 29 | 354 | 10 | 374 | 1.33e-88 | 271 |
| MS.gene067575.t1 | AT1G10970 | 41.096 | 365 | 176 | 2 | 29 | 354 | 10 | 374 | 1.33e-88 | 271 |
| MS.gene067575.t1 | AT1G60960 | 39.737 | 380 | 175 | 5 | 29 | 354 | 36 | 415 | 2.49e-82 | 256 |
| MS.gene067575.t1 | AT1G60960 | 39.737 | 380 | 175 | 5 | 29 | 354 | 46 | 425 | 3.85e-82 | 256 |
| MS.gene067575.t1 | AT4G33020 | 36.745 | 381 | 187 | 5 | 21 | 354 | 18 | 391 | 2.73e-76 | 240 |
| MS.gene067575.t1 | AT2G30080 | 40.000 | 345 | 162 | 8 | 36 | 354 | 16 | 341 | 5.67e-73 | 230 |
| MS.gene067575.t1 | AT4G33020 | 37.536 | 349 | 164 | 5 | 53 | 354 | 3 | 344 | 1.00e-70 | 224 |
| MS.gene067575.t1 | AT1G05300 | 47.699 | 239 | 113 | 5 | 23 | 253 | 25 | 259 | 1.62e-60 | 196 |
| MS.gene067575.t1 | AT4G19690 | 50.244 | 205 | 86 | 3 | 4 | 204 | 5 | 197 | 3.40e-60 | 193 |
| MS.gene067575.t1 | AT1G60960 | 36.905 | 168 | 89 | 2 | 29 | 181 | 46 | 211 | 1.39e-26 | 107 |
Find 81 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGTCTCTCATGGCTAAA+TGG | 0.207478 | 4.1:+24243882 | MS.gene067575:CDS |
| TTCGCGGCTGGTATTATTCT+TGG | 0.240329 | 4.1:+24242605 | MS.gene067575:CDS |
| CTGCTGATTTCATGAGTAAA+AGG | 0.266636 | 4.1:+24243798 | MS.gene067575:CDS |
| GAGATTGGTGATGTTAATAT+TGG | 0.296837 | 4.1:+24242842 | MS.gene067575:CDS |
| AGTTGCTAAGATTGAGAATA+TGG | 0.306889 | 4.1:-24242495 | None:intergenic |
| AATAATACGTGCTCAATAAA+AGG | 0.315250 | 4.1:+24243303 | MS.gene067575:CDS |
| GTAGTTCATTCAGTGGTAAT+AGG | 0.316286 | 4.1:+24243261 | MS.gene067575:CDS |
| CCATGCCTTCAAACATTTGA+TGG | 0.321997 | 4.1:-24243347 | None:intergenic |
| CACAACATCTCGTACGAATC+AGG | 0.323449 | 4.1:-24242650 | None:intergenic |
| TCGCGGCTGGTATTATTCTT+GGG | 0.375353 | 4.1:+24242606 | MS.gene067575:CDS |
| ATTATGAAAAGATCTCCTTC+TGG | 0.382856 | 4.1:-24242572 | None:intergenic |
| TTCTCAATTACAACACCTCT+TGG | 0.401281 | 4.1:+24243647 | MS.gene067575:CDS |
| GATGTTGTGGAGTGATTGTT+TGG | 0.410026 | 4.1:+24242664 | MS.gene067575:CDS |
| TCTTGAACCCATGATGAATA+TGG | 0.411099 | 4.1:-24242883 | None:intergenic |
| ACACCTCTTGGAATTGCAAT+AGG | 0.413916 | 4.1:+24243659 | MS.gene067575:CDS |
| TTTGTTGTTGCAACTGTTTG+TGG | 0.418785 | 4.1:-24242444 | None:intergenic |
| CTCCTTCTGGGCTTAAAGCC+GGG | 0.423076 | 4.1:-24242559 | None:intergenic |
| CATTCAGTGGTAATAGGACT+TGG | 0.426048 | 4.1:+24243267 | MS.gene067575:CDS |
| ATCTTAGCAACTAGTGTGAT+TGG | 0.426800 | 4.1:+24242506 | MS.gene067575:CDS |
| CCATCAAATGTTTGAAGGCA+TGG | 0.429134 | 4.1:+24243347 | MS.gene067575:CDS |
| TTATGAAAAGATCTCCTTCT+GGG | 0.444575 | 4.1:-24242571 | None:intergenic |
| TGCTTCCATCAAATGTTTGA+AGG | 0.446007 | 4.1:+24243342 | MS.gene067575:CDS |
| TCATCTCCACCATTGCTCTC+TGG | 0.458056 | 4.1:-24242815 | None:intergenic |
| TACTAGTTATTATAGTAAGA+AGG | 0.459307 | 4.1:+24242772 | MS.gene067575:CDS |
| GCTGGTATTATTCTTGGGAC+CGG | 0.460618 | 4.1:+24242611 | MS.gene067575:CDS |
| CATAGCCACAAGTCCCGAAA+AGG | 0.460897 | 4.1:-24242711 | None:intergenic |
| CCAACGGTGATTAGTGCTAC+TGG | 0.463209 | 4.1:-24243716 | None:intergenic |
| AATGTCTCTCATGGCTAAAT+GGG | 0.469779 | 4.1:+24243883 | MS.gene067575:CDS |
| TCTTGGTGGCTGCATTCTCC+AGG | 0.469784 | 4.1:+24243371 | MS.gene067575:CDS |
| TCTCCTTCTGGGCTTAAAGC+CGG | 0.479091 | 4.1:-24242560 | None:intergenic |
| TTGCTTAATGCATCATCTGC+TGG | 0.479417 | 4.1:+24243740 | MS.gene067575:CDS |
| CTGGTATTATTCTTGGGACC+GGG | 0.483697 | 4.1:+24242612 | MS.gene067575:CDS |
| TATTGAGCACGTATTATTGG+AGG | 0.484451 | 4.1:-24243298 | None:intergenic |
| GATTGGTGTGTGTTTACCCT+TGG | 0.492007 | 4.1:+24242523 | MS.gene067575:CDS |
| TATAGTAAGAAGGGTAAGAG+TGG | 0.492096 | 4.1:+24242782 | MS.gene067575:CDS |
| GTTCTTAAAGAATGCAATGT+TGG | 0.492455 | 4.1:+24243616 | MS.gene067575:CDS |
| CATCAAATGTTTGAAGGCAT+GGG | 0.494735 | 4.1:+24243348 | MS.gene067575:CDS |
| ATGTTTGAAGGCATGGGTCT+TGG | 0.494950 | 4.1:+24243354 | MS.gene067575:CDS |
| TTTGAAGGCATGGGTCTTGG+TGG | 0.502758 | 4.1:+24243357 | MS.gene067575:CDS |
| CTCTTTGTAACTCGTTGACA+TGG | 0.505121 | 4.1:-24243687 | None:intergenic |
| CATAATCGTGAAATGTTTCG+CGG | 0.505305 | 4.1:+24242589 | MS.gene067575:CDS |
| ACGTTATCGCGTAGTGGTCA+TGG | 0.509828 | 4.1:+24242934 | MS.gene067575:CDS |
| GTAGCAGTATTCCTTGGTGC+TGG | 0.511964 | 4.1:+24243857 | MS.gene067575:CDS |
| TTTCATGAGTAAAAGGATGC+AGG | 0.512721 | 4.1:+24243805 | MS.gene067575:CDS |
| AAAATACAGGTATTAGAACT+TGG | 0.513674 | 4.1:+24243234 | MS.gene067575:intron |
| GGTGGTCACCATATTCATCA+TGG | 0.520218 | 4.1:+24242875 | MS.gene067575:CDS |
| CTTGGCGACACGTTCAATCC+CGG | 0.523996 | 4.1:+24242541 | MS.gene067575:CDS |
| TCTTATGTAGCAGTATTCCT+TGG | 0.528829 | 4.1:+24243851 | MS.gene067575:CDS |
| AGTGGTAATAGGACTTGGAA+TGG | 0.532560 | 4.1:+24243272 | MS.gene067575:CDS |
| ATCGTGAAATGTTTCGCGGC+TGG | 0.535387 | 4.1:+24242593 | MS.gene067575:CDS |
| GCAGTATTCCTTGGTGCTGG+TGG | 0.536079 | 4.1:+24243860 | MS.gene067575:CDS |
| ACTAGTTATTATAGTAAGAA+GGG | 0.546690 | 4.1:+24242773 | MS.gene067575:CDS |
| CTGATTCGTACGAGATGTTG+TGG | 0.549620 | 4.1:+24242651 | MS.gene067575:CDS |
| GGTGGAGATGATCAAGAGAT+TGG | 0.555287 | 4.1:+24242827 | MS.gene067575:CDS |
| CCAGTAGCACTAATCACCGT+TGG | 0.563157 | 4.1:+24243716 | MS.gene067575:CDS |
| TGCTGGTGGAATGTCTCTCA+TGG | 0.563652 | 4.1:+24243874 | MS.gene067575:CDS |
| TGGAATTGTAGTTCATTCAG+TGG | 0.570042 | 4.1:+24243254 | MS.gene067575:CDS |
| CGGGATTGAACGTGTCGCCA+AGG | 0.570970 | 4.1:-24242540 | None:intergenic |
| CTCCGCGGTGATCACAATGA+TGG | 0.573156 | 4.1:+24242736 | MS.gene067575:CDS |
| GTGGTAATAGGACTTGGAAT+GGG | 0.573923 | 4.1:+24243273 | MS.gene067575:CDS |
| ACAACATCTCGTACGAATCA+GGG | 0.576077 | 4.1:-24242649 | None:intergenic |
| TTCATGAGTAAAAGGATGCA+GGG | 0.578472 | 4.1:+24243806 | MS.gene067575:CDS |
| GTGGTCACCATATTCATCAT+GGG | 0.584783 | 4.1:+24242876 | MS.gene067575:CDS |
| ATAGCCACAAGTCCCGAAAA+GGG | 0.585128 | 4.1:-24242710 | None:intergenic |
| ATCCCGGCTTTAAGCCCAGA+AGG | 0.597081 | 4.1:+24242557 | MS.gene067575:CDS |
| GGGATTGAACGTGTCGCCAA+GGG | 0.597907 | 4.1:-24242539 | None:intergenic |
| GTGATTCCAGAGAGCAATGG+TGG | 0.601721 | 4.1:+24242809 | MS.gene067575:CDS |
| AGGGAGTACATGCATGAACC+CGG | 0.608876 | 4.1:-24242630 | None:intergenic |
| GAAAAGGGAAACTCGCGCCA+TGG | 0.616977 | 4.1:-24242695 | None:intergenic |
| ACGCGATAACGTAGAAGTTG+TGG | 0.620330 | 4.1:-24242923 | None:intergenic |
| AAACATTTGATGGAAGCACA+TGG | 0.651723 | 4.1:-24243337 | None:intergenic |
| TGATGCATTAAGCAATCCAA+CGG | 0.658064 | 4.1:-24243732 | None:intergenic |
| ACTTCTACGTTATCGCGTAG+TGG | 0.669693 | 4.1:+24242928 | MS.gene067575:CDS |
| AATATTGGACATTCACATGG+TGG | 0.690269 | 4.1:+24242857 | MS.gene067575:CDS |
| GTTAATATTGGACATTCACA+TGG | 0.691186 | 4.1:+24242854 | MS.gene067575:CDS |
| AGTCCTATTGCAATTCCAAG+AGG | 0.705793 | 4.1:-24243662 | None:intergenic |
| GAGACATTCCACCAGCACCA+AGG | 0.709438 | 4.1:-24243868 | None:intergenic |
| ATTGTTTGGATGAGAAACCA+TGG | 0.713002 | 4.1:+24242678 | MS.gene067575:CDS |
| GTTGTGATTCCAGAGAGCAA+TGG | 0.732938 | 4.1:+24242806 | MS.gene067575:CDS |
| ACTTGTGGCTATGTTCTCCG+CGG | 0.748611 | 4.1:+24242721 | MS.gene067575:CDS |
| GACCATCATTGTGATCACCG+CGG | 0.808072 | 4.1:-24242738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATTAATTGAATATATA+TGG | - | chr4.1:24243420-24243439 | None:intergenic | 10.0% |
| !! | CTAATTTGATATTAAAATAC+AGG | + | chr4.1:24243221-24243240 | MS.gene067575:intron | 15.0% |
| !! | AAATATTGAATCAAATTACC+TGG | - | chr4.1:24243392-24243411 | None:intergenic | 20.0% |
| !! | AATGTTAGAGACATTAAATT+TGG | - | chr4.1:24243112-24243131 | None:intergenic | 20.0% |
| !! | ACTAGTTATTATAGTAAGAA+GGG | + | chr4.1:24242773-24242792 | MS.gene067575:CDS | 20.0% |
| !! | TACTAGTTATTATAGTAAGA+AGG | + | chr4.1:24242772-24242791 | MS.gene067575:CDS | 20.0% |
| !! | TTTATCAACGAAATTAAAGA+TGG | + | chr4.1:24243130-24243149 | MS.gene067575:intron | 20.0% |
| ! | AAAATACAGGTATTAGAACT+TGG | + | chr4.1:24243234-24243253 | MS.gene067575:intron | 25.0% |
| ! | AACACTTCAATCTTTATAAC+AGG | + | chr4.1:24243583-24243602 | MS.gene067575:intron | 25.0% |
| ! | AATAATACGTGCTCAATAAA+AGG | + | chr4.1:24243303-24243322 | MS.gene067575:CDS | 25.0% |
| ! | AATTAGAAGAAGCTGAAATA+AGG | + | chr4.1:24243064-24243083 | MS.gene067575:intron | 25.0% |
| !! | TTTTATTGAGCACGTATTAT+TGG | - | chr4.1:24243304-24243323 | None:intergenic | 25.0% |
| AGTTGCTAAGATTGAGAATA+TGG | - | chr4.1:24242498-24242517 | None:intergenic | 30.0% | |
| ATTACCTTCAATTCATCGAA+GGG | + | chr4.1:24243153-24243172 | MS.gene067575:intron | 30.0% | |
| ATTATGAAAAGATCTCCTTC+TGG | - | chr4.1:24242575-24242594 | None:intergenic | 30.0% | |
| GTTAATATTGGACATTCACA+TGG | + | chr4.1:24242854-24242873 | MS.gene067575:CDS | 30.0% | |
| GTTCTTAAAGAATGCAATGT+TGG | + | chr4.1:24243616-24243635 | MS.gene067575:CDS | 30.0% | |
| TACCAAACGTATTACTAACA+CGG | - | chr4.1:24243529-24243548 | None:intergenic | 30.0% | |
| TTATGAAAAGATCTCCTTCT+GGG | - | chr4.1:24242574-24242593 | None:intergenic | 30.0% | |
| ! | TCTTTTAATCTACATGGCTT+TGG | + | chr4.1:24243763-24243782 | MS.gene067575:CDS | 30.0% |
| !! | AATATGGCTATGAGTTTTAG+AGG | - | chr4.1:24242482-24242501 | None:intergenic | 30.0% |
| !! | GAGATTGGTGATGTTAATAT+TGG | + | chr4.1:24242842-24242861 | MS.gene067575:CDS | 30.0% |
| AATATTGGACATTCACATGG+TGG | + | chr4.1:24242857-24242876 | MS.gene067575:CDS | 35.0% | |
| AATGTCTCTCATGGCTAAAT+GGG | + | chr4.1:24243883-24243902 | MS.gene067575:CDS | 35.0% | |
| AATTCATCGAAGGGTAATGT+AGG | + | chr4.1:24243162-24243181 | MS.gene067575:intron | 35.0% | |
| ACCAAACGTATTACTAACAC+GGG | - | chr4.1:24243528-24243547 | None:intergenic | 35.0% | |
| AGAAGAAGCTGAAATAAGGA+CGG | + | chr4.1:24243068-24243087 | MS.gene067575:intron | 35.0% | |
| ATCTTAGCAACTAGTGTGAT+TGG | + | chr4.1:24242506-24242525 | MS.gene067575:CDS | 35.0% | |
| ATGTCTTCGATTAGAGGAAT+CGG | - | chr4.1:24243501-24243520 | None:intergenic | 35.0% | |
| ATTACCCTTCGATGAATTGA+AGG | - | chr4.1:24243160-24243179 | None:intergenic | 35.0% | |
| ATTGTTTGGATGAGAAACCA+TGG | + | chr4.1:24242678-24242697 | MS.gene067575:CDS | 35.0% | |
| CATAATCGTGAAATGTTTCG+CGG | + | chr4.1:24242589-24242608 | MS.gene067575:CDS | 35.0% | |
| GATTACCTTCAATTCATCGA+AGG | + | chr4.1:24243152-24243171 | MS.gene067575:intron | 35.0% | |
| GTAGTTCATTCAGTGGTAAT+AGG | + | chr4.1:24243261-24243280 | MS.gene067575:CDS | 35.0% | |
| TATAGTAAGAAGGGTAAGAG+TGG | + | chr4.1:24242782-24242801 | MS.gene067575:CDS | 35.0% | |
| TATTGAGCACGTATTATTGG+AGG | - | chr4.1:24243301-24243320 | None:intergenic | 35.0% | |
| TCTTATGTAGCAGTATTCCT+TGG | + | chr4.1:24243851-24243870 | MS.gene067575:CDS | 35.0% | |
| TCTTGAACCCATGATGAATA+TGG | - | chr4.1:24242886-24242905 | None:intergenic | 35.0% | |
| TGATGCATTAAGCAATCCAA+CGG | - | chr4.1:24243735-24243754 | None:intergenic | 35.0% | |
| TGCTTCCATCAAATGTTTGA+AGG | + | chr4.1:24243342-24243361 | MS.gene067575:CDS | 35.0% | |
| TGGAATTGTAGTTCATTCAG+TGG | + | chr4.1:24243254-24243273 | MS.gene067575:CDS | 35.0% | |
| TTCATGAGTAAAAGGATGCA+GGG | + | chr4.1:24243806-24243825 | MS.gene067575:CDS | 35.0% | |
| TTCTCAATTACAACACCTCT+TGG | + | chr4.1:24243647-24243666 | MS.gene067575:CDS | 35.0% | |
| TTTCATGAGTAAAAGGATGC+AGG | + | chr4.1:24243805-24243824 | MS.gene067575:CDS | 35.0% | |
| ! | AAACATTTGATGGAAGCACA+TGG | - | chr4.1:24243340-24243359 | None:intergenic | 35.0% |
| ! | CATCAAATGTTTGAAGGCAT+GGG | + | chr4.1:24243348-24243367 | MS.gene067575:CDS | 35.0% |
| !! | CTGCTGATTTCATGAGTAAA+AGG | + | chr4.1:24243798-24243817 | MS.gene067575:CDS | 35.0% |
| !! | TTTGTTGTTGCAACTGTTTG+TGG | - | chr4.1:24242447-24242466 | None:intergenic | 35.0% |
| !!! | TGCTGGTCTTTTAATCTACA+TGG | + | chr4.1:24243757-24243776 | MS.gene067575:CDS | 35.0% |
| ACAACATCTCGTACGAATCA+GGG | - | chr4.1:24242652-24242671 | None:intergenic | 40.0% | |
| ACACCTCTTGGAATTGCAAT+AGG | + | chr4.1:24243659-24243678 | MS.gene067575:CDS | 40.0% | |
| ACCCGTGTTAGTAATACGTT+TGG | + | chr4.1:24243524-24243543 | MS.gene067575:intron | 40.0% | |
| AGTCCTATTGCAATTCCAAG+AGG | - | chr4.1:24243665-24243684 | None:intergenic | 40.0% | |
| AGTGGTAATAGGACTTGGAA+TGG | + | chr4.1:24243272-24243291 | MS.gene067575:CDS | 40.0% | |
| CATTCAGTGGTAATAGGACT+TGG | + | chr4.1:24243267-24243286 | MS.gene067575:CDS | 40.0% | |
| CCATCAAATGTTTGAAGGCA+TGG | + | chr4.1:24243347-24243366 | MS.gene067575:CDS | 40.0% | |
| CCATGCCTTCAAACATTTGA+TGG | - | chr4.1:24243350-24243369 | None:intergenic | 40.0% | |
| CTCACAGTATCATGGTAGTA+AGG | - | chr4.1:24243193-24243212 | None:intergenic | 40.0% | |
| CTCTTTGTAACTCGTTGACA+TGG | - | chr4.1:24243690-24243709 | None:intergenic | 40.0% | |
| GAATGTCTCTCATGGCTAAA+TGG | + | chr4.1:24243882-24243901 | MS.gene067575:CDS | 40.0% | |
| GATGTTGTGGAGTGATTGTT+TGG | + | chr4.1:24242664-24242683 | MS.gene067575:CDS | 40.0% | |
| GGTAACATGTCTTCGATTAG+AGG | - | chr4.1:24243507-24243526 | None:intergenic | 40.0% | |
| GTGGTAATAGGACTTGGAAT+GGG | + | chr4.1:24243273-24243292 | MS.gene067575:CDS | 40.0% | |
| GTGGTCACCATATTCATCAT+GGG | + | chr4.1:24242876-24242895 | MS.gene067575:CDS | 40.0% | |
| TTGCTTAATGCATCATCTGC+TGG | + | chr4.1:24243740-24243759 | MS.gene067575:CDS | 40.0% | |
| !! | TAGAGGAATCGGTGTTGAAT+AGG | - | chr4.1:24243490-24243509 | None:intergenic | 40.0% |
| ACGCGATAACGTAGAAGTTG+TGG | - | chr4.1:24242926-24242945 | None:intergenic | 45.0% | |
| ACTTCTACGTTATCGCGTAG+TGG | + | chr4.1:24242928-24242947 | MS.gene067575:CDS | 45.0% | |
| ATAGCCACAAGTCCCGAAAA+GGG | - | chr4.1:24242713-24242732 | None:intergenic | 45.0% | |
| CACAACATCTCGTACGAATC+AGG | - | chr4.1:24242653-24242672 | None:intergenic | 45.0% | |
| CACACTCACTCACAGTATCA+TGG | - | chr4.1:24243201-24243220 | None:intergenic | 45.0% | |
| CTGGTATTATTCTTGGGACC+GGG | + | chr4.1:24242612-24242631 | MS.gene067575:CDS | 45.0% | |
| GATTGGTGTGTGTTTACCCT+TGG | + | chr4.1:24242523-24242542 | MS.gene067575:CDS | 45.0% | |
| GCTGGTATTATTCTTGGGAC+CGG | + | chr4.1:24242611-24242630 | MS.gene067575:CDS | 45.0% | |
| GGTGGAGATGATCAAGAGAT+TGG | + | chr4.1:24242827-24242846 | MS.gene067575:CDS | 45.0% | |
| GGTGGTCACCATATTCATCA+TGG | + | chr4.1:24242875-24242894 | MS.gene067575:CDS | 45.0% | |
| GTTGTGATTCCAGAGAGCAA+TGG | + | chr4.1:24242806-24242825 | MS.gene067575:CDS | 45.0% | |
| TCGCGGCTGGTATTATTCTT+GGG | + | chr4.1:24242606-24242625 | MS.gene067575:CDS | 45.0% | |
| TTCGCGGCTGGTATTATTCT+TGG | + | chr4.1:24242605-24242624 | MS.gene067575:CDS | 45.0% | |
| ! | ATGTTTGAAGGCATGGGTCT+TGG | + | chr4.1:24243354-24243373 | MS.gene067575:CDS | 45.0% |
| ! | CTGATTCGTACGAGATGTTG+TGG | + | chr4.1:24242651-24242670 | MS.gene067575:CDS | 45.0% |
| ACGTTATCGCGTAGTGGTCA+TGG | + | chr4.1:24242934-24242953 | MS.gene067575:CDS | 50.0% | |
| ACTTGTGGCTATGTTCTCCG+CGG | + | chr4.1:24242721-24242740 | MS.gene067575:CDS | 50.0% | |
| ATCGTGAAATGTTTCGCGGC+TGG | + | chr4.1:24242593-24242612 | MS.gene067575:CDS | 50.0% | |
| CATAGCCACAAGTCCCGAAA+AGG | - | chr4.1:24242714-24242733 | None:intergenic | 50.0% | |
| CCAACGGTGATTAGTGCTAC+TGG | - | chr4.1:24243719-24243738 | None:intergenic | 50.0% | |
| CCAGTAGCACTAATCACCGT+TGG | + | chr4.1:24243716-24243735 | MS.gene067575:CDS | 50.0% | |
| GACCATCATTGTGATCACCG+CGG | - | chr4.1:24242741-24242760 | None:intergenic | 50.0% | |
| GTGATTCCAGAGAGCAATGG+TGG | + | chr4.1:24242809-24242828 | MS.gene067575:CDS | 50.0% | |
| TCATCTCCACCATTGCTCTC+TGG | - | chr4.1:24242818-24242837 | None:intergenic | 50.0% | |
| TCTCCTTCTGGGCTTAAAGC+CGG | - | chr4.1:24242563-24242582 | None:intergenic | 50.0% | |
| TGCTGGTGGAATGTCTCTCA+TGG | + | chr4.1:24243874-24243893 | MS.gene067575:CDS | 50.0% | |
| ! | AGGGAGTACATGCATGAACC+CGG | - | chr4.1:24242633-24242652 | None:intergenic | 50.0% |
| ! | ATGGCGCGAGTTTCCCTTTT+CGG | + | chr4.1:24242697-24242716 | MS.gene067575:CDS | 50.0% |
| ! | GTAGCAGTATTCCTTGGTGC+TGG | + | chr4.1:24243857-24243876 | MS.gene067575:CDS | 50.0% |
| ! | TTTGAAGGCATGGGTCTTGG+TGG | + | chr4.1:24243357-24243376 | MS.gene067575:CDS | 50.0% |
| !! | GTTTCCCTTTTCGGGACTTG+TGG | + | chr4.1:24242706-24242725 | MS.gene067575:CDS | 50.0% |
| CTCCGCGGTGATCACAATGA+TGG | + | chr4.1:24242736-24242755 | MS.gene067575:CDS | 55.0% | |
| CTCCTTCTGGGCTTAAAGCC+GGG | - | chr4.1:24242562-24242581 | None:intergenic | 55.0% | |
| CTTGGCGACACGTTCAATCC+CGG | + | chr4.1:24242541-24242560 | MS.gene067575:CDS | 55.0% | |
| GAAAAGGGAAACTCGCGCCA+TGG | - | chr4.1:24242698-24242717 | None:intergenic | 55.0% | |
| GAGACATTCCACCAGCACCA+AGG | - | chr4.1:24243871-24243890 | None:intergenic | 55.0% | |
| GGGATTGAACGTGTCGCCAA+GGG | - | chr4.1:24242542-24242561 | None:intergenic | 55.0% | |
| ! | TCTTGGTGGCTGCATTCTCC+AGG | + | chr4.1:24243371-24243390 | MS.gene067575:CDS | 55.0% |
| ! | TGGCGCGAGTTTCCCTTTTC+GGG | + | chr4.1:24242698-24242717 | MS.gene067575:CDS | 55.0% |
| !! | ATCCCGGCTTTAAGCCCAGA+AGG | + | chr4.1:24242557-24242576 | MS.gene067575:CDS | 55.0% |
| !! | GCAGTATTCCTTGGTGCTGG+TGG | + | chr4.1:24243860-24243879 | MS.gene067575:CDS | 55.0% |
| CGGGATTGAACGTGTCGCCA+AGG | - | chr4.1:24242543-24242562 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24242347 | 24243910 | 24242347 | ID=MS.gene067575 |
| chr4.1 | mRNA | 24242347 | 24243910 | 24242347 | ID=MS.gene067575.t1;Parent=MS.gene067575 |
| chr4.1 | exon | 24242347 | 24242955 | 24242347 | ID=MS.gene067575.t1.exon1;Parent=MS.gene067575.t1 |
| chr4.1 | CDS | 24242347 | 24242955 | 24242347 | ID=cds.MS.gene067575.t1;Parent=MS.gene067575.t1 |
| chr4.1 | exon | 24243243 | 24243392 | 24243243 | ID=MS.gene067575.t1.exon2;Parent=MS.gene067575.t1 |
| chr4.1 | CDS | 24243243 | 24243392 | 24243243 | ID=cds.MS.gene067575.t1;Parent=MS.gene067575.t1 |
| chr4.1 | exon | 24243605 | 24243910 | 24243605 | ID=MS.gene067575.t1.exon3;Parent=MS.gene067575.t1 |
| chr4.1 | CDS | 24243605 | 24243910 | 24243605 | ID=cds.MS.gene067575.t1;Parent=MS.gene067575.t1 |
| Gene Sequence |
| Protein sequence |
