AlfalfaGEDB | MS.gene067575

M. sativa cultivar XinJiangDaYe / MS.gene067575

KEGG: K14709
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0016021 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0034220 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0110165
PFAM: PF02535.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067575.t1	AQQ72605.1	96.6	355	6	2	1	354	1	350	8.50E-184	652.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067575.t1	Q8W245	59.9	367	131	4	1	354	1	364	2.4e-110	400.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067575.t1	A0A1S5XVC2	96.6	355	6	2	1	354	1	350	6.1e-184	652.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054706	MS.gene067575	0.810227	1.28E-50	-1.69E-46
MS.gene054742	MS.gene067575	0.82062	6.23E-53	-1.69E-46
MS.gene056330	MS.gene067575	0.82185	3.24E-53	-1.69E-46
MS.gene056920	MS.gene067575	0.809669	1.69E-50	-1.69E-46
MS.gene059402	MS.gene067575	0.810398	1.18E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene067575	MS.gene009810	PPI
MS.gene067575	MS.gene54167	PPI
MS.gene067575	MS.gene50197	PPI
MS.gene067575	MS.gene56999	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067575.t1	MTR_4g083570	96.620	355	6	2	1	354	1	350	0.0	689
MS.gene067575.t1	MTR_8g105030	55.952	336	146	2	13	348	14	347	1.59e-127	371
MS.gene067575.t1	MTR_2g064310	48.169	355	182	1	2	354	4	358	6.22e-115	338
MS.gene067575.t1	MTR_3g082050	52.260	354	147	6	10	354	9	349	8.25e-111	327
MS.gene067575.t1	MTR_3g081640	48.774	367	169	5	1	354	1	361	2.37e-110	326
MS.gene067575.t1	MTR_3g082050	54.294	326	131	5	38	354	56	372	2.04e-109	324
MS.gene067575.t1	MTR_3g082050	54.294	326	131	5	38	354	61	377	2.80e-109	324
MS.gene067575.t1	MTR_3g081580	50.430	349	164	4	14	354	11	358	1.06e-105	314
MS.gene067575.t1	MTR_3g081690	51.988	327	135	6	10	327	9	322	2.80e-100	300
MS.gene067575.t1	MTR_3g081690	54.181	299	119	5	38	327	56	345	6.02e-99	297

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067575.t1	AT1G31260	63.905	338	115	4	23	354	28	364	7.96e-152	432
MS.gene067575.t1	AT4G19690	59.155	355	129	3	4	354	5	347	4.54e-146	417
MS.gene067575.t1	AT4G19680	55.966	352	143	4	9	354	5	350	5.56e-134	386
MS.gene067575.t1	AT2G04032	51.507	365	166	4	1	354	1	365	2.66e-127	370
MS.gene067575.t1	AT1G05300	49.405	336	158	5	27	354	29	360	1.17e-103	309
MS.gene067575.t1	AT2G32270	47.401	327	150	3	28	354	35	339	9.28e-100	298
MS.gene067575.t1	AT3G12750	46.499	357	178	6	3	354	7	355	9.93e-99	296
MS.gene067575.t1	AT5G62160	43.855	358	189	6	3	354	4	355	1.84e-92	280
MS.gene067575.t1	AT4G19680	54.941	253	102	4	9	255	5	251	3.11e-90	271
MS.gene067575.t1	AT1G10970	41.096	365	176	2	29	354	10	374	1.33e-88	271

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Find 81 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAGGTATTAGAACT+TGG	0.513674	4.1:+24243234	MS.gene067575:intron
AAACATTTGATGGAAGCACA+TGG	0.651723	4.1:-24243337	None:intergenic
AATAATACGTGCTCAATAAA+AGG	0.315250	4.1:+24243303	MS.gene067575:CDS
AATATTGGACATTCACATGG+TGG	0.690269	4.1:+24242857	MS.gene067575:CDS
AATGTCTCTCATGGCTAAAT+GGG	0.469779	4.1:+24243883	MS.gene067575:CDS
ACAACATCTCGTACGAATCA+GGG	0.576077	4.1:-24242649	None:intergenic
ACACCTCTTGGAATTGCAAT+AGG	0.413916	4.1:+24243659	MS.gene067575:CDS
ACGCGATAACGTAGAAGTTG+TGG	0.620330	4.1:-24242923	None:intergenic
ACGTTATCGCGTAGTGGTCA+TGG	0.509828	4.1:+24242934	MS.gene067575:CDS
ACTAGTTATTATAGTAAGAA+GGG	0.546690	4.1:+24242773	MS.gene067575:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGCTAAGATTGAGAATA+TGG	-	chr4.1:24242498-24242517	None:intergenic	30.0%
ATTACCTTCAATTCATCGAA+GGG	+	chr4.1:24243153-24243172	MS.gene067575:intron	30.0%
ATTATGAAAAGATCTCCTTC+TGG	-	chr4.1:24242575-24242594	None:intergenic	30.0%
GTTAATATTGGACATTCACA+TGG	+	chr4.1:24242854-24242873	MS.gene067575:CDS	30.0%
GTTCTTAAAGAATGCAATGT+TGG	+	chr4.1:24243616-24243635	MS.gene067575:CDS	30.0%
TACCAAACGTATTACTAACA+CGG	-	chr4.1:24243529-24243548	None:intergenic	30.0%
TTATGAAAAGATCTCCTTCT+GGG	-	chr4.1:24242574-24242593	None:intergenic	30.0%
AATATTGGACATTCACATGG+TGG	+	chr4.1:24242857-24242876	MS.gene067575:CDS	35.0%
AATGTCTCTCATGGCTAAAT+GGG	+	chr4.1:24243883-24243902	MS.gene067575:CDS	35.0%
AATTCATCGAAGGGTAATGT+AGG	+	chr4.1:24243162-24243181	MS.gene067575:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	24242347	24243910	24242347	ID=MS.gene067575
chr4.1	mRNA	24242347	24243910	24242347	ID=MS.gene067575.t1;Parent=MS.gene067575
chr4.1	exon	24242347	24242955	24242347	ID=MS.gene067575.t1.exon1;Parent=MS.gene067575.t1
chr4.1	CDS	24242347	24242955	24242347	ID=cds.MS.gene067575.t1;Parent=MS.gene067575.t1
chr4.1	exon	24243243	24243392	24243243	ID=MS.gene067575.t1.exon2;Parent=MS.gene067575.t1
chr4.1	CDS	24243243	24243392	24243243	ID=cds.MS.gene067575.t1;Parent=MS.gene067575.t1
chr4.1	exon	24243605	24243910	24243605	ID=MS.gene067575.t1.exon3;Parent=MS.gene067575.t1
chr4.1	CDS	24243605	24243910	24243605	ID=cds.MS.gene067575.t1;Parent=MS.gene067575.t1

Gene Sequence

>MS.gene067575

ATGGCTTATTCAGTAACTATACACAAAGCAATCTTCATTGTTTTCATCTTAATCACTTTTTTAACATCACAAGCACTAGCTGATTGTGAAAGTGAATCCACAAACAGTTGCAACAACAAAGAAAAAGCTCAGCCTCTAAAACTCATAGCCATATTCTCAATCTTAGCAACTAGTGTGATTGGTGTGTGTTTACCCTTGGCGACACGTTCAATCCCGGCTTTAAGCCCAGAAGGAGATCTTTTCATAATCGTGAAATGTTTCGCGGCTGGTATTATTCTTGGGACCGGGTTCATGCATGTACTCCCTGATTCGTACGAGATGTTGTGGAGTGATTGTTTGGATGAGAAACCATGGCGCGAGTTTCCCTTTTCGGGACTTGTGGCTATGTTCTCCGCGGTGATCACAATGATGGTCGATTCTATAGCTACTAGTTATTATAGTAAGAAGGGTAAGAGTGGAGTTGTGATTCCAGAGAGCAATGGTGGAGATGATCAAGAGATTGGTGATGTTAATATTGGACATTCACATGGTGGTCACCATATTCATCATGGGTTCAAGACAGATGAAAGTGACGAGCCACAACTTCTACGTTATCGCGTAGTGGTCATGGTATAATATATATACTTCTTCTATATGATATTAATTTTGAATGCAAAATAATTTGTTAAAAAATATAATATATGTATGCTTTCAATAATGATCAAATCAAACATGTTCAATTAGAAGAAGCTGAAATAAGGACGGAAAATATAAAACTTGCGACCAAATTTAATGTCTCTAACATTTATCAACGAAATTAAAGATGGATTACCTTCAATTCATCGAAGGGTAATGTAGGTCTCACCTTACTACCATGATACTGTGAGTGAGTGTGCTAATTTGATATTAAAATACAGGTATTAGAACTTGGAATTGTAGTTCATTCAGTGGTAATAGGACTTGGAATGGGAGCCTCCAATAATACGTGCTCAATAAAAGGTCTTATAGCAGCCATGTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGTGGCTGCATTCTCCAGGTAATTTGATTCAATATTTTTACTCCATATATATTCAATTAATTAACTTTATTAATTAAATTACTTTATTGTGTAATAATATTGAGAAAATTAACCTATTCAACACCGATTCCTCTAATCGAAGACATGTTACCCGTGTTAGTAATACGTTTGGTATTTTATTTATGTGTGTTAATAATTTATAGAAATTAACACTTCAATCTTTATAACAGGCAAAGTACAAGTTCTTAAAGAATGCAATGTTGGTATTCTTCTTCTCAATTACAACACCTCTTGGAATTGCAATAGGACTTGCCATGTCAACGAGTTACAAAGAGAATAGTCCAGTAGCACTAATCACCGTTGGATTGCTTAATGCATCATCTGCTGGTCTTTTAATCTACATGGCTTTGGTTGACTTATTAGCTGCTGATTTCATGAGTAAAAGGATGCAGGGTAGTATTAAGCTTCAATTAAAATCTTATGTAGCAGTATTCCTTGGTGCTGGTGGAATGTCTCTCATGGCTAAATGGGCTTAA

Protein sequence

>MS.gene067575.t1

MAYSVTIHKAIFIVFILITFLTSQALADCESESTNSCNNKEKAQPLKLIAIFSILATSVIGVCLPLATRSIPALSPEGDLFIIVKCFAAGIILGTGFMHVLPDSYEMLWSDCLDEKPWREFPFSGLVAMFSAVITMMVDSIATSYYSKKGKSGVVIPESNGGDDQEIGDVNIGHSHGGHHIHHGFKTDESDEPQLLRYRVVVMVLELGIVVHSVVIGLGMGASNNTCSIKGLIAAMCFHQMFEGMGLGGCILQAKYKFLKNAMLVFFFSITTPLGIAIGLAMSTSYKENSPVALITVGLLNASSAGLLIYMALVDLLAADFMSKRMQGSIKLQLKSYVAVFLGAGGMSLMAKWA