Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54167.t1 | XP_003615761.1 | 97.5 | 318 | 8 | 0 | 1 | 318 | 1 | 318 | 1.10E-166 | 595.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54167.t1 | O64738 | 68.1 | 329 | 84 | 3 | 11 | 318 | 13 | 341 | 5.6e-119 | 428.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54167.t1 | G7K740 | 97.5 | 318 | 8 | 0 | 1 | 318 | 1 | 318 | 8.0e-167 | 595.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69772 | MS.gene54167 | PPI |
| MS.gene54167 | MS.gene70499 | PPI |
| MS.gene066193 | MS.gene54167 | PPI |
| MS.gene82418 | MS.gene54167 | PPI |
| MS.gene56439 | MS.gene54167 | PPI |
| MS.gene25738 | MS.gene54167 | PPI |
| MS.gene70495 | MS.gene54167 | PPI |
| MS.gene067575 | MS.gene54167 | PPI |
| MS.gene54167 | MS.gene69774 | PPI |
| MS.gene90024 | MS.gene54167 | PPI |
| MS.gene044303 | MS.gene54167 | PPI |
| MS.gene038972 | MS.gene54167 | PPI |
| MS.gene071273 | MS.gene54167 | PPI |
| MS.gene70500 | MS.gene54167 | PPI |
| MS.gene000434 | MS.gene54167 | PPI |
| MS.gene98090 | MS.gene54167 | PPI |
| MS.gene54167 | MS.gene73898 | PPI |
| MS.gene62494 | MS.gene54167 | PPI |
| MS.gene040467 | MS.gene54167 | PPI |
| MS.gene044300 | MS.gene54167 | PPI |
| MS.gene25737 | MS.gene54167 | PPI |
| MS.gene071270 | MS.gene54167 | PPI |
| MS.gene045723 | MS.gene54167 | PPI |
| MS.gene54167 | MS.gene69773 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54167.t1 | MTR_5g071990 | 97.484 | 318 | 8 | 0 | 1 | 318 | 1 | 318 | 0.0 | 631 |
| MS.gene54167.t1 | MTR_2g064310 | 40.356 | 337 | 169 | 7 | 5 | 318 | 31 | 358 | 3.13e-78 | 243 |
| MS.gene54167.t1 | MTR_4g083570 | 41.358 | 324 | 164 | 7 | 13 | 318 | 35 | 350 | 6.83e-77 | 239 |
| MS.gene54167.t1 | MTR_3g081640 | 39.595 | 346 | 173 | 7 | 1 | 318 | 24 | 361 | 2.92e-74 | 233 |
| MS.gene54167.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 33 | 349 | 6.20e-74 | 231 |
| MS.gene54167.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 56 | 372 | 8.61e-74 | 232 |
| MS.gene54167.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 61 | 377 | 9.30e-74 | 232 |
| MS.gene54167.t1 | MTR_3g081580 | 40.549 | 328 | 158 | 8 | 1 | 304 | 24 | 338 | 6.43e-70 | 221 |
| MS.gene54167.t1 | MTR_8g105030 | 39.879 | 331 | 171 | 8 | 3 | 312 | 24 | 347 | 1.32e-69 | 222 |
| MS.gene54167.t1 | MTR_3g081690 | 42.105 | 304 | 142 | 7 | 16 | 298 | 33 | 323 | 6.37e-68 | 216 |
| MS.gene54167.t1 | MTR_3g081690 | 42.105 | 304 | 142 | 7 | 16 | 298 | 56 | 346 | 6.79e-68 | 216 |
| MS.gene54167.t1 | MTR_6g007687 | 39.877 | 326 | 179 | 7 | 3 | 316 | 25 | 345 | 2.67e-66 | 212 |
| MS.gene54167.t1 | MTR_1g016120 | 38.547 | 358 | 161 | 9 | 15 | 318 | 22 | 374 | 5.43e-66 | 212 |
| MS.gene54167.t1 | MTR_3g104400 | 37.500 | 360 | 161 | 8 | 15 | 318 | 14 | 365 | 5.31e-63 | 204 |
| MS.gene54167.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 56 | 188 | 7.67e-46 | 154 |
| MS.gene54167.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 100 | 232 | 4.87e-45 | 154 |
| MS.gene54167.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 78 | 210 | 7.44e-45 | 152 |
| MS.gene54167.t1 | MTR_3g058630 | 24.281 | 313 | 198 | 9 | 25 | 317 | 55 | 348 | 1.11e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54167.t1 | AT2G30080 | 68.693 | 329 | 82 | 3 | 11 | 318 | 13 | 341 | 6.87e-161 | 452 |
| MS.gene54167.t1 | AT2G04032 | 39.053 | 338 | 177 | 10 | 3 | 318 | 35 | 365 | 1.20e-71 | 226 |
| MS.gene54167.t1 | AT1G31260 | 38.040 | 347 | 174 | 7 | 3 | 318 | 28 | 364 | 2.16e-71 | 225 |
| MS.gene54167.t1 | AT2G32270 | 41.801 | 311 | 173 | 7 | 8 | 318 | 37 | 339 | 3.36e-68 | 216 |
| MS.gene54167.t1 | AT4G19690 | 38.415 | 328 | 182 | 7 | 3 | 318 | 28 | 347 | 9.58e-68 | 216 |
| MS.gene54167.t1 | AT1G05300 | 39.883 | 341 | 171 | 10 | 3 | 318 | 29 | 360 | 1.21e-67 | 216 |
| MS.gene54167.t1 | AT3G12750 | 38.739 | 333 | 183 | 6 | 2 | 318 | 28 | 355 | 3.76e-67 | 214 |
| MS.gene54167.t1 | AT4G19680 | 37.117 | 326 | 185 | 7 | 8 | 318 | 30 | 350 | 2.42e-66 | 212 |
| MS.gene54167.t1 | AT5G62160 | 36.667 | 330 | 179 | 4 | 10 | 318 | 35 | 355 | 2.14e-64 | 207 |
| MS.gene54167.t1 | AT1G10970 | 36.412 | 379 | 175 | 10 | 1 | 318 | 1 | 374 | 1.25e-62 | 203 |
| MS.gene54167.t1 | AT1G10970 | 36.412 | 379 | 175 | 10 | 1 | 318 | 1 | 374 | 1.25e-62 | 203 |
| MS.gene54167.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 258 | 415 | 2.61e-45 | 159 |
| MS.gene54167.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 27 | 164 | 6.01e-15 | 75.5 |
| MS.gene54167.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 268 | 425 | 3.06e-45 | 159 |
| MS.gene54167.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 37 | 174 | 6.57e-15 | 75.5 |
| MS.gene54167.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 186 | 344 | 8.30e-45 | 156 |
| MS.gene54167.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 233 | 391 | 2.42e-44 | 156 |
| MS.gene54167.t1 | AT4G33020 | 34.646 | 127 | 78 | 2 | 4 | 130 | 23 | 144 | 1.93e-12 | 67.8 |
| MS.gene54167.t1 | AT4G19680 | 32.883 | 222 | 132 | 5 | 8 | 214 | 30 | 249 | 5.93e-39 | 138 |
| MS.gene54167.t1 | AT1G05300 | 35.443 | 237 | 122 | 8 | 3 | 214 | 29 | 259 | 1.42e-31 | 119 |
| MS.gene54167.t1 | AT4G19690 | 34.677 | 124 | 77 | 3 | 3 | 124 | 28 | 149 | 5.01e-17 | 79.0 |
| MS.gene54167.t1 | AT1G60960 | 35.252 | 139 | 85 | 3 | 1 | 136 | 37 | 173 | 3.27e-15 | 75.1 |
| MS.gene54167.t1 | AT1G55910 | 25.249 | 301 | 194 | 13 | 24 | 317 | 48 | 324 | 5.41e-15 | 74.7 |
Find 74 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGTCTATTCTTGCTCTT+TGG | 0.167696 | 5.4:+61884675 | MS.gene54167:CDS |
| CCTTCAATTATTAAGGCATT+AGG | 0.237081 | 5.4:-61884506 | None:intergenic |
| CTCAAAATGTTTGTACTATA+AGG | 0.241674 | 5.4:+61883255 | MS.gene54167:CDS |
| ATATTTCATTCAGTTATAAT+TGG | 0.259940 | 5.4:+61883215 | MS.gene54167:CDS |
| AGTTATAATTGGTGTGACTA+TGG | 0.261183 | 5.4:+61883226 | MS.gene54167:CDS |
| TTGCAGGCAGGATTTAATTA+TGG | 0.276307 | 5.4:+61884383 | MS.gene54167:intron |
| TATGTCTATTCTTGCTCTTT+GGG | 0.278728 | 5.4:+61884676 | MS.gene54167:CDS |
| TTACTAGGTTCAATTTCTTC+TGG | 0.279901 | 5.4:+61884530 | MS.gene54167:CDS |
| TAGTAACCCTTCAATTATTA+AGG | 0.283235 | 5.4:-61884513 | None:intergenic |
| AAGATTGGTTTCACAGGTAT+TGG | 0.310916 | 5.4:+61883181 | MS.gene54167:CDS |
| CTTCAATTATTAAGGCATTA+GGG | 0.325767 | 5.4:-61884505 | None:intergenic |
| GAGAAAGAGTTTGAGTTAGA+AGG | 0.347941 | 5.4:+61883110 | MS.gene54167:CDS |
| AAGGCCTTTAGTTGCTGCTT+TGG | 0.349354 | 5.4:+61883274 | MS.gene54167:CDS |
| GTTTCACAGGTATTGGAGAT+TGG | 0.361426 | 5.4:+61883188 | MS.gene54167:CDS |
| GCGAGTGCTGCGTACGCGTC+TGG | 0.365699 | 5.4:-61882945 | None:intergenic |
| GAAAGAAATCAGCTGCTATT+AGG | 0.366337 | 5.4:-61884580 | None:intergenic |
| CGCAATTCTCGCGCTCTTCG+TGG | 0.380681 | 5.4:+61883037 | MS.gene54167:CDS |
| TCCCTAAAATTATCCCCATT+GGG | 0.383656 | 5.4:-61884445 | None:intergenic |
| CCTAATGCCTTAATAATTGA+AGG | 0.388464 | 5.4:+61884506 | MS.gene54167:CDS |
| AATTAAATTGAAACAAAGAT+TGG | 0.400504 | 5.4:+61883166 | MS.gene54167:CDS |
| TTTGAAGGGATGGGTCTTGG+TGG | 0.410362 | 5.4:+61883311 | MS.gene54167:CDS |
| TTTCACAGGTATTGGAGATT+GGG | 0.410797 | 5.4:+61883189 | MS.gene54167:CDS |
| TTAATAATTGAAGGGTTACT+AGG | 0.416508 | 5.4:+61884515 | MS.gene54167:CDS |
| GGTGAAGGAGAGTGTGAAAG+AGG | 0.438001 | 5.4:+61883134 | MS.gene54167:CDS |
| ATCCCTAAAATTATCCCCAT+TGG | 0.445704 | 5.4:-61884446 | None:intergenic |
| TTCTGGAATTCTTATTTACA+TGG | 0.449132 | 5.4:+61884547 | MS.gene54167:CDS |
| ATGATATTATTCTCATTGAC+AGG | 0.454275 | 5.4:+61884467 | MS.gene54167:CDS |
| GTGAAGGAGAGTGTGAAAGA+GGG | 0.456968 | 5.4:+61883135 | MS.gene54167:CDS |
| AGAAGCAGAACCCATAGTTA+AGG | 0.473744 | 5.4:-61884654 | None:intergenic |
| CGTCTGGAAGGACGTGGACT+AGG | 0.475461 | 5.4:-61882929 | None:intergenic |
| TCTTGGTGGTTGTGTTGCTC+AGG | 0.475918 | 5.4:+61883325 | MS.gene54167:CDS |
| GAAAATCCTTCCAAGGATGA+TGG | 0.478728 | 5.4:-61882986 | None:intergenic |
| CGCGGCGCCGTCGCGGCATG+AGG | 0.483703 | 5.4:-61882742 | None:intergenic |
| GTTATAATTGGTGTGACTAT+GGG | 0.486976 | 5.4:+61883227 | MS.gene54167:CDS |
| CGCCGTCATACCGACGGCGC+TGG | 0.489341 | 5.4:-61882808 | None:intergenic |
| GCATGGGCAGTATGCGCCGG+TGG | 0.494256 | 5.4:+61883085 | MS.gene54167:CDS |
| AAAGAGTTTGAGTTAGAAGG+TGG | 0.499910 | 5.4:+61883113 | MS.gene54167:CDS |
| TTTGAGTTAGAAGGTGGTGA+AGG | 0.507250 | 5.4:+61883119 | MS.gene54167:CDS |
| GCAAGTTCTCACGTGGAGCA+TGG | 0.513448 | 5.4:+61883068 | MS.gene54167:CDS |
| TGAAGGAGAGTGTGAAAGAG+GGG | 0.514863 | 5.4:+61883136 | MS.gene54167:CDS |
| GTGATGCCGCGGCGCCGTCG+CGG | 0.525307 | 5.4:-61882749 | None:intergenic |
| ACGTGGCATCCCATCATCCT+TGG | 0.525646 | 5.4:+61882976 | MS.gene54167:CDS |
| CTCATGCCGCGACGGCGCCG+CGG | 0.528189 | 5.4:+61882743 | MS.gene54167:CDS |
| CAAGTTCTCACGTGGAGCAT+GGG | 0.529014 | 5.4:+61883069 | MS.gene54167:CDS |
| GAAACAAAGATTGGTTTCAC+AGG | 0.529892 | 5.4:+61883175 | MS.gene54167:CDS |
| ACTAATGCTCTGTCGTATAA+CGG | 0.530063 | 5.4:-61882864 | None:intergenic |
| AACCAGCGCCGTCGGTATGA+CGG | 0.531794 | 5.4:+61882806 | MS.gene54167:CDS |
| GTCTGGAAGGACGTGGACTA+GGG | 0.536595 | 5.4:-61882928 | None:intergenic |
| AAGACACGAGCTAAAAGTAC+TGG | 0.548503 | 5.4:-61882831 | None:intergenic |
| AAAATCCTTCCAAGGATGAT+GGG | 0.559057 | 5.4:-61882985 | None:intergenic |
| GTGCTGCGTACGCGTCTGGA+AGG | 0.560864 | 5.4:-61882941 | None:intergenic |
| AAAGCCAAAGCAGCAACTAA+AGG | 0.564655 | 5.4:-61883278 | None:intergenic |
| CTAATGCCTTAATAATTGAA+GGG | 0.571906 | 5.4:+61884507 | MS.gene54167:CDS |
| CATGGGCAGTATGCGCCGGT+GGG | 0.582078 | 5.4:+61883086 | MS.gene54167:CDS |
| TCAAACTCTTTCTCACCCAC+CGG | 0.587449 | 5.4:-61883101 | None:intergenic |
| ATATTCATAACCAGCGCCGT+CGG | 0.588809 | 5.4:+61882798 | MS.gene54167:CDS |
| GAGAGTTACTAGTCCAGCGA+AGG | 0.589902 | 5.4:-61883009 | None:intergenic |
| GGAGCATGGGCAGTATGCGC+CGG | 0.594436 | 5.4:+61883082 | MS.gene54167:CDS |
| GCGAAGGGAAAATCCTTCCA+AGG | 0.599351 | 5.4:-61882993 | None:intergenic |
| TACTGGCGCCGTCATACCGA+CGG | 0.603515 | 5.4:-61882814 | None:intergenic |
| GGCATCCCATCATCCTTGGA+AGG | 0.606184 | 5.4:+61882980 | MS.gene54167:CDS |
| CGTACGCGTCTGGAAGGACG+TGG | 0.609526 | 5.4:-61882935 | None:intergenic |
| CCCTAAAATTATCCCCATTG+GGG | 0.615298 | 5.4:-61884444 | None:intergenic |
| AGAGAAACCTCATGCCGCGA+CGG | 0.615693 | 5.4:+61882735 | MS.gene54167:CDS |
| CCTCGTAGCAAGTTCTCACG+TGG | 0.624783 | 5.4:+61883061 | MS.gene54167:CDS |
| GCTGGACTAGTAACTCTCAT+CGG | 0.629563 | 5.4:+61883014 | MS.gene54167:CDS |
| AGGATTTAATTATGGAACAG+TGG | 0.632568 | 5.4:+61884391 | MS.gene54167:CDS |
| GGTTATGAATATGACAAAGA+GGG | 0.632652 | 5.4:-61882787 | None:intergenic |
| TGGTTATGAATATGACAAAG+AGG | 0.637452 | 5.4:-61882788 | None:intergenic |
| AGAGTTACTAGTCCAGCGAA+GGG | 0.664193 | 5.4:-61883008 | None:intergenic |
| AGCACTCGCTGACTGCCACG+TGG | 0.689491 | 5.4:+61882959 | MS.gene54167:CDS |
| CCACGTGAGAACTTGCTACG+AGG | 0.705129 | 5.4:-61883061 | None:intergenic |
| AAGGATGATGGGATGCCACG+TGG | 0.717058 | 5.4:-61882974 | None:intergenic |
| TTTCAGTAACAACCCCAATG+GGG | 0.728298 | 5.4:+61884432 | MS.gene54167:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTTATAATTTAAA+AGG | - | chr5.4:61884326-61884345 | None:intergenic | 0.0% |
| !!! | TAAATTATAAATATTTTATA+TGG | + | chr5.4:61884328-61884347 | MS.gene54167:intron | 0.0% |
| !! | AAAATAATATAGTAATATTG+AGG | + | chr5.4:61884157-61884176 | MS.gene54167:intron | 10.0% |
| !! | TTAACAATAAAAAGATTTAA+TGG | + | chr5.4:61883839-61883858 | MS.gene54167:intron | 10.0% |
| !!! | TTTTTAAACAACTTTTTATA+TGG | + | chr5.4:61884065-61884084 | MS.gene54167:intron | 10.0% |
| !! | AAAATGGTCAAATATTATAA+TGG | + | chr5.4:61883865-61883884 | MS.gene54167:intron | 15.0% |
| !! | AAAGATTTAATGGTTTAAAA+TGG | + | chr5.4:61883849-61883868 | MS.gene54167:intron | 15.0% |
| !! | AATTAAATTGAAACAAAGAT+TGG | + | chr5.4:61883166-61883185 | MS.gene54167:CDS | 15.0% |
| !! | ATATTTCATTCAGTTATAAT+TGG | + | chr5.4:61883215-61883234 | MS.gene54167:CDS | 15.0% |
| !!! | AAATTTTCCTAAAAGAATTA+TGG | - | chr5.4:61883906-61883925 | None:intergenic | 15.0% |
| !!! | AATTTTCCTAAAAGAATTAT+GGG | - | chr5.4:61883905-61883924 | None:intergenic | 15.0% |
| !! | AAAAGTTGTTTAAAAACACA+TGG | - | chr5.4:61884061-61884080 | None:intergenic | 20.0% |
| !! | AATATAGTAATATTGAGGAT+TGG | + | chr5.4:61884162-61884181 | MS.gene54167:intron | 20.0% |
| !! | AGGATTTATGAAAGTTAAAA+AGG | + | chr5.4:61883416-61883435 | MS.gene54167:intron | 20.0% |
| !! | ATATAGTAATATTGAGGATT+GGG | + | chr5.4:61884163-61884182 | MS.gene54167:intron | 20.0% |
| !!! | CATATGCTATAATTTTAAGA+TGG | - | chr5.4:61884218-61884237 | None:intergenic | 20.0% |
| !!! | TTTTAAACAACTTCTTATGT+GGG | - | chr5.4:61883934-61883953 | None:intergenic | 20.0% |
| !!! | TTTTTAAACAACTTCTTATG+TGG | - | chr5.4:61883935-61883954 | None:intergenic | 20.0% |
| ! | AATGTCAAAATCGTATGATT+AGG | + | chr5.4:61884253-61884272 | MS.gene54167:intron | 25.0% |
| ! | ATCTTACCATTAATAATTGC+AGG | + | chr5.4:61884367-61884386 | MS.gene54167:intron | 25.0% |
| ! | ATGATATTATTCTCATTGAC+AGG | + | chr5.4:61884467-61884486 | MS.gene54167:CDS | 25.0% |
| ! | ATGATTAGGTTCACATATAA+TGG | + | chr5.4:61884267-61884286 | MS.gene54167:intron | 25.0% |
| ! | CTAATGCCTTAATAATTGAA+GGG | + | chr5.4:61884507-61884526 | MS.gene54167:CDS | 25.0% |
| ! | CTCAAAATGTTTGTACTATA+AGG | + | chr5.4:61883255-61883274 | MS.gene54167:CDS | 25.0% |
| ! | TAGTAACCCTTCAATTATTA+AGG | - | chr5.4:61884516-61884535 | None:intergenic | 25.0% |
| ! | TGATTAGGTTCACATATAAT+GGG | + | chr5.4:61884268-61884287 | MS.gene54167:intron | 25.0% |
| ! | TTAATAATTGAAGGGTTACT+AGG | + | chr5.4:61884515-61884534 | MS.gene54167:CDS | 25.0% |
| ! | TTCACTGCAGTTTATTATAT+GGG | + | chr5.4:61883808-61883827 | MS.gene54167:intron | 25.0% |
| ! | TTTCACTGCAGTTTATTATA+TGG | + | chr5.4:61883807-61883826 | MS.gene54167:intron | 25.0% |
| !! | CTTCAATTATTAAGGCATTA+GGG | - | chr5.4:61884508-61884527 | None:intergenic | 25.0% |
| !! | CTTTTCATCAGATTTTTGAA+GGG | + | chr5.4:61883297-61883316 | MS.gene54167:CDS | 25.0% |
| !! | TTAATAAAATGTTTTGCAGC+AGG | + | chr5.4:61882888-61882907 | MS.gene54167:CDS | 25.0% |
| !!! | TTCCTTATTGTTGATTTGTT+GGG | + | chr5.4:61883587-61883606 | MS.gene54167:intron | 25.0% |
| !!! | TTCTGGAATTCTTATTTACA+TGG | + | chr5.4:61884547-61884566 | MS.gene54167:CDS | 25.0% |
| !!! | TTTCCTTATTGTTGATTTGT+TGG | + | chr5.4:61883586-61883605 | MS.gene54167:intron | 25.0% |
| ACCATCTAAACCATTAGAAT+GGG | - | chr5.4:61884123-61884142 | None:intergenic | 30.0% | |
| AGGATTTAATTATGGAACAG+TGG | + | chr5.4:61884391-61884410 | MS.gene54167:CDS | 30.0% | |
| AGTATAATATATGCACGAGT+CGG | + | chr5.4:61883502-61883521 | MS.gene54167:intron | 30.0% | |
| AGTTATAATTGGTGTGACTA+TGG | + | chr5.4:61883226-61883245 | MS.gene54167:CDS | 30.0% | |
| ATACAAGTACATCTATTGAG+TGG | - | chr5.4:61883731-61883750 | None:intergenic | 30.0% | |
| ATCTAAACGTGTAATGATGT+TGG | + | chr5.4:61883547-61883566 | MS.gene54167:intron | 30.0% | |
| CCTAATGCCTTAATAATTGA+AGG | + | chr5.4:61884506-61884525 | MS.gene54167:CDS | 30.0% | |
| CTAAAAGAATTATGGGTGAA+AGG | - | chr5.4:61883898-61883917 | None:intergenic | 30.0% | |
| CTGCTCAATATTTATTAGAG+AGG | + | chr5.4:61883396-61883415 | MS.gene54167:intron | 30.0% | |
| GGTTATGAATATGACAAAGA+GGG | - | chr5.4:61882790-61882809 | None:intergenic | 30.0% | |
| GTTATAATTGGTGTGACTAT+GGG | + | chr5.4:61883227-61883246 | MS.gene54167:CDS | 30.0% | |
| TATGTCTATTCTTGCTCTTT+GGG | + | chr5.4:61884676-61884695 | MS.gene54167:CDS | 30.0% | |
| TGGTTATGAATATGACAAAG+AGG | - | chr5.4:61882791-61882810 | None:intergenic | 30.0% | |
| TGTCAAGAAAATGAAAGAGT+AGG | - | chr5.4:61883690-61883709 | None:intergenic | 30.0% | |
| TTACTAGGTTCAATTTCTTC+TGG | + | chr5.4:61884530-61884549 | MS.gene54167:CDS | 30.0% | |
| TTGTAGTTAACTATCGTTAG+AGG | - | chr5.4:61883977-61883996 | None:intergenic | 30.0% | |
| ! | ATATAATGGGACAACAAGAA+TGG | + | chr5.4:61884281-61884300 | MS.gene54167:intron | 30.0% |
| ! | CCTTCAATTATTAAGGCATT+AGG | - | chr5.4:61884509-61884528 | None:intergenic | 30.0% |
| ! | CTTTCACCCATAATTCTTTT+AGG | + | chr5.4:61883896-61883915 | MS.gene54167:intron | 30.0% |
| ! | GCTTTTCATCAGATTTTTGA+AGG | + | chr5.4:61883296-61883315 | MS.gene54167:CDS | 30.0% |
| ! | TCTTTTGTTGCCTTAACTAT+GGG | + | chr5.4:61884644-61884663 | MS.gene54167:CDS | 30.0% |
| ! | TTCTTTTGTTGCCTTAACTA+TGG | + | chr5.4:61884643-61884662 | MS.gene54167:CDS | 30.0% |
| !! | TCCTTATTGTTGATTTGTTG+GGG | + | chr5.4:61883588-61883607 | MS.gene54167:intron | 30.0% |
| AAAATCCTTCCAAGGATGAT+GGG | - | chr5.4:61882988-61883007 | None:intergenic | 35.0% | |
| AAACTGCAGTGAAATGACAT+TGG | - | chr5.4:61883801-61883820 | None:intergenic | 35.0% | |
| ACCCATTCTAATGGTTTAGA+TGG | + | chr5.4:61884119-61884138 | MS.gene54167:intron | 35.0% | |
| ACTAATGCTCTGTCGTATAA+CGG | - | chr5.4:61882867-61882886 | None:intergenic | 35.0% | |
| ATCCCTAAAATTATCCCCAT+TGG | - | chr5.4:61884449-61884468 | None:intergenic | 35.0% | |
| ATCCTGCCTGCAATTATTAA+TGG | - | chr5.4:61884376-61884395 | None:intergenic | 35.0% | |
| CTATGTCTATTCTTGCTCTT+TGG | + | chr5.4:61884675-61884694 | MS.gene54167:CDS | 35.0% | |
| GAAAGAAATCAGCTGCTATT+AGG | - | chr5.4:61884583-61884602 | None:intergenic | 35.0% | |
| GACCATCTAAACCATTAGAA+TGG | - | chr5.4:61884124-61884143 | None:intergenic | 35.0% | |
| TACCATTAATAATTGCAGGC+AGG | + | chr5.4:61884371-61884390 | MS.gene54167:intron | 35.0% | |
| TCCCCAACAAATCAACAATA+AGG | - | chr5.4:61883592-61883611 | None:intergenic | 35.0% | |
| TCCCTAAAATTATCCCCATT+GGG | - | chr5.4:61884448-61884467 | None:intergenic | 35.0% | |
| TTGCAGGCAGGATTTAATTA+TGG | + | chr5.4:61884383-61884402 | MS.gene54167:intron | 35.0% | |
| ! | AAACCATTAGAATGGGTTTG+TGG | - | chr5.4:61884116-61884135 | None:intergenic | 35.0% |
| ! | AAAGAGTTTGAGTTAGAAGG+TGG | + | chr5.4:61883113-61883132 | MS.gene54167:CDS | 35.0% |
| ! | AACCATTAGAATGGGTTTGT+GGG | - | chr5.4:61884115-61884134 | None:intergenic | 35.0% |
| ! | GAGAAAGAGTTTGAGTTAGA+AGG | + | chr5.4:61883110-61883129 | MS.gene54167:CDS | 35.0% |
| ! | TACATGACAGAACTCGATTT+TGG | + | chr5.4:61883659-61883678 | MS.gene54167:intron | 35.0% |
| ! | TTTTCAGTAACAACCCCAAT+GGG | + | chr5.4:61884431-61884450 | MS.gene54167:CDS | 35.0% |
| !! | AAGATTGGTTTCACAGGTAT+TGG | + | chr5.4:61883181-61883200 | MS.gene54167:CDS | 35.0% |
| !! | CATCAGATTTTTGAAGGGAT+GGG | + | chr5.4:61883302-61883321 | MS.gene54167:CDS | 35.0% |
| !! | GAAACAAAGATTGGTTTCAC+AGG | + | chr5.4:61883175-61883194 | MS.gene54167:CDS | 35.0% |
| !! | TCATCAGATTTTTGAAGGGA+TGG | + | chr5.4:61883301-61883320 | MS.gene54167:CDS | 35.0% |
| !! | TTTCACAGGTATTGGAGATT+GGG | + | chr5.4:61883189-61883208 | MS.gene54167:CDS | 35.0% |
| !!! | AAAGAAGCTTTTTTCAAGCG+TGG | - | chr5.4:61884629-61884648 | None:intergenic | 35.0% |
| !!! | TATTTTTAGATGTGATGCCG+CGG | - | chr5.4:61882763-61882782 | None:intergenic | 35.0% |
| AAAGCCAAAGCAGCAACTAA+AGG | - | chr5.4:61883281-61883300 | None:intergenic | 40.0% | |
| AGAAGCAGAACCCATAGTTA+AGG | - | chr5.4:61884657-61884676 | None:intergenic | 40.0% | |
| CCCTAAAATTATCCCCATTG+GGG | - | chr5.4:61884447-61884466 | None:intergenic | 40.0% | |
| GAAAATCCTTCCAAGGATGA+TGG | - | chr5.4:61882989-61883008 | None:intergenic | 40.0% | |
| TTTCAGTAACAACCCCAATG+GGG | + | chr5.4:61884432-61884451 | MS.gene54167:CDS | 40.0% | |
| ! | AAGACACGAGCTAAAAGTAC+TGG | - | chr5.4:61882834-61882853 | None:intergenic | 40.0% |
| ! | ACCCCAATGGGGATAATTTT+AGG | + | chr5.4:61884443-61884462 | MS.gene54167:CDS | 40.0% |
| ! | CCCCAATGGGGATAATTTTA+GGG | + | chr5.4:61884444-61884463 | MS.gene54167:CDS | 40.0% |
| ! | GTTTTCAGTAACAACCCCAA+TGG | + | chr5.4:61884430-61884449 | MS.gene54167:CDS | 40.0% |
| ! | TTTGAGTTAGAAGGTGGTGA+AGG | + | chr5.4:61883119-61883138 | MS.gene54167:CDS | 40.0% |
| !! | ATTTTTGAAGGGATGGGTCT+TGG | + | chr5.4:61883308-61883327 | MS.gene54167:CDS | 40.0% |
| !! | GTTTCACAGGTATTGGAGAT+TGG | + | chr5.4:61883188-61883207 | MS.gene54167:CDS | 40.0% |
| !! | TTGTTGATTTGTTGGGGACT+TGG | + | chr5.4:61883594-61883613 | MS.gene54167:intron | 40.0% |
| AGAGTTACTAGTCCAGCGAA+GGG | - | chr5.4:61883011-61883030 | None:intergenic | 45.0% | |
| ATATTCATAACCAGCGCCGT+CGG | + | chr5.4:61882798-61882817 | MS.gene54167:CDS | 45.0% | |
| GTCCCACAAACCCATTCTAA+TGG | + | chr5.4:61884110-61884129 | MS.gene54167:intron | 45.0% | |
| TCAAACTCTTTCTCACCCAC+CGG | - | chr5.4:61883104-61883123 | None:intergenic | 45.0% | |
| ! | AAGGCCTTTAGTTGCTGCTT+TGG | + | chr5.4:61883274-61883293 | MS.gene54167:CDS | 45.0% |
| ! | GTGAAGGAGAGTGTGAAAGA+GGG | + | chr5.4:61883135-61883154 | MS.gene54167:CDS | 45.0% |
| ! | TGAAGGAGAGTGTGAAAGAG+GGG | + | chr5.4:61883136-61883155 | MS.gene54167:CDS | 45.0% |
| !! | GCTGGACTAGTAACTCTCAT+CGG | + | chr5.4:61883014-61883033 | MS.gene54167:CDS | 45.0% |
| !!! | CTTTTAGCTCGTGTCTTTCG+AGG | + | chr5.4:61882837-61882856 | MS.gene54167:CDS | 45.0% |
| ATGCACGAGTCGGAGTTCAA+AGG | + | chr5.4:61883512-61883531 | MS.gene54167:intron | 50.0% | |
| CAAGTTCTCACGTGGAGCAT+GGG | + | chr5.4:61883069-61883088 | MS.gene54167:CDS | 50.0% | |
| GAGAGTTACTAGTCCAGCGA+AGG | - | chr5.4:61883012-61883031 | None:intergenic | 50.0% | |
| GCGAAGGGAAAATCCTTCCA+AGG | - | chr5.4:61882996-61883015 | None:intergenic | 50.0% | |
| TTTGAAGGGATGGGTCTTGG+TGG | + | chr5.4:61883311-61883330 | MS.gene54167:CDS | 50.0% | |
| ! | GGTGAAGGAGAGTGTGAAAG+AGG | + | chr5.4:61883134-61883153 | MS.gene54167:CDS | 50.0% |
| ! | TCTTGGTGGTTGTGTTGCTC+AGG | + | chr5.4:61883325-61883344 | MS.gene54167:CDS | 50.0% |
| ! | TGGAAGGATTTTCCCTTCGC+TGG | + | chr5.4:61882996-61883015 | MS.gene54167:CDS | 50.0% |
| ACGTGGCATCCCATCATCCT+TGG | + | chr5.4:61882976-61882995 | MS.gene54167:CDS | 55.0% | |
| AGAGAAACCTCATGCCGCGA+CGG | + | chr5.4:61882735-61882754 | MS.gene54167:CDS | 55.0% | |
| CCTCGTAGCAAGTTCTCACG+TGG | + | chr5.4:61883061-61883080 | MS.gene54167:CDS | 55.0% | |
| GCAAGTTCTCACGTGGAGCA+TGG | + | chr5.4:61883068-61883087 | MS.gene54167:CDS | 55.0% | |
| GGCATCCCATCATCCTTGGA+AGG | + | chr5.4:61882980-61882999 | MS.gene54167:CDS | 55.0% | |
| ! | GTCTGGAAGGACGTGGACTA+GGG | - | chr5.4:61882931-61882950 | None:intergenic | 55.0% |
| !! | AAGGATGATGGGATGCCACG+TGG | - | chr5.4:61882977-61882996 | None:intergenic | 55.0% |
| !! | CCACGTGAGAACTTGCTACG+AGG | - | chr5.4:61883064-61883083 | None:intergenic | 55.0% |
| AACCAGCGCCGTCGGTATGA+CGG | + | chr5.4:61882806-61882825 | MS.gene54167:CDS | 60.0% | |
| CGCAATTCTCGCGCTCTTCG+TGG | + | chr5.4:61883037-61883056 | MS.gene54167:CDS | 60.0% | |
| CGTCTGGAAGGACGTGGACT+AGG | - | chr5.4:61882932-61882951 | None:intergenic | 60.0% | |
| TACTGGCGCCGTCATACCGA+CGG | - | chr5.4:61882817-61882836 | None:intergenic | 60.0% | |
| CGTACGCGTCTGGAAGGACG+TGG | - | chr5.4:61882938-61882957 | None:intergenic | 65.0% | |
| GGAGCATGGGCAGTATGCGC+CGG | + | chr5.4:61883082-61883101 | MS.gene54167:CDS | 65.0% | |
| GTGCTGCGTACGCGTCTGGA+AGG | - | chr5.4:61882944-61882963 | None:intergenic | 65.0% | |
| ! | AGCACTCGCTGACTGCCACG+TGG | + | chr5.4:61882959-61882978 | MS.gene54167:CDS | 65.0% |
| ! | CATGGGCAGTATGCGCCGGT+GGG | + | chr5.4:61883086-61883105 | MS.gene54167:CDS | 65.0% |
| GCATGGGCAGTATGCGCCGG+TGG | + | chr5.4:61883085-61883104 | MS.gene54167:CDS | 70.0% | |
| ! | GCGAGTGCTGCGTACGCGTC+TGG | - | chr5.4:61882948-61882967 | None:intergenic | 70.0% |
| CGCCGTCATACCGACGGCGC+TGG | - | chr5.4:61882811-61882830 | None:intergenic | 75.0% | |
| ! | CTCATGCCGCGACGGCGCCG+CGG | + | chr5.4:61882743-61882762 | MS.gene54167:CDS | 80.0% |
| ! | GTGATGCCGCGGCGCCGTCG+CGG | - | chr5.4:61882752-61882771 | None:intergenic | 80.0% |
| ! | CGCGGCGCCGTCGCGGCATG+AGG | - | chr5.4:61882745-61882764 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61882705 | 61884703 | 61882705 | ID=MS.gene54167 |
| chr5.4 | mRNA | 61882705 | 61884703 | 61882705 | ID=MS.gene54167.t1;Parent=MS.gene54167 |
| chr5.4 | exon | 61882705 | 61883346 | 61882705 | ID=MS.gene54167.t1.exon1;Parent=MS.gene54167.t1 |
| chr5.4 | CDS | 61882705 | 61883346 | 61882705 | ID=cds.MS.gene54167.t1;Parent=MS.gene54167.t1 |
| chr5.4 | exon | 61884389 | 61884703 | 61884389 | ID=MS.gene54167.t1.exon2;Parent=MS.gene54167.t1 |
| chr5.4 | CDS | 61884389 | 61884703 | 61884389 | ID=cds.MS.gene54167.t1;Parent=MS.gene54167.t1 |
| Gene Sequence |
| Protein sequence |
