Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009810.t1 | XP_003615761.1 | 98.4 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 1.50E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009810.t1 | O64738 | 68.1 | 329 | 84 | 3 | 11 | 318 | 13 | 341 | 4.3e-119 | 429.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009810.t1 | G7K740 | 98.4 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 1.1e-168 | 602.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69772 | MS.gene009810 | PPI |
| MS.gene009810 | MS.gene69773 | PPI |
| MS.gene009810 | MS.gene70500 | PPI |
| MS.gene009810 | MS.gene70499 | PPI |
| MS.gene066193 | MS.gene009810 | PPI |
| MS.gene82418 | MS.gene009810 | PPI |
| MS.gene56439 | MS.gene009810 | PPI |
| MS.gene70495 | MS.gene009810 | PPI |
| MS.gene067575 | MS.gene009810 | PPI |
| MS.gene009810 | MS.gene25737 | PPI |
| MS.gene009810 | MS.gene69774 | PPI |
| MS.gene044303 | MS.gene009810 | PPI |
| MS.gene071273 | MS.gene009810 | PPI |
| MS.gene98090 | MS.gene009810 | PPI |
| MS.gene009810 | MS.gene044300 | PPI |
| MS.gene62494 | MS.gene009810 | PPI |
| MS.gene009810 | MS.gene73898 | PPI |
| MS.gene040467 | MS.gene009810 | PPI |
| MS.gene009810 | MS.gene038972 | PPI |
| MS.gene009810 | MS.gene90024 | PPI |
| MS.gene071270 | MS.gene009810 | PPI |
| MS.gene045723 | MS.gene009810 | PPI |
| MS.gene009810 | MS.gene25738 | PPI |
| MS.gene009810 | MS.gene000434 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009810.t1 | MTR_5g071990 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 637 |
| MS.gene009810.t1 | MTR_2g064310 | 40.059 | 337 | 170 | 7 | 5 | 318 | 31 | 358 | 9.12e-78 | 241 |
| MS.gene009810.t1 | MTR_4g083570 | 41.667 | 324 | 163 | 7 | 13 | 318 | 35 | 350 | 3.69e-77 | 239 |
| MS.gene009810.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 33 | 349 | 7.61e-74 | 231 |
| MS.gene009810.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 56 | 372 | 7.81e-74 | 232 |
| MS.gene009810.t1 | MTR_3g081640 | 39.306 | 346 | 174 | 7 | 1 | 318 | 24 | 361 | 9.47e-74 | 231 |
| MS.gene009810.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 61 | 377 | 1.09e-73 | 232 |
| MS.gene009810.t1 | MTR_8g105030 | 40.606 | 330 | 168 | 8 | 4 | 312 | 25 | 347 | 1.10e-70 | 224 |
| MS.gene009810.t1 | MTR_3g081580 | 40.549 | 328 | 158 | 8 | 1 | 304 | 24 | 338 | 3.75e-70 | 222 |
| MS.gene009810.t1 | MTR_3g081690 | 42.105 | 304 | 142 | 7 | 16 | 298 | 56 | 346 | 5.78e-68 | 216 |
| MS.gene009810.t1 | MTR_3g081690 | 42.105 | 304 | 142 | 7 | 16 | 298 | 33 | 323 | 5.91e-68 | 216 |
| MS.gene009810.t1 | MTR_1g016120 | 37.838 | 370 | 171 | 9 | 3 | 318 | 10 | 374 | 4.82e-66 | 212 |
| MS.gene009810.t1 | MTR_6g007687 | 39.571 | 326 | 180 | 7 | 3 | 316 | 25 | 345 | 5.91e-66 | 211 |
| MS.gene009810.t1 | MTR_3g104400 | 38.095 | 357 | 163 | 8 | 15 | 318 | 14 | 365 | 4.72e-63 | 204 |
| MS.gene009810.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 56 | 188 | 6.39e-46 | 155 |
| MS.gene009810.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 100 | 232 | 4.62e-45 | 154 |
| MS.gene009810.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 78 | 210 | 6.90e-45 | 153 |
| MS.gene009810.t1 | MTR_3g058630 | 23.642 | 313 | 200 | 9 | 25 | 317 | 55 | 348 | 3.27e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009810.t1 | AT2G30080 | 68.693 | 329 | 82 | 3 | 11 | 318 | 13 | 341 | 4.53e-161 | 453 |
| MS.gene009810.t1 | AT1G31260 | 39.104 | 335 | 163 | 7 | 14 | 318 | 41 | 364 | 3.32e-71 | 225 |
| MS.gene009810.t1 | AT2G04032 | 38.973 | 331 | 174 | 9 | 10 | 318 | 41 | 365 | 1.09e-70 | 224 |
| MS.gene009810.t1 | AT4G19690 | 39.557 | 316 | 169 | 7 | 15 | 318 | 42 | 347 | 4.55e-68 | 216 |
| MS.gene009810.t1 | AT2G32270 | 41.479 | 311 | 174 | 7 | 8 | 318 | 37 | 339 | 6.21e-68 | 216 |
| MS.gene009810.t1 | AT3G12750 | 39.490 | 314 | 169 | 6 | 21 | 318 | 47 | 355 | 8.51e-67 | 213 |
| MS.gene009810.t1 | AT1G05300 | 40.000 | 335 | 171 | 9 | 8 | 318 | 32 | 360 | 1.23e-66 | 213 |
| MS.gene009810.t1 | AT4G19680 | 37.423 | 326 | 184 | 6 | 8 | 318 | 30 | 350 | 2.04e-65 | 209 |
| MS.gene009810.t1 | AT5G62160 | 36.364 | 330 | 180 | 4 | 10 | 318 | 35 | 355 | 5.40e-64 | 206 |
| MS.gene009810.t1 | AT1G10970 | 35.884 | 379 | 177 | 9 | 1 | 318 | 1 | 374 | 2.81e-63 | 205 |
| MS.gene009810.t1 | AT1G10970 | 35.884 | 379 | 177 | 9 | 1 | 318 | 1 | 374 | 2.81e-63 | 205 |
| MS.gene009810.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 268 | 425 | 3.36e-45 | 159 |
| MS.gene009810.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 37 | 174 | 1.69e-14 | 73.9 |
| MS.gene009810.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 258 | 415 | 3.62e-45 | 159 |
| MS.gene009810.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 27 | 164 | 1.52e-14 | 74.3 |
| MS.gene009810.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 186 | 344 | 7.87e-45 | 156 |
| MS.gene009810.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 233 | 391 | 2.16e-44 | 156 |
| MS.gene009810.t1 | AT4G33020 | 35.156 | 128 | 76 | 3 | 3 | 130 | 24 | 144 | 1.81e-12 | 67.8 |
| MS.gene009810.t1 | AT4G19680 | 33.333 | 222 | 131 | 4 | 8 | 214 | 30 | 249 | 6.36e-38 | 135 |
| MS.gene009810.t1 | AT1G05300 | 35.931 | 231 | 121 | 7 | 8 | 214 | 32 | 259 | 1.54e-31 | 119 |
| MS.gene009810.t1 | AT4G19690 | 37.273 | 110 | 67 | 2 | 15 | 124 | 42 | 149 | 7.62e-17 | 78.2 |
| MS.gene009810.t1 | AT1G55910 | 25.249 | 301 | 194 | 13 | 24 | 317 | 48 | 324 | 7.63e-15 | 74.3 |
| MS.gene009810.t1 | AT1G60960 | 35.252 | 139 | 85 | 3 | 1 | 136 | 37 | 173 | 9.04e-15 | 73.9 |
Find 76 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGAATTCTAATTTATA+TGG | 0.232876 | 5.3:-56983725 | MS.gene009810:CDS |
| CCTTCAATTATTAAGGCATT+AGG | 0.237081 | 5.3:+56983766 | None:intergenic |
| CTCAAAATGTTTGTACTATA+AGG | 0.241674 | 5.3:-56985050 | MS.gene009810:CDS |
| ATATTTCATTCAGTGATAAT+TGG | 0.257500 | 5.3:-56985090 | MS.gene009810:CDS |
| CTATGTCTATTCTTGCCCTT+TGG | 0.281832 | 5.3:-56983597 | MS.gene009810:CDS |
| TAGTAACCCTTCAATTATTA+AGG | 0.283235 | 5.3:+56983759 | None:intergenic |
| GCGAGTGCTGCGTAGGCGTC+TGG | 0.293503 | 5.3:+56985360 | None:intergenic |
| TATGTCTATTCTTGCCCTTT+GGG | 0.306616 | 5.3:-56983596 | MS.gene009810:CDS |
| TTACTAGGTTCAATTTCTTC+AGG | 0.317611 | 5.3:-56983742 | MS.gene009810:CDS |
| CGCAATTCTCGCGCTCTTTG+TGG | 0.324509 | 5.3:-56985268 | MS.gene009810:CDS |
| CTTCAATTATTAAGGCATTA+GGG | 0.325767 | 5.3:+56983767 | None:intergenic |
| AAGATTGGTTTCACAAGTAT+TGG | 0.338840 | 5.3:-56985124 | MS.gene009810:CDS |
| AAGGCCTTTAGTTGCTGCTT+TGG | 0.349354 | 5.3:-56985031 | MS.gene009810:CDS |
| AGTGATAATTGGTGTGACTA+TGG | 0.373775 | 5.3:-56985079 | MS.gene009810:CDS |
| GTTTCACAAGTATTGGAGAT+TGG | 0.380175 | 5.3:-56985117 | MS.gene009810:CDS |
| CGTCTGGGAGGACGTGGACT+AGG | 0.381509 | 5.3:+56985376 | None:intergenic |
| TCCCTAAAATTATCCCCATT+GGG | 0.383656 | 5.3:+56983827 | None:intergenic |
| CCTAATGCCTTAATAATTGA+AGG | 0.388464 | 5.3:-56983766 | MS.gene009810:CDS |
| GATTAAATTGAAACAAAGAT+TGG | 0.398065 | 5.3:-56985139 | MS.gene009810:CDS |
| TTTGAAGGGATGGGTCTTGG+TGG | 0.410362 | 5.3:-56984994 | MS.gene009810:CDS |
| TTTCACAAGTATTGGAGATT+GGG | 0.410797 | 5.3:-56985116 | MS.gene009810:CDS |
| TTAATAATTGAAGGGTTACT+AGG | 0.416508 | 5.3:-56983757 | MS.gene009810:CDS |
| GGTGAAGGAGAGTGTGAAAG+AGG | 0.438001 | 5.3:-56985171 | MS.gene009810:CDS |
| TTGGAGTTGGAAGGTGGTGA+AGG | 0.444010 | 5.3:-56985186 | MS.gene009810:CDS |
| ATCCCTAAAATTATCCCCAT+TGG | 0.445704 | 5.3:+56983826 | None:intergenic |
| GTGAAGGAGAGTGTGAAAGA+GGG | 0.456968 | 5.3:-56985170 | MS.gene009810:CDS |
| ATGATATTATTCTCATTGAC+TGG | 0.468904 | 5.3:-56983805 | MS.gene009810:CDS |
| AGAAGCAGAACCCATAGTTA+AGG | 0.473744 | 5.3:+56983618 | None:intergenic |
| TCTTGGTGGTTGTGTTGCTC+AGG | 0.475918 | 5.3:-56984980 | MS.gene009810:intron |
| ACGTGGCATCCCGTCATCCT+TGG | 0.476790 | 5.3:-56985329 | MS.gene009810:CDS |
| TTAATAAAATGTTTCGCGGC+AGG | 0.482738 | 5.3:-56985417 | MS.gene009810:CDS |
| CGTAGGCGTCTGGGAGGACG+TGG | 0.492002 | 5.3:+56985370 | None:intergenic |
| CGAGTTCTCACGTGGAGCAC+GGG | 0.508291 | 5.3:-56985236 | MS.gene009810:CDS |
| TGAAGGAGAGTGTGAAAGAG+GGG | 0.514863 | 5.3:-56985169 | MS.gene009810:CDS |
| CGAGTGCTGCGTAGGCGTCT+GGG | 0.515739 | 5.3:+56985361 | None:intergenic |
| GCACGGGCAGTATGCGCCGG+TGG | 0.518562 | 5.3:-56985220 | MS.gene009810:CDS |
| GTCTGGGAGGACGTGGACTA+GGG | 0.522851 | 5.3:+56985377 | None:intergenic |
| GGGTGAGAAAGAGTTGGAGT+TGG | 0.525470 | 5.3:-56985199 | MS.gene009810:CDS |
| ACTAATGCTCTGTCGTATAA+CGG | 0.530063 | 5.3:+56985441 | None:intergenic |
| AGTATTAATAAAATGTTTCG+CGG | 0.530711 | 5.3:-56985421 | MS.gene009810:CDS |
| GAGAAAGAGTTGGAGTTGGA+AGG | 0.541376 | 5.3:-56985195 | MS.gene009810:CDS |
| AAGACACGTGCTAAAAGTAC+TGG | 0.544421 | 5.3:+56985474 | None:intergenic |
| TTGCAGGCAGGATTTAGCTA+TGG | 0.549653 | 5.3:-56983889 | MS.gene009810:intron |
| AAAATCCTTCCAAGGATGAC+GGG | 0.549940 | 5.3:+56985320 | None:intergenic |
| AACTAGCGCCGTCGGTATGA+CGG | 0.550027 | 5.3:-56985499 | MS.gene009810:CDS |
| GCGAGTTCTCACGTGGAGCA+CGG | 0.554264 | 5.3:-56985237 | MS.gene009810:CDS |
| GCAGTCAGCGAGTGCTGCGT+AGG | 0.559371 | 5.3:+56985353 | None:intergenic |
| GAAAATCCTTCCAAGGATGA+CGG | 0.562279 | 5.3:+56985319 | None:intergenic |
| AAAGCCAAAGCAGCAACTAA+AGG | 0.564655 | 5.3:+56985027 | None:intergenic |
| GAGAGTTACTAGTCCTGAGA+AGG | 0.569392 | 5.3:+56985296 | None:intergenic |
| CTAATGCCTTAATAATTGAA+GGG | 0.571906 | 5.3:-56983765 | MS.gene009810:CDS |
| GTGATGCCGCGACGCCGTCG+CGG | 0.574554 | 5.3:+56985556 | None:intergenic |
| TTCATGCCGCGACGGCGTCG+CGG | 0.575527 | 5.3:-56985562 | MS.gene009810:CDS |
| CACGGGCAGTATGCGCCGGT+GGG | 0.582941 | 5.3:-56985219 | MS.gene009810:CDS |
| GTGATAATTGGTGTGACTAT+GGG | 0.589353 | 5.3:-56985078 | MS.gene009810:CDS |
| GAGAAGGGAAAATCCTTCCA+AGG | 0.600619 | 5.3:+56985312 | None:intergenic |
| GGCATCCCGTCATCCTTGGA+AGG | 0.601495 | 5.3:-56985325 | MS.gene009810:CDS |
| ATATTCATAACTAGCGCCGT+CGG | 0.602467 | 5.3:-56985507 | MS.gene009810:CDS |
| TACTGGCGCCGTCATACCGA+CGG | 0.603515 | 5.3:+56985491 | None:intergenic |
| AAAGAGTTGGAGTTGGAAGG+TGG | 0.604922 | 5.3:-56985192 | MS.gene009810:CDS |
| TCCAACTCTTTCTCACCCAC+CGG | 0.606824 | 5.3:+56985204 | None:intergenic |
| AGAGTTACTAGTCCTGAGAA+GGG | 0.607003 | 5.3:+56985297 | None:intergenic |
| GGAGCACGGGCAGTATGCGC+CGG | 0.611064 | 5.3:-56985223 | MS.gene009810:CDS |
| CCCTAAAATTATCCCCATTG+GGG | 0.615298 | 5.3:+56983828 | None:intergenic |
| TCAGGACTAGTAACTCTCAT+CGG | 0.616673 | 5.3:-56985291 | MS.gene009810:CDS |
| CCTCGTAGCGAGTTCTCACG+TGG | 0.624455 | 5.3:-56985244 | MS.gene009810:CDS |
| AGAGAAACTTCATGCCGCGA+CGG | 0.628357 | 5.3:-56985570 | MS.gene009810:CDS |
| TAGTTATGAATATGACAAAG+AGG | 0.631556 | 5.3:+56985517 | None:intergenic |
| AGTTATGAATATGACAAAGA+GGG | 0.635092 | 5.3:+56985518 | None:intergenic |
| GCCGGTGGGTGAGAAAGAGT+TGG | 0.644599 | 5.3:-56985205 | MS.gene009810:CDS |
| AGGATTTAGCTATGGAACAG+TGG | 0.672083 | 5.3:-56983881 | MS.gene009810:CDS |
| AGCACTCGCTGACTGCCACG+TGG | 0.689491 | 5.3:-56985346 | MS.gene009810:CDS |
| AAGGATGACGGGATGCCACG+TGG | 0.691539 | 5.3:+56985331 | None:intergenic |
| CCACGTGAGAACTCGCTACG+AGG | 0.702927 | 5.3:+56985244 | None:intergenic |
| GTGCTGCGTAGGCGTCTGGG+AGG | 0.713196 | 5.3:+56985364 | None:intergenic |
| TTTCAGTAACAACCCCAATG+GGG | 0.728298 | 5.3:-56983840 | MS.gene009810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTTATAATTTAAA+AGG | + | chr5.3:56985243-56985262 | None:intergenic | 0.0% |
| !! | AAAATAATATAGTAATATTG+AGG | - | chr5.3:56985101-56985120 | MS.gene009810:CDS | 10.0% |
| !!! | ATGATAAAAAAAACTTTTAA+CGG | + | chr5.3:56984980-56984999 | None:intergenic | 10.0% |
| !!! | ATTTGAAATTACAAATATAA+TGG | - | chr5.3:56985184-56985203 | MS.gene009810:CDS | 10.0% |
| !!! | TTTGAAATTACAAATATAAT+GGG | - | chr5.3:56985185-56985204 | MS.gene009810:CDS | 10.0% |
| !! | ATGAAAGATAAAAAGTTAAT+TGG | - | chr5.3:56984309-56984328 | MS.gene009810:intron | 15.0% |
| !! | TTAACAATAAAAAGATGTAA+TGG | - | chr5.3:56984785-56984804 | MS.gene009810:intron | 15.0% |
| !!! | AAATTTTCCTAAAAGAATTA+TGG | + | chr5.3:56984852-56984871 | None:intergenic | 15.0% |
| !!! | AATTTTCCTAAAAGAATTAT+GGG | + | chr5.3:56984851-56984870 | None:intergenic | 15.0% |
| !!! | TAATGAATTTTGTAGAATTA+CGG | - | chr5.3:56984345-56984364 | MS.gene009810:intron | 15.0% |
| !!! | TCTTAAACAACTTTTTATAT+GGG | - | chr5.3:56985010-56985029 | MS.gene009810:CDS | 15.0% |
| !!! | TTCTTAAACAACTTTTTATA+TGG | - | chr5.3:56985009-56985028 | MS.gene009810:CDS | 15.0% |
| !! | AAAGATGTAATGGTTTAAAA+TGG | - | chr5.3:56984795-56984814 | MS.gene009810:intron | 20.0% |
| !! | AATATAGTAATATTGAGGAT+TGG | - | chr5.3:56985106-56985125 | MS.gene009810:CDS | 20.0% |
| !! | AGTATTAATAAAATGTTTCG+CGG | - | chr5.3:56983770-56983789 | MS.gene009810:CDS | 20.0% |
| !! | ATATAGTAATATTGAGGATT+GGG | - | chr5.3:56985107-56985126 | MS.gene009810:CDS | 20.0% |
| !! | ATATTTCATTCAGTGATAAT+TGG | - | chr5.3:56984101-56984120 | MS.gene009810:intron | 20.0% |
| !! | GATTAAATTGAAACAAAGAT+TGG | - | chr5.3:56984052-56984071 | MS.gene009810:intron | 20.0% |
| !! | TTCAGGAATTCTAATTTATA+TGG | - | chr5.3:56985466-56985485 | MS.gene009810:CDS | 20.0% |
| !!! | ATGTTTTTAAACAACTTATG+TGG | + | chr5.3:56984881-56984900 | None:intergenic | 20.0% |
| !!! | CATATGCTATAATTTTAAGA+TGG | + | chr5.3:56985162-56985181 | None:intergenic | 20.0% |
| !!! | TGTTTTTAAACAACTTATGT+GGG | + | chr5.3:56984880-56984899 | None:intergenic | 20.0% |
| ! | AAGTAAAGCAATAGAAAGAA+AGG | + | chr5.3:56984250-56984269 | None:intergenic | 25.0% |
| ! | ACCATCTAAACTATTAGAAT+GGG | + | chr5.3:56985067-56985086 | None:intergenic | 25.0% |
| ! | AGTTATGAATATGACAAAGA+GGG | + | chr5.3:56983676-56983695 | None:intergenic | 25.0% |
| ! | ATGATATTATTCTCATTGAC+TGG | - | chr5.3:56985386-56985405 | MS.gene009810:CDS | 25.0% |
| ! | CTAATGCCTTAATAATTGAA+GGG | - | chr5.3:56985426-56985445 | MS.gene009810:CDS | 25.0% |
| ! | CTCAAAATGTTTGTACTATA+AGG | - | chr5.3:56984141-56984160 | MS.gene009810:intron | 25.0% |
| ! | CTTACCATTAATATAATTGC+AGG | - | chr5.3:56985286-56985305 | MS.gene009810:CDS | 25.0% |
| ! | TAATAAATATTGAGCAGCAA+TGG | + | chr5.3:56984279-56984298 | None:intergenic | 25.0% |
| ! | TAGTAACCCTTCAATTATTA+AGG | + | chr5.3:56985435-56985454 | None:intergenic | 25.0% |
| ! | TAGTTATGAATATGACAAAG+AGG | + | chr5.3:56983677-56983696 | None:intergenic | 25.0% |
| ! | TTAATAATTGAAGGGTTACT+AGG | - | chr5.3:56985434-56985453 | MS.gene009810:CDS | 25.0% |
| ! | TTGACTGCAGTATATTATAT+GGG | - | chr5.3:56984754-56984773 | MS.gene009810:intron | 25.0% |
| ! | TTGTAAGTGAAAATAATACG+AGG | + | chr5.3:56984441-56984460 | None:intergenic | 25.0% |
| ! | TTTGACTGCAGTATATTATA+TGG | - | chr5.3:56984753-56984772 | MS.gene009810:intron | 25.0% |
| !! | CGTATTATTTTCACTTACAA+GGG | - | chr5.3:56984441-56984460 | MS.gene009810:intron | 25.0% |
| !! | CTTCAATTATTAAGGCATTA+GGG | + | chr5.3:56985427-56985446 | None:intergenic | 25.0% |
| !! | CTTTTCATCAGATTTTTGAA+GGG | - | chr5.3:56984183-56984202 | MS.gene009810:intron | 25.0% |
| !! | TCGTATTATTTTCACTTACA+AGG | - | chr5.3:56984440-56984459 | MS.gene009810:intron | 25.0% |
| !!! | AGTTAATTGGATGTTTTGAT+TGG | - | chr5.3:56984322-56984341 | MS.gene009810:intron | 25.0% |
| !!! | TTCCTTATTGTTGATTTGTT+GGG | - | chr5.3:56984533-56984552 | MS.gene009810:intron | 25.0% |
| !!! | TTTCCTTATTGTTGATTTGT+TGG | - | chr5.3:56984532-56984551 | MS.gene009810:intron | 25.0% |
| AAGTGAGTTGTAGTTAACTA+TGG | + | chr5.3:56984927-56984946 | None:intergenic | 30.0% | |
| ACCCATTCTAATAGTTTAGA+TGG | - | chr5.3:56985063-56985082 | MS.gene009810:CDS | 30.0% | |
| ATACAAGTACATCTATTGAG+TGG | + | chr5.3:56984677-56984696 | None:intergenic | 30.0% | |
| CCTAATGCCTTAATAATTGA+AGG | - | chr5.3:56985425-56985444 | MS.gene009810:CDS | 30.0% | |
| CTAAAAGAATTATGGGTGAA+AGG | + | chr5.3:56984844-56984863 | None:intergenic | 30.0% | |
| CTGCTCAATATTTATTAGAG+AGG | - | chr5.3:56984282-56984301 | MS.gene009810:intron | 30.0% | |
| GACCATCTAAACTATTAGAA+TGG | + | chr5.3:56985068-56985087 | None:intergenic | 30.0% | |
| TGTCAAGAAAATGAAAGAGT+AGG | + | chr5.3:56984636-56984655 | None:intergenic | 30.0% | |
| TTACTAGGTTCAATTTCTTC+AGG | - | chr5.3:56985449-56985468 | MS.gene009810:CDS | 30.0% | |
| TTCTAAACGTGTAATGATGT+TGG | - | chr5.3:56984493-56984512 | MS.gene009810:intron | 30.0% | |
| ! | AAACTATTAGAATGGGTTTG+TGG | + | chr5.3:56985060-56985079 | None:intergenic | 30.0% |
| ! | AACTATTAGAATGGGTTTGT+GGG | + | chr5.3:56985059-56985078 | None:intergenic | 30.0% |
| ! | ATATAATGGGACAACAAGAA+TGG | - | chr5.3:56985198-56985217 | MS.gene009810:CDS | 30.0% |
| ! | CCTTCAATTATTAAGGCATT+AGG | + | chr5.3:56985428-56985447 | None:intergenic | 30.0% |
| ! | CTTTCACCCATAATTCTTTT+AGG | - | chr5.3:56984842-56984861 | MS.gene009810:intron | 30.0% |
| ! | GCTTTTCATCAGATTTTTGA+AGG | - | chr5.3:56984182-56984201 | MS.gene009810:intron | 30.0% |
| ! | TCTTTTGTTGCCTTAACTAT+GGG | - | chr5.3:56985563-56985582 | MS.gene009810:CDS | 30.0% |
| ! | TTCTTTTGTTGCCTTAACTA+TGG | - | chr5.3:56985562-56985581 | MS.gene009810:CDS | 30.0% |
| !! | AAGATTGGTTTCACAAGTAT+TGG | - | chr5.3:56984067-56984086 | MS.gene009810:intron | 30.0% |
| !! | TCCTTATTGTTGATTTGTTG+GGG | - | chr5.3:56984534-56984553 | MS.gene009810:intron | 30.0% |
| !! | TTTCACAAGTATTGGAGATT+GGG | - | chr5.3:56984075-56984094 | MS.gene009810:intron | 30.0% |
| ACTAATGCTCTGTCGTATAA+CGG | + | chr5.3:56983753-56983772 | None:intergenic | 35.0% | |
| AGAAAAAATCATGTAGCCAC+TGG | + | chr5.3:56984477-56984496 | None:intergenic | 35.0% | |
| AGTGATAATTGGTGTGACTA+TGG | - | chr5.3:56984112-56984131 | MS.gene009810:intron | 35.0% | |
| ATACTGCAGTCAAATGACAT+TGG | + | chr5.3:56984747-56984766 | None:intergenic | 35.0% | |
| ATCCCTAAAATTATCCCCAT+TGG | + | chr5.3:56985368-56985387 | None:intergenic | 35.0% | |
| CCATTAATATAATTGCAGGC+AGG | - | chr5.3:56985290-56985309 | MS.gene009810:CDS | 35.0% | |
| CCTGCCTGCAATTATATTAA+TGG | + | chr5.3:56985293-56985312 | None:intergenic | 35.0% | |
| GAAAAAATCATGTAGCCACT+GGG | + | chr5.3:56984476-56984495 | None:intergenic | 35.0% | |
| GTGATAATTGGTGTGACTAT+GGG | - | chr5.3:56984113-56984132 | MS.gene009810:intron | 35.0% | |
| TATGTCTATTCTTGCCCTTT+GGG | - | chr5.3:56985595-56985614 | MS.gene009810:CDS | 35.0% | |
| TCCCCAACAAATCAACAATA+AGG | + | chr5.3:56984538-56984557 | None:intergenic | 35.0% | |
| TCCCTAAAATTATCCCCATT+GGG | + | chr5.3:56985367-56985386 | None:intergenic | 35.0% | |
| TTAATAAAATGTTTCGCGGC+AGG | - | chr5.3:56983774-56983793 | MS.gene009810:CDS | 35.0% | |
| TTCTGATCCACGCTTAAAAA+AGG | - | chr5.3:56985538-56985557 | MS.gene009810:CDS | 35.0% | |
| ! | TTCATGACAGAACTCGATTT+TGG | - | chr5.3:56984605-56984624 | MS.gene009810:intron | 35.0% |
| ! | TTTTCAGTAACAACCCCAAT+GGG | - | chr5.3:56985350-56985369 | MS.gene009810:CDS | 35.0% |
| !! | CATCAGATTTTTGAAGGGAT+GGG | - | chr5.3:56984188-56984207 | MS.gene009810:intron | 35.0% |
| !! | GTTTCACAAGTATTGGAGAT+TGG | - | chr5.3:56984074-56984093 | MS.gene009810:intron | 35.0% |
| !! | TCATCAGATTTTTGAAGGGA+TGG | - | chr5.3:56984187-56984206 | MS.gene009810:intron | 35.0% |
| !!! | AAAGAAGCCTTTTTTAAGCG+TGG | + | chr5.3:56985548-56985567 | None:intergenic | 35.0% |
| AAAATCCTTCCAAGGATGAC+GGG | + | chr5.3:56983874-56983893 | None:intergenic | 40.0% | |
| AAAGCCAAAGCAGCAACTAA+AGG | + | chr5.3:56984167-56984186 | None:intergenic | 40.0% | |
| AGAAGCAGAACCCATAGTTA+AGG | + | chr5.3:56985576-56985595 | None:intergenic | 40.0% | |
| AGAGTTACTAGTCCTGAGAA+GGG | + | chr5.3:56983897-56983916 | None:intergenic | 40.0% | |
| AGGATTTAGCTATGGAACAG+TGG | - | chr5.3:56985310-56985329 | MS.gene009810:CDS | 40.0% | |
| ATATTCATAACTAGCGCCGT+CGG | - | chr5.3:56983684-56983703 | MS.gene009810:CDS | 40.0% | |
| CCCTAAAATTATCCCCATTG+GGG | + | chr5.3:56985366-56985385 | None:intergenic | 40.0% | |
| CTATGTCTATTCTTGCCCTT+TGG | - | chr5.3:56985594-56985613 | MS.gene009810:CDS | 40.0% | |
| GAAAATCCTTCCAAGGATGA+CGG | + | chr5.3:56983875-56983894 | None:intergenic | 40.0% | |
| TTTCAGTAACAACCCCAATG+GGG | - | chr5.3:56985351-56985370 | MS.gene009810:CDS | 40.0% | |
| ! | AAGACACGTGCTAAAAGTAC+TGG | + | chr5.3:56983720-56983739 | None:intergenic | 40.0% |
| ! | ACCCCAATGGGGATAATTTT+AGG | - | chr5.3:56985362-56985381 | MS.gene009810:CDS | 40.0% |
| ! | CCCCAATGGGGATAATTTTA+GGG | - | chr5.3:56985363-56985382 | MS.gene009810:CDS | 40.0% |
| ! | GTTTTCAGTAACAACCCCAA+TGG | - | chr5.3:56985349-56985368 | MS.gene009810:CDS | 40.0% |
| ! | TCAGGACTAGTAACTCTCAT+CGG | - | chr5.3:56983900-56983919 | MS.gene009810:intron | 40.0% |
| !! | ATTTTTGAAGGGATGGGTCT+TGG | - | chr5.3:56984194-56984213 | MS.gene009810:intron | 40.0% |
| !! | TTGTTGATTTGTTGGGGACT+TGG | - | chr5.3:56984540-56984559 | MS.gene009810:intron | 40.0% |
| AAAGAGTTGGAGTTGGAAGG+TGG | - | chr5.3:56983999-56984018 | MS.gene009810:intron | 45.0% | |
| GAGAAAGAGTTGGAGTTGGA+AGG | - | chr5.3:56983996-56984015 | MS.gene009810:intron | 45.0% | |
| GAGAAGGGAAAATCCTTCCA+AGG | + | chr5.3:56983882-56983901 | None:intergenic | 45.0% | |
| GAGAGTTACTAGTCCTGAGA+AGG | + | chr5.3:56983898-56983917 | None:intergenic | 45.0% | |
| TTGCAGGCAGGATTTAGCTA+TGG | - | chr5.3:56985302-56985321 | MS.gene009810:CDS | 45.0% | |
| ! | AAGGCCTTTAGTTGCTGCTT+TGG | - | chr5.3:56984160-56984179 | MS.gene009810:intron | 45.0% |
| ! | CTTTTAGCACGTGTCTTTCG+AGG | - | chr5.3:56983723-56983742 | MS.gene009810:CDS | 45.0% |
| ! | GTGAAGGAGAGTGTGAAAGA+GGG | - | chr5.3:56984021-56984040 | MS.gene009810:intron | 45.0% |
| ! | TGAAGGAGAGTGTGAAAGAG+GGG | - | chr5.3:56984022-56984041 | MS.gene009810:intron | 45.0% |
| ! | TGGAAGGATTTTCCCTTCTC+AGG | - | chr5.3:56983882-56983901 | MS.gene009810:CDS | 45.0% |
| !!! | TAAATTATAAATATTTTACA+TGG | - | chr5.3:56985245-56985264 | MS.gene009810:CDS | 5.0% |
| AGAGAAACTTCATGCCGCGA+CGG | - | chr5.3:56983621-56983640 | MS.gene009810:CDS | 50.0% | |
| CAAGGGAATTCTTAGCCCAG+TGG | - | chr5.3:56984458-56984477 | MS.gene009810:intron | 50.0% | |
| GGGTGAGAAAGAGTTGGAGT+TGG | - | chr5.3:56983992-56984011 | MS.gene009810:intron | 50.0% | |
| TCCAACTCTTTCTCACCCAC+CGG | + | chr5.3:56983990-56984009 | None:intergenic | 50.0% | |
| TTGGAGTTGGAAGGTGGTGA+AGG | - | chr5.3:56984005-56984024 | MS.gene009810:intron | 50.0% | |
| TTTGAAGGGATGGGTCTTGG+TGG | - | chr5.3:56984197-56984216 | MS.gene009810:intron | 50.0% | |
| ! | GGTGAAGGAGAGTGTGAAAG+AGG | - | chr5.3:56984020-56984039 | MS.gene009810:intron | 50.0% |
| ! | TCTTGGTGGTTGTGTTGCTC+AGG | - | chr5.3:56984211-56984230 | MS.gene009810:intron | 50.0% |
| AACTAGCGCCGTCGGTATGA+CGG | - | chr5.3:56983692-56983711 | MS.gene009810:CDS | 55.0% | |
| CGCAATTCTCGCGCTCTTTG+TGG | - | chr5.3:56983923-56983942 | MS.gene009810:intron | 55.0% | |
| ACGTGGCATCCCGTCATCCT+TGG | - | chr5.3:56983862-56983881 | MS.gene009810:CDS | 60.0% | |
| CCACGTGAGAACTCGCTACG+AGG | + | chr5.3:56983950-56983969 | None:intergenic | 60.0% | |
| CCTCGTAGCGAGTTCTCACG+TGG | - | chr5.3:56983947-56983966 | MS.gene009810:intron | 60.0% | |
| CGAGTTCTCACGTGGAGCAC+GGG | - | chr5.3:56983955-56983974 | MS.gene009810:intron | 60.0% | |
| GCCGGTGGGTGAGAAAGAGT+TGG | - | chr5.3:56983986-56984005 | MS.gene009810:intron | 60.0% | |
| GCGAGTTCTCACGTGGAGCA+CGG | - | chr5.3:56983954-56983973 | MS.gene009810:intron | 60.0% | |
| GGCATCCCGTCATCCTTGGA+AGG | - | chr5.3:56983866-56983885 | MS.gene009810:CDS | 60.0% | |
| TACTGGCGCCGTCATACCGA+CGG | + | chr5.3:56983703-56983722 | None:intergenic | 60.0% | |
| ! | GTCTGGGAGGACGTGGACTA+GGG | + | chr5.3:56983817-56983836 | None:intergenic | 60.0% |
| !! | AAGGATGACGGGATGCCACG+TGG | + | chr5.3:56983863-56983882 | None:intergenic | 60.0% |
| CGTCTGGGAGGACGTGGACT+AGG | + | chr5.3:56983818-56983837 | None:intergenic | 65.0% | |
| ! | AGCACTCGCTGACTGCCACG+TGG | - | chr5.3:56983845-56983864 | MS.gene009810:CDS | 65.0% |
| ! | CGAGTGCTGCGTAGGCGTCT+GGG | + | chr5.3:56983833-56983852 | None:intergenic | 65.0% |
| ! | GCAGTCAGCGAGTGCTGCGT+AGG | + | chr5.3:56983841-56983860 | None:intergenic | 65.0% |
| CGTAGGCGTCTGGGAGGACG+TGG | + | chr5.3:56983824-56983843 | None:intergenic | 70.0% | |
| GGAGCACGGGCAGTATGCGC+CGG | - | chr5.3:56983968-56983987 | MS.gene009810:intron | 70.0% | |
| GTGCTGCGTAGGCGTCTGGG+AGG | + | chr5.3:56983830-56983849 | None:intergenic | 70.0% | |
| TTCATGCCGCGACGGCGTCG+CGG | - | chr5.3:56983629-56983648 | MS.gene009810:CDS | 70.0% | |
| ! | CACGGGCAGTATGCGCCGGT+GGG | - | chr5.3:56983972-56983991 | MS.gene009810:intron | 70.0% |
| ! | GCGAGTGCTGCGTAGGCGTC+TGG | + | chr5.3:56983834-56983853 | None:intergenic | 70.0% |
| GCACGGGCAGTATGCGCCGG+TGG | - | chr5.3:56983971-56983990 | MS.gene009810:intron | 75.0% | |
| GTGATGCCGCGACGCCGTCG+CGG | + | chr5.3:56983638-56983657 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 56983591 | 56985622 | 56983591 | ID=MS.gene009810 |
| chr5.3 | mRNA | 56983591 | 56985622 | 56983591 | ID=MS.gene009810.t1;Parent=MS.gene009810 |
| chr5.3 | exon | 56984981 | 56985622 | 56984981 | ID=MS.gene009810.t1.exon1;Parent=MS.gene009810.t1 |
| chr5.3 | CDS | 56984981 | 56985622 | 56984981 | ID=cds.MS.gene009810.t1;Parent=MS.gene009810.t1 |
| chr5.3 | exon | 56983591 | 56983905 | 56983591 | ID=MS.gene009810.t1.exon2;Parent=MS.gene009810.t1 |
| chr5.3 | CDS | 56983591 | 56983905 | 56983591 | ID=cds.MS.gene009810.t1;Parent=MS.gene009810.t1 |
| Gene Sequence |
| Protein sequence |
