Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56999.t1 | XP_003615761.1 | 98.7 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 6.90E-169 | 603.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56999.t1 | O64738 | 68.1 | 329 | 84 | 3 | 11 | 318 | 13 | 341 | 4.3e-119 | 429.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56999.t1 | G7K740 | 98.7 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 5.0e-169 | 603.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038972 | MS.gene56999 | PPI |
| MS.gene071273 | MS.gene56999 | PPI |
| MS.gene000434 | MS.gene56999 | PPI |
| MS.gene98090 | MS.gene56999 | PPI |
| MS.gene62494 | MS.gene56999 | PPI |
| MS.gene040467 | MS.gene56999 | PPI |
| MS.gene044300 | MS.gene56999 | PPI |
| MS.gene25737 | MS.gene56999 | PPI |
| MS.gene071270 | MS.gene56999 | PPI |
| MS.gene56999 | MS.gene69774 | PPI |
| MS.gene045723 | MS.gene56999 | PPI |
| MS.gene56999 | MS.gene73898 | PPI |
| MS.gene69772 | MS.gene56999 | PPI |
| MS.gene066193 | MS.gene56999 | PPI |
| MS.gene82418 | MS.gene56999 | PPI |
| MS.gene56439 | MS.gene56999 | PPI |
| MS.gene25738 | MS.gene56999 | PPI |
| MS.gene70500 | MS.gene56999 | PPI |
| MS.gene70495 | MS.gene56999 | PPI |
| MS.gene067575 | MS.gene56999 | PPI |
| MS.gene90024 | MS.gene56999 | PPI |
| MS.gene56999 | MS.gene69773 | PPI |
| MS.gene56999 | MS.gene70499 | PPI |
| MS.gene044303 | MS.gene56999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56999.t1 | MTR_5g071990 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0.0 | 639 |
| MS.gene56999.t1 | MTR_2g064310 | 40.059 | 337 | 170 | 7 | 5 | 318 | 31 | 358 | 9.94e-78 | 241 |
| MS.gene56999.t1 | MTR_4g083570 | 41.667 | 324 | 163 | 7 | 13 | 318 | 35 | 350 | 1.75e-77 | 241 |
| MS.gene56999.t1 | MTR_3g081640 | 39.595 | 346 | 173 | 7 | 1 | 318 | 24 | 361 | 2.59e-74 | 233 |
| MS.gene56999.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 33 | 349 | 2.79e-74 | 232 |
| MS.gene56999.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 56 | 372 | 2.96e-74 | 233 |
| MS.gene56999.t1 | MTR_3g082050 | 42.284 | 324 | 159 | 7 | 16 | 318 | 61 | 377 | 4.28e-74 | 233 |
| MS.gene56999.t1 | MTR_8g105030 | 40.606 | 330 | 168 | 8 | 4 | 312 | 25 | 347 | 7.54e-71 | 225 |
| MS.gene56999.t1 | MTR_3g081580 | 40.549 | 328 | 158 | 8 | 1 | 304 | 24 | 338 | 2.09e-70 | 223 |
| MS.gene56999.t1 | MTR_3g081690 | 42.105 | 304 | 142 | 7 | 16 | 298 | 56 | 346 | 1.79e-68 | 218 |
| MS.gene56999.t1 | MTR_3g081690 | 42.105 | 304 | 142 | 7 | 16 | 298 | 33 | 323 | 2.75e-68 | 217 |
| MS.gene56999.t1 | MTR_6g007687 | 39.571 | 326 | 180 | 7 | 3 | 316 | 25 | 345 | 1.75e-66 | 212 |
| MS.gene56999.t1 | MTR_1g016120 | 37.838 | 370 | 171 | 9 | 3 | 318 | 10 | 374 | 2.64e-66 | 213 |
| MS.gene56999.t1 | MTR_3g104400 | 38.095 | 357 | 163 | 8 | 15 | 318 | 14 | 365 | 3.85e-63 | 204 |
| MS.gene56999.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 56 | 188 | 5.99e-46 | 155 |
| MS.gene56999.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 100 | 232 | 4.62e-45 | 154 |
| MS.gene56999.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 78 | 210 | 6.14e-45 | 153 |
| MS.gene56999.t1 | MTR_3g058630 | 23.642 | 313 | 200 | 9 | 25 | 317 | 55 | 348 | 2.67e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56999.t1 | AT2G30080 | 68.693 | 329 | 82 | 3 | 11 | 318 | 13 | 341 | 2.25e-161 | 454 |
| MS.gene56999.t1 | AT1G31260 | 39.104 | 335 | 163 | 7 | 14 | 318 | 41 | 364 | 2.16e-71 | 225 |
| MS.gene56999.t1 | AT2G04032 | 38.973 | 331 | 174 | 9 | 10 | 318 | 41 | 365 | 4.87e-71 | 224 |
| MS.gene56999.t1 | AT4G19690 | 39.873 | 316 | 168 | 7 | 15 | 318 | 42 | 347 | 1.01e-68 | 218 |
| MS.gene56999.t1 | AT2G32270 | 41.801 | 311 | 173 | 7 | 8 | 318 | 37 | 339 | 1.88e-68 | 217 |
| MS.gene56999.t1 | AT1G05300 | 40.299 | 335 | 170 | 9 | 8 | 318 | 32 | 360 | 3.33e-67 | 214 |
| MS.gene56999.t1 | AT3G12750 | 38.253 | 332 | 180 | 7 | 3 | 318 | 33 | 355 | 5.53e-67 | 214 |
| MS.gene56999.t1 | AT4G19680 | 37.730 | 326 | 183 | 6 | 8 | 318 | 30 | 350 | 3.27e-66 | 212 |
| MS.gene56999.t1 | AT5G62160 | 36.667 | 330 | 179 | 4 | 10 | 318 | 35 | 355 | 1.31e-64 | 207 |
| MS.gene56999.t1 | AT1G10970 | 35.884 | 379 | 177 | 9 | 1 | 318 | 1 | 374 | 1.02e-63 | 206 |
| MS.gene56999.t1 | AT1G10970 | 35.884 | 379 | 177 | 9 | 1 | 318 | 1 | 374 | 1.02e-63 | 206 |
| MS.gene56999.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 258 | 415 | 3.58e-45 | 159 |
| MS.gene56999.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 27 | 164 | 7.72e-15 | 75.1 |
| MS.gene56999.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 268 | 425 | 3.61e-45 | 159 |
| MS.gene56999.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 37 | 174 | 8.06e-15 | 75.1 |
| MS.gene56999.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 186 | 344 | 7.87e-45 | 156 |
| MS.gene56999.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 233 | 391 | 2.34e-44 | 156 |
| MS.gene56999.t1 | AT4G33020 | 35.938 | 128 | 75 | 3 | 3 | 130 | 24 | 144 | 6.37e-13 | 69.3 |
| MS.gene56999.t1 | AT4G19680 | 33.784 | 222 | 130 | 4 | 8 | 214 | 30 | 249 | 1.04e-38 | 137 |
| MS.gene56999.t1 | AT1G05300 | 36.364 | 231 | 120 | 7 | 8 | 214 | 32 | 259 | 4.18e-32 | 120 |
| MS.gene56999.t1 | AT4G19690 | 38.182 | 110 | 66 | 2 | 15 | 124 | 42 | 149 | 1.75e-17 | 80.1 |
| MS.gene56999.t1 | AT1G60960 | 35.252 | 139 | 85 | 3 | 1 | 136 | 37 | 173 | 4.00e-15 | 75.1 |
| MS.gene56999.t1 | AT1G55910 | 25.249 | 301 | 194 | 13 | 24 | 317 | 48 | 324 | 7.00e-15 | 74.7 |
Find 80 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGAATTCTTATTTATA+TGG | 0.219397 | 5.1:-55402329 | MS.gene56999:CDS |
| TTCTGATCCACGTTTGAAAA+AGG | 0.222055 | 5.1:-55402257 | MS.gene56999:CDS |
| CCTTCAATTATTAAGGCATT+AGG | 0.237081 | 5.1:+55402370 | None:intergenic |
| CTCAAAATGTTTGTACTATA+AGG | 0.241674 | 5.1:-55403650 | MS.gene56999:CDS |
| ATATTTCATTCAGTGATAAT+TGG | 0.257500 | 5.1:-55403690 | MS.gene56999:CDS |
| CTATGTCTATTCTTGCCCTT+TGG | 0.281832 | 5.1:-55402201 | MS.gene56999:CDS |
| TAGTAACCCTTCAATTATTA+AGG | 0.283235 | 5.1:+55402363 | None:intergenic |
| GCGAGTGCTGCGTAGGCGTC+TGG | 0.293503 | 5.1:+55403960 | None:intergenic |
| TATGTCTATTCTTGCCCTTT+GGG | 0.306616 | 5.1:-55402200 | MS.gene56999:CDS |
| TTACTAGGTTCAATTTCTTC+AGG | 0.317611 | 5.1:-55402346 | MS.gene56999:CDS |
| CGCAATTCTCGCGCTCTTTG+TGG | 0.324509 | 5.1:-55403868 | MS.gene56999:CDS |
| CTTCAATTATTAAGGCATTA+GGG | 0.325767 | 5.1:+55402371 | None:intergenic |
| AAGATTGGTTTCACAAGTAT+TGG | 0.338840 | 5.1:-55403724 | MS.gene56999:CDS |
| AAGGCCTTTAGTTGCTGCTT+TGG | 0.349354 | 5.1:-55403631 | MS.gene56999:CDS |
| AGTGATAATTGGTGTGACTA+TGG | 0.373775 | 5.1:-55403679 | MS.gene56999:CDS |
| GTTTCACAAGTATTGGAGAT+TGG | 0.380175 | 5.1:-55403717 | MS.gene56999:CDS |
| GAAAGAAATCAGCTGCTATA+AGG | 0.380575 | 5.1:+55402296 | None:intergenic |
| CGTCTGGGAGGACGTGGACT+AGG | 0.381509 | 5.1:+55403976 | None:intergenic |
| TCCCTAAAATTATCCCCATT+GGG | 0.383656 | 5.1:+55402431 | None:intergenic |
| CCTAATGCCTTAATAATTGA+AGG | 0.388464 | 5.1:-55402370 | MS.gene56999:CDS |
| AATTAAATTGAAACAAAGAT+TGG | 0.400504 | 5.1:-55403739 | MS.gene56999:CDS |
| TTTGAAGGGATGGGTCTTGG+TGG | 0.410362 | 5.1:-55403594 | MS.gene56999:CDS |
| TTTCACAAGTATTGGAGATT+GGG | 0.410797 | 5.1:-55403716 | MS.gene56999:CDS |
| TTAATAATTGAAGGGTTACT+AGG | 0.416508 | 5.1:-55402361 | MS.gene56999:CDS |
| GGTGAAGGAGAGTGTGAAAG+AGG | 0.438001 | 5.1:-55403771 | MS.gene56999:CDS |
| TTGGAGTTGGAAGGTGGTGA+AGG | 0.444010 | 5.1:-55403786 | MS.gene56999:CDS |
| ATCCCTAAAATTATCCCCAT+TGG | 0.445704 | 5.1:+55402430 | None:intergenic |
| GTGAAGGAGAGTGTGAAAGA+GGG | 0.456968 | 5.1:-55403770 | MS.gene56999:CDS |
| ATGATATTATTCTCATTGAC+TGG | 0.468904 | 5.1:-55402409 | MS.gene56999:CDS |
| AGAAGCAGAACCCATAGTTA+AGG | 0.473744 | 5.1:+55402222 | None:intergenic |
| TCTTGGTGGTTGTGTTGCTC+AGG | 0.475918 | 5.1:-55403580 | MS.gene56999:intron |
| ACGTGGCATCCCGTCATCCT+TGG | 0.476790 | 5.1:-55403929 | MS.gene56999:CDS |
| CGCGGCGCCGTCGCGGCATG+AGG | 0.483703 | 5.1:+55404163 | None:intergenic |
| CGCCGTCATACCGACGGCGC+TGG | 0.489341 | 5.1:+55404097 | None:intergenic |
| CGTAGGCGTCTGGGAGGACG+TGG | 0.492002 | 5.1:+55403970 | None:intergenic |
| CGAGTTCCCACGTGGAGCAC+GGG | 0.508291 | 5.1:-55403836 | MS.gene56999:CDS |
| TGAAGGAGAGTGTGAAAGAG+GGG | 0.514863 | 5.1:-55403769 | MS.gene56999:CDS |
| CGAGTGCTGCGTAGGCGTCT+GGG | 0.515739 | 5.1:+55403961 | None:intergenic |
| GCACGGGCAGTATGCGCCGG+TGG | 0.518562 | 5.1:-55403820 | MS.gene56999:CDS |
| GTCTGGGAGGACGTGGACTA+GGG | 0.522851 | 5.1:+55403977 | None:intergenic |
| GTGATGCCGCGGCGCCGTCG+CGG | 0.525307 | 5.1:+55404156 | None:intergenic |
| GGGTGAGAAAGAGTTGGAGT+TGG | 0.525470 | 5.1:-55403799 | MS.gene56999:CDS |
| CTCATGCCGCGACGGCGCCG+CGG | 0.528189 | 5.1:-55404162 | MS.gene56999:CDS |
| ACTAATGCTCTGTCGTATAA+CGG | 0.530063 | 5.1:+55404041 | None:intergenic |
| GCGAGTTCCCACGTGGAGCA+CGG | 0.541209 | 5.1:-55403837 | MS.gene56999:CDS |
| GAGAAAGAGTTGGAGTTGGA+AGG | 0.541376 | 5.1:-55403795 | MS.gene56999:CDS |
| AAGACACGTGCTAAAAGTAC+TGG | 0.544421 | 5.1:+55404074 | None:intergenic |
| TTGCAGGCAGGATTTAGCTA+TGG | 0.549653 | 5.1:-55402493 | MS.gene56999:intron |
| AAAATCCTTCCAAGGATGAC+GGG | 0.549940 | 5.1:+55403920 | None:intergenic |
| AACCAGCGCCGTCGGTATGA+CGG | 0.558353 | 5.1:-55404099 | MS.gene56999:CDS |
| GCAGTCAGCGAGTGCTGCGT+AGG | 0.559371 | 5.1:+55403953 | None:intergenic |
| GAAAATCCTTCCAAGGATGA+CGG | 0.562279 | 5.1:+55403919 | None:intergenic |
| AAAGCCAAAGCAGCAACTAA+AGG | 0.564655 | 5.1:+55403627 | None:intergenic |
| GAGAGTTACTAGTCCTGAGA+AGG | 0.569392 | 5.1:+55403896 | None:intergenic |
| CTAATGCCTTAATAATTGAA+GGG | 0.571906 | 5.1:-55402369 | MS.gene56999:CDS |
| CATACTGCCCGTGCTCCACG+TGG | 0.572744 | 5.1:+55403829 | None:intergenic |
| ATATTTATAACCAGCGCCGT+CGG | 0.573928 | 5.1:-55404107 | MS.gene56999:CDS |
| CACGGGCAGTATGCGCCGGT+GGG | 0.582941 | 5.1:-55403819 | MS.gene56999:CDS |
| GTGATAATTGGTGTGACTAT+GGG | 0.589353 | 5.1:-55403678 | MS.gene56999:CDS |
| GAGAAGGGAAAATCCTTCCA+AGG | 0.600619 | 5.1:+55403912 | None:intergenic |
| GGCATCCCGTCATCCTTGGA+AGG | 0.601495 | 5.1:-55403925 | MS.gene56999:CDS |
| TACTGGCGCCGTCATACCGA+CGG | 0.603515 | 5.1:+55404091 | None:intergenic |
| AAAGAGTTGGAGTTGGAAGG+TGG | 0.604922 | 5.1:-55403792 | MS.gene56999:CDS |
| TCCAACTCTTTCTCACCCAC+CGG | 0.606824 | 5.1:+55403804 | None:intergenic |
| AGAGTTACTAGTCCTGAGAA+GGG | 0.607003 | 5.1:+55403897 | None:intergenic |
| GGAGCACGGGCAGTATGCGC+CGG | 0.611064 | 5.1:-55403823 | MS.gene56999:CDS |
| CCCTAAAATTATCCCCATTG+GGG | 0.615298 | 5.1:+55402432 | None:intergenic |
| AGAGAAACCTCATGCCGCGA+CGG | 0.615693 | 5.1:-55404170 | MS.gene56999:CDS |
| TCAGGACTAGTAACTCTCAT+CGG | 0.616673 | 5.1:-55403891 | MS.gene56999:CDS |
| GGTTATAAATATGACAAAGA+GGG | 0.621971 | 5.1:+55404118 | None:intergenic |
| TGGTTATAAATATGACAAAG+AGG | 0.637600 | 5.1:+55404117 | None:intergenic |
| GCCGGTGGGTGAGAAAGAGT+TGG | 0.644599 | 5.1:-55403805 | MS.gene56999:CDS |
| ATACTGCCCGTGCTCCACGT+GGG | 0.664343 | 5.1:+55403830 | None:intergenic |
| AGGATTTAGCTATGGAACAG+TGG | 0.672083 | 5.1:-55402485 | MS.gene56999:CDS |
| CCACGTGGGAACTCGCTACG+AGG | 0.680081 | 5.1:+55403844 | None:intergenic |
| CCTCGTAGCGAGTTCCCACG+TGG | 0.684446 | 5.1:-55403844 | MS.gene56999:CDS |
| AGCACTCGCTGACTGCCACG+TGG | 0.689491 | 5.1:-55403946 | MS.gene56999:CDS |
| AAGGATGACGGGATGCCACG+TGG | 0.691539 | 5.1:+55403931 | None:intergenic |
| GTGCTGCGTAGGCGTCTGGG+AGG | 0.713196 | 5.1:+55403964 | None:intergenic |
| TTTCAGTAACAACCCCAATG+GGG | 0.728298 | 5.1:-55402444 | MS.gene56999:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTTATAATTTAAA+AGG | + | chr5.1:55403843-55403862 | None:intergenic | 0.0% |
| !! | AAAATAATATAGTAATATTG+AGG | - | chr5.1:55403701-55403720 | MS.gene56999:CDS | 10.0% |
| !! | TATGAAAGATAAAAATTAAT+TGG | - | chr5.1:55402912-55402931 | MS.gene56999:intron | 10.0% |
| !!! | ATGATAAAAAAAACTTTTAA+CGG | + | chr5.1:55403580-55403599 | None:intergenic | 10.0% |
| !!! | ATTTGAAATTACAAATATAA+TGG | - | chr5.1:55403784-55403803 | MS.gene56999:CDS | 10.0% |
| !!! | TTTGAAATTACAAATATAAT+GGG | - | chr5.1:55403785-55403804 | MS.gene56999:CDS | 10.0% |
| !! | AATTAAATTGAAACAAAGAT+TGG | - | chr5.1:55402656-55402675 | MS.gene56999:intron | 15.0% |
| !! | TTAACAATAAAAAGATGTAA+TGG | - | chr5.1:55403385-55403404 | MS.gene56999:intron | 15.0% |
| !!! | AAATTTTCCTAAAAGAATTA+TGG | + | chr5.1:55403452-55403471 | None:intergenic | 15.0% |
| !!! | AATTTTCCTAAAAGAATTAT+GGG | + | chr5.1:55403451-55403470 | None:intergenic | 15.0% |
| !!! | AGTATTAATAAAATGTTTTG+CGG | - | chr5.1:55402374-55402393 | MS.gene56999:CDS | 15.0% |
| !!! | TAATGAATTTTGTAGAATTA+CGG | - | chr5.1:55402948-55402967 | MS.gene56999:intron | 15.0% |
| !!! | TCTTAAACAACTTTTTATAT+GGG | - | chr5.1:55403610-55403629 | MS.gene56999:CDS | 15.0% |
| !!! | TTCTTAAACAACTTTTTATA+TGG | - | chr5.1:55403609-55403628 | MS.gene56999:CDS | 15.0% |
| !! | AAAGATGTAATGGTTTAAAA+TGG | - | chr5.1:55403395-55403414 | MS.gene56999:intron | 20.0% |
| !! | AATATAGTAATATTGAGGAT+TGG | - | chr5.1:55403706-55403725 | MS.gene56999:CDS | 20.0% |
| !! | ATATAGTAATATTGAGGATT+GGG | - | chr5.1:55403707-55403726 | MS.gene56999:CDS | 20.0% |
| !! | ATATTTCATTCAGTGATAAT+TGG | - | chr5.1:55402705-55402724 | MS.gene56999:intron | 20.0% |
| !! | TTTATTGAATTTCCTTATTG+TGG | - | chr5.1:55403126-55403145 | MS.gene56999:intron | 20.0% |
| !!! | AATTAATTGGATGTTTTGAT+TGG | - | chr5.1:55402925-55402944 | MS.gene56999:intron | 20.0% |
| !!! | ATGTTTTTAAACAACTTATG+TGG | + | chr5.1:55403481-55403500 | None:intergenic | 20.0% |
| !!! | CATATGCTATAATTTTAAGA+TGG | + | chr5.1:55403762-55403781 | None:intergenic | 20.0% |
| !!! | TGTTTTTAAACAACTTATGT+GGG | + | chr5.1:55403480-55403499 | None:intergenic | 20.0% |
| !!! | TTCAGGAATTCTTATTTATA+TGG | - | chr5.1:55404066-55404085 | MS.gene56999:CDS | 20.0% |
| ! | AAGTAAAGCAATAGAAAGAA+AGG | + | chr5.1:55402854-55402873 | None:intergenic | 25.0% |
| ! | ACCATCTAAACTATTAGAAT+GGG | + | chr5.1:55403667-55403686 | None:intergenic | 25.0% |
| ! | ATACAAATACATCTATTGAG+TGG | + | chr5.1:55403280-55403299 | None:intergenic | 25.0% |
| ! | ATGATATTATTCTCATTGAC+TGG | - | chr5.1:55403986-55404005 | MS.gene56999:CDS | 25.0% |
| ! | CTAATGCCTTAATAATTGAA+GGG | - | chr5.1:55404026-55404045 | MS.gene56999:CDS | 25.0% |
| ! | CTCAAAATGTTTGTACTATA+AGG | - | chr5.1:55402745-55402764 | MS.gene56999:intron | 25.0% |
| ! | CTTACCATTAATATAATTGC+AGG | - | chr5.1:55403886-55403905 | MS.gene56999:CDS | 25.0% |
| ! | GGTTATAAATATGACAAAGA+GGG | + | chr5.1:55402280-55402299 | None:intergenic | 25.0% |
| ! | TAGTAACCCTTCAATTATTA+AGG | + | chr5.1:55404035-55404054 | None:intergenic | 25.0% |
| ! | TGGTTATAAATATGACAAAG+AGG | + | chr5.1:55402281-55402300 | None:intergenic | 25.0% |
| ! | TTAATAATTGAAGGGTTACT+AGG | - | chr5.1:55404034-55404053 | MS.gene56999:CDS | 25.0% |
| ! | TTGACTGCAGTTTATTATAT+GGG | - | chr5.1:55403354-55403373 | MS.gene56999:intron | 25.0% |
| ! | TTGTAAGTGAAAATAATACG+AGG | + | chr5.1:55403044-55403063 | None:intergenic | 25.0% |
| ! | TTTGACTGCAGTTTATTATA+TGG | - | chr5.1:55403353-55403372 | MS.gene56999:intron | 25.0% |
| !! | CGTATTATTTTCACTTACAA+GGG | - | chr5.1:55403044-55403063 | MS.gene56999:intron | 25.0% |
| !! | CTTCAATTATTAAGGCATTA+GGG | + | chr5.1:55404027-55404046 | None:intergenic | 25.0% |
| !! | CTTTTCATCAGATTTTTGAA+GGG | - | chr5.1:55402787-55402806 | MS.gene56999:intron | 25.0% |
| !! | TCGTATTATTTTCACTTACA+AGG | - | chr5.1:55403043-55403062 | MS.gene56999:intron | 25.0% |
| AAGTGAGTTGTAGTTAACTA+TGG | + | chr5.1:55403527-55403546 | None:intergenic | 30.0% | |
| ACCCATTCTAATAGTTTAGA+TGG | - | chr5.1:55403663-55403682 | MS.gene56999:CDS | 30.0% | |
| CCTAATGCCTTAATAATTGA+AGG | - | chr5.1:55404025-55404044 | MS.gene56999:CDS | 30.0% | |
| CTAAAAGAATTATGGGTGAA+AGG | + | chr5.1:55403444-55403463 | None:intergenic | 30.0% | |
| GACCATCTAAACTATTAGAA+TGG | + | chr5.1:55403668-55403687 | None:intergenic | 30.0% | |
| TTACTAGGTTCAATTTCTTC+AGG | - | chr5.1:55404049-55404068 | MS.gene56999:CDS | 30.0% | |
| TTCTAAACGTGTAATGATGT+TGG | - | chr5.1:55403096-55403115 | MS.gene56999:intron | 30.0% | |
| TTGTAGTTAACTATGGTTAG+AGG | + | chr5.1:55403520-55403539 | None:intergenic | 30.0% | |
| TTTCCTTATTGTGGATTTGT+TGG | - | chr5.1:55403135-55403154 | MS.gene56999:intron | 30.0% | |
| ! | AAACTATTAGAATGGGTTTG+TGG | + | chr5.1:55403660-55403679 | None:intergenic | 30.0% |
| ! | AACTATTAGAATGGGTTTGT+GGG | + | chr5.1:55403659-55403678 | None:intergenic | 30.0% |
| ! | ATATAATGGGACAACAAGAA+TGG | - | chr5.1:55403798-55403817 | MS.gene56999:CDS | 30.0% |
| ! | CCTTCAATTATTAAGGCATT+AGG | + | chr5.1:55404028-55404047 | None:intergenic | 30.0% |
| ! | CTTTCACCCATAATTCTTTT+AGG | - | chr5.1:55403442-55403461 | MS.gene56999:intron | 30.0% |
| ! | GCTTTTCATCAGATTTTTGA+AGG | - | chr5.1:55402786-55402805 | MS.gene56999:intron | 30.0% |
| ! | TCTTTTGTTGCCTTAACTAT+GGG | - | chr5.1:55404163-55404182 | MS.gene56999:CDS | 30.0% |
| ! | TTAATAAAATGTTTTGCGGC+AGG | - | chr5.1:55402378-55402397 | MS.gene56999:CDS | 30.0% |
| ! | TTCATGACAGAACTTGATTT+TGG | - | chr5.1:55403208-55403227 | MS.gene56999:intron | 30.0% |
| ! | TTCCTTATTGTGGATTTGTT+GGG | - | chr5.1:55403136-55403155 | MS.gene56999:intron | 30.0% |
| ! | TTCTTTTGTTGCCTTAACTA+TGG | - | chr5.1:55404162-55404181 | MS.gene56999:CDS | 30.0% |
| !! | AAGATTGGTTTCACAAGTAT+TGG | - | chr5.1:55402671-55402690 | MS.gene56999:intron | 30.0% |
| !! | TTTCACAAGTATTGGAGATT+GGG | - | chr5.1:55402679-55402698 | MS.gene56999:intron | 30.0% |
| AAACTGCAGTCAAATGACAT+TGG | + | chr5.1:55403347-55403366 | None:intergenic | 35.0% | |
| ACTAATGCTCTGTCGTATAA+CGG | + | chr5.1:55402357-55402376 | None:intergenic | 35.0% | |
| AGAAAAAATCATGTAGCCAC+TGG | + | chr5.1:55403080-55403099 | None:intergenic | 35.0% | |
| AGTGATAATTGGTGTGACTA+TGG | - | chr5.1:55402716-55402735 | MS.gene56999:intron | 35.0% | |
| ATCCCTAAAATTATCCCCAT+TGG | + | chr5.1:55403968-55403987 | None:intergenic | 35.0% | |
| CCATTAATATAATTGCAGGC+AGG | - | chr5.1:55403890-55403909 | MS.gene56999:CDS | 35.0% | |
| CCTGCCTGCAATTATATTAA+TGG | + | chr5.1:55403893-55403912 | None:intergenic | 35.0% | |
| GAAAAAATCATGTAGCCACT+GGG | + | chr5.1:55403079-55403098 | None:intergenic | 35.0% | |
| GAAAGAAATCAGCTGCTATA+AGG | + | chr5.1:55404102-55404121 | None:intergenic | 35.0% | |
| GTGATAATTGGTGTGACTAT+GGG | - | chr5.1:55402717-55402736 | MS.gene56999:intron | 35.0% | |
| TATGTCTATTCTTGCCCTTT+GGG | - | chr5.1:55404195-55404214 | MS.gene56999:CDS | 35.0% | |
| TCCCTAAAATTATCCCCATT+GGG | + | chr5.1:55403967-55403986 | None:intergenic | 35.0% | |
| TTCTGATCCACGTTTGAAAA+AGG | - | chr5.1:55404138-55404157 | MS.gene56999:CDS | 35.0% | |
| ! | CTGCTCAATATTTGTTAGAG+AGG | - | chr5.1:55402886-55402905 | MS.gene56999:intron | 35.0% |
| ! | TTTTCAGTAACAACCCCAAT+GGG | - | chr5.1:55403950-55403969 | MS.gene56999:CDS | 35.0% |
| !! | CATCAGATTTTTGAAGGGAT+GGG | - | chr5.1:55402792-55402811 | MS.gene56999:intron | 35.0% |
| !! | GTTTCACAAGTATTGGAGAT+TGG | - | chr5.1:55402678-55402697 | MS.gene56999:intron | 35.0% |
| !! | TCATCAGATTTTTGAAGGGA+TGG | - | chr5.1:55402791-55402810 | MS.gene56999:intron | 35.0% |
| !! | TCCTTATTGTGGATTTGTTG+GGG | - | chr5.1:55403137-55403156 | MS.gene56999:intron | 35.0% |
| !!! | AAAGAAGCCTTTTTCAAACG+TGG | + | chr5.1:55404148-55404167 | None:intergenic | 35.0% |
| !!! | TATTTTTAGATGTGATGCCG+CGG | + | chr5.1:55402253-55402272 | None:intergenic | 35.0% |
| AAAATCCTTCCAAGGATGAC+GGG | + | chr5.1:55402478-55402497 | None:intergenic | 40.0% | |
| AAAGCCAAAGCAGCAACTAA+AGG | + | chr5.1:55402771-55402790 | None:intergenic | 40.0% | |
| AGAAGCAGAACCCATAGTTA+AGG | + | chr5.1:55404176-55404195 | None:intergenic | 40.0% | |
| AGAGTTACTAGTCCTGAGAA+GGG | + | chr5.1:55402501-55402520 | None:intergenic | 40.0% | |
| AGGATTTAGCTATGGAACAG+TGG | - | chr5.1:55403910-55403929 | MS.gene56999:CDS | 40.0% | |
| ATATTTATAACCAGCGCCGT+CGG | - | chr5.1:55402288-55402307 | MS.gene56999:CDS | 40.0% | |
| CCCTAAAATTATCCCCATTG+GGG | + | chr5.1:55403966-55403985 | None:intergenic | 40.0% | |
| CTATGTCTATTCTTGCCCTT+TGG | - | chr5.1:55404194-55404213 | MS.gene56999:CDS | 40.0% | |
| GAAAATCCTTCCAAGGATGA+CGG | + | chr5.1:55402479-55402498 | None:intergenic | 40.0% | |
| TCCCCAACAAATCCACAATA+AGG | + | chr5.1:55403141-55403160 | None:intergenic | 40.0% | |
| TTTCAGTAACAACCCCAATG+GGG | - | chr5.1:55403951-55403970 | MS.gene56999:CDS | 40.0% | |
| ! | AAGACACGTGCTAAAAGTAC+TGG | + | chr5.1:55402324-55402343 | None:intergenic | 40.0% |
| ! | ACCCCAATGGGGATAATTTT+AGG | - | chr5.1:55403962-55403981 | MS.gene56999:CDS | 40.0% |
| ! | CCCCAATGGGGATAATTTTA+GGG | - | chr5.1:55403963-55403982 | MS.gene56999:CDS | 40.0% |
| ! | GTTTTCAGTAACAACCCCAA+TGG | - | chr5.1:55403949-55403968 | MS.gene56999:CDS | 40.0% |
| ! | TCAGGACTAGTAACTCTCAT+CGG | - | chr5.1:55402504-55402523 | MS.gene56999:intron | 40.0% |
| !! | ATTTTTGAAGGGATGGGTCT+TGG | - | chr5.1:55402798-55402817 | MS.gene56999:intron | 40.0% |
| AAAGAGTTGGAGTTGGAAGG+TGG | - | chr5.1:55402603-55402622 | MS.gene56999:intron | 45.0% | |
| GAGAAAGAGTTGGAGTTGGA+AGG | - | chr5.1:55402600-55402619 | MS.gene56999:intron | 45.0% | |
| GAGAAGGGAAAATCCTTCCA+AGG | + | chr5.1:55402486-55402505 | None:intergenic | 45.0% | |
| GAGAGTTACTAGTCCTGAGA+AGG | + | chr5.1:55402502-55402521 | None:intergenic | 45.0% | |
| TTGCAGGCAGGATTTAGCTA+TGG | - | chr5.1:55403902-55403921 | MS.gene56999:CDS | 45.0% | |
| ! | AAGGCCTTTAGTTGCTGCTT+TGG | - | chr5.1:55402764-55402783 | MS.gene56999:intron | 45.0% |
| ! | CTTTTAGCACGTGTCTTTCG+AGG | - | chr5.1:55402327-55402346 | MS.gene56999:CDS | 45.0% |
| ! | GTGAAGGAGAGTGTGAAAGA+GGG | - | chr5.1:55402625-55402644 | MS.gene56999:intron | 45.0% |
| ! | TGAAGGAGAGTGTGAAAGAG+GGG | - | chr5.1:55402626-55402645 | MS.gene56999:intron | 45.0% |
| ! | TGGAAGGATTTTCCCTTCTC+AGG | - | chr5.1:55402486-55402505 | MS.gene56999:CDS | 45.0% |
| !! | TTGTGGATTTGTTGGGGACT+TGG | - | chr5.1:55403143-55403162 | MS.gene56999:intron | 45.0% |
| !!! | TAAATTATAAATATTTTACA+TGG | - | chr5.1:55403845-55403864 | MS.gene56999:CDS | 5.0% |
| CAAGGGAATTCTTAGCCCAG+TGG | - | chr5.1:55403061-55403080 | MS.gene56999:intron | 50.0% | |
| GGGTGAGAAAGAGTTGGAGT+TGG | - | chr5.1:55402596-55402615 | MS.gene56999:intron | 50.0% | |
| TCCAACTCTTTCTCACCCAC+CGG | + | chr5.1:55402594-55402613 | None:intergenic | 50.0% | |
| TTGGAGTTGGAAGGTGGTGA+AGG | - | chr5.1:55402609-55402628 | MS.gene56999:intron | 50.0% | |
| TTTGAAGGGATGGGTCTTGG+TGG | - | chr5.1:55402801-55402820 | MS.gene56999:intron | 50.0% | |
| ! | GGTGAAGGAGAGTGTGAAAG+AGG | - | chr5.1:55402624-55402643 | MS.gene56999:intron | 50.0% |
| ! | TCTTGGTGGTTGTGTTGCTC+AGG | - | chr5.1:55402815-55402834 | MS.gene56999:intron | 50.0% |
| AGAGAAACCTCATGCCGCGA+CGG | - | chr5.1:55402225-55402244 | MS.gene56999:CDS | 55.0% | |
| CGCAATTCTCGCGCTCTTTG+TGG | - | chr5.1:55402527-55402546 | MS.gene56999:intron | 55.0% | |
| AACCAGCGCCGTCGGTATGA+CGG | - | chr5.1:55402296-55402315 | MS.gene56999:CDS | 60.0% | |
| ACGTGGCATCCCGTCATCCT+TGG | - | chr5.1:55402466-55402485 | MS.gene56999:CDS | 60.0% | |
| ATACTGCCCGTGCTCCACGT+GGG | + | chr5.1:55402568-55402587 | None:intergenic | 60.0% | |
| GCCGGTGGGTGAGAAAGAGT+TGG | - | chr5.1:55402590-55402609 | MS.gene56999:intron | 60.0% | |
| GGCATCCCGTCATCCTTGGA+AGG | - | chr5.1:55402470-55402489 | MS.gene56999:CDS | 60.0% | |
| TACTGGCGCCGTCATACCGA+CGG | + | chr5.1:55402307-55402326 | None:intergenic | 60.0% | |
| ! | GTCTGGGAGGACGTGGACTA+GGG | + | chr5.1:55402421-55402440 | None:intergenic | 60.0% |
| !! | AAGGATGACGGGATGCCACG+TGG | + | chr5.1:55402467-55402486 | None:intergenic | 60.0% |
| CATACTGCCCGTGCTCCACG+TGG | + | chr5.1:55402569-55402588 | None:intergenic | 65.0% | |
| CCACGTGGGAACTCGCTACG+AGG | + | chr5.1:55402554-55402573 | None:intergenic | 65.0% | |
| CCTCGTAGCGAGTTCCCACG+TGG | - | chr5.1:55402551-55402570 | MS.gene56999:intron | 65.0% | |
| CGAGTTCCCACGTGGAGCAC+GGG | - | chr5.1:55402559-55402578 | MS.gene56999:intron | 65.0% | |
| CGTCTGGGAGGACGTGGACT+AGG | + | chr5.1:55402422-55402441 | None:intergenic | 65.0% | |
| GCGAGTTCCCACGTGGAGCA+CGG | - | chr5.1:55402558-55402577 | MS.gene56999:intron | 65.0% | |
| ! | AGCACTCGCTGACTGCCACG+TGG | - | chr5.1:55402449-55402468 | MS.gene56999:CDS | 65.0% |
| ! | CGAGTGCTGCGTAGGCGTCT+GGG | + | chr5.1:55402437-55402456 | None:intergenic | 65.0% |
| ! | GCAGTCAGCGAGTGCTGCGT+AGG | + | chr5.1:55402445-55402464 | None:intergenic | 65.0% |
| CGTAGGCGTCTGGGAGGACG+TGG | + | chr5.1:55402428-55402447 | None:intergenic | 70.0% | |
| GGAGCACGGGCAGTATGCGC+CGG | - | chr5.1:55402572-55402591 | MS.gene56999:intron | 70.0% | |
| GTGCTGCGTAGGCGTCTGGG+AGG | + | chr5.1:55402434-55402453 | None:intergenic | 70.0% | |
| ! | CACGGGCAGTATGCGCCGGT+GGG | - | chr5.1:55402576-55402595 | MS.gene56999:intron | 70.0% |
| ! | GCGAGTGCTGCGTAGGCGTC+TGG | + | chr5.1:55402438-55402457 | None:intergenic | 70.0% |
| CGCCGTCATACCGACGGCGC+TGG | + | chr5.1:55402301-55402320 | None:intergenic | 75.0% | |
| GCACGGGCAGTATGCGCCGG+TGG | - | chr5.1:55402575-55402594 | MS.gene56999:intron | 75.0% | |
| ! | CTCATGCCGCGACGGCGCCG+CGG | - | chr5.1:55402233-55402252 | MS.gene56999:CDS | 80.0% |
| ! | GTGATGCCGCGGCGCCGTCG+CGG | + | chr5.1:55402242-55402261 | None:intergenic | 80.0% |
| ! | CGCGGCGCCGTCGCGGCATG+AGG | + | chr5.1:55402235-55402254 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 55402195 | 55404222 | 55402195 | ID=MS.gene56999 |
| chr5.1 | mRNA | 55402195 | 55404222 | 55402195 | ID=MS.gene56999.t1;Parent=MS.gene56999 |
| chr5.1 | exon | 55403581 | 55404222 | 55403581 | ID=MS.gene56999.t1.exon1;Parent=MS.gene56999.t1 |
| chr5.1 | CDS | 55403581 | 55404222 | 55403581 | ID=cds.MS.gene56999.t1;Parent=MS.gene56999.t1 |
| chr5.1 | exon | 55402195 | 55402509 | 55402195 | ID=MS.gene56999.t1.exon2;Parent=MS.gene56999.t1 |
| chr5.1 | CDS | 55402195 | 55402509 | 55402195 | ID=cds.MS.gene56999.t1;Parent=MS.gene56999.t1 |
| Gene Sequence |
| Protein sequence |
