Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50197.t1 | XP_003615761.1 | 98.1 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 4.50E-168 | 600.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50197.t1 | O64738 | 68.1 | 329 | 84 | 3 | 11 | 318 | 13 | 341 | 2.5e-119 | 429.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50197.t1 | G7K740 | 98.1 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 3.2e-168 | 600.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045723 | MS.gene50197 | PPI |
| MS.gene040467 | MS.gene50197 | PPI |
| MS.gene044300 | MS.gene50197 | PPI |
| MS.gene25737 | MS.gene50197 | PPI |
| MS.gene071270 | MS.gene50197 | PPI |
| MS.gene50197 | MS.gene25738 | PPI |
| MS.gene50197 | MS.gene69773 | PPI |
| MS.gene50197 | MS.gene70500 | PPI |
| MS.gene50197 | MS.gene70499 | PPI |
| MS.gene69772 | MS.gene50197 | PPI |
| MS.gene066193 | MS.gene50197 | PPI |
| MS.gene044303 | MS.gene50197 | PPI |
| MS.gene82418 | MS.gene50197 | PPI |
| MS.gene56439 | MS.gene50197 | PPI |
| MS.gene70495 | MS.gene50197 | PPI |
| MS.gene50197 | MS.gene69774 | PPI |
| MS.gene067575 | MS.gene50197 | PPI |
| MS.gene98090 | MS.gene50197 | PPI |
| MS.gene50197 | MS.gene038972 | PPI |
| MS.gene071273 | MS.gene50197 | PPI |
| MS.gene000434 | MS.gene50197 | PPI |
| MS.gene50197 | MS.gene73898 | PPI |
| MS.gene50197 | MS.gene90024 | PPI |
| MS.gene62494 | MS.gene50197 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50197.t1 | MTR_5g071990 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0.0 | 634 |
| MS.gene50197.t1 | MTR_2g064310 | 40.059 | 337 | 170 | 7 | 5 | 318 | 31 | 358 | 6.81e-78 | 242 |
| MS.gene50197.t1 | MTR_4g083570 | 41.590 | 327 | 159 | 8 | 13 | 318 | 35 | 350 | 5.10e-77 | 239 |
| MS.gene50197.t1 | MTR_3g081640 | 39.306 | 346 | 174 | 7 | 1 | 318 | 24 | 361 | 1.05e-73 | 231 |
| MS.gene50197.t1 | MTR_3g082050 | 42.593 | 324 | 158 | 7 | 16 | 318 | 56 | 372 | 1.09e-73 | 231 |
| MS.gene50197.t1 | MTR_3g082050 | 42.593 | 324 | 158 | 7 | 16 | 318 | 33 | 349 | 1.38e-73 | 231 |
| MS.gene50197.t1 | MTR_3g082050 | 42.593 | 324 | 158 | 7 | 16 | 318 | 61 | 377 | 1.63e-73 | 231 |
| MS.gene50197.t1 | MTR_8g105030 | 40.909 | 330 | 167 | 8 | 4 | 312 | 25 | 347 | 7.30e-71 | 225 |
| MS.gene50197.t1 | MTR_3g081580 | 40.549 | 328 | 158 | 8 | 1 | 304 | 24 | 338 | 2.57e-70 | 223 |
| MS.gene50197.t1 | MTR_3g081690 | 42.434 | 304 | 141 | 7 | 16 | 298 | 33 | 323 | 1.00e-67 | 215 |
| MS.gene50197.t1 | MTR_3g081690 | 42.434 | 304 | 141 | 7 | 16 | 298 | 56 | 346 | 1.13e-67 | 216 |
| MS.gene50197.t1 | MTR_1g016120 | 37.838 | 370 | 171 | 9 | 3 | 318 | 10 | 374 | 4.02e-66 | 212 |
| MS.gene50197.t1 | MTR_6g007687 | 39.571 | 326 | 180 | 7 | 3 | 316 | 25 | 345 | 5.91e-66 | 211 |
| MS.gene50197.t1 | MTR_3g104400 | 37.222 | 360 | 162 | 8 | 15 | 318 | 14 | 365 | 2.41e-62 | 202 |
| MS.gene50197.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 56 | 188 | 7.04e-46 | 155 |
| MS.gene50197.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 100 | 232 | 5.03e-45 | 154 |
| MS.gene50197.t1 | MTR_3g081690 | 53.521 | 142 | 57 | 2 | 157 | 298 | 78 | 210 | 6.07e-45 | 153 |
| MS.gene50197.t1 | MTR_3g058630 | 23.323 | 313 | 201 | 9 | 25 | 317 | 55 | 348 | 2.80e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50197.t1 | AT2G30080 | 68.693 | 329 | 82 | 3 | 11 | 318 | 13 | 341 | 2.89e-161 | 453 |
| MS.gene50197.t1 | AT1G31260 | 39.104 | 335 | 163 | 7 | 14 | 318 | 41 | 364 | 2.48e-71 | 225 |
| MS.gene50197.t1 | AT2G04032 | 38.973 | 331 | 174 | 9 | 10 | 318 | 41 | 365 | 1.78e-70 | 223 |
| MS.gene50197.t1 | AT2G32270 | 41.479 | 311 | 174 | 7 | 8 | 318 | 37 | 339 | 7.38e-68 | 216 |
| MS.gene50197.t1 | AT4G19690 | 39.873 | 316 | 168 | 7 | 15 | 318 | 42 | 347 | 1.09e-67 | 215 |
| MS.gene50197.t1 | AT3G12750 | 39.490 | 314 | 169 | 6 | 21 | 318 | 47 | 355 | 1.01e-66 | 213 |
| MS.gene50197.t1 | AT1G05300 | 39.104 | 335 | 174 | 8 | 8 | 318 | 32 | 360 | 1.79e-66 | 213 |
| MS.gene50197.t1 | AT4G19680 | 36.503 | 326 | 187 | 7 | 8 | 318 | 30 | 350 | 3.97e-65 | 209 |
| MS.gene50197.t1 | AT5G62160 | 36.970 | 330 | 178 | 7 | 10 | 318 | 35 | 355 | 1.50e-63 | 205 |
| MS.gene50197.t1 | AT1G10970 | 51.553 | 161 | 75 | 2 | 158 | 318 | 217 | 374 | 7.99e-48 | 165 |
| MS.gene50197.t1 | AT1G10970 | 33.835 | 133 | 83 | 3 | 1 | 130 | 1 | 131 | 5.10e-13 | 69.3 |
| MS.gene50197.t1 | AT1G10970 | 51.553 | 161 | 75 | 2 | 158 | 318 | 217 | 374 | 7.99e-48 | 165 |
| MS.gene50197.t1 | AT1G10970 | 33.835 | 133 | 83 | 3 | 1 | 130 | 1 | 131 | 5.10e-13 | 69.3 |
| MS.gene50197.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 258 | 415 | 3.03e-45 | 159 |
| MS.gene50197.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 27 | 164 | 1.22e-14 | 74.3 |
| MS.gene50197.t1 | AT1G60960 | 51.553 | 161 | 75 | 2 | 158 | 318 | 268 | 425 | 3.85e-45 | 159 |
| MS.gene50197.t1 | AT1G60960 | 35.000 | 140 | 86 | 3 | 1 | 137 | 37 | 174 | 1.54e-14 | 74.3 |
| MS.gene50197.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 186 | 344 | 7.23e-45 | 156 |
| MS.gene50197.t1 | AT4G33020 | 50.000 | 162 | 78 | 2 | 157 | 318 | 233 | 391 | 2.02e-44 | 156 |
| MS.gene50197.t1 | AT4G33020 | 35.156 | 128 | 76 | 3 | 3 | 130 | 24 | 144 | 1.89e-12 | 67.8 |
| MS.gene50197.t1 | AT4G19680 | 32.883 | 222 | 132 | 5 | 8 | 214 | 30 | 249 | 1.44e-37 | 134 |
| MS.gene50197.t1 | AT1G05300 | 34.914 | 232 | 122 | 7 | 8 | 214 | 32 | 259 | 2.22e-31 | 119 |
| MS.gene50197.t1 | AT4G19690 | 37.273 | 110 | 67 | 2 | 15 | 124 | 42 | 149 | 8.09e-17 | 78.2 |
| MS.gene50197.t1 | AT1G60960 | 35.252 | 139 | 85 | 3 | 1 | 136 | 37 | 173 | 7.32e-15 | 74.3 |
| MS.gene50197.t1 | AT1G55910 | 24.917 | 301 | 195 | 13 | 24 | 317 | 48 | 324 | 2.48e-14 | 72.8 |
Find 78 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATCCACGTTTGAAAA+AGG | 0.222055 | 5.2:-60560001 | MS.gene50197:CDS |
| CCTTCAATTATTAAGGCATT+AGG | 0.237081 | 5.2:+60560114 | None:intergenic |
| CTCAAAATGTTTGTACTATA+AGG | 0.241674 | 5.2:-60561429 | MS.gene50197:CDS |
| ATATTTCATTCAGTTATAAT+TGG | 0.259940 | 5.2:-60561469 | MS.gene50197:CDS |
| AGTTATAATTGGTGTGACTA+TGG | 0.261183 | 5.2:-60561458 | MS.gene50197:CDS |
| GCAAGTGCTGCGTAGGCGTC+TGG | 0.267725 | 5.2:+60561739 | None:intergenic |
| TTACTAGGTTCAATTTCTTC+TGG | 0.279901 | 5.2:-60560090 | MS.gene50197:CDS |
| CTATGTCTATTCTTGCCCTT+TGG | 0.281832 | 5.2:-60559945 | MS.gene50197:CDS |
| TAGTAACCCTTCAATTATTA+AGG | 0.283235 | 5.2:+60560107 | None:intergenic |
| TATGTCTATTCTTGCCCTTT+GGG | 0.306616 | 5.2:-60559944 | MS.gene50197:CDS |
| AAGATTGGTTTCACAGGTAT+TGG | 0.310916 | 5.2:-60561503 | MS.gene50197:CDS |
| CGCAATTCTCGCGCTCTTTG+TGG | 0.324509 | 5.2:-60561647 | MS.gene50197:CDS |
| CTTCAATTATTAAGGCATTA+GGG | 0.325767 | 5.2:+60560115 | None:intergenic |
| GAGAAAGAGTTTGAGTTAGA+AGG | 0.347941 | 5.2:-60561574 | MS.gene50197:CDS |
| AAGGCCTTTAGTTGCTGCTT+TGG | 0.349354 | 5.2:-60561410 | MS.gene50197:CDS |
| GTTTCACAGGTATTGGAGAT+TGG | 0.361426 | 5.2:-60561496 | MS.gene50197:CDS |
| GAAAGAAATCAGCTGCTATT+AGG | 0.366337 | 5.2:+60560040 | None:intergenic |
| TCCCTAAAATTATCCCCATT+GGG | 0.383656 | 5.2:+60560175 | None:intergenic |
| CCTAATGCCTTAATAATTGA+AGG | 0.388464 | 5.2:-60560114 | MS.gene50197:CDS |
| AATTAAATTGAAACAAAGAT+TGG | 0.400504 | 5.2:-60561518 | MS.gene50197:CDS |
| TTTGAAGGGATGGGTCTTGG+TGG | 0.410362 | 5.2:-60561373 | MS.gene50197:CDS |
| TTTCACAGGTATTGGAGATT+GGG | 0.410797 | 5.2:-60561495 | MS.gene50197:CDS |
| TTAATAATTGAAGGGTTACT+AGG | 0.416508 | 5.2:-60560105 | MS.gene50197:CDS |
| GGTGAAGGAGAGTGTGAAAG+AGG | 0.438001 | 5.2:-60561550 | MS.gene50197:CDS |
| ATCCCTAAAATTATCCCCAT+TGG | 0.445704 | 5.2:+60560174 | None:intergenic |
| TTCTGGAATTCTTATTTACA+TGG | 0.449132 | 5.2:-60560073 | MS.gene50197:CDS |
| GTGAAGGAGAGTGTGAAAGA+GGG | 0.456968 | 5.2:-60561549 | MS.gene50197:CDS |
| ATGATATTATTCTCATTGAC+TGG | 0.468904 | 5.2:-60560153 | MS.gene50197:CDS |
| TTAATAAAATGTTTCGCGGC+AGG | 0.470699 | 5.2:-60561796 | MS.gene50197:CDS |
| GTCTGGGAGGACGTGGACTA+AGG | 0.471807 | 5.2:+60561756 | None:intergenic |
| AGAAGCAGAACCCATAGTTA+AGG | 0.473744 | 5.2:+60559966 | None:intergenic |
| TCTTGGTGGTTGTGTTGCTC+AGG | 0.475918 | 5.2:-60561359 | MS.gene50197:intron |
| ACGTGGCATCCCGTCATCCT+TGG | 0.476790 | 5.2:-60561708 | MS.gene50197:CDS |
| GTTATAATTGGTGTGACTAT+GGG | 0.486976 | 5.2:-60561457 | MS.gene50197:CDS |
| CGTAGGCGTCTGGGAGGACG+TGG | 0.492002 | 5.2:+60561749 | None:intergenic |
| AAAGAGTTTGAGTTAGAAGG+TGG | 0.499910 | 5.2:-60561571 | MS.gene50197:CDS |
| TTTGAGTTAGAAGGTGGTGA+AGG | 0.507250 | 5.2:-60561565 | MS.gene50197:CDS |
| CGAGTTCCCACGTGGAGCAC+GGG | 0.508291 | 5.2:-60561615 | MS.gene50197:CDS |
| CAAGTGCTGCGTAGGCGTCT+GGG | 0.509570 | 5.2:+60561740 | None:intergenic |
| TGAAGGAGAGTGTGAAAGAG+GGG | 0.514863 | 5.2:-60561548 | MS.gene50197:CDS |
| GAAACAAAGATTGGTTTCAC+AGG | 0.529892 | 5.2:-60561509 | MS.gene50197:CDS |
| ACTAATGCTCTGTCGTATAA+CGG | 0.530063 | 5.2:+60561820 | None:intergenic |
| AGTATTAATAAAATGTTTCG+CGG | 0.530711 | 5.2:-60561800 | MS.gene50197:CDS |
| GCAGTCAGCAAGTGCTGCGT+AGG | 0.534795 | 5.2:+60561732 | None:intergenic |
| GCGAGTTCCCACGTGGAGCA+CGG | 0.541209 | 5.2:-60561616 | MS.gene50197:CDS |
| AAGACACGTGCTAAAAGTAC+TGG | 0.544421 | 5.2:+60561853 | None:intergenic |
| TTGCAGGCAGGATTTAGCTA+TGG | 0.549653 | 5.2:-60560237 | MS.gene50197:intron |
| AAAATCCTTCCAAGGATGAC+GGG | 0.549940 | 5.2:+60561699 | None:intergenic |
| AACTAGCGCCGTCGGTATGA+CGG | 0.550027 | 5.2:-60561878 | MS.gene50197:CDS |
| GAAAATCCTTCCAAGGATGA+CGG | 0.562279 | 5.2:+60561698 | None:intergenic |
| AAAGCCAAAGCAGCAACTAA+AGG | 0.564655 | 5.2:+60561406 | None:intergenic |
| GAGAGTTACTAGTCCTGAGA+AGG | 0.569392 | 5.2:+60561675 | None:intergenic |
| CTAATGCCTTAATAATTGAA+GGG | 0.571906 | 5.2:-60560113 | MS.gene50197:CDS |
| GTGATGCCGCGACGCCGTCG+CGG | 0.574554 | 5.2:+60561935 | None:intergenic |
| TTCATGCCGCGACGGCGTCG+CGG | 0.575527 | 5.2:-60561941 | MS.gene50197:CDS |
| GCACGGGCAGTATACGCCGG+TGG | 0.582141 | 5.2:-60561599 | MS.gene50197:CDS |
| TATACTGCCCGTGCTCCACG+TGG | 0.587559 | 5.2:+60561608 | None:intergenic |
| TCAAACTCTTTCTCACCCAC+CGG | 0.587859 | 5.2:+60561583 | None:intergenic |
| GAGAAGGGAAAATCCTTCCA+AGG | 0.600619 | 5.2:+60561691 | None:intergenic |
| GGCATCCCGTCATCCTTGGA+AGG | 0.601495 | 5.2:-60561704 | MS.gene50197:CDS |
| ATATTCATAACTAGCGCCGT+CGG | 0.602467 | 5.2:-60561886 | MS.gene50197:CDS |
| TACTGGCGCCGTCATACCGA+CGG | 0.603515 | 5.2:+60561870 | None:intergenic |
| AGAGTTACTAGTCCTGAGAA+GGG | 0.607003 | 5.2:+60561676 | None:intergenic |
| CCCTAAAATTATCCCCATTG+GGG | 0.615298 | 5.2:+60560176 | None:intergenic |
| TCAGGACTAGTAACTCTCAT+CGG | 0.616673 | 5.2:-60561670 | MS.gene50197:CDS |
| AGAGAAACTTCATGCCGCGA+CGG | 0.628357 | 5.2:-60561949 | MS.gene50197:CDS |
| CACGGGCAGTATACGCCGGT+GGG | 0.631421 | 5.2:-60561598 | MS.gene50197:CDS |
| TAGTTATGAATATGACAAAG+AGG | 0.631556 | 5.2:+60561896 | None:intergenic |
| AGTTATGAATATGACAAAGA+GGG | 0.635092 | 5.2:+60561897 | None:intergenic |
| AGCACTTGCTGACTGCCACG+TGG | 0.661074 | 5.2:-60561725 | MS.gene50197:CDS |
| AGGATTTAGCTATGGAACAG+TGG | 0.672083 | 5.2:-60560229 | MS.gene50197:CDS |
| ATACTGCCCGTGCTCCACGT+GGG | 0.674153 | 5.2:+60561609 | None:intergenic |
| CCACGTGGGAACTCGCTACG+AGG | 0.680081 | 5.2:+60561623 | None:intergenic |
| GTGCTGCGTAGGCGTCTGGG+AGG | 0.680541 | 5.2:+60561743 | None:intergenic |
| CCTCGTAGCGAGTTCCCACG+TGG | 0.684446 | 5.2:-60561623 | MS.gene50197:CDS |
| AAGGATGACGGGATGCCACG+TGG | 0.691539 | 5.2:+60561710 | None:intergenic |
| GGAGCACGGGCAGTATACGC+CGG | 0.704052 | 5.2:-60561602 | MS.gene50197:CDS |
| TTTCAGTAACAACCCCAATG+GGG | 0.728298 | 5.2:-60560188 | MS.gene50197:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATTTATAATTTAAA+AGG | + | chr5.2:60561624-60561643 | None:intergenic | 0.0% |
| !! | AAAATAATATAGTAATATTG+AGG | - | chr5.2:60561455-60561474 | MS.gene50197:CDS | 10.0% |
| !!! | AATGATAAAAAAACTTTTAA+CGG | + | chr5.2:60561335-60561354 | None:intergenic | 10.0% |
| !! | AATTAAATTGAAACAAAGAT+TGG | - | chr5.2:60560400-60560419 | MS.gene50197:intron | 15.0% |
| !! | ATATTTCATTCAGTTATAAT+TGG | - | chr5.2:60560449-60560468 | MS.gene50197:intron | 15.0% |
| !! | ATGAAAGATAAAAAGTTAAT+TGG | - | chr5.2:60560657-60560676 | MS.gene50197:intron | 15.0% |
| !! | TTAACAATAAAAAGATGTAA+TGG | - | chr5.2:60561137-60561156 | MS.gene50197:intron | 15.0% |
| !!! | AAATTTTCCTAAAAGAATTA+TGG | + | chr5.2:60561204-60561223 | None:intergenic | 15.0% |
| !!! | AATTTTCCTAAAAGAATTAT+GGG | + | chr5.2:60561203-60561222 | None:intergenic | 15.0% |
| !!! | TAATGAATTTTGTAGAATTA+CGG | - | chr5.2:60560693-60560712 | MS.gene50197:intron | 15.0% |
| !! | AAAAGTTGTTTAAAAACACA+TGG | + | chr5.2:60561359-60561378 | None:intergenic | 20.0% |
| !! | AAAGATGTAATGGTTTAAAA+TGG | - | chr5.2:60561147-60561166 | MS.gene50197:intron | 20.0% |
| !! | AATATAGTAATATTGAGGAT+TGG | - | chr5.2:60561460-60561479 | MS.gene50197:CDS | 20.0% |
| !! | AATGTCAAAATCTTATCATT+AGG | - | chr5.2:60561551-60561570 | MS.gene50197:CDS | 20.0% |
| !! | AGTATTAATAAAATGTTTCG+CGG | - | chr5.2:60560118-60560137 | MS.gene50197:CDS | 20.0% |
| !! | ATATAGTAATATTGAGGATT+GGG | - | chr5.2:60561461-60561480 | MS.gene50197:CDS | 20.0% |
| !!! | CATATGCTATAATTTTAAGA+TGG | + | chr5.2:60561516-60561535 | None:intergenic | 20.0% |
| !!! | TTTTAAACAACTTCTTATGT+GGG | + | chr5.2:60561232-60561251 | None:intergenic | 20.0% |
| !!! | TTTTTAAACAACTTCTTATG+TGG | + | chr5.2:60561233-60561252 | None:intergenic | 20.0% |
| ! | AAGTAAAGCAATAGAAAGAA+AGG | + | chr5.2:60560598-60560617 | None:intergenic | 25.0% |
| ! | AGTTATGAATATGACAAAGA+GGG | + | chr5.2:60560024-60560043 | None:intergenic | 25.0% |
| ! | ATCATTAGGTTCACATATAA+TGG | - | chr5.2:60561565-60561584 | MS.gene50197:CDS | 25.0% |
| ! | ATCTTACCATTAATAATTGC+AGG | - | chr5.2:60561665-60561684 | MS.gene50197:CDS | 25.0% |
| ! | ATGATATTATTCTCATTGAC+TGG | - | chr5.2:60561765-60561784 | MS.gene50197:CDS | 25.0% |
| ! | CTAATGCCTTAATAATTGAA+GGG | - | chr5.2:60561805-60561824 | MS.gene50197:CDS | 25.0% |
| ! | CTCAAAATGTTTGTACTATA+AGG | - | chr5.2:60560489-60560508 | MS.gene50197:intron | 25.0% |
| ! | TAGTAACCCTTCAATTATTA+AGG | + | chr5.2:60561814-60561833 | None:intergenic | 25.0% |
| ! | TAGTTATGAATATGACAAAG+AGG | + | chr5.2:60560025-60560044 | None:intergenic | 25.0% |
| ! | TCATTAGGTTCACATATAAT+GGG | - | chr5.2:60561566-60561585 | MS.gene50197:CDS | 25.0% |
| ! | TTAATAATTGAAGGGTTACT+AGG | - | chr5.2:60561813-60561832 | MS.gene50197:CDS | 25.0% |
| ! | TTGACTGCAGTTTATTATAT+GGG | - | chr5.2:60561106-60561125 | MS.gene50197:intron | 25.0% |
| ! | TTGTAAGTGAAAATAATACG+AGG | + | chr5.2:60560792-60560811 | None:intergenic | 25.0% |
| ! | TTTGACTGCAGTTTATTATA+TGG | - | chr5.2:60561105-60561124 | MS.gene50197:intron | 25.0% |
| !! | CGTATTATTTTCACTTACAA+GGG | - | chr5.2:60560792-60560811 | MS.gene50197:intron | 25.0% |
| !! | CTTCAATTATTAAGGCATTA+GGG | + | chr5.2:60561806-60561825 | None:intergenic | 25.0% |
| !! | CTTTTCATCAGATTTTTGAA+GGG | - | chr5.2:60560531-60560550 | MS.gene50197:intron | 25.0% |
| !! | TCGTATTATTTTCACTTACA+AGG | - | chr5.2:60560791-60560810 | MS.gene50197:intron | 25.0% |
| !!! | AGTTAATTGGATGTTTTGAT+TGG | - | chr5.2:60560670-60560689 | MS.gene50197:intron | 25.0% |
| !!! | TTCCTTATTGTTGATTTGTT+GGG | - | chr5.2:60560884-60560903 | MS.gene50197:intron | 25.0% |
| !!! | TTCTGGAATTCTTATTTACA+TGG | - | chr5.2:60561845-60561864 | MS.gene50197:CDS | 25.0% |
| !!! | TTTCCTTATTGTTGATTTGT+TGG | - | chr5.2:60560883-60560902 | MS.gene50197:intron | 25.0% |
| ACCATCTAAACCATTAGAAT+GGG | + | chr5.2:60561421-60561440 | None:intergenic | 30.0% | |
| AGTTATAATTGGTGTGACTA+TGG | - | chr5.2:60560460-60560479 | MS.gene50197:intron | 30.0% | |
| ATACAAGTACATCTATTGAG+TGG | + | chr5.2:60561029-60561048 | None:intergenic | 30.0% | |
| CCTAATGCCTTAATAATTGA+AGG | - | chr5.2:60561804-60561823 | MS.gene50197:CDS | 30.0% | |
| CTAAAAGAATTATGGGTGAA+AGG | + | chr5.2:60561196-60561215 | None:intergenic | 30.0% | |
| GTTATAATTGGTGTGACTAT+GGG | - | chr5.2:60560461-60560480 | MS.gene50197:intron | 30.0% | |
| TGTCAAGAAAATGAAAGAGT+AGG | + | chr5.2:60560988-60561007 | None:intergenic | 30.0% | |
| TTACTAGGTTCAATTTCTTC+TGG | - | chr5.2:60561828-60561847 | MS.gene50197:CDS | 30.0% | |
| TTCTAAACGTGTAATGATGT+TGG | - | chr5.2:60560844-60560863 | MS.gene50197:intron | 30.0% | |
| TTGTAGTTAACTATCGTTAG+AGG | + | chr5.2:60561275-60561294 | None:intergenic | 30.0% | |
| ! | ATATAATGGGACAACAAGAA+TGG | - | chr5.2:60561579-60561598 | MS.gene50197:CDS | 30.0% |
| ! | CCTTCAATTATTAAGGCATT+AGG | + | chr5.2:60561807-60561826 | None:intergenic | 30.0% |
| ! | CTTTCACCCATAATTCTTTT+AGG | - | chr5.2:60561194-60561213 | MS.gene50197:intron | 30.0% |
| ! | GCTTTTCATCAGATTTTTGA+AGG | - | chr5.2:60560530-60560549 | MS.gene50197:intron | 30.0% |
| ! | TCTTTTGTTGCCTTAACTAT+GGG | - | chr5.2:60561942-60561961 | MS.gene50197:CDS | 30.0% |
| ! | TGATGTTGGAGATGATTTTA+TGG | - | chr5.2:60560858-60560877 | MS.gene50197:intron | 30.0% |
| ! | TTCTTTTGTTGCCTTAACTA+TGG | - | chr5.2:60561941-60561960 | MS.gene50197:CDS | 30.0% |
| !! | TCCTTATTGTTGATTTGTTG+GGG | - | chr5.2:60560885-60560904 | MS.gene50197:intron | 30.0% |
| AAACTGCAGTCAAATGACAT+TGG | + | chr5.2:60561099-60561118 | None:intergenic | 35.0% | |
| ACCCATTCTAATGGTTTAGA+TGG | - | chr5.2:60561417-60561436 | MS.gene50197:CDS | 35.0% | |
| ACTAATGCTCTGTCGTATAA+CGG | + | chr5.2:60560101-60560120 | None:intergenic | 35.0% | |
| AGAAAAAATCATGTAGCCAC+TGG | + | chr5.2:60560828-60560847 | None:intergenic | 35.0% | |
| ATCCCTAAAATTATCCCCAT+TGG | + | chr5.2:60561747-60561766 | None:intergenic | 35.0% | |
| ATCCTGCCTGCAATTATTAA+TGG | + | chr5.2:60561674-60561693 | None:intergenic | 35.0% | |
| GAAAAAATCATGTAGCCACT+GGG | + | chr5.2:60560827-60560846 | None:intergenic | 35.0% | |
| GAAAGAAATCAGCTGCTATT+AGG | + | chr5.2:60561881-60561900 | None:intergenic | 35.0% | |
| GACCATCTAAACCATTAGAA+TGG | + | chr5.2:60561422-60561441 | None:intergenic | 35.0% | |
| TACCATTAATAATTGCAGGC+AGG | - | chr5.2:60561669-60561688 | MS.gene50197:CDS | 35.0% | |
| TATGTCTATTCTTGCCCTTT+GGG | - | chr5.2:60561974-60561993 | MS.gene50197:CDS | 35.0% | |
| TCCCCAACAAATCAACAATA+AGG | + | chr5.2:60560889-60560908 | None:intergenic | 35.0% | |
| TCCCTAAAATTATCCCCATT+GGG | + | chr5.2:60561746-60561765 | None:intergenic | 35.0% | |
| TTAATAAAATGTTTCGCGGC+AGG | - | chr5.2:60560122-60560141 | MS.gene50197:CDS | 35.0% | |
| TTCTGATCCACGTTTGAAAA+AGG | - | chr5.2:60561917-60561936 | MS.gene50197:CDS | 35.0% | |
| ! | AAACCATTAGAATGGGTTTG+TGG | + | chr5.2:60561414-60561433 | None:intergenic | 35.0% |
| ! | AAAGAGTTTGAGTTAGAAGG+TGG | - | chr5.2:60560347-60560366 | MS.gene50197:intron | 35.0% |
| ! | AACCATTAGAATGGGTTTGT+GGG | + | chr5.2:60561413-60561432 | None:intergenic | 35.0% |
| ! | CTGCTCAATATTTGTTAGAG+AGG | - | chr5.2:60560630-60560649 | MS.gene50197:intron | 35.0% |
| ! | GAGAAAGAGTTTGAGTTAGA+AGG | - | chr5.2:60560344-60560363 | MS.gene50197:intron | 35.0% |
| ! | TTCATGACAGAACTCGATTT+TGG | - | chr5.2:60560957-60560976 | MS.gene50197:intron | 35.0% |
| ! | TTTTCAGTAACAACCCCAAT+GGG | - | chr5.2:60561729-60561748 | MS.gene50197:CDS | 35.0% |
| !! | AAGATTGGTTTCACAGGTAT+TGG | - | chr5.2:60560415-60560434 | MS.gene50197:intron | 35.0% |
| !! | CATCAGATTTTTGAAGGGAT+GGG | - | chr5.2:60560536-60560555 | MS.gene50197:intron | 35.0% |
| !! | GAAACAAAGATTGGTTTCAC+AGG | - | chr5.2:60560409-60560428 | MS.gene50197:intron | 35.0% |
| !! | TCATCAGATTTTTGAAGGGA+TGG | - | chr5.2:60560535-60560554 | MS.gene50197:intron | 35.0% |
| !! | TTTCACAGGTATTGGAGATT+GGG | - | chr5.2:60560423-60560442 | MS.gene50197:intron | 35.0% |
| !!! | AAAGAAGCCTTTTTCAAACG+TGG | + | chr5.2:60561927-60561946 | None:intergenic | 35.0% |
| AAAATCCTTCCAAGGATGAC+GGG | + | chr5.2:60560222-60560241 | None:intergenic | 40.0% | |
| AAAGCCAAAGCAGCAACTAA+AGG | + | chr5.2:60560515-60560534 | None:intergenic | 40.0% | |
| AGAAGCAGAACCCATAGTTA+AGG | + | chr5.2:60561955-60561974 | None:intergenic | 40.0% | |
| AGAGTTACTAGTCCTGAGAA+GGG | + | chr5.2:60560245-60560264 | None:intergenic | 40.0% | |
| AGGATTTAGCTATGGAACAG+TGG | - | chr5.2:60561689-60561708 | MS.gene50197:CDS | 40.0% | |
| ATATTCATAACTAGCGCCGT+CGG | - | chr5.2:60560032-60560051 | MS.gene50197:CDS | 40.0% | |
| CCCTAAAATTATCCCCATTG+GGG | + | chr5.2:60561745-60561764 | None:intergenic | 40.0% | |
| CTATGTCTATTCTTGCCCTT+TGG | - | chr5.2:60561973-60561992 | MS.gene50197:CDS | 40.0% | |
| GAAAATCCTTCCAAGGATGA+CGG | + | chr5.2:60560223-60560242 | None:intergenic | 40.0% | |
| TTTCAGTAACAACCCCAATG+GGG | - | chr5.2:60561730-60561749 | MS.gene50197:CDS | 40.0% | |
| ! | AAGACACGTGCTAAAAGTAC+TGG | + | chr5.2:60560068-60560087 | None:intergenic | 40.0% |
| ! | ACCCCAATGGGGATAATTTT+AGG | - | chr5.2:60561741-60561760 | MS.gene50197:CDS | 40.0% |
| ! | CCCCAATGGGGATAATTTTA+GGG | - | chr5.2:60561742-60561761 | MS.gene50197:CDS | 40.0% |
| ! | GTTTTCAGTAACAACCCCAA+TGG | - | chr5.2:60561728-60561747 | MS.gene50197:CDS | 40.0% |
| ! | TCAGGACTAGTAACTCTCAT+CGG | - | chr5.2:60560248-60560267 | MS.gene50197:intron | 40.0% |
| ! | TTTGAGTTAGAAGGTGGTGA+AGG | - | chr5.2:60560353-60560372 | MS.gene50197:intron | 40.0% |
| !! | ATTTTTGAAGGGATGGGTCT+TGG | - | chr5.2:60560542-60560561 | MS.gene50197:intron | 40.0% |
| !! | GTTTCACAGGTATTGGAGAT+TGG | - | chr5.2:60560422-60560441 | MS.gene50197:intron | 40.0% |
| !! | TTGTTGATTTGTTGGGGACT+TGG | - | chr5.2:60560891-60560910 | MS.gene50197:intron | 40.0% |
| GAGAAGGGAAAATCCTTCCA+AGG | + | chr5.2:60560230-60560249 | None:intergenic | 45.0% | |
| GAGAGTTACTAGTCCTGAGA+AGG | + | chr5.2:60560246-60560265 | None:intergenic | 45.0% | |
| GTCCCACAAACCCATTCTAA+TGG | - | chr5.2:60561408-60561427 | MS.gene50197:CDS | 45.0% | |
| TCAAACTCTTTCTCACCCAC+CGG | + | chr5.2:60560338-60560357 | None:intergenic | 45.0% | |
| TTGCAGGCAGGATTTAGCTA+TGG | - | chr5.2:60561681-60561700 | MS.gene50197:CDS | 45.0% | |
| ! | AAGGCCTTTAGTTGCTGCTT+TGG | - | chr5.2:60560508-60560527 | MS.gene50197:intron | 45.0% |
| ! | CTTTTAGCACGTGTCTTTCG+AGG | - | chr5.2:60560071-60560090 | MS.gene50197:CDS | 45.0% |
| ! | GTGAAGGAGAGTGTGAAAGA+GGG | - | chr5.2:60560369-60560388 | MS.gene50197:intron | 45.0% |
| ! | TGAAGGAGAGTGTGAAAGAG+GGG | - | chr5.2:60560370-60560389 | MS.gene50197:intron | 45.0% |
| ! | TGGAAGGATTTTCCCTTCTC+AGG | - | chr5.2:60560230-60560249 | MS.gene50197:CDS | 45.0% |
| !!! | TAAATTATAAATATTTTACA+TGG | - | chr5.2:60561626-60561645 | MS.gene50197:CDS | 5.0% |
| AGAGAAACTTCATGCCGCGA+CGG | - | chr5.2:60559969-60559988 | MS.gene50197:CDS | 50.0% | |
| CAAGGGAATTCTTAGCCCAG+TGG | - | chr5.2:60560809-60560828 | MS.gene50197:intron | 50.0% | |
| TTTGAAGGGATGGGTCTTGG+TGG | - | chr5.2:60560545-60560564 | MS.gene50197:intron | 50.0% | |
| ! | GGTGAAGGAGAGTGTGAAAG+AGG | - | chr5.2:60560368-60560387 | MS.gene50197:intron | 50.0% |
| ! | TCTTGGTGGTTGTGTTGCTC+AGG | - | chr5.2:60560559-60560578 | MS.gene50197:intron | 50.0% |
| AACTAGCGCCGTCGGTATGA+CGG | - | chr5.2:60560040-60560059 | MS.gene50197:CDS | 55.0% | |
| CGCAATTCTCGCGCTCTTTG+TGG | - | chr5.2:60560271-60560290 | MS.gene50197:intron | 55.0% | |
| ACGTGGCATCCCGTCATCCT+TGG | - | chr5.2:60560210-60560229 | MS.gene50197:CDS | 60.0% | |
| ATACTGCCCGTGCTCCACGT+GGG | + | chr5.2:60560312-60560331 | None:intergenic | 60.0% | |
| GGCATCCCGTCATCCTTGGA+AGG | - | chr5.2:60560214-60560233 | MS.gene50197:CDS | 60.0% | |
| TACTGGCGCCGTCATACCGA+CGG | + | chr5.2:60560051-60560070 | None:intergenic | 60.0% | |
| TATACTGCCCGTGCTCCACG+TGG | + | chr5.2:60560313-60560332 | None:intergenic | 60.0% | |
| ! | AGCACTTGCTGACTGCCACG+TGG | - | chr5.2:60560193-60560212 | MS.gene50197:CDS | 60.0% |
| ! | CAAGTGCTGCGTAGGCGTCT+GGG | + | chr5.2:60560181-60560200 | None:intergenic | 60.0% |
| ! | GCAGTCAGCAAGTGCTGCGT+AGG | + | chr5.2:60560189-60560208 | None:intergenic | 60.0% |
| ! | GTCTGGGAGGACGTGGACTA+AGG | + | chr5.2:60560165-60560184 | None:intergenic | 60.0% |
| !! | AAGGATGACGGGATGCCACG+TGG | + | chr5.2:60560211-60560230 | None:intergenic | 60.0% |
| CACGGGCAGTATACGCCGGT+GGG | - | chr5.2:60560320-60560339 | MS.gene50197:intron | 65.0% | |
| CCACGTGGGAACTCGCTACG+AGG | + | chr5.2:60560298-60560317 | None:intergenic | 65.0% | |
| CCTCGTAGCGAGTTCCCACG+TGG | - | chr5.2:60560295-60560314 | MS.gene50197:intron | 65.0% | |
| CGAGTTCCCACGTGGAGCAC+GGG | - | chr5.2:60560303-60560322 | MS.gene50197:intron | 65.0% | |
| GCGAGTTCCCACGTGGAGCA+CGG | - | chr5.2:60560302-60560321 | MS.gene50197:intron | 65.0% | |
| GGAGCACGGGCAGTATACGC+CGG | - | chr5.2:60560316-60560335 | MS.gene50197:intron | 65.0% | |
| ! | GCAAGTGCTGCGTAGGCGTC+TGG | + | chr5.2:60560182-60560201 | None:intergenic | 65.0% |
| CGTAGGCGTCTGGGAGGACG+TGG | + | chr5.2:60560172-60560191 | None:intergenic | 70.0% | |
| GCACGGGCAGTATACGCCGG+TGG | - | chr5.2:60560319-60560338 | MS.gene50197:intron | 70.0% | |
| GTGCTGCGTAGGCGTCTGGG+AGG | + | chr5.2:60560178-60560197 | None:intergenic | 70.0% | |
| TTCATGCCGCGACGGCGTCG+CGG | - | chr5.2:60559977-60559996 | MS.gene50197:CDS | 70.0% | |
| GTGATGCCGCGACGCCGTCG+CGG | + | chr5.2:60559986-60560005 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 60559939 | 60562001 | 60559939 | ID=MS.gene50197 |
| chr5.2 | mRNA | 60559939 | 60562001 | 60559939 | ID=MS.gene50197.t1;Parent=MS.gene50197 |
| chr5.2 | exon | 60561360 | 60562001 | 60561360 | ID=MS.gene50197.t1.exon1;Parent=MS.gene50197.t1 |
| chr5.2 | CDS | 60561360 | 60562001 | 60561360 | ID=cds.MS.gene50197.t1;Parent=MS.gene50197.t1 |
| chr5.2 | exon | 60559939 | 60560253 | 60559939 | ID=MS.gene50197.t1.exon2;Parent=MS.gene50197.t1 |
| chr5.2 | CDS | 60559939 | 60560253 | 60559939 | ID=cds.MS.gene50197.t1;Parent=MS.gene50197.t1 |
| Gene Sequence |
| Protein sequence |
