Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067741.t1 | XP_013455825.1 | 97.7 | 341 | 8 | 0 | 1 | 341 | 22 | 362 | 2.20E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067741.t1 | Q9ZQG9 | 64.3 | 339 | 120 | 1 | 2 | 339 | 23 | 361 | 1.0e-134 | 481.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067741.t1 | A0A072UKG4 | 97.7 | 341 | 8 | 0 | 1 | 341 | 22 | 362 | 1.6e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053912 | MS.gene067741 | 0.81757 | 3.08E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene067741 | 0.821868 | 3.21E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene067741 | 0.826969 | 2.03E-54 | -1.69E-46 |
| MS.gene057310 | MS.gene067741 | 0.810409 | 1.17E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene067741 | 0.806567 | 7.73E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene067741 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene067741 | 0.801041 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063164 | MS.gene067741 | PPI |
| MS.gene067741 | MS.gene056701 | PPI |
| MS.gene067741 | MS.gene45685 | PPI |
| MS.gene067741 | MS.gene003763 | PPI |
| MS.gene067741 | MS.gene68221 | PPI |
| MS.gene064895 | MS.gene067741 | PPI |
| MS.gene067741 | MS.gene014280 | PPI |
| MS.gene067741 | MS.gene50078 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067741.t1 | MTR_4g052970 | 97.654 | 341 | 8 | 0 | 1 | 341 | 22 | 362 | 0.0 | 684 |
| MS.gene067741.t1 | MTR_2g086530 | 67.630 | 346 | 104 | 2 | 1 | 340 | 1 | 344 | 7.36e-172 | 482 |
| MS.gene067741.t1 | MTR_2g086530 | 67.630 | 346 | 104 | 2 | 1 | 340 | 22 | 365 | 7.70e-172 | 483 |
| MS.gene067741.t1 | MTR_1g077990 | 59.062 | 320 | 130 | 1 | 7 | 326 | 30 | 348 | 7.76e-141 | 405 |
| MS.gene067741.t1 | MTR_4g084480 | 52.322 | 323 | 154 | 0 | 7 | 329 | 31 | 353 | 1.14e-126 | 369 |
| MS.gene067741.t1 | MTR_4g084480 | 52.322 | 323 | 154 | 0 | 7 | 329 | 24 | 346 | 1.30e-126 | 368 |
| MS.gene067741.t1 | MTR_4g084480 | 52.322 | 323 | 154 | 0 | 7 | 329 | 31 | 353 | 1.87e-126 | 368 |
| MS.gene067741.t1 | MTR_2g019345 | 51.553 | 322 | 155 | 1 | 5 | 326 | 21 | 341 | 6.05e-123 | 359 |
| MS.gene067741.t1 | MTR_4g114850 | 47.368 | 323 | 169 | 1 | 7 | 328 | 25 | 347 | 2.36e-109 | 323 |
| MS.gene067741.t1 | MTR_4g114850 | 47.368 | 323 | 169 | 1 | 7 | 328 | 25 | 347 | 4.00e-109 | 323 |
| MS.gene067741.t1 | MTR_4g114850 | 47.368 | 323 | 169 | 1 | 7 | 328 | 25 | 347 | 4.07e-109 | 323 |
| MS.gene067741.t1 | MTR_4g010200 | 44.675 | 338 | 186 | 1 | 7 | 343 | 32 | 369 | 6.76e-109 | 323 |
| MS.gene067741.t1 | MTR_3g080410 | 46.866 | 335 | 166 | 5 | 4 | 329 | 22 | 353 | 4.35e-99 | 297 |
| MS.gene067741.t1 | MTR_4g069940 | 45.625 | 320 | 173 | 1 | 8 | 326 | 29 | 348 | 5.59e-97 | 295 |
| MS.gene067741.t1 | MTR_1g056640 | 47.059 | 323 | 166 | 4 | 7 | 326 | 37 | 357 | 3.13e-96 | 294 |
| MS.gene067741.t1 | MTR_5g085580 | 46.483 | 327 | 168 | 4 | 4 | 326 | 21 | 344 | 2.05e-95 | 291 |
| MS.gene067741.t1 | MTR_1g022160 | 43.789 | 322 | 179 | 2 | 8 | 327 | 24 | 345 | 1.12e-94 | 288 |
| MS.gene067741.t1 | MTR_1g007810 | 44.795 | 317 | 169 | 3 | 9 | 323 | 17 | 329 | 5.48e-94 | 284 |
| MS.gene067741.t1 | MTR_1g022160 | 43.925 | 321 | 178 | 2 | 8 | 326 | 24 | 344 | 8.10e-94 | 288 |
| MS.gene067741.t1 | MTR_1g022160 | 43.925 | 321 | 178 | 2 | 8 | 326 | 24 | 344 | 8.49e-94 | 288 |
| MS.gene067741.t1 | MTR_1g022160 | 43.925 | 321 | 178 | 2 | 8 | 326 | 24 | 344 | 1.08e-93 | 287 |
| MS.gene067741.t1 | MTR_3g116510 | 43.887 | 319 | 178 | 1 | 9 | 326 | 29 | 347 | 3.06e-93 | 285 |
| MS.gene067741.t1 | MTR_6g088885 | 43.202 | 331 | 180 | 3 | 5 | 331 | 24 | 350 | 4.35e-90 | 279 |
| MS.gene067741.t1 | MTR_7g053500 | 39.521 | 334 | 196 | 5 | 9 | 337 | 27 | 359 | 3.38e-87 | 270 |
| MS.gene067741.t1 | MTR_7g026340 | 41.925 | 322 | 179 | 6 | 7 | 326 | 22 | 337 | 6.45e-84 | 261 |
| MS.gene067741.t1 | MTR_8g102340 | 42.638 | 326 | 153 | 4 | 3 | 328 | 23 | 314 | 5.75e-81 | 254 |
| MS.gene067741.t1 | MTR_8g012400 | 37.690 | 329 | 199 | 5 | 9 | 332 | 30 | 357 | 7.14e-79 | 249 |
| MS.gene067741.t1 | MTR_4g088155 | 38.226 | 327 | 194 | 5 | 9 | 328 | 24 | 349 | 8.34e-79 | 248 |
| MS.gene067741.t1 | MTR_4g083500 | 41.875 | 320 | 181 | 5 | 9 | 326 | 45 | 361 | 8.91e-77 | 245 |
| MS.gene067741.t1 | MTR_1g031900 | 37.654 | 324 | 197 | 3 | 9 | 328 | 25 | 347 | 2.62e-75 | 240 |
| MS.gene067741.t1 | MTR_1g031900 | 37.654 | 324 | 197 | 3 | 9 | 328 | 25 | 347 | 3.70e-75 | 240 |
| MS.gene067741.t1 | MTR_8g085720 | 37.126 | 334 | 205 | 3 | 5 | 334 | 23 | 355 | 3.93e-75 | 240 |
| MS.gene067741.t1 | MTR_3g065460 | 37.615 | 327 | 195 | 4 | 8 | 328 | 24 | 347 | 6.90e-73 | 234 |
| MS.gene067741.t1 | MTR_4g132280 | 37.462 | 331 | 202 | 3 | 2 | 328 | 39 | 368 | 2.23e-72 | 233 |
| MS.gene067741.t1 | MTR_4g076490 | 38.080 | 323 | 186 | 5 | 7 | 328 | 96 | 405 | 6.14e-72 | 229 |
| MS.gene067741.t1 | MTR_4g076470 | 37.855 | 317 | 182 | 6 | 7 | 322 | 22 | 324 | 1.73e-70 | 223 |
| MS.gene067741.t1 | MTR_7g053500 | 39.286 | 280 | 164 | 5 | 63 | 337 | 4 | 282 | 2.26e-70 | 224 |
| MS.gene067741.t1 | MTR_1g052430 | 39.169 | 337 | 187 | 9 | 6 | 339 | 30 | 351 | 6.68e-70 | 224 |
| MS.gene067741.t1 | MTR_4g076440 | 38.438 | 320 | 184 | 6 | 7 | 326 | 22 | 328 | 1.18e-69 | 221 |
| MS.gene067741.t1 | MTR_4g076255 | 38.050 | 318 | 184 | 5 | 7 | 324 | 24 | 328 | 4.46e-69 | 219 |
| MS.gene067741.t1 | MTR_4g076570 | 39.062 | 320 | 187 | 5 | 7 | 325 | 21 | 333 | 1.51e-68 | 219 |
| MS.gene067741.t1 | MTR_5g078200 | 35.780 | 327 | 201 | 4 | 8 | 328 | 23 | 346 | 5.21e-68 | 225 |
| MS.gene067741.t1 | MTR_3g083580 | 34.985 | 323 | 204 | 4 | 5 | 322 | 23 | 344 | 8.56e-68 | 221 |
| MS.gene067741.t1 | MTR_5g078200 | 36.076 | 316 | 193 | 4 | 19 | 328 | 1 | 313 | 8.82e-66 | 218 |
| MS.gene067741.t1 | MTR_4g076430 | 37.267 | 322 | 185 | 8 | 7 | 326 | 22 | 328 | 1.31e-65 | 210 |
| MS.gene067741.t1 | MTR_2g034470 | 37.764 | 331 | 194 | 8 | 1 | 328 | 23 | 344 | 2.34e-65 | 211 |
| MS.gene067741.t1 | MTR_2g034440 | 37.578 | 322 | 189 | 8 | 1 | 319 | 15 | 327 | 8.37e-64 | 206 |
| MS.gene067741.t1 | MTR_3g116510 | 46.009 | 213 | 115 | 0 | 114 | 326 | 1 | 213 | 6.09e-63 | 203 |
| MS.gene067741.t1 | MTR_8g012400 | 38.182 | 275 | 164 | 5 | 63 | 332 | 4 | 277 | 7.76e-63 | 205 |
| MS.gene067741.t1 | MTR_2g034470 | 38.486 | 317 | 183 | 8 | 15 | 328 | 2 | 309 | 1.27e-62 | 202 |
| MS.gene067741.t1 | MTR_7g081350 | 33.968 | 315 | 198 | 6 | 9 | 322 | 28 | 333 | 1.58e-62 | 202 |
| MS.gene067741.t1 | MTR_4g076500 | 37.700 | 313 | 185 | 5 | 7 | 318 | 77 | 380 | 1.76e-62 | 204 |
| MS.gene067741.t1 | MTR_2g034480 | 36.646 | 322 | 194 | 7 | 9 | 328 | 28 | 341 | 1.90e-62 | 203 |
| MS.gene067741.t1 | MTR_7g081370 | 32.911 | 316 | 189 | 7 | 8 | 322 | 28 | 321 | 2.29e-55 | 184 |
| MS.gene067741.t1 | MTR_8g092070 | 32.927 | 328 | 205 | 10 | 9 | 328 | 35 | 355 | 3.21e-54 | 187 |
| MS.gene067741.t1 | MTR_1g010120 | 33.143 | 350 | 204 | 13 | 1 | 340 | 21 | 350 | 3.89e-50 | 174 |
| MS.gene067741.t1 | MTR_2g027560 | 33.435 | 329 | 204 | 10 | 7 | 326 | 27 | 349 | 1.14e-47 | 167 |
| MS.gene067741.t1 | MTR_5g081720 | 33.951 | 324 | 201 | 9 | 5 | 323 | 34 | 349 | 2.54e-46 | 161 |
| MS.gene067741.t1 | MTR_7g085390 | 32.143 | 336 | 206 | 13 | 7 | 330 | 25 | 350 | 5.17e-45 | 160 |
| MS.gene067741.t1 | MTR_4g124440 | 30.838 | 334 | 210 | 13 | 6 | 328 | 26 | 349 | 6.72e-45 | 160 |
| MS.gene067741.t1 | MTR_3g108600 | 32.615 | 325 | 187 | 10 | 9 | 326 | 32 | 331 | 1.81e-44 | 159 |
| MS.gene067741.t1 | MTR_6g032820 | 32.622 | 328 | 197 | 12 | 9 | 322 | 27 | 344 | 1.07e-43 | 156 |
| MS.gene067741.t1 | MTR_4g112025 | 32.353 | 340 | 211 | 12 | 1 | 329 | 24 | 355 | 1.96e-43 | 157 |
| MS.gene067741.t1 | MTR_3g095050 | 30.973 | 339 | 209 | 15 | 8 | 332 | 34 | 361 | 2.96e-43 | 156 |
| MS.gene067741.t1 | MTR_1g053320 | 30.606 | 330 | 213 | 10 | 9 | 328 | 31 | 354 | 2.98e-43 | 155 |
| MS.gene067741.t1 | MTR_3g031770 | 30.816 | 331 | 211 | 11 | 7 | 328 | 26 | 347 | 4.68e-39 | 144 |
| MS.gene067741.t1 | MTR_4g134280 | 34.340 | 265 | 148 | 11 | 95 | 340 | 3 | 260 | 4.80e-31 | 120 |
| MS.gene067741.t1 | MTR_6g078180 | 76.000 | 50 | 12 | 0 | 71 | 120 | 5 | 54 | 1.70e-20 | 84.3 |
| MS.gene067741.t1 | MTR_4g036775 | 38.235 | 102 | 56 | 4 | 224 | 324 | 80 | 175 | 6.31e-15 | 73.6 |
| MS.gene067741.t1 | MTR_4g036680 | 38.235 | 102 | 56 | 4 | 224 | 324 | 80 | 175 | 6.43e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067741.t1 | AT2G27500 | 64.307 | 339 | 120 | 1 | 2 | 339 | 23 | 361 | 2.35e-172 | 484 |
| MS.gene067741.t1 | AT2G27500 | 64.307 | 339 | 120 | 1 | 2 | 339 | 23 | 361 | 2.53e-172 | 484 |
| MS.gene067741.t1 | AT2G27500 | 63.028 | 284 | 104 | 1 | 58 | 340 | 1 | 284 | 9.43e-142 | 404 |
| MS.gene067741.t1 | AT1G32860 | 56.211 | 322 | 139 | 1 | 7 | 326 | 28 | 349 | 1.96e-136 | 395 |
| MS.gene067741.t1 | AT5G42100 | 53.704 | 324 | 147 | 2 | 7 | 327 | 26 | 349 | 5.86e-125 | 365 |
| MS.gene067741.t1 | AT5G42100 | 53.704 | 324 | 147 | 2 | 7 | 327 | 26 | 349 | 6.12e-125 | 365 |
| MS.gene067741.t1 | AT4G18340 | 50.000 | 320 | 160 | 0 | 7 | 326 | 33 | 352 | 2.83e-121 | 354 |
| MS.gene067741.t1 | AT4G18340 | 50.000 | 320 | 160 | 0 | 7 | 326 | 33 | 352 | 3.60e-121 | 355 |
| MS.gene067741.t1 | AT1G30080 | 49.530 | 319 | 161 | 0 | 7 | 325 | 35 | 353 | 2.92e-116 | 342 |
| MS.gene067741.t1 | AT1G30080 | 49.530 | 319 | 161 | 0 | 7 | 325 | 35 | 353 | 3.94e-116 | 342 |
| MS.gene067741.t1 | AT3G15800 | 49.691 | 324 | 161 | 2 | 7 | 328 | 42 | 365 | 4.04e-116 | 342 |
| MS.gene067741.t1 | AT2G26600 | 44.985 | 329 | 177 | 2 | 2 | 326 | 25 | 353 | 1.33e-109 | 325 |
| MS.gene067741.t1 | AT4G26830 | 47.799 | 318 | 162 | 3 | 9 | 324 | 30 | 345 | 1.90e-103 | 311 |
| MS.gene067741.t1 | AT4G26830 | 47.799 | 318 | 162 | 3 | 9 | 324 | 26 | 341 | 2.57e-103 | 311 |
| MS.gene067741.t1 | AT5G55180 | 44.186 | 344 | 183 | 4 | 8 | 343 | 27 | 369 | 5.53e-98 | 298 |
| MS.gene067741.t1 | AT5G55180 | 44.186 | 344 | 183 | 4 | 8 | 343 | 27 | 369 | 6.33e-98 | 298 |
| MS.gene067741.t1 | AT2G05790 | 46.894 | 322 | 164 | 4 | 7 | 324 | 24 | 342 | 2.73e-96 | 294 |
| MS.gene067741.t1 | AT2G16230 | 45.231 | 325 | 176 | 2 | 4 | 326 | 20 | 344 | 3.26e-94 | 289 |
| MS.gene067741.t1 | AT4G34480 | 45.768 | 319 | 172 | 1 | 9 | 326 | 27 | 345 | 1.16e-93 | 283 |
| MS.gene067741.t1 | AT4G34480 | 44.848 | 330 | 181 | 1 | 9 | 337 | 27 | 356 | 1.06e-91 | 283 |
| MS.gene067741.t1 | AT5G24318 | 42.857 | 322 | 178 | 3 | 7 | 326 | 29 | 346 | 1.11e-91 | 278 |
| MS.gene067741.t1 | AT2G26600 | 47.082 | 257 | 136 | 0 | 70 | 326 | 3 | 259 | 6.37e-91 | 274 |
| MS.gene067741.t1 | AT5G42720 | 43.925 | 321 | 178 | 2 | 8 | 326 | 26 | 346 | 1.05e-90 | 278 |
| MS.gene067741.t1 | AT5G24318 | 42.857 | 322 | 178 | 3 | 7 | 326 | 29 | 346 | 2.05e-90 | 278 |
| MS.gene067741.t1 | AT5G24318 | 42.857 | 322 | 178 | 3 | 7 | 326 | 29 | 346 | 2.99e-90 | 278 |
| MS.gene067741.t1 | AT5G56590 | 41.411 | 326 | 189 | 2 | 5 | 328 | 23 | 348 | 1.11e-87 | 273 |
| MS.gene067741.t1 | AT4G29360 | 44.237 | 321 | 177 | 2 | 9 | 328 | 28 | 347 | 3.46e-84 | 265 |
| MS.gene067741.t1 | AT4G29360 | 44.237 | 321 | 177 | 2 | 9 | 328 | 38 | 357 | 4.27e-84 | 265 |
| MS.gene067741.t1 | AT3G07320 | 39.266 | 354 | 202 | 7 | 1 | 342 | 14 | 366 | 8.36e-84 | 261 |
| MS.gene067741.t1 | AT2G01630 | 39.385 | 325 | 192 | 3 | 8 | 328 | 23 | 346 | 1.35e-79 | 248 |
| MS.gene067741.t1 | AT2G01630 | 39.385 | 325 | 192 | 3 | 8 | 328 | 23 | 346 | 4.55e-79 | 248 |
| MS.gene067741.t1 | AT2G01630 | 39.385 | 325 | 192 | 3 | 8 | 328 | 23 | 346 | 3.42e-78 | 248 |
| MS.gene067741.t1 | AT4G16260 | 39.564 | 321 | 186 | 4 | 4 | 324 | 20 | 332 | 3.36e-76 | 238 |
| MS.gene067741.t1 | AT4G14080 | 38.226 | 327 | 197 | 4 | 9 | 331 | 43 | 368 | 5.10e-76 | 242 |
| MS.gene067741.t1 | AT2G39640 | 40.312 | 320 | 183 | 4 | 7 | 326 | 29 | 340 | 4.37e-75 | 241 |
| MS.gene067741.t1 | AT3G23770 | 38.838 | 327 | 192 | 5 | 9 | 328 | 38 | 363 | 1.02e-74 | 238 |
| MS.gene067741.t1 | AT3G55430 | 38.728 | 346 | 194 | 11 | 7 | 343 | 28 | 364 | 2.66e-73 | 234 |
| MS.gene067741.t1 | AT4G16260 | 39.355 | 310 | 180 | 4 | 15 | 324 | 2 | 303 | 1.45e-72 | 228 |
| MS.gene067741.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 4 | 322 | 22 | 343 | 1.85e-72 | 233 |
| MS.gene067741.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 4 | 322 | 22 | 343 | 1.85e-72 | 233 |
| MS.gene067741.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 4 | 322 | 22 | 343 | 1.85e-72 | 233 |
| MS.gene067741.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 4 | 322 | 22 | 343 | 1.85e-72 | 233 |
| MS.gene067741.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 4 | 322 | 22 | 343 | 1.85e-72 | 233 |
| MS.gene067741.t1 | AT1G11820 | 37.346 | 324 | 198 | 3 | 9 | 328 | 45 | 367 | 1.10e-71 | 228 |
| MS.gene067741.t1 | AT1G11820 | 37.346 | 324 | 198 | 3 | 9 | 328 | 45 | 367 | 1.42e-70 | 228 |
| MS.gene067741.t1 | AT1G11820 | 37.346 | 324 | 198 | 3 | 9 | 328 | 45 | 367 | 4.52e-70 | 227 |
| MS.gene067741.t1 | AT3G57270 | 36.842 | 323 | 192 | 7 | 5 | 324 | 24 | 337 | 4.48e-69 | 219 |
| MS.gene067741.t1 | AT4G34480 | 47.737 | 243 | 127 | 0 | 95 | 337 | 3 | 245 | 2.99e-68 | 219 |
| MS.gene067741.t1 | AT1G66250 | 35.276 | 326 | 205 | 4 | 5 | 326 | 29 | 352 | 1.44e-66 | 218 |
| MS.gene067741.t1 | AT3G46570 | 38.580 | 324 | 188 | 8 | 9 | 327 | 28 | 345 | 3.85e-66 | 213 |
| MS.gene067741.t1 | AT3G61810 | 34.365 | 323 | 196 | 5 | 9 | 324 | 56 | 369 | 3.49e-62 | 203 |
| MS.gene067741.t1 | AT5G24318 | 45.024 | 211 | 111 | 2 | 117 | 326 | 1 | 207 | 3.47e-59 | 193 |
| MS.gene067741.t1 | AT3G57260 | 33.754 | 317 | 196 | 7 | 9 | 324 | 33 | 336 | 2.71e-57 | 189 |
| MS.gene067741.t1 | AT3G57260 | 33.754 | 317 | 196 | 7 | 9 | 324 | 49 | 352 | 4.27e-57 | 189 |
| MS.gene067741.t1 | AT1G77790 | 35.423 | 319 | 195 | 7 | 9 | 324 | 31 | 341 | 4.84e-57 | 189 |
| MS.gene067741.t1 | AT1G77780 | 35.016 | 317 | 196 | 7 | 9 | 324 | 25 | 332 | 2.03e-56 | 187 |
| MS.gene067741.t1 | AT5G20340 | 36.137 | 321 | 193 | 9 | 7 | 324 | 42 | 353 | 3.16e-56 | 187 |
| MS.gene067741.t1 | AT3G57240 | 34.286 | 315 | 192 | 8 | 9 | 322 | 36 | 336 | 7.06e-55 | 183 |
| MS.gene067741.t1 | AT5G20390 | 34.796 | 319 | 196 | 8 | 9 | 324 | 34 | 343 | 4.93e-54 | 181 |
| MS.gene067741.t1 | AT5G20330 | 34.891 | 321 | 197 | 9 | 7 | 324 | 33 | 344 | 8.56e-52 | 175 |
| MS.gene067741.t1 | AT3G55780 | 36.877 | 301 | 174 | 9 | 21 | 313 | 48 | 340 | 2.67e-50 | 172 |
| MS.gene067741.t1 | AT1G64760 | 33.433 | 335 | 204 | 12 | 3 | 328 | 22 | 346 | 8.68e-49 | 171 |
| MS.gene067741.t1 | AT1G64760 | 33.433 | 335 | 204 | 12 | 3 | 328 | 22 | 346 | 8.68e-49 | 171 |
| MS.gene067741.t1 | AT2G19440 | 33.234 | 337 | 206 | 12 | 1 | 328 | 16 | 342 | 2.03e-48 | 169 |
| MS.gene067741.t1 | AT2G19440 | 33.234 | 337 | 206 | 12 | 1 | 328 | 16 | 342 | 2.03e-48 | 169 |
| MS.gene067741.t1 | AT1G33220 | 32.812 | 320 | 195 | 8 | 7 | 324 | 33 | 334 | 1.52e-47 | 164 |
| MS.gene067741.t1 | AT5G18220 | 28.947 | 342 | 230 | 9 | 7 | 342 | 29 | 363 | 1.50e-45 | 162 |
| MS.gene067741.t1 | AT5G20870 | 33.711 | 353 | 204 | 15 | 3 | 338 | 27 | 366 | 4.17e-45 | 161 |
| MS.gene067741.t1 | AT5G58090 | 31.707 | 328 | 209 | 10 | 7 | 326 | 21 | 341 | 4.24e-44 | 158 |
| MS.gene067741.t1 | AT3G04010 | 31.054 | 351 | 219 | 11 | 3 | 342 | 30 | 368 | 1.52e-42 | 154 |
| MS.gene067741.t1 | AT4G31140 | 29.940 | 334 | 217 | 11 | 1 | 326 | 22 | 346 | 4.52e-42 | 152 |
| MS.gene067741.t1 | AT5G64790 | 28.571 | 336 | 225 | 10 | 7 | 334 | 27 | 355 | 9.53e-42 | 152 |
| MS.gene067741.t1 | AT5G58480 | 31.288 | 326 | 209 | 9 | 9 | 326 | 27 | 345 | 1.81e-41 | 151 |
| MS.gene067741.t1 | AT3G24330 | 32.628 | 331 | 204 | 12 | 9 | 328 | 40 | 362 | 2.51e-40 | 148 |
| MS.gene067741.t1 | AT5G20560 | 30.645 | 310 | 205 | 7 | 9 | 316 | 35 | 336 | 9.18e-38 | 138 |
| MS.gene067741.t1 | AT4G17180 | 29.179 | 329 | 211 | 11 | 7 | 326 | 24 | 339 | 2.69e-36 | 137 |
Find 57 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGTTATGCAATTTATTT+TGG | 0.148253 | 4.2:+49266697 | None:intergenic |
| TCAAATGTTGAATTTGTTAT+AGG | 0.179247 | 4.2:-49266809 | MS.gene067741:CDS |
| ACCCTTCTAAAGCTCAAAAT+TGG | 0.203490 | 4.2:-49266754 | MS.gene067741:CDS |
| GTTGAATTTGTTATAGGAAT+TGG | 0.226002 | 4.2:-49266803 | MS.gene067741:CDS |
| CAAATCAATGGCCTAAGTTT+TGG | 0.237417 | 4.2:-49266962 | MS.gene067741:CDS |
| AACAAATTCAACATTTGATT+TGG | 0.238369 | 4.2:+49266814 | None:intergenic |
| TAGTTTAAAGATACCTCATT+AGG | 0.279200 | 4.2:+49266395 | None:intergenic |
| GAGAAAGCAAGTAGAACATT+TGG | 0.321710 | 4.2:+49266836 | None:intergenic |
| AATGGCGACGCCGATGAAAT+TGG | 0.330096 | 4.2:-49266215 | MS.gene067741:CDS |
| TCATCAAGAAATTCAACAAT+TGG | 0.359860 | 4.2:+49266473 | None:intergenic |
| ATTGGAACCAATGGATTTCC+AGG | 0.366015 | 4.2:+49266122 | None:intergenic |
| TCATAATGTAAATTTGTGTT+TGG | 0.368318 | 4.2:+49266338 | None:intergenic |
| ATTTCAACCAAATGAAGGTT+TGG | 0.371282 | 4.2:-49266366 | MS.gene067741:CDS |
| TATGCTGCAATCAAAGTGAT+AGG | 0.372456 | 4.2:-49266284 | MS.gene067741:CDS |
| GGATCAACCAAACCTTCATT+TGG | 0.387383 | 4.2:+49266359 | None:intergenic |
| GTATACCAATGTTGAAGTTA+AGG | 0.389324 | 4.2:-49266261 | MS.gene067741:CDS |
| TGTAATCCAATGTTATAAAC+TGG | 0.399547 | 4.2:+49266008 | None:intergenic |
| CCTGCTTCAGAAAGAAACTA+TGG | 0.401079 | 4.2:-49266053 | MS.gene067741:CDS |
| AGTTTAAAGATACCTCATTA+GGG | 0.402444 | 4.2:+49266396 | None:intergenic |
| CATAATTCACTTGTTAAGCT+TGG | 0.409029 | 4.2:-49266605 | MS.gene067741:CDS |
| GATTCATTTATGCAAATCAA+TGG | 0.436820 | 4.2:-49266974 | None:intergenic |
| CCATAGTTTCTTTCTGAAGC+AGG | 0.437326 | 4.2:+49266053 | None:intergenic |
| GAAGTTAAGGTTTCTGAGAC+AGG | 0.447516 | 4.2:-49266248 | MS.gene067741:CDS |
| CTGTTGTAACAGTAATTACT+TGG | 0.448483 | 4.2:+49266576 | None:intergenic |
| AATTCTTACCCTCCTTCGTC+CGG | 0.452125 | 4.2:-49266530 | MS.gene067741:CDS |
| GAGGAAAGACATGGAACTCC+TGG | 0.456953 | 4.2:-49266140 | MS.gene067741:CDS |
| AAAATAAATTGCATAACTGT+TGG | 0.468767 | 4.2:-49266695 | MS.gene067741:CDS |
| CAAATCTGACCTAAAAGAAC+CGG | 0.469027 | 4.2:+49266511 | None:intergenic |
| ACAAGGTTATCTACCACAAA+TGG | 0.472431 | 4.2:-49265988 | MS.gene067741:CDS |
| TTCTTGTCTTTATAGTTACA+TGG | 0.472799 | 4.2:-49265664 | MS.gene067741:intron |
| GAGACAGGTTGGCCTTCAAA+TGG | 0.474442 | 4.2:-49266233 | MS.gene067741:CDS |
| GCATTATTTCAACCAAATGA+AGG | 0.475383 | 4.2:-49266371 | MS.gene067741:CDS |
| CATAGTTTATTCCAAAACTT+AGG | 0.484241 | 4.2:+49266951 | None:intergenic |
| GGTAGACCAGTTTATAACAT+TGG | 0.488178 | 4.2:-49266014 | MS.gene067741:CDS |
| TTTCTTTCTGAAGCAGGACC+AGG | 0.491860 | 4.2:+49266059 | None:intergenic |
| AAATTTGCTTAGAAGAATTG+AGG | 0.496626 | 4.2:-49266159 | MS.gene067741:CDS |
| TTATAAACTGGTCTACCATC+AGG | 0.497918 | 4.2:+49266020 | None:intergenic |
| TTGGATGGCACAACCATTTG+TGG | 0.503269 | 4.2:+49265975 | None:intergenic |
| TATACATCAATTGGAACCAA+TGG | 0.507282 | 4.2:+49266113 | None:intergenic |
| TCATCGGCGTCGCCATTTGA+AGG | 0.508122 | 4.2:+49266221 | None:intergenic |
| TGGTGTAGCACCAATTTCAT+CGG | 0.510200 | 4.2:+49266205 | None:intergenic |
| GTTTATAACATTGGATTACA+AGG | 0.510666 | 4.2:-49266005 | MS.gene067741:CDS |
| AGAAACCTTAACTTCAACAT+TGG | 0.523456 | 4.2:+49266256 | None:intergenic |
| TTGCTTACATTAGATTTGGA+TGG | 0.524160 | 4.2:+49265960 | None:intergenic |
| TCTTGAATGAGATGGTAGAT+TGG | 0.531449 | 4.2:+49266916 | None:intergenic |
| TATGGACTTTATTATCCTGA+TGG | 0.553442 | 4.2:-49266035 | MS.gene067741:CDS |
| TTTAATGAAGATTTGAAACC+TGG | 0.554891 | 4.2:-49266077 | MS.gene067741:CDS |
| TGGAACTCCTGGAAATCCAT+TGG | 0.557029 | 4.2:-49266129 | MS.gene067741:CDS |
| TTAAGGTTTCTGAGACAGGT+TGG | 0.560373 | 4.2:-49266244 | MS.gene067741:CDS |
| TAAAAGAACCGGACGAAGGA+GGG | 0.563985 | 4.2:+49266522 | None:intergenic |
| ATGCTGCAATCAAAGTGATA+GGG | 0.595645 | 4.2:-49266283 | MS.gene067741:CDS |
| ACTGCAACTCTTGAATGAGA+TGG | 0.599503 | 4.2:+49266908 | None:intergenic |
| CTAAAAGAACCGGACGAAGG+AGG | 0.620046 | 4.2:+49266521 | None:intergenic |
| ATATAAAGATAACCCTAATG+AGG | 0.620782 | 4.2:-49266408 | MS.gene067741:CDS |
| AGAAGAATTGAGGAAAGACA+TGG | 0.624353 | 4.2:-49266149 | MS.gene067741:CDS |
| CAAAATGCAAAATTGTACAA+TGG | 0.632067 | 4.2:-49266182 | MS.gene067741:CDS |
| GACCTAAAAGAACCGGACGA+AGG | 0.662778 | 4.2:+49266518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTTTATTTATGCT+TGG | - | chr4.2:49266841-49266860 | MS.gene067741:CDS | 10.0% |
| !! | ACATAAAAATTAATCTGAAA+AGG | + | chr4.2:49266702-49266721 | None:intergenic | 15.0% |
| !! | TATCTTTATATGCAAAAAAA+GGG | + | chr4.2:49266208-49266227 | None:intergenic | 15.0% |
| !! | TTAAAAACTACTACAAAAAT+TGG | + | chr4.2:49266886-49266905 | None:intergenic | 15.0% |
| !! | TTATCTTTATATGCAAAAAA+AGG | + | chr4.2:49266209-49266228 | None:intergenic | 15.0% |
| !! | AAAATAAATTGCATAACTGT+TGG | - | chr4.2:49265930-49265949 | MS.gene067741:intron | 20.0% |
| !! | AACAAATTCAACATTTGATT+TGG | + | chr4.2:49265814-49265833 | None:intergenic | 20.0% |
| !! | TCATAATGTAAATTTGTGTT+TGG | + | chr4.2:49266290-49266309 | None:intergenic | 20.0% |
| !!! | AACAGTTATGCAATTTATTT+TGG | + | chr4.2:49265931-49265950 | None:intergenic | 20.0% |
| !!! | AATTTATTTTGGTTTGTGAA+AGG | + | chr4.2:49265920-49265939 | None:intergenic | 20.0% |
| !!! | AATTTTGCTTACATTAGATT+TGG | + | chr4.2:49266672-49266691 | None:intergenic | 20.0% |
| !!! | TCAAATGTTGAATTTGTTAT+AGG | - | chr4.2:49265816-49265835 | MS.gene067741:intron | 20.0% |
| ! | AGTTTAAAGATACCTCATTA+GGG | + | chr4.2:49266232-49266251 | None:intergenic | 25.0% |
| ! | ATATAAAGATAACCCTAATG+AGG | - | chr4.2:49266217-49266236 | MS.gene067741:CDS | 25.0% |
| ! | ATGCTTGGATATTAGATTAT+TGG | - | chr4.2:49266856-49266875 | MS.gene067741:CDS | 25.0% |
| ! | CAAAATGCAAAATTGTACAA+TGG | - | chr4.2:49266443-49266462 | MS.gene067741:CDS | 25.0% |
| ! | CATAGTTTATTCCAAAACTT+AGG | + | chr4.2:49265677-49265696 | None:intergenic | 25.0% |
| ! | GCAAAAACATATACATCAAT+TGG | + | chr4.2:49266524-49266543 | None:intergenic | 25.0% |
| ! | GTTTATAACATTGGATTACA+AGG | - | chr4.2:49266620-49266639 | MS.gene067741:CDS | 25.0% |
| ! | TAGTTTAAAGATACCTCATT+AGG | + | chr4.2:49266233-49266252 | None:intergenic | 25.0% |
| ! | TCATCAAGAAATTCAACAAT+TGG | + | chr4.2:49266155-49266174 | None:intergenic | 25.0% |
| ! | TGTAATCCAATGTTATAAAC+TGG | + | chr4.2:49266620-49266639 | None:intergenic | 25.0% |
| ! | TTCTTGTCTTTATAGTTACA+TGG | - | chr4.2:49266961-49266980 | MS.gene067741:CDS | 25.0% |
| !! | AAATTTGCTTAGAAGAATTG+AGG | - | chr4.2:49266466-49266485 | MS.gene067741:CDS | 25.0% |
| !! | AGCTCATTCTTTTAACATTT+TGG | - | chr4.2:49266070-49266089 | MS.gene067741:CDS | 25.0% |
| !! | GATTAATTTTTATGTACCGA+CGG | - | chr4.2:49266707-49266726 | MS.gene067741:CDS | 25.0% |
| !! | TTATGAACATTTTGCATTGA+AGG | + | chr4.2:49266005-49266024 | None:intergenic | 25.0% |
| !! | TTGTACAATTTTGCATTTTG+TGG | + | chr4.2:49266443-49266462 | None:intergenic | 25.0% |
| !! | TTTAATGAAGATTTGAAACC+TGG | - | chr4.2:49266548-49266567 | MS.gene067741:CDS | 25.0% |
| !!! | CTAAGTTTTGGAATAAACTA+TGG | - | chr4.2:49265675-49265694 | MS.gene067741:intron | 25.0% |
| !!! | GTTGAATTTGTTATAGGAAT+TGG | - | chr4.2:49265822-49265841 | MS.gene067741:intron | 25.0% |
| AGAAACCTTAACTTCAACAT+TGG | + | chr4.2:49266372-49266391 | None:intergenic | 30.0% | |
| ATTTCAACCAAATGAAGGTT+TGG | - | chr4.2:49266259-49266278 | MS.gene067741:CDS | 30.0% | |
| CTGTTGTAACAGTAATTACT+TGG | + | chr4.2:49266052-49266071 | None:intergenic | 30.0% | |
| GCATTATTTCAACCAAATGA+AGG | - | chr4.2:49266254-49266273 | MS.gene067741:CDS | 30.0% | |
| GTATACCAATGTTGAAGTTA+AGG | - | chr4.2:49266364-49266383 | MS.gene067741:CDS | 30.0% | |
| TATACATCAATTGGAACCAA+TGG | + | chr4.2:49266515-49266534 | None:intergenic | 30.0% | |
| TATGGACTTTATTATCCTGA+TGG | - | chr4.2:49266590-49266609 | MS.gene067741:CDS | 30.0% | |
| TTGCTTACATTAGATTTGGA+TGG | + | chr4.2:49266668-49266687 | None:intergenic | 30.0% | |
| ! | CATAATTCACTTGTTAAGCT+TGG | - | chr4.2:49266020-49266039 | MS.gene067741:CDS | 30.0% |
| !!! | ATCCAATTTTGAGCTTTAGA+AGG | + | chr4.2:49265876-49265895 | None:intergenic | 30.0% |
| !!! | ATTTTGGTTTGTGAAAGGTA+AGG | + | chr4.2:49265915-49265934 | None:intergenic | 30.0% |
| !!! | TCCAATTTTGAGCTTTAGAA+GGG | + | chr4.2:49265875-49265894 | None:intergenic | 30.0% |
| ACAAGGTTATCTACCACAAA+TGG | - | chr4.2:49266637-49266656 | MS.gene067741:CDS | 35.0% | |
| AGAAGAATTGAGGAAAGACA+TGG | - | chr4.2:49266476-49266495 | MS.gene067741:CDS | 35.0% | |
| ATGCTGCAATCAAAGTGATA+GGG | - | chr4.2:49266342-49266361 | MS.gene067741:CDS | 35.0% | |
| CAAATCTGACCTAAAAGAAC+CGG | + | chr4.2:49266117-49266136 | None:intergenic | 35.0% | |
| GAGAAAGCAAGTAGAACATT+TGG | + | chr4.2:49265792-49265811 | None:intergenic | 35.0% | |
| GGTAGACCAGTTTATAACAT+TGG | - | chr4.2:49266611-49266630 | MS.gene067741:CDS | 35.0% | |
| TATGCTGCAATCAAAGTGAT+AGG | - | chr4.2:49266341-49266360 | MS.gene067741:CDS | 35.0% | |
| TCTTGAATGAGATGGTAGAT+TGG | + | chr4.2:49265712-49265731 | None:intergenic | 35.0% | |
| ! | CAAATCAATGGCCTAAGTTT+TGG | - | chr4.2:49265663-49265682 | MS.gene067741:intron | 35.0% |
| ! | TTATAAACTGGTCTACCATC+AGG | + | chr4.2:49266608-49266627 | None:intergenic | 35.0% |
| !! | ACCCTTCTAAAGCTCAAAAT+TGG | - | chr4.2:49265871-49265890 | MS.gene067741:intron | 35.0% |
| ACCTGCATCAAATCACATCT+CGG | + | chr4.2:49266789-49266808 | None:intergenic | 40.0% | |
| ACTGCAACTCTTGAATGAGA+TGG | + | chr4.2:49265720-49265739 | None:intergenic | 40.0% | |
| CCTGCTTCAGAAAGAAACTA+TGG | - | chr4.2:49266572-49266591 | MS.gene067741:CDS | 40.0% | |
| GGATCAACCAAACCTTCATT+TGG | + | chr4.2:49266269-49266288 | None:intergenic | 40.0% | |
| TGGTGTAGCACCAATTTCAT+CGG | + | chr4.2:49266423-49266442 | None:intergenic | 40.0% | |
| TTAAAAAACGTGCACACCGT+CGG | + | chr4.2:49266726-49266745 | None:intergenic | 40.0% | |
| ! | ATTGGAACCAATGGATTTCC+AGG | + | chr4.2:49266506-49266525 | None:intergenic | 40.0% |
| ! | TCACATCTCGGAGATGTTTT+AGG | + | chr4.2:49266777-49266796 | None:intergenic | 40.0% |
| !! | CCATAGTTTCTTTCTGAAGC+AGG | + | chr4.2:49266575-49266594 | None:intergenic | 40.0% |
| !! | GAAGTTAAGGTTTCTGAGAC+AGG | - | chr4.2:49266377-49266396 | MS.gene067741:CDS | 40.0% |
| !! | TTAAGGTTTCTGAGACAGGT+TGG | - | chr4.2:49266381-49266400 | MS.gene067741:CDS | 40.0% |
| AATTCTTACCCTCCTTCGTC+CGG | - | chr4.2:49266095-49266114 | MS.gene067741:CDS | 45.0% | |
| TAAAAGAACCGGACGAAGGA+GGG | + | chr4.2:49266106-49266125 | None:intergenic | 45.0% | |
| TCCGAGATGTGATTTGATGC+AGG | - | chr4.2:49266785-49266804 | MS.gene067741:CDS | 45.0% | |
| TGGAACTCCTGGAAATCCAT+TGG | - | chr4.2:49266496-49266515 | MS.gene067741:CDS | 45.0% | |
| TTGGATGGCACAACCATTTG+TGG | + | chr4.2:49266653-49266672 | None:intergenic | 45.0% | |
| !! | TTTCTTTCTGAAGCAGGACC+AGG | + | chr4.2:49266569-49266588 | None:intergenic | 45.0% |
| AATGGCGACGCCGATGAAAT+TGG | - | chr4.2:49266410-49266429 | MS.gene067741:CDS | 50.0% | |
| CTAAAAGAACCGGACGAAGG+AGG | + | chr4.2:49266107-49266126 | None:intergenic | 50.0% | |
| GACCTAAAAGAACCGGACGA+AGG | + | chr4.2:49266110-49266129 | None:intergenic | 50.0% | |
| GAGGAAAGACATGGAACTCC+TGG | - | chr4.2:49266485-49266504 | MS.gene067741:CDS | 50.0% | |
| ! | CTCCTTCGTCCGGTTCTTTT+AGG | - | chr4.2:49266105-49266124 | MS.gene067741:CDS | 50.0% |
| !! | GAGACAGGTTGGCCTTCAAA+TGG | - | chr4.2:49266392-49266411 | MS.gene067741:CDS | 50.0% |
| TCATCGGCGTCGCCATTTGA+AGG | + | chr4.2:49266407-49266426 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 49265660 | 49266987 | 49265660 | ID=MS.gene067741 |
| chr4.2 | mRNA | 49265660 | 49266987 | 49265660 | ID=MS.gene067741.t1;Parent=MS.gene067741 |
| chr4.2 | exon | 49265968 | 49266987 | 49265968 | ID=MS.gene067741.t1.exon1;Parent=MS.gene067741.t1 |
| chr4.2 | CDS | 49265968 | 49266987 | 49265968 | ID=cds.MS.gene067741.t1;Parent=MS.gene067741.t1 |
| chr4.2 | exon | 49265660 | 49265671 | 49265660 | ID=MS.gene067741.t1.exon2;Parent=MS.gene067741.t1 |
| chr4.2 | CDS | 49265660 | 49265671 | 49265660 | ID=cds.MS.gene067741.t1;Parent=MS.gene067741.t1 |
| Gene Sequence |
| Protein sequence |
