AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056511


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056511.t1 MTR_8g070840 93.364 648 26 4 1 644 1 635 0.0 1069
MS.gene056511.t1 MTR_3g101660 51.118 671 265 10 24 644 288 945 0.0 543
MS.gene056511.t1 MTR_1g019490 47.118 694 291 15 3 643 246 916 1.87e-157 476
MS.gene056511.t1 MTR_3g060660 30.017 593 335 15 3 549 13 571 2.18e-23 105
MS.gene056511.t1 MTR_3g060660 31.765 425 268 8 136 549 147 560 8.34e-20 94.4
MS.gene056511.t1 MTR_4g029090 30.224 268 179 3 284 550 164 424 3.36e-19 92.0
MS.gene056511.t1 MTR_7g072550 26.966 267 188 2 285 551 177 436 1.27e-14 77.4
MS.gene056511.t1 MTR_5g096080 26.690 577 370 11 27 561 23 588 8.09e-13 72.0
MS.gene056511.t1 MTR_3g007920 26.689 592 351 16 27 561 23 588 7.07e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056511.t1 AT2G26570 47.661 684 283 14 7 641 148 805 1.92e-163 488
MS.gene056511.t1 AT2G26570 47.661 684 283 14 7 641 148 805 1.92e-163 488
MS.gene056511.t1 AT4G33390 45.982 672 279 10 16 641 145 778 3.11e-144 438
MS.gene056511.t1 AT5G42880 37.997 679 343 11 3 644 114 751 1.46e-96 313
MS.gene056511.t1 AT1G45545 36.183 655 319 12 26 640 154 749 1.34e-81 273
MS.gene056511.t1 AT1G45545 36.183 655 319 12 26 640 155 750 1.57e-81 273
MS.gene056511.t1 AT5G55860 28.507 663 357 24 27 615 22 641 1.75e-15 80.5
MS.gene056511.t1 AT1G12150 25.710 599 316 20 5 542 10 540 4.54e-12 69.3
MS.gene056511.t1 AT1G12150 25.710 599 316 20 5 542 10 540 4.54e-12 69.3
MS.gene056511.t1 AT2G38370 28.779 344 212 7 212 549 81 397 4.87e-12 69.3
MS.gene056511.t1 AT2G38370 28.779 344 212 7 212 549 64 380 7.53e-12 68.6

Find 85 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAGATTGGACATGAATT+TGG 0.194459 8.3:-31968426 MS.gene056511:CDS
TCCAATTCTTCAGCTGTATT+TGG 0.232993 8.3:+31968399 None:intergenic
TTAAGACCAGAATCAGAATT+TGG 0.238508 8.3:+31968927 None:intergenic
TTCCTTCTTTCTTTCTTCAT+TGG 0.249061 8.3:+31967771 None:intergenic
AGAGGAAGATGCTTCCAATT+TGG 0.255053 8.3:+31967855 None:intergenic
ACTTCACCAAATTCTGATTC+TGG 0.286767 8.3:-31968933 MS.gene056511:CDS
CCAACCTGACTAGGGGATTC+TGG 0.296780 8.3:+31968963 None:intergenic
GCTGCTGCTTGAAGTTTCTT+AGG 0.302328 8.3:+31967505 None:intergenic
AACCGAGTTAGCAGCATATA+TGG 0.303826 8.3:-31967815 MS.gene056511:CDS
TTGTGCTTTGGCTTCAAAAC+TGG 0.316051 8.3:+31968242 None:intergenic
ACCAAATACAGCTGAAGAAT+TGG 0.316647 8.3:-31968400 MS.gene056511:CDS
CAAGCAACGCAAAATGAAAT+AGG 0.324106 8.3:-31967367 MS.gene056511:intron
TTCAACCTCAAGTTGTGCTT+TGG 0.326913 8.3:+31968230 None:intergenic
GAATGAAGCAAAAGAGATTA+TGG 0.343738 8.3:-31967536 MS.gene056511:CDS
CAATGTAGCTAAGTTTGCTT+TGG 0.351945 8.3:+31967402 None:intergenic
AAGAGTTCTCAAATCCAAAT+TGG 0.363045 8.3:-31967869 MS.gene056511:CDS
TAGTGCTGCAGTTTCGGAAT+TGG 0.366822 8.3:-31968196 MS.gene056511:CDS
AAGAATTACATTCACTTGCT+TGG 0.370848 8.3:+31966489 None:intergenic
AATGCATAGTGCTGCAGTTT+CGG 0.372224 8.3:-31968202 MS.gene056511:CDS
GAGGAGTTCGGTGAAGAGTT+TGG 0.382248 8.3:+31966693 None:intergenic
AGCTTCAATATTGCTTCAAT+CGG 0.394447 8.3:-31967689 MS.gene056511:CDS
AAAGATGCTGTGTCCAAGTT+TGG 0.401818 8.3:-31968867 MS.gene056511:CDS
GAAATCATTGTTTCCTTCAA+AGG 0.403794 8.3:-31966544 MS.gene056511:CDS
AGCAGTTTGAGCTAATGATT+TGG 0.404652 8.3:+31967465 None:intergenic
GGTGAACAGAGAAGCAAGAT+TGG 0.407271 8.3:-31968438 MS.gene056511:intron
ATCCACTATTCCTCCAAACT+TGG 0.437962 8.3:+31968854 None:intergenic
AATAATAATAATGTTGAAGC+TGG 0.438316 8.3:-31966600 MS.gene056511:CDS
AAGAACATGACAACCTTTGA+AGG 0.442645 8.3:+31966531 None:intergenic
GGAATCTGAATTGAGAAGCT+TGG 0.445293 8.3:-31966934 MS.gene056511:CDS
GCGTAGAAAGAGATGAGCTT+CGG 0.448863 8.3:-31968332 MS.gene056511:CDS
GTCCAAGTTTGGAGGAATAG+TGG 0.450809 8.3:-31968856 MS.gene056511:CDS
TGACTAGGGGATTCTGGTTG+TGG 0.452920 8.3:+31968969 None:intergenic
CGTAGAAAGAGATGAGCTTC+GGG 0.454177 8.3:-31968331 MS.gene056511:CDS
TGTTGAAGCTGGACCAGCTT+CGG 0.456511 8.3:-31966589 MS.gene056511:CDS
TTCGACTCAAACGGCGCACA+TGG 0.465039 8.3:-31968004 MS.gene056511:CDS
AACCCGTAGAACTCAGAGTC+TGG 0.472245 8.3:-31968826 MS.gene056511:CDS
GTAGTAGAGGTAGTATCTAA+AGG 0.480026 8.3:+31966657 None:intergenic
CTCCAGACTCTGAGTTCTAC+GGG 0.484642 8.3:+31968824 None:intergenic
AGTTGCAGTAGTGGTAGTAG+AGG 0.487571 8.3:+31966644 None:intergenic
GTTTCATCACCAACCTGACT+AGG 0.491177 8.3:+31968954 None:intergenic
CCTCCAGACTCTGAGTTCTA+CGG 0.494095 8.3:+31968823 None:intergenic
CGGAGTAGTAGTTGCAGTAG+TGG 0.496410 8.3:+31966635 None:intergenic
GCTAAGTAAGAGAACTCAAA+AGG 0.497779 8.3:-31967015 MS.gene056511:CDS
ACTTGTGATTCGCAAAATTG+AGG 0.498578 8.3:-31968292 MS.gene056511:CDS
GATTCGCAAAATTGAGGAGC+TGG 0.499740 8.3:-31968286 MS.gene056511:CDS
ACAACCAGAATCCCCTAGTC+AGG 0.501202 8.3:-31968967 MS.gene056511:CDS
CAAAGCAAACTTAGCTACAT+TGG 0.504952 8.3:-31967401 MS.gene056511:CDS
GTCATTGATTTCGACTCAAA+CGG 0.505905 8.3:-31968013 MS.gene056511:CDS
TCTTCACCGAACTCCTCAAA+GGG 0.506265 8.3:-31966687 MS.gene056511:CDS
AACCAATGAAGAAAGAAAGA+AGG 0.513814 8.3:-31967773 MS.gene056511:CDS
TAAAGATTCAATCAAAGCAT+TGG 0.524472 8.3:-31967126 MS.gene056511:CDS
GAAGCCGAGGAACAAGCATC+AGG 0.528541 8.3:-31967982 MS.gene056511:CDS
TGAACTCGAACAATCAGAAA+AGG 0.533244 8.3:-31967926 MS.gene056511:CDS
TTCCATATATGCTGCTAACT+CGG 0.533266 8.3:+31967813 None:intergenic
GACGCCTGATGCTTGTTCCT+CGG 0.540978 8.3:+31967978 None:intergenic
CTCTTCACCGAACTCCTCAA+AGG 0.545691 8.3:-31966688 MS.gene056511:CDS
GGAGGCTGTTGCAGCATCCA+AGG 0.547080 8.3:-31968088 MS.gene056511:CDS
AGTTTGGAGGAATAGTGGAT+TGG 0.547175 8.3:-31968851 MS.gene056511:CDS
AGAACAAAGAAAAGCTAATG+AGG 0.557400 8.3:-31966778 MS.gene056511:CDS
TGAAGAGTTGTGTGTAAGAA+GGG 0.557594 8.3:-31966892 MS.gene056511:CDS
TTTCAAATCAAGCAACAAAG+AGG 0.562874 8.3:+31967837 None:intergenic
AGCTGAGTTAATTGCAACAA+AGG 0.564213 8.3:-31968037 MS.gene056511:CDS
AGAAAGAAAGAAGGAACTAG+AGG 0.565108 8.3:-31967764 MS.gene056511:CDS
TTTCATCACCAACCTGACTA+GGG 0.566617 8.3:+31968955 None:intergenic
ATGAAGAGTTGTGTGTAAGA+AGG 0.572186 8.3:-31966893 MS.gene056511:CDS
TAGAACAAGAGTTGAGAACA+TGG 0.577986 8.3:-31966812 MS.gene056511:CDS
TTATTATTATTATCAGTACT+CGG 0.579561 8.3:+31966615 None:intergenic
GATGCTGTGTCCAAGTTTGG+AGG 0.587154 8.3:-31968864 MS.gene056511:CDS
TAAGAGAACTCAAAAGGCTG+AGG 0.589786 8.3:-31967009 MS.gene056511:CDS
CCAGAATCCCCTAGTCAGGT+TGG 0.590353 8.3:-31968963 MS.gene056511:CDS
AATGCTGAGAAAGCTGCAGA+AGG 0.595842 8.3:-31966846 MS.gene056511:CDS
CAAAACTGGCTTCATCTGCA+AGG 0.603066 8.3:+31968256 None:intergenic
GCTTCGGGTAAAAGAAGAAG+TGG 0.603179 8.3:-31968316 MS.gene056511:CDS
TGCAAATTCACAGATTGAGA+TGG 0.603818 8.3:-31966961 MS.gene056511:CDS
GAAGCTGGACCAGCTTCGGA+TGG 0.608617 8.3:-31966585 MS.gene056511:CDS
GCATCTTTGACAGATTTCAA+AGG 0.612629 8.3:+31968882 None:intergenic
AACGGCGCACATGGAAGCCG+AGG 0.615182 8.3:-31967995 MS.gene056511:CDS
TTCACAGATTGAGATGGCAA+AGG 0.617923 8.3:-31966955 MS.gene056511:CDS
TTCATCACCAACCTGACTAG+GGG 0.621675 8.3:+31968956 None:intergenic
TGAAGCCAAAGCACAACTTG+AGG 0.623555 8.3:-31968235 MS.gene056511:CDS
AGAAGTGAATCTGCTAGAGG+AGG 0.628946 8.3:-31967101 MS.gene056511:CDS
TGCAGCTGTCATCAATGCTG+AGG 0.631501 8.3:-31968109 MS.gene056511:CDS
GAGAGAAGTGAATCTGCTAG+AGG 0.632598 8.3:-31967104 MS.gene056511:CDS
AGCTGTCATCAATGCTGAGG+AGG 0.660736 8.3:-31968106 MS.gene056511:CDS
CCGTAGAACTCAGAGTCTGG+AGG 0.709746 8.3:-31968823 MS.gene056511:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTAATAAAATCTTATAA+TGG - chr8.3:31966798-31966817 MS.gene056511:CDS 10.0%
!! TTATTAAGTTATATATGACT+AGG + chr8.3:31966788-31966807 None:intergenic 15.0%
!! TTATTATTATTATCAGTACT+CGG + chr8.3:31968863-31968882 None:intergenic 15.0%
!! AAAAAGAATTAGACTCTTTA+AGG - chr8.3:31967311-31967330 MS.gene056511:intron 20.0%
!! AATAATAATAATGTTGAAGC+TGG - chr8.3:31968875-31968894 MS.gene056511:CDS 20.0%
!! CCTATTATTAGAAATAAAGT+TGG + chr8.3:31968302-31968321 None:intergenic 20.0%
!! TAAAGCAAGAATATAATTTG+AGG + chr8.3:31966700-31966719 None:intergenic 20.0%
!!! AAAGAGTTATTATGTGATTT+TGG - chr8.3:31968225-31968244 MS.gene056511:CDS 20.0%
!!! AAAGTGATTTTTTTCACAAA+TGG - chr8.3:31968262-31968281 MS.gene056511:CDS 20.0%
!!! AACTGATAAAAAAGTGATTT+TGG - chr8.3:31968158-31968177 MS.gene056511:CDS 20.0%
!!! AAGTGATTTTTTTCACAAAT+GGG - chr8.3:31968263-31968282 MS.gene056511:CDS 20.0%
!!! CCAACTTTATTTCTAATAAT+AGG - chr8.3:31968299-31968318 MS.gene056511:CDS 20.0%
!!! TACATTTTTCTTCTTAGTTT+TGG - chr8.3:31966720-31966739 MS.gene056511:CDS 20.0%
! AAAAAAAAGTCATGTGGTTT+AGG + chr8.3:31966992-31967011 None:intergenic 25.0%
! AAAAAAAGTCATGTGGTTTA+GGG + chr8.3:31966991-31967010 None:intergenic 25.0%
! AGAAAGAAAAAAAAGTCATG+TGG + chr8.3:31966998-31967017 None:intergenic 25.0%
! CATTGAAAAAACAACTAATG+AGG - chr8.3:31967747-31967766 MS.gene056511:CDS 25.0%
! TAAAGATTCAATCAAAGCAT+TGG - chr8.3:31968349-31968368 MS.gene056511:CDS 25.0%
!! CTTTTTCTTCACTTTCTTTA+AGG + chr8.3:31967843-31967862 None:intergenic 25.0%
!! TGCTAAAGTTTCTGAAAAAT+TGG - chr8.3:31968325-31968344 MS.gene056511:CDS 25.0%
!!! CTTTCTGTTTTGTTCTTTTT+GGG - chr8.3:31967016-31967035 MS.gene056511:CDS 25.0%
!!! TCTTTCTGTTTTGTTCTTTT+TGG - chr8.3:31967015-31967034 MS.gene056511:CDS 25.0%
AACCAATGAAGAAAGAAAGA+AGG - chr8.3:31967702-31967721 MS.gene056511:CDS 30.0%
AAGAGTTCTCAAATCCAAAT+TGG - chr8.3:31967606-31967625 MS.gene056511:CDS 30.0%
AGAACAAAGAAAAGCTAATG+AGG - chr8.3:31968697-31968716 MS.gene056511:intron 30.0%
AGCTTCAATATTGCTTCAAT+CGG - chr8.3:31967786-31967805 MS.gene056511:CDS 30.0%
AGTTATATATGACTAGGACT+AGG + chr8.3:31966782-31966801 None:intergenic 30.0%
GAAATCATTGTTTCCTTCAA+AGG - chr8.3:31968931-31968950 MS.gene056511:CDS 30.0%
GAATGAAGCAAAAGAGATTA+TGG - chr8.3:31967939-31967958 MS.gene056511:CDS 30.0%
GTTATATATGACTAGGACTA+GGG + chr8.3:31966781-31966800 None:intergenic 30.0%
TTAAGACCAGAATCAGAATT+TGG + chr8.3:31966551-31966570 None:intergenic 30.0%
TTATATATGACTAGGACTAG+GGG + chr8.3:31966780-31966799 None:intergenic 30.0%
TTCCTTCTTTCTTTCTTCAT+TGG + chr8.3:31967707-31967726 None:intergenic 30.0%
TTTCAAATCAAGCAACAAAG+AGG + chr8.3:31967641-31967660 None:intergenic 30.0%
! ATGATTTTATAGTGAGTGGA+AGG - chr8.3:31967341-31967360 MS.gene056511:intron 30.0%
! GAGTATGATTTTATAGTGAG+TGG - chr8.3:31967337-31967356 MS.gene056511:intron 30.0%
! TGATTTTATAGTGAGTGGAA+GGG - chr8.3:31967342-31967361 MS.gene056511:intron 30.0%
!! TAAATAGCGGATATATAGCA+TGG - chr8.3:31966832-31966851 MS.gene056511:CDS 30.0%
!! TAGTTGTTTCTCATTCTTTG+AGG - chr8.3:31966941-31966960 MS.gene056511:CDS 30.0%
AAGAACATGACAACCTTTGA+AGG + chr8.3:31968947-31968966 None:intergenic 35.0%
ACCAAATACAGCTGAAGAAT+TGG - chr8.3:31967075-31967094 MS.gene056511:CDS 35.0%
ACTTCACCAAATTCTGATTC+TGG - chr8.3:31966542-31966561 MS.gene056511:CDS 35.0%
ACTTGTGATTCGCAAAATTG+AGG - chr8.3:31967183-31967202 MS.gene056511:intron 35.0%
AGAAAGAAAGAAGGAACTAG+AGG - chr8.3:31967711-31967730 MS.gene056511:CDS 35.0%
AGCAAGATTGGACATGAATT+TGG - chr8.3:31967049-31967068 MS.gene056511:CDS 35.0%
AGCAGTTTGAGCTAATGATT+TGG + chr8.3:31968013-31968032 None:intergenic 35.0%
AGCTGAGTTAATTGCAACAA+AGG - chr8.3:31967438-31967457 MS.gene056511:CDS 35.0%
ATGAAGAGTTGTGTGTAAGA+AGG - chr8.3:31968582-31968601 MS.gene056511:intron 35.0%
CAAAGCAAACTTAGCTACAT+TGG - chr8.3:31968074-31968093 MS.gene056511:CDS 35.0%
CAAGCAACGCAAAATGAAAT+AGG - chr8.3:31968108-31968127 MS.gene056511:CDS 35.0%
GCATCTTTGACAGATTTCAA+AGG + chr8.3:31966596-31966615 None:intergenic 35.0%
GCTAAGTAAGAGAACTCAAA+AGG - chr8.3:31968460-31968479 MS.gene056511:intron 35.0%
GTAGTAGAGGTAGTATCTAA+AGG + chr8.3:31968821-31968840 None:intergenic 35.0%
TAGAACAAGAGTTGAGAACA+TGG - chr8.3:31968663-31968682 MS.gene056511:intron 35.0%
TCCAATTCTTCAGCTGTATT+TGG + chr8.3:31967079-31967098 None:intergenic 35.0%
TGAACTCGAACAATCAGAAA+AGG - chr8.3:31967549-31967568 MS.gene056511:CDS 35.0%
TGAAGAGTTGTGTGTAAGAA+GGG - chr8.3:31968583-31968602 MS.gene056511:intron 35.0%
TGCAAATTCACAGATTGAGA+TGG - chr8.3:31968514-31968533 MS.gene056511:intron 35.0%
TTCCATATATGCTGCTAACT+CGG + chr8.3:31967665-31967684 None:intergenic 35.0%
! CAATGTAGCTAAGTTTGCTT+TGG + chr8.3:31968076-31968095 None:intergenic 35.0%
! TAAAGGAGATTTTCCCTTTG+AGG + chr8.3:31968804-31968823 None:intergenic 35.0%
!! GTCATTGATTTCGACTCAAA+CGG - chr8.3:31967462-31967481 MS.gene056511:CDS 35.0%
AAAGATGCTGTGTCCAAGTT+TGG - chr8.3:31966608-31966627 MS.gene056511:CDS 40.0%
AACCGAGTTAGCAGCATATA+TGG - chr8.3:31967660-31967679 MS.gene056511:CDS 40.0%
AATGCATAGTGCTGCAGTTT+CGG - chr8.3:31967273-31967292 MS.gene056511:intron 40.0%
AGAGGAAGATGCTTCCAATT+TGG + chr8.3:31967623-31967642 None:intergenic 40.0%
ATCCACTATTCCTCCAAACT+TGG + chr8.3:31966624-31966643 None:intergenic 40.0%
CAAGGAGATTGAAAAAGCAG+TGG - chr8.3:31967405-31967424 MS.gene056511:CDS 40.0%
GGAATCTGAATTGAGAAGCT+TGG - chr8.3:31968541-31968560 MS.gene056511:intron 40.0%
TAAGAGAACTCAAAAGGCTG+AGG - chr8.3:31968466-31968485 MS.gene056511:intron 40.0%
TTCACAGATTGAGATGGCAA+AGG - chr8.3:31968520-31968539 MS.gene056511:intron 40.0%
TTTCATCACCAACCTGACTA+GGG + chr8.3:31966523-31966542 None:intergenic 40.0%
! CATATTGTGCTGATGCAAAG+TGG - chr8.3:31966887-31966906 MS.gene056511:CDS 40.0%
! GGACTAGTGTCGTTAAATAG+CGG - chr8.3:31966819-31966838 MS.gene056511:CDS 40.0%
! TTCAACCTCAAGTTGTGCTT+TGG + chr8.3:31967248-31967267 None:intergenic 40.0%
! TTGTGCTTTGGCTTCAAAAC+TGG + chr8.3:31967236-31967255 None:intergenic 40.0%
! TTTTTCTTTCCATCCGAAGC+TGG + chr8.3:31968902-31968921 None:intergenic 40.0%
!! AGTTTGGAGGAATAGTGGAT+TGG - chr8.3:31966624-31966643 MS.gene056511:CDS 40.0%
!! GATTTTCCCTTTGAGGAGTT+CGG + chr8.3:31968797-31968816 None:intergenic 40.0%
!!! CACTGCTTTTTCAATCTCCT+TGG + chr8.3:31967407-31967426 None:intergenic 40.0%
AATGCTGAGAAAGCTGCAGA+AGG - chr8.3:31968629-31968648 MS.gene056511:intron 45.0%
AGAAGTGAATCTGCTAGAGG+AGG - chr8.3:31968374-31968393 MS.gene056511:CDS 45.0%
AGTTGCAGTAGTGGTAGTAG+AGG + chr8.3:31968834-31968853 None:intergenic 45.0%
CGTAGAAAGAGATGAGCTTC+GGG - chr8.3:31967144-31967163 MS.gene056511:CDS 45.0%
GAGAGAAGTGAATCTGCTAG+AGG - chr8.3:31968371-31968390 MS.gene056511:CDS 45.0%
GATTCGCAAAATTGAGGAGC+TGG - chr8.3:31967189-31967208 MS.gene056511:intron 45.0%
GCGTAGAAAGAGATGAGCTT+CGG - chr8.3:31967143-31967162 MS.gene056511:CDS 45.0%
GCTTCGGGTAAAAGAAGAAG+TGG - chr8.3:31967159-31967178 MS.gene056511:intron 45.0%
GGTGAACAGAGAAGCAAGAT+TGG - chr8.3:31967037-31967056 MS.gene056511:CDS 45.0%
GTCCAAGTTTGGAGGAATAG+TGG - chr8.3:31966619-31966638 MS.gene056511:CDS 45.0%
GTTTCATCACCAACCTGACT+AGG + chr8.3:31966524-31966543 None:intergenic 45.0%
TAGTGCTGCAGTTTCGGAAT+TGG - chr8.3:31967279-31967298 MS.gene056511:intron 45.0%
TCTTCACCGAACTCCTCAAA+GGG - chr8.3:31968788-31968807 MS.gene056511:intron 45.0%
TGAAGCCAAAGCACAACTTG+AGG - chr8.3:31967240-31967259 MS.gene056511:intron 45.0%
TTCATCACCAACCTGACTAG+GGG + chr8.3:31966522-31966541 None:intergenic 45.0%
! CAAAACTGGCTTCATCTGCA+AGG + chr8.3:31967222-31967241 None:intergenic 45.0%
! GCTGCTGCTTGAAGTTTCTT+AGG + chr8.3:31967973-31967992 None:intergenic 45.0%
AACCCGTAGAACTCAGAGTC+TGG - chr8.3:31966649-31966668 MS.gene056511:CDS 50.0%
ACAACCAGAATCCCCTAGTC+AGG - chr8.3:31966508-31966527 MS.gene056511:CDS 50.0%
AGCTGTCATCAATGCTGAGG+AGG - chr8.3:31967369-31967388 MS.gene056511:CDS 50.0%
ATGACTAGGACTAGGGGAAG+TGG + chr8.3:31966774-31966793 None:intergenic 50.0%
CCTCCAGACTCTGAGTTCTA+CGG + chr8.3:31966655-31966674 None:intergenic 50.0%
CGGAGTAGTAGTTGCAGTAG+TGG + chr8.3:31968843-31968862 None:intergenic 50.0%
CTCCAGACTCTGAGTTCTAC+GGG + chr8.3:31966654-31966673 None:intergenic 50.0%
CTCTTCACCGAACTCCTCAA+AGG - chr8.3:31968787-31968806 MS.gene056511:intron 50.0%
GATGCTGTGTCCAAGTTTGG+AGG - chr8.3:31966611-31966630 MS.gene056511:CDS 50.0%
TGCAGCTGTCATCAATGCTG+AGG - chr8.3:31967366-31967385 MS.gene056511:intron 50.0%
TGTTGAAGCTGGACCAGCTT+CGG - chr8.3:31968886-31968905 MS.gene056511:CDS 50.0%
! GAGGAGTTCGGTGAAGAGTT+TGG + chr8.3:31968785-31968804 None:intergenic 50.0%
! TGACTAGGGGATTCTGGTTG+TGG + chr8.3:31966509-31966528 None:intergenic 50.0%
CCAACCTGACTAGGGGATTC+TGG + chr8.3:31966515-31966534 None:intergenic 55.0%
CCAGAATCCCCTAGTCAGGT+TGG - chr8.3:31966512-31966531 MS.gene056511:CDS 55.0%
CCGTAGAACTCAGAGTCTGG+AGG - chr8.3:31966652-31966671 MS.gene056511:CDS 55.0%
GAAGCCGAGGAACAAGCATC+AGG - chr8.3:31967493-31967512 MS.gene056511:CDS 55.0%
GACGCCTGATGCTTGTTCCT+CGG + chr8.3:31967500-31967519 None:intergenic 55.0%
TTCGACTCAAACGGCGCACA+TGG - chr8.3:31967471-31967490 MS.gene056511:CDS 55.0%
GAAGCTGGACCAGCTTCGGA+TGG - chr8.3:31968890-31968909 MS.gene056511:CDS 60.0%
GGAGGCTGTTGCAGCATCCA+AGG - chr8.3:31967387-31967406 MS.gene056511:CDS 60.0%
AACGGCGCACATGGAAGCCG+AGG - chr8.3:31967480-31967499 MS.gene056511:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 31966500 31968997 31966500 ID=MS.gene056511
chr8.3 mRNA 31966500 31968997 31966500 ID=MS.gene056511.t1;Parent=MS.gene056511
chr8.3 exon 31968824 31968997 31968824 ID=MS.gene056511.t1.exon1;Parent=MS.gene056511.t1
chr8.3 CDS 31968824 31968997 31968824 ID=cds.MS.gene056511.t1;Parent=MS.gene056511.t1
chr8.3 exon 31967368 31968451 31967368 ID=MS.gene056511.t1.exon2;Parent=MS.gene056511.t1
chr8.3 CDS 31967368 31968451 31967368 ID=cds.MS.gene056511.t1;Parent=MS.gene056511.t1
chr8.3 exon 31966500 31967176 31966500 ID=MS.gene056511.t1.exon3;Parent=MS.gene056511.t1
chr8.3 CDS 31966500 31967176 31966500 ID=cds.MS.gene056511.t1;Parent=MS.gene056511.t1
Gene Sequence

>MS.gene056511

ATGGAGCCACAACCAGAATCCCCTAGTCAGGTTGGTGATGAAACTTCACCAAATTCTGATTCTGGTCTTAAGAATGTAATTGATACAGCAGCACCTTTGAAATCTGTCAAAGATGCTGTGTCCAAGTTTGGAGGAATAGTGGATTGGAAAACCCGTAGAACTCAGAGTCTGGAGGTATGTCATACTCATAATGTCTTCCTCAAATTATATTCTTGCTTTATACATTTTTCTTCTTAGTTTTGGATTAGTAAGTGATATCATATTATATTTTCCACTTCCCCTAGTCCTAGTCATATATAACTTAATAAAATCTTATAATGGACTAGTGTCGTTAAATAGCGGATATATAGCATGGATGAATTTGAACAAATCGCTATTGTGTCGAAACATATTGTGCTGATGCAAAGTGGATGAATGATATTTTCTCTATTCATTACTTGCTAGTTGTTTCTCATTCTTTGAGGCATGCACAATTTGAAGTCTGAATTCCCTAAACCACATGACTTTTTTTTCTTTCTTTCTGTTTTGTTCTTTTTGGGTGAACAGAGAAGCAAGATTGGACATGAATTTGGAAAACCAAATACAGCTGAAGAATTGGAAAACACTAAGAAACTTACAGAAGAACTCAAACTCAACTTAGAAAGCGTAGAAAGAGATGAGCTTCGGGTAAAAGAAGAAGTGGAACTTGTGATTCGCAAAATTGAGGAGCTGGAGCAAGACCTTGCAGATGAAGCCAGTTTTGAAGCCAAAGCACAACTTGAGGTTGAAAAATCAATGCATAGTGCTGCAGTTTCGGAATTGGAATATTTGAAAAAAGAATTAGACTCTTTAAGGAAAGAGTATGATTTTATAGTGAGTGGAAGGGATGCAGCTGTCATCAATGCTGAGGAGGCTGTTGCAGCATCCAAGGAGATTGAAAAAGCAGTGGAAGATTTAACAGCTGAGTTAATTGCAACAAAGGAGTCATTGATTTCGACTCAAACGGCGCACATGGAAGCCGAGGAACAAGCATCAGGCGTCGTTGATGAAGAAACTCAAAAATATAAGCTTGAACTCGAACAATCAGAAAAGGAGCTAGAGACACTAAATGAACAAGTTTTATCAGCAAGAGTTCTCAAATCCAAATTGGAAGCATCTTCCTCTTTGTTGCTTGATTTGAAAACCGAGTTAGCAGCATATATGGAATCAAAACTAGAAGATGAAACCAATGAAGAAAGAAAGAAGGAACTAGAGGTAGTAAAGATGAACATTGAAAAAACAACTAATGAGGTTAACAGCTTAAGAGAAGCTTCAATATTGCTTCAATCGGAACTAAAAGAAGAAAAGTCAATTCTCAACAACCTTAAAGAAAGTGAAGAAAAAGCTTCTGCTAAAGTCACAAGTCTTCAAGTTGAACTTGAGAAATCAAAATCAGCAATAGCTTTTCTTCAAATGAAAGAGAATGAAGCAAAAGAGATTATGGCTGAGTTACCTAAGAAACTTCAAGCAGCAGCACAAGAAGCTGATGAAGCCAAATCATTAGCTCAAACTGCTCAAGCTCAACTTCTTGAAGCACGAGAAGAAGCTGAAAAAGCCAAAGCAAACTTAGCTACATTGGAAAGTAGATTACAAGCAACGCAAAATGAAATAGGTATTACTGAAATATCTCATCTATTGAAAACTGATAAAAAAGTGATTTTGGTATTCAATAATCTAGAGATTAATTTATACAGAACTTTTAAAAAGAAAGAGTTATTATGTGATTTTGGAAAGTTTAGCTTTAAAAGTGATTTTTTTCACAAATGGGCTCTAATGCTTAACCAACTTTATTTCTAATAATAGGAGCTGCTAAAGTTTCTGAAAAATTGGCTAAAGATTCAATCAAAGCATTGGAGAGAAGTGAATCTGCTAGAGGAGGAAACAACAAAAACGAAGTTGATTCTTCATCTCTTGTGACACTCACATTAGATGAATATCATGAGCTAAGTAAGAGAACTCAAAAGGCTGAGGAACAAGCTAATCTAAGAATTGCAGCTGCAAATTCACAGATTGAGATGGCAAAGGAATCTGAATTGAGAAGCTTGGAGAAGTTAGAAGAACTGAATGAAGAGTTGTGTGTAAGAAGGGAATCACTTAAGATTGCAAATGAGAATGCTGAGAAAGCTGCAGAAGGAAAATCAGCTGTAGAACAAGAGTTGAGAACATGGAGAGCTGAACAAGAACAAAGAAAAGCTAATGAGGTTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCAACTGTGAATGTAAATGATTCACCAAACTCTTCACCGAACTCCTCAAAGGGAAAATCTCCTTTAGATACTACCTCTACTACCACTACTGCAACTACTACTCCGAGTACTGATAATAATAATAATAATGTTGAAGCTGGACCAGCTTCGGATGGAAAGAAAAAGAAGAAGAAGAAATCATTGTTTCCTTCAAAGGTTGTCATGTTCTTTGCAAAGAGAAAAACACATCCAAGCAAGTGA

Protein sequence

>MS.gene056511.t1

MEPQPESPSQVGDETSPNSDSGLKNVIDTAAPLKSVKDAVSKFGGIVDWKTRRTQSLERSKIGHEFGKPNTAEELENTKKLTEELKLNLESVERDELRVKEEVELVIRKIEELEQDLADEASFEAKAQLEVEKSMHSAAVSELEYLKKELDSLRKEYDFIVSGRDAAVINAEEAVAASKEIEKAVEDLTAELIATKESLISTQTAHMEAEEQASGVVDEETQKYKLELEQSEKELETLNEQVLSARVLKSKLEASSSLLLDLKTELAAYMESKLEDETNEERKKELEVVKMNIEKTTNEVNSLREASILLQSELKEEKSILNNLKESEEKASAKVTSLQVELEKSKSAIAFLQMKENEAKEIMAELPKKLQAAAQEADEAKSLAQTAQAQLLEAREEAEKAKANLATLESRLQATQNEIGAAKVSEKLAKDSIKALERSESARGGNNKNEVDSSSLVTLTLDEYHELSKRTQKAEEQANLRIAAANSQIEMAKESELRSLEKLEELNEELCVRRESLKIANENAEKAAEGKSAVEQELRTWRAEQEQRKANEVAAAAAAATAAAAATVNVNDSPNSSPNSSKGKSPLDTTSTTTTATTTPSTDNNNNNVEAGPASDGKKKKKKKSLFPSKVVMFFAKRKTHPSK