Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06926.t1 | XP_003602251.1 | 98.8 | 325 | 3 | 1 | 1 | 325 | 1 | 324 | 2.50E-182 | 647.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06926.t1 | Q9STN8 | 79.9 | 329 | 59 | 3 | 1 | 325 | 1 | 326 | 1.6e-156 | 553.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06926.t1 | A8W463 | 98.8 | 325 | 3 | 1 | 1 | 325 | 1 | 324 | 1.8e-182 | 647.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58445 | MS.gene06926 | PPI |
| MS.gene06926 | MS.gene033134 | PPI |
| MS.gene06926 | MS.gene50990 | PPI |
| MS.gene06926 | MS.gene03589 | PPI |
| MS.gene06926 | MS.gene018958 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06926.t1 | MTR_3g091510 | 98.769 | 325 | 3 | 1 | 1 | 325 | 1 | 324 | 0.0 | 671 |
| MS.gene06926.t1 | MTR_1g008120 | 90.390 | 333 | 24 | 2 | 1 | 325 | 1 | 333 | 0.0 | 617 |
| MS.gene06926.t1 | MTR_8g027520 | 79.692 | 325 | 50 | 4 | 2 | 325 | 9 | 318 | 0.0 | 533 |
| MS.gene06926.t1 | MTR_8g027520 | 79.938 | 324 | 49 | 4 | 3 | 325 | 1 | 309 | 0.0 | 532 |
| MS.gene06926.t1 | MTR_7g117415 | 79.000 | 300 | 50 | 4 | 26 | 325 | 37 | 323 | 8.39e-180 | 500 |
| MS.gene06926.t1 | MTR_3g017590 | 79.630 | 270 | 54 | 1 | 43 | 312 | 36 | 304 | 5.65e-169 | 471 |
| MS.gene06926.t1 | MTR_8g038370 | 76.404 | 267 | 59 | 1 | 50 | 312 | 97 | 363 | 1.00e-160 | 453 |
| MS.gene06926.t1 | MTR_7g093600 | 70.890 | 292 | 75 | 2 | 29 | 311 | 19 | 309 | 3.12e-156 | 439 |
| MS.gene06926.t1 | MTR_1g054335 | 70.103 | 291 | 80 | 2 | 29 | 312 | 19 | 309 | 3.33e-154 | 434 |
| MS.gene06926.t1 | MTR_5g076660 | 28.365 | 208 | 139 | 4 | 62 | 269 | 34 | 231 | 9.31e-20 | 89.0 |
| MS.gene06926.t1 | MTR_7g024290 | 27.619 | 210 | 142 | 4 | 60 | 269 | 10 | 209 | 3.31e-19 | 87.0 |
| MS.gene06926.t1 | MTR_4g094468 | 26.250 | 240 | 154 | 8 | 38 | 272 | 76 | 297 | 7.24e-19 | 86.3 |
| MS.gene06926.t1 | MTR_2g038430 | 30.519 | 154 | 95 | 3 | 36 | 186 | 7 | 151 | 5.90e-18 | 83.6 |
| MS.gene06926.t1 | MTR_5g067400 | 28.436 | 211 | 139 | 5 | 61 | 270 | 11 | 210 | 1.18e-17 | 82.4 |
| MS.gene06926.t1 | MTR_7g094390 | 32.450 | 151 | 93 | 2 | 33 | 176 | 137 | 285 | 2.91e-17 | 82.4 |
| MS.gene06926.t1 | MTR_5g076540 | 32.948 | 173 | 100 | 5 | 60 | 227 | 10 | 171 | 2.36e-16 | 77.8 |
| MS.gene06926.t1 | MTR_5g076720 | 30.405 | 148 | 98 | 2 | 42 | 186 | 63 | 208 | 9.01e-16 | 77.8 |
| MS.gene06926.t1 | MTR_5g061290 | 29.861 | 144 | 95 | 4 | 51 | 193 | 8 | 146 | 2.14e-15 | 76.3 |
| MS.gene06926.t1 | MTR_5g076370 | 26.230 | 244 | 163 | 7 | 62 | 304 | 34 | 261 | 2.96e-15 | 75.9 |
| MS.gene06926.t1 | MTR_5g076520 | 32.768 | 177 | 103 | 5 | 56 | 227 | 6 | 171 | 7.01e-15 | 74.7 |
| MS.gene06926.t1 | MTR_2g038420 | 27.778 | 144 | 101 | 2 | 50 | 193 | 14 | 154 | 2.84e-14 | 72.8 |
| MS.gene06926.t1 | MTR_1g046650 | 35.345 | 116 | 72 | 2 | 61 | 176 | 11 | 123 | 7.30e-14 | 71.6 |
| MS.gene06926.t1 | MTR_1g046650 | 35.345 | 116 | 72 | 2 | 61 | 176 | 42 | 154 | 8.35e-14 | 71.6 |
| MS.gene06926.t1 | MTR_1g046640 | 26.636 | 214 | 136 | 6 | 61 | 269 | 11 | 208 | 8.54e-13 | 68.6 |
| MS.gene06926.t1 | MTR_5g076820 | 25.333 | 225 | 143 | 7 | 53 | 270 | 11 | 217 | 2.66e-12 | 66.6 |
| MS.gene06926.t1 | MTR_5g076505 | 30.128 | 156 | 93 | 5 | 77 | 227 | 23 | 167 | 4.91e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06926.t1 | AT4G27880 | 81.818 | 330 | 51 | 4 | 1 | 325 | 1 | 326 | 0.0 | 555 |
| MS.gene06926.t1 | AT3G61790 | 81.902 | 326 | 55 | 2 | 1 | 323 | 1 | 325 | 0.0 | 550 |
| MS.gene06926.t1 | AT3G58040 | 80.075 | 266 | 53 | 0 | 47 | 312 | 43 | 308 | 3.99e-164 | 459 |
| MS.gene06926.t1 | AT3G58040 | 80.075 | 266 | 53 | 0 | 47 | 312 | 43 | 308 | 3.99e-164 | 459 |
| MS.gene06926.t1 | AT2G41980 | 80.620 | 258 | 50 | 0 | 55 | 312 | 48 | 305 | 4.00e-161 | 452 |
| MS.gene06926.t1 | AT5G53360 | 88.532 | 218 | 24 | 1 | 109 | 325 | 15 | 232 | 2.07e-147 | 414 |
| MS.gene06926.t1 | AT5G53360 | 88.532 | 218 | 24 | 1 | 109 | 325 | 15 | 232 | 2.07e-147 | 414 |
| MS.gene06926.t1 | AT3G58040 | 73.837 | 172 | 42 | 1 | 47 | 215 | 43 | 214 | 1.23e-89 | 267 |
| MS.gene06926.t1 | AT5G53360 | 86.667 | 120 | 15 | 1 | 207 | 325 | 60 | 179 | 4.02e-74 | 226 |
| MS.gene06926.t1 | AT5G53360 | 61.017 | 59 | 10 | 3 | 19 | 77 | 14 | 59 | 5.81e-13 | 66.6 |
| MS.gene06926.t1 | AT3G13672 | 58.333 | 168 | 67 | 1 | 148 | 312 | 45 | 212 | 8.22e-72 | 222 |
| MS.gene06926.t1 | AT3G13672 | 50.769 | 195 | 66 | 2 | 148 | 312 | 45 | 239 | 2.26e-66 | 209 |
| MS.gene06926.t1 | AT5G37870 | 39.844 | 128 | 74 | 2 | 60 | 187 | 41 | 165 | 2.05e-25 | 103 |
| MS.gene06926.t1 | AT5G37930 | 41.322 | 121 | 69 | 1 | 60 | 180 | 109 | 227 | 3.47e-24 | 101 |
| MS.gene06926.t1 | AT5G37890 | 28.340 | 247 | 162 | 6 | 60 | 304 | 47 | 280 | 9.72e-23 | 96.3 |
| MS.gene06926.t1 | AT1G66660 | 41.964 | 112 | 63 | 1 | 60 | 171 | 102 | 211 | 8.13e-21 | 92.0 |
| MS.gene06926.t1 | AT5G62800 | 27.059 | 255 | 158 | 7 | 60 | 304 | 39 | 275 | 1.08e-20 | 91.7 |
| MS.gene06926.t1 | AT1G66650 | 39.496 | 119 | 69 | 2 | 61 | 178 | 83 | 199 | 2.10e-20 | 90.5 |
| MS.gene06926.t1 | AT5G62800 | 27.570 | 214 | 131 | 5 | 60 | 263 | 39 | 238 | 2.20e-20 | 90.1 |
| MS.gene06926.t1 | AT1G66620 | 31.707 | 164 | 100 | 3 | 15 | 176 | 1 | 154 | 1.04e-19 | 88.2 |
| MS.gene06926.t1 | AT5G37910 | 36.364 | 121 | 75 | 1 | 60 | 180 | 34 | 152 | 2.85e-19 | 86.7 |
| MS.gene06926.t1 | AT1G66630 | 35.211 | 142 | 86 | 3 | 42 | 179 | 25 | 164 | 6.01e-19 | 85.9 |
| MS.gene06926.t1 | AT1G66610 | 31.373 | 102 | 67 | 1 | 22 | 123 | 122 | 220 | 2.91e-13 | 68.9 |
| MS.gene06926.t1 | AT1G66610 | 40.299 | 67 | 40 | 0 | 60 | 126 | 52 | 118 | 2.36e-11 | 63.2 |
| MS.gene06926.t1 | AT1G66610 | 42.857 | 63 | 36 | 0 | 60 | 122 | 52 | 114 | 1.46e-11 | 65.1 |
Find 90 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATATCAATAATATTT+TGG | 0.062353 | 3.1:-73448292 | MS.gene06926:CDS |
| CTGTAGTACGGAAAGATTTC+TGG | 0.135696 | 3.1:+73447357 | None:intergenic |
| CATGGCATTCCTTCGGTTTA+TGG | 0.187403 | 3.1:-73446828 | MS.gene06926:CDS |
| CCAATGGCAGGAAACTAATT+TGG | 0.224343 | 3.1:-73446757 | MS.gene06926:CDS |
| TGCCATTGGCCCCAACTTCC+AGG | 0.258310 | 3.1:+73446771 | None:intergenic |
| CTGTTCCTTCCATATTCTTC+CGG | 0.314137 | 3.1:+73446604 | None:intergenic |
| CATGGCTATCCCTAACTTTA+CGG | 0.322991 | 3.1:+73446702 | None:intergenic |
| CCTTCCTCGTTGCTCATTTG+AGG | 0.328243 | 3.1:-73447248 | MS.gene06926:CDS |
| TCTCATCATTCAAAGAAATA+TGG | 0.337511 | 3.1:-73446675 | MS.gene06926:CDS |
| CGAAGGAATGCCATGTAAAC+AGG | 0.339012 | 3.1:+73446836 | None:intergenic |
| GAGATAGCCACCGTAAAGTT+AGG | 0.341144 | 3.1:-73446712 | MS.gene06926:CDS |
| CGAAATGAAGGCAGAAATAT+TGG | 0.345692 | 3.1:+73446882 | None:intergenic |
| CTTCCTCGTTGCTCATTTGA+GGG | 0.347185 | 3.1:-73447247 | MS.gene06926:CDS |
| TGGTAGGTATTTCATTGTTT+CGG | 0.348368 | 3.1:-73446905 | MS.gene06926:intron |
| ATGGCATTCCTTCGGTTTAT+GGG | 0.351962 | 3.1:-73446827 | MS.gene06926:CDS |
| TTAGAGTCACCGGAAGAATA+TGG | 0.353223 | 3.1:-73446613 | MS.gene06926:CDS |
| ACCTCCATTTCTAGCCTTTG+TGG | 0.363878 | 3.1:+73448314 | None:intergenic |
| CCAAATTAGTTTCCTGCCAT+TGG | 0.365498 | 3.1:+73446757 | None:intergenic |
| ACAGCTATAGCCTGGAAGTT+GGG | 0.376210 | 3.1:-73446781 | MS.gene06926:CDS |
| CCAGCATAAGGACAACTATA+AGG | 0.377058 | 3.1:+73447300 | None:intergenic |
| TCTTCCACAAAGGCTAGAAA+TGG | 0.399306 | 3.1:-73448318 | MS.gene06926:CDS |
| GACAAGAGCTTGGAGATATC+AGG | 0.428702 | 3.1:-73447446 | MS.gene06926:CDS |
| AATTCATGAACACTAGTTGC+AGG | 0.434093 | 3.1:+73448252 | None:intergenic |
| TACATTGAATTAGTACAAAC+AGG | 0.438651 | 3.1:+73448219 | None:intergenic |
| CTGTTTACATGGCATTCCTT+CGG | 0.442197 | 3.1:-73446835 | MS.gene06926:CDS |
| TGGAAGTTGGGGCCAATGGC+AGG | 0.450751 | 3.1:-73446769 | MS.gene06926:CDS |
| CCTTATAGTTGTCCTTATGC+TGG | 0.456115 | 3.1:-73447300 | MS.gene06926:CDS |
| CGGCATGGCCCCTGTTTACA+TGG | 0.462475 | 3.1:-73446846 | MS.gene06926:CDS |
| TCATTTGAGGGATGATCATA+AGG | 0.467924 | 3.1:-73447235 | MS.gene06926:CDS |
| GGTTGCATTCTCTACTTCAC+GGG | 0.476035 | 3.1:+73447161 | None:intergenic |
| CAATGGCAGGAAACTAATTT+GGG | 0.476420 | 3.1:-73446756 | MS.gene06926:CDS |
| AATGTACCCTCCAATTCATC+AGG | 0.481409 | 3.1:-73448202 | MS.gene06926:intron |
| AGCCTGGAAGTTGGGGCCAA+TGG | 0.495755 | 3.1:-73446773 | MS.gene06926:CDS |
| TGCTTAAGCTTGCTGTAGTA+CGG | 0.505424 | 3.1:+73447345 | None:intergenic |
| TACAGCTATAGCCTGGAAGT+TGG | 0.506295 | 3.1:-73446782 | MS.gene06926:CDS |
| ACATGTCAACTACATAGATT+AGG | 0.507688 | 3.1:+73446557 | None:intergenic |
| GCTGAAAAGCTTCGAAATGA+AGG | 0.509904 | 3.1:+73446870 | None:intergenic |
| TGTATCATCTTCTGATGGTA+TGG | 0.511646 | 3.1:-73448388 | MS.gene06926:CDS |
| AGATATCAGGTGTCTAGCAC+TGG | 0.513124 | 3.1:-73447433 | MS.gene06926:CDS |
| TGGCTATCTCGAACACTTCG+TGG | 0.517363 | 3.1:+73446725 | None:intergenic |
| TTGGTGAGAGTTGATGGAGT+TGG | 0.518547 | 3.1:-73448424 | None:intergenic |
| AGATAGCCACCGTAAAGTTA+GGG | 0.523812 | 3.1:-73446711 | MS.gene06926:CDS |
| TTTCTCTGGTGGGGATAGGA+AGG | 0.529034 | 3.1:-73446645 | MS.gene06926:CDS |
| TTTGAATGATGAGACCATCA+TGG | 0.537385 | 3.1:+73446684 | None:intergenic |
| AGGTTGCATTCTCTACTTCA+CGG | 0.538145 | 3.1:+73447160 | None:intergenic |
| AAACAGACCTGATGAATTGG+AGG | 0.545037 | 3.1:+73448195 | None:intergenic |
| AACACTTACTGTGAGCATCC+AGG | 0.545362 | 3.1:+73447140 | None:intergenic |
| GAACACTCTGATCCAGCATA+AGG | 0.545667 | 3.1:+73447288 | None:intergenic |
| AACACTAGTTGCAGGAGCAA+TGG | 0.560424 | 3.1:+73448260 | None:intergenic |
| CCGACTTGTAGACAAGAGCT+TGG | 0.568050 | 3.1:-73447456 | MS.gene06926:CDS |
| CCGTGCAAGTACTACTCCCT+CGG | 0.569828 | 3.1:-73447384 | MS.gene06926:CDS |
| GAAGGAATGCCATGTAAACA+GGG | 0.574222 | 3.1:+73446837 | None:intergenic |
| CAGGTGTCTAGCACTGGAGA+AGG | 0.574745 | 3.1:-73447427 | MS.gene06926:CDS |
| CAGCTATAGCCTGGAAGTTG+GGG | 0.575048 | 3.1:-73446780 | MS.gene06926:CDS |
| CCTCAAATGAGCAACGAGGA+AGG | 0.575571 | 3.1:+73447248 | None:intergenic |
| ACGATGGTTGAATGTGCATC+CGG | 0.576887 | 3.1:+73447200 | None:intergenic |
| AAAGTTAGGGATAGCCATGA+TGG | 0.577239 | 3.1:-73446698 | MS.gene06926:CDS |
| GTGTCTAGCACTGGAGAAGG+TGG | 0.582498 | 3.1:-73447424 | MS.gene06926:CDS |
| TCGGAACTACAGCTATAGCC+TGG | 0.593507 | 3.1:-73446789 | MS.gene06926:CDS |
| GGATCAGAGTGTTCCACTGT+TGG | 0.593621 | 3.1:-73447279 | MS.gene06926:CDS |
| TATGTTCCACATGCAAAACA+CGG | 0.594502 | 3.1:-73447494 | MS.gene06926:CDS |
| GAGCTGAAACTTAGAGTCAC+CGG | 0.595016 | 3.1:-73446623 | MS.gene06926:CDS |
| ATCTTCTGATGGTATGGATG+AGG | 0.596017 | 3.1:-73448382 | MS.gene06926:CDS |
| GTTGCAGGAGCAATGGCGGT+AGG | 0.608285 | 3.1:+73448267 | None:intergenic |
| TCCACAAAGGCTAGAAATGG+AGG | 0.618376 | 3.1:-73448315 | MS.gene06926:CDS |
| GTTTCTTTGCAGTGTCACAA+TGG | 0.619032 | 3.1:-73447525 | MS.gene06926:intron |
| GTGAAGTAGAGAATGCAACC+TGG | 0.619430 | 3.1:-73447158 | MS.gene06926:CDS |
| TTTCGTCGCCCATAAACCGA+AGG | 0.621109 | 3.1:+73446819 | None:intergenic |
| GAAAGATTTCTGGACATCCG+AGG | 0.626381 | 3.1:+73447367 | None:intergenic |
| TGGCAGGAAACTAATTTGGG+AGG | 0.629177 | 3.1:-73446753 | MS.gene06926:CDS |
| TGGGCGACGAAAACGAAGCT+CGG | 0.631190 | 3.1:-73446808 | MS.gene06926:CDS |
| CTTGTCTACAAGTCGGACAT+CGG | 0.631341 | 3.1:+73447463 | None:intergenic |
| CATAAGGTGGACATGCACAC+CGG | 0.633944 | 3.1:-73447219 | MS.gene06926:CDS |
| GGCAGGAAACTAATTTGGGA+GGG | 0.633978 | 3.1:-73446752 | MS.gene06926:CDS |
| AGTCACCGGAAGAATATGGA+AGG | 0.634301 | 3.1:-73446609 | MS.gene06926:CDS |
| GATTTGACTTCACATAACGA+TGG | 0.635258 | 3.1:+73447184 | None:intergenic |
| GAAGGAAATATCGCCAACAG+TGG | 0.648090 | 3.1:+73447266 | None:intergenic |
| AAAGATTTCTGGACATCCGA+GGG | 0.649930 | 3.1:+73447368 | None:intergenic |
| AACAGACCTGATGAATTGGA+GGG | 0.650420 | 3.1:+73448196 | None:intergenic |
| CCGAGGGAGTAGTACTTGCA+CGG | 0.651023 | 3.1:+73447384 | None:intergenic |
| CCAAGCTCTTGTCTACAAGT+CGG | 0.654211 | 3.1:+73447456 | None:intergenic |
| ATGTTCCACATGCAAAACAC+GGG | 0.655608 | 3.1:-73447493 | MS.gene06926:CDS |
| GAGTGTGTATCATCTTCTGA+TGG | 0.655768 | 3.1:-73448393 | MS.gene06926:CDS |
| ACTAGTTGCAGGAGCAATGG+CGG | 0.656731 | 3.1:+73448263 | None:intergenic |
| TTTGAGGGATGATCATAAGG+TGG | 0.662444 | 3.1:-73447232 | MS.gene06926:CDS |
| GGCTATCCCTAACTTTACGG+TGG | 0.676596 | 3.1:+73446705 | None:intergenic |
| TGCATGTGGAACATAGTGTG+TGG | 0.716868 | 3.1:+73447502 | None:intergenic |
| GTTGCATTCTCTACTTCACG+GGG | 0.718362 | 3.1:+73447162 | None:intergenic |
| AAGGAATGCCATGTAAACAG+GGG | 0.734985 | 3.1:+73446838 | None:intergenic |
| CATCCCTCAAATGAGCAACG+AGG | 0.739693 | 3.1:+73447244 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAACCATTAAATCTA+TGG | - | chr3.1:73447262-73447281 | MS.gene06926:CDS | 15.0% |
| !!! | ATTTTAACCATTAAATCTAT+GGG | - | chr3.1:73447263-73447282 | MS.gene06926:CDS | 15.0% |
| !!! | GCAAATATCAATAATATTTT+GGG | - | chr3.1:73446682-73446701 | MS.gene06926:CDS | 15.0% |
| !!! | TGCAAATATCAATAATATTT+TGG | - | chr3.1:73446681-73446700 | MS.gene06926:CDS | 15.0% |
| !!! | TTATATTATTTTTCTGTTGA+CGG | - | chr3.1:73447924-73447943 | MS.gene06926:intron | 15.0% |
| !! | TCATAAAAAAAATTAGGAGA+GGG | - | chr3.1:73446863-73446882 | MS.gene06926:CDS | 20.0% |
| !! | TTCATAAAAAAAATTAGGAG+AGG | - | chr3.1:73446862-73446881 | MS.gene06926:CDS | 20.0% |
| !!! | ATTTGAATTGGAAGATTTTA+GGG | - | chr3.1:73446837-73446856 | MS.gene06926:CDS | 20.0% |
| !!! | GGGTTTTCATAAAAAAAATT+AGG | - | chr3.1:73446857-73446876 | MS.gene06926:CDS | 20.0% |
| !!! | TAGTATTTTATCGTTTTAGA+TGG | - | chr3.1:73447861-73447880 | MS.gene06926:intron | 20.0% |
| !!! | TATATTATTTTTCTGTTGAC+GGG | - | chr3.1:73447925-73447944 | MS.gene06926:intron | 20.0% |
| !!! | TTTTAACCATTAAATCTATG+GGG | - | chr3.1:73447264-73447283 | MS.gene06926:CDS | 20.0% |
| ! | AAACCATTTAACCAATCAAA+TGG | + | chr3.1:73447905-73447924 | None:intergenic | 25.0% |
| ! | ATAAAAAAAATTAGGAGAGG+GGG | - | chr3.1:73446865-73446884 | MS.gene06926:CDS | 25.0% |
| ! | ATATTTGTGTACCATTTGAT+TGG | - | chr3.1:73447891-73447910 | MS.gene06926:intron | 25.0% |
| ! | CATAAAAAAAATTAGGAGAG+GGG | - | chr3.1:73446864-73446883 | MS.gene06926:CDS | 25.0% |
| ! | TACATTGAATTAGTACAAAC+AGG | + | chr3.1:73446757-73446776 | None:intergenic | 25.0% |
| ! | TACCAAAACAAAAGTAAAGT+CGG | + | chr3.1:73448053-73448072 | None:intergenic | 25.0% |
| ! | TATCACGATTTCATTTGAAT+TGG | - | chr3.1:73446825-73446844 | MS.gene06926:CDS | 25.0% |
| ! | TCTCATCATTCAAAGAAATA+TGG | - | chr3.1:73448298-73448317 | MS.gene06926:CDS | 25.0% |
| ! | TTTAATGGTTAAAATTTCGC+TGG | + | chr3.1:73447258-73447277 | None:intergenic | 25.0% |
| !! | CATTTGAATTGGAAGATTTT+AGG | - | chr3.1:73446836-73446855 | MS.gene06926:CDS | 25.0% |
| AAAAAACAGACCTGATGAAT+TGG | + | chr3.1:73446784-73446803 | None:intergenic | 30.0% | |
| AAATATTGACAACTGGACAA+TGG | + | chr3.1:73447199-73447218 | None:intergenic | 30.0% | |
| AACATGAGTTAATCAAAGAC+TGG | + | chr3.1:73447330-73447349 | None:intergenic | 30.0% | |
| AATGGTACACAAATATGTTC+CGG | + | chr3.1:73447887-73447906 | None:intergenic | 30.0% | |
| TAAAAAAAATTAGGAGAGGG+GGG | - | chr3.1:73446866-73446885 | MS.gene06926:CDS | 30.0% | |
| TATTCAATGACAACACCATA+AGG | - | chr3.1:73447128-73447147 | MS.gene06926:intron | 30.0% | |
| TGGTAGGTATTTCATTGTTT+CGG | - | chr3.1:73448068-73448087 | MS.gene06926:intron | 30.0% | |
| TTTCCTTGAAATACACTTCT+GGG | + | chr3.1:73447046-73447065 | None:intergenic | 30.0% | |
| ! | AAAAGTGTATGTTTGCCAAA+AGG | - | chr3.1:73447403-73447422 | MS.gene06926:CDS | 30.0% |
| ! | CATATTTTATCCTCACCTTT+TGG | + | chr3.1:73447421-73447440 | None:intergenic | 30.0% |
| ! | GTACCATTTGATTGGTTAAA+TGG | - | chr3.1:73447899-73447918 | MS.gene06926:intron | 30.0% |
| ! | TTTTCCTTGAAATACACTTC+TGG | + | chr3.1:73447047-73447066 | None:intergenic | 30.0% |
| !! | AATATGGCACTATTTTTCTC+TGG | - | chr3.1:73448314-73448333 | MS.gene06926:CDS | 30.0% |
| !! | ATTTTATCGTTTTAGATGGC+CGG | - | chr3.1:73447865-73447884 | MS.gene06926:intron | 30.0% |
| !! | CACTTTTTGTAGCTTAATCA+TGG | + | chr3.1:73447390-73447409 | None:intergenic | 30.0% |
| !!! | GACTTTACTTTTGTTTTGGT+AGG | - | chr3.1:73448052-73448071 | MS.gene06926:intron | 30.0% |
| AATTCATGAACACTAGTTGC+AGG | + | chr3.1:73446724-73446743 | None:intergenic | 35.0% | |
| ACAACACCCCATAGATTTAA+TGG | + | chr3.1:73447273-73447292 | None:intergenic | 35.0% | |
| ATGAGTCTGTAATGTGATTC+AGG | - | chr3.1:73446937-73446956 | MS.gene06926:intron | 35.0% | |
| CAATGGCAGGAAACTAATTT+GGG | - | chr3.1:73448217-73448236 | MS.gene06926:CDS | 35.0% | |
| CGAAATGAAGGCAGAAATAT+TGG | + | chr3.1:73448094-73448113 | None:intergenic | 35.0% | |
| GTATCTTTAATTGAGCTGTG+AGG | - | chr3.1:73447351-73447370 | MS.gene06926:CDS | 35.0% | |
| TAACCTAAGTGAAGTTGAAG+AGG | - | chr3.1:73447084-73447103 | MS.gene06926:intron | 35.0% | |
| TAACCTCTTCAACTTCACTT+AGG | + | chr3.1:73447090-73447109 | None:intergenic | 35.0% | |
| TATGTTCCACATGCAAAACA+CGG | - | chr3.1:73447479-73447498 | MS.gene06926:CDS | 35.0% | |
| TCATTTGAGGGATGATCATA+AGG | - | chr3.1:73447738-73447757 | MS.gene06926:intron | 35.0% | |
| TGCACACAAATATTGACAAC+TGG | + | chr3.1:73447206-73447225 | None:intergenic | 35.0% | |
| TGTATCATCTTCTGATGGTA+TGG | - | chr3.1:73446585-73446604 | MS.gene06926:CDS | 35.0% | |
| TTCCTTGAAATACACTTCTG+GGG | + | chr3.1:73447045-73447064 | None:intergenic | 35.0% | |
| TTTGAATGATGAGACCATCA+TGG | + | chr3.1:73448292-73448311 | None:intergenic | 35.0% | |
| ! | CTCTGAATTTTCTTCCACAA+AGG | - | chr3.1:73446645-73446664 | MS.gene06926:CDS | 35.0% |
| ! | GATGATGATGATGATGTGAA+TGG | + | chr3.1:73446624-73446643 | None:intergenic | 35.0% |
| ! | GATTTGACTTCACATAACGA+TGG | + | chr3.1:73447792-73447811 | None:intergenic | 35.0% |
| !! | TATTCTAAGACTACGCCTTA+TGG | + | chr3.1:73447146-73447165 | None:intergenic | 35.0% |
| !!! | TGCCGACTTTACTTTTGTTT+TGG | - | chr3.1:73448048-73448067 | MS.gene06926:intron | 35.0% |
| AAACAGACCTGATGAATTGG+AGG | + | chr3.1:73446781-73446800 | None:intergenic | 40.0% | |
| AAAGTTAGGGATAGCCATGA+TGG | - | chr3.1:73448275-73448294 | MS.gene06926:CDS | 40.0% | |
| AACAGACCTGATGAATTGGA+GGG | + | chr3.1:73446780-73446799 | None:intergenic | 40.0% | |
| AAGGAATGCCATGTAAACAG+GGG | + | chr3.1:73448138-73448157 | None:intergenic | 40.0% | |
| AATGTACCCTCCAATTCATC+AGG | - | chr3.1:73446771-73446790 | MS.gene06926:CDS | 40.0% | |
| AGATAGCCACCGTAAAGTTA+GGG | - | chr3.1:73448262-73448281 | MS.gene06926:CDS | 40.0% | |
| AGGTTGCATTCTCTACTTCA+CGG | + | chr3.1:73447816-73447835 | None:intergenic | 40.0% | |
| ATCTTCTGATGGTATGGATG+AGG | - | chr3.1:73446591-73446610 | MS.gene06926:CDS | 40.0% | |
| ATGGCATTCCTTCGGTTTAT+GGG | - | chr3.1:73448146-73448165 | MS.gene06926:intron | 40.0% | |
| ATGTTCCACATGCAAAACAC+GGG | - | chr3.1:73447480-73447499 | MS.gene06926:CDS | 40.0% | |
| CAGAAGAATCAGAGAAAGTG+AGG | + | chr3.1:73448026-73448045 | None:intergenic | 40.0% | |
| CATGGCTATCCCTAACTTTA+CGG | + | chr3.1:73448274-73448293 | None:intergenic | 40.0% | |
| CCAATGGCAGGAAACTAATT+TGG | - | chr3.1:73448216-73448235 | MS.gene06926:CDS | 40.0% | |
| CCAGCATAAGGACAACTATA+AGG | + | chr3.1:73447676-73447695 | None:intergenic | 40.0% | |
| CCTTATAGTTGTCCTTATGC+TGG | - | chr3.1:73447673-73447692 | MS.gene06926:intron | 40.0% | |
| CTGTAGTACGGAAAGATTTC+TGG | + | chr3.1:73447619-73447638 | None:intergenic | 40.0% | |
| CTGTTCCTTCCATATTCTTC+CGG | + | chr3.1:73448372-73448391 | None:intergenic | 40.0% | |
| CTGTTTACATGGCATTCCTT+CGG | - | chr3.1:73448138-73448157 | MS.gene06926:intron | 40.0% | |
| GAAGGAATGCCATGTAAACA+GGG | + | chr3.1:73448139-73448158 | None:intergenic | 40.0% | |
| GAGTGTGTATCATCTTCTGA+TGG | - | chr3.1:73446580-73446599 | MS.gene06926:CDS | 40.0% | |
| GCTGAAAAGCTTCGAAATGA+AGG | + | chr3.1:73448106-73448125 | None:intergenic | 40.0% | |
| GTCTGTAATGTGATTCAGGT+TGG | - | chr3.1:73446941-73446960 | MS.gene06926:intron | 40.0% | |
| GTTTCTTTGCAGTGTCACAA+TGG | - | chr3.1:73447448-73447467 | MS.gene06926:CDS | 40.0% | |
| TCTTCCACAAAGGCTAGAAA+TGG | - | chr3.1:73446655-73446674 | MS.gene06926:CDS | 40.0% | |
| TGTATGTTTGCCAAAAGGTG+AGG | - | chr3.1:73447408-73447427 | MS.gene06926:CDS | 40.0% | |
| TTAGAGTCACCGGAAGAATA+TGG | - | chr3.1:73448360-73448379 | MS.gene06926:CDS | 40.0% | |
| TTTGAGGGATGATCATAAGG+TGG | - | chr3.1:73447741-73447760 | MS.gene06926:intron | 40.0% | |
| ! | AAAGATTTCTGGACATCCGA+GGG | + | chr3.1:73447608-73447627 | None:intergenic | 40.0% |
| ! | CATTTCGAAGCTTTTCAGCT+CGG | - | chr3.1:73448107-73448126 | MS.gene06926:intron | 40.0% |
| ! | CCAAATTAGTTTCCTGCCAT+TGG | + | chr3.1:73448219-73448238 | None:intergenic | 40.0% |
| ! | TATTTTTCTCTGGTGGGGAT+AGG | - | chr3.1:73448324-73448343 | MS.gene06926:CDS | 40.0% |
| !! | ATGGCACTATTTTTCTCTGG+TGG | - | chr3.1:73448317-73448336 | MS.gene06926:CDS | 40.0% |
| !! | CAGGTTGGTTATGTCAAGTT+TGG | - | chr3.1:73446956-73446975 | MS.gene06926:intron | 40.0% |
| !! | TGCTTAAGCTTGCTGTAGTA+CGG | + | chr3.1:73447631-73447650 | None:intergenic | 40.0% |
| !! | TGGCACTATTTTTCTCTGGT+GGG | - | chr3.1:73448318-73448337 | MS.gene06926:CDS | 40.0% |
| AACACTAGTTGCAGGAGCAA+TGG | + | chr3.1:73446716-73446735 | None:intergenic | 45.0% | |
| AACACTTACTGTGAGCATCC+AGG | + | chr3.1:73447836-73447855 | None:intergenic | 45.0% | |
| ACAGCTATAGCCTGGAAGTT+GGG | - | chr3.1:73448192-73448211 | MS.gene06926:intron | 45.0% | |
| ACGATGGTTGAATGTGCATC+CGG | + | chr3.1:73447776-73447795 | None:intergenic | 45.0% | |
| AGATATCAGGTGTCTAGCAC+TGG | - | chr3.1:73447540-73447559 | MS.gene06926:intron | 45.0% | |
| AGATTACATGTTGCAGCGAG+AGG | + | chr3.1:73447983-73448002 | None:intergenic | 45.0% | |
| AGTCACCGGAAGAATATGGA+AGG | - | chr3.1:73448364-73448383 | MS.gene06926:CDS | 45.0% | |
| CATGGCATTCCTTCGGTTTA+TGG | - | chr3.1:73448145-73448164 | MS.gene06926:intron | 45.0% | |
| CCAAGCTCTTGTCTACAAGT+CGG | + | chr3.1:73447520-73447539 | None:intergenic | 45.0% | |
| CGAAGGAATGCCATGTAAAC+AGG | + | chr3.1:73448140-73448159 | None:intergenic | 45.0% | |
| CTTCCTCGTTGCTCATTTGA+GGG | - | chr3.1:73447726-73447745 | MS.gene06926:intron | 45.0% | |
| CTTGTCTACAAGTCGGACAT+CGG | + | chr3.1:73447513-73447532 | None:intergenic | 45.0% | |
| GAACACTCTGATCCAGCATA+AGG | + | chr3.1:73447688-73447707 | None:intergenic | 45.0% | |
| GAAGGAAATATCGCCAACAG+TGG | + | chr3.1:73447710-73447729 | None:intergenic | 45.0% | |
| GACAAGAGCTTGGAGATATC+AGG | - | chr3.1:73447527-73447546 | MS.gene06926:intron | 45.0% | |
| GAGATAGCCACCGTAAAGTT+AGG | - | chr3.1:73448261-73448280 | MS.gene06926:CDS | 45.0% | |
| GAGCTGAAACTTAGAGTCAC+CGG | - | chr3.1:73448350-73448369 | MS.gene06926:CDS | 45.0% | |
| GATTACATGTTGCAGCGAGA+GGG | + | chr3.1:73447982-73448001 | None:intergenic | 45.0% | |
| GGCAGGAAACTAATTTGGGA+GGG | - | chr3.1:73448221-73448240 | MS.gene06926:CDS | 45.0% | |
| GGTTGCATTCTCTACTTCAC+GGG | + | chr3.1:73447815-73447834 | None:intergenic | 45.0% | |
| GTGAAGTAGAGAATGCAACC+TGG | - | chr3.1:73447815-73447834 | MS.gene06926:intron | 45.0% | |
| GTTGCATTCTCTACTTCACG+GGG | + | chr3.1:73447814-73447833 | None:intergenic | 45.0% | |
| TACAGCTATAGCCTGGAAGT+TGG | - | chr3.1:73448191-73448210 | MS.gene06926:intron | 45.0% | |
| TCCACAAAGGCTAGAAATGG+AGG | - | chr3.1:73446658-73446677 | MS.gene06926:CDS | 45.0% | |
| TCGCTGGATTCACTATTGTG+TGG | + | chr3.1:73447242-73447261 | None:intergenic | 45.0% | |
| TGCATGTGGAACATAGTGTG+TGG | + | chr3.1:73447474-73447493 | None:intergenic | 45.0% | |
| TGGCAGGAAACTAATTTGGG+AGG | - | chr3.1:73448220-73448239 | MS.gene06926:CDS | 45.0% | |
| ! | CACCCCAGAAGTGTATTTCA+AGG | - | chr3.1:73447040-73447059 | MS.gene06926:intron | 45.0% |
| ! | GAAAGATTTCTGGACATCCG+AGG | + | chr3.1:73447609-73447628 | None:intergenic | 45.0% |
| !! | ACCTCCATTTCTAGCCTTTG+TGG | + | chr3.1:73446662-73446681 | None:intergenic | 45.0% |
| !! | ATACACTTCTGGGGTGCATT+AGG | + | chr3.1:73447036-73447055 | None:intergenic | 45.0% |
| !! | GGCACTATTTTTCTCTGGTG+GGG | - | chr3.1:73448319-73448338 | MS.gene06926:CDS | 45.0% |
| ACTAGTTGCAGGAGCAATGG+CGG | + | chr3.1:73446713-73446732 | None:intergenic | 50.0% | |
| CAGCTATAGCCTGGAAGTTG+GGG | - | chr3.1:73448193-73448212 | MS.gene06926:intron | 50.0% | |
| CATAAGGTGGACATGCACAC+CGG | - | chr3.1:73447754-73447773 | MS.gene06926:intron | 50.0% | |
| CATCCCTCAAATGAGCAACG+AGG | + | chr3.1:73447732-73447751 | None:intergenic | 50.0% | |
| CCTCAAATGAGCAACGAGGA+AGG | + | chr3.1:73447728-73447747 | None:intergenic | 50.0% | |
| CCTTCCTCGTTGCTCATTTG+AGG | - | chr3.1:73447725-73447744 | MS.gene06926:intron | 50.0% | |
| GGCTATCCCTAACTTTACGG+TGG | + | chr3.1:73448271-73448290 | None:intergenic | 50.0% | |
| TCGGAACTACAGCTATAGCC+TGG | - | chr3.1:73448184-73448203 | MS.gene06926:intron | 50.0% | |
| TGGCTATCTCGAACACTTCG+TGG | + | chr3.1:73448251-73448270 | None:intergenic | 50.0% | |
| TTTCGTCGCCCATAAACCGA+AGG | + | chr3.1:73448157-73448176 | None:intergenic | 50.0% | |
| TTTCTCTGGTGGGGATAGGA+AGG | - | chr3.1:73448328-73448347 | MS.gene06926:CDS | 50.0% | |
| ! | ATGCACCCGTGTTTTGCATG+TGG | + | chr3.1:73447488-73447507 | None:intergenic | 50.0% |
| ! | CCGACTTGTAGACAAGAGCT+TGG | - | chr3.1:73447517-73447536 | MS.gene06926:intron | 50.0% |
| ! | GAGAGGGGGGTACATTTGAA+TGG | - | chr3.1:73446879-73446898 | MS.gene06926:CDS | 50.0% |
| ! | GGATCAGAGTGTTCCACTGT+TGG | - | chr3.1:73447694-73447713 | MS.gene06926:intron | 50.0% |
| CCGAGGGAGTAGTACTTGCA+CGG | + | chr3.1:73447592-73447611 | None:intergenic | 55.0% | |
| CCGTGCAAGTACTACTCCCT+CGG | - | chr3.1:73447589-73447608 | MS.gene06926:intron | 55.0% | |
| TGGGCGACGAAAACGAAGCT+CGG | - | chr3.1:73448165-73448184 | MS.gene06926:intron | 55.0% | |
| ! | CAGGTGTCTAGCACTGGAGA+AGG | - | chr3.1:73447546-73447565 | MS.gene06926:intron | 55.0% |
| ! | CGAAGCTTTTCAGCTCGGCA+TGG | - | chr3.1:73448112-73448131 | MS.gene06926:intron | 55.0% |
| ! | CTGTTGACGGGTGACAGATG+AGG | - | chr3.1:73447937-73447956 | MS.gene06926:intron | 55.0% |
| ! | GTGTCTAGCACTGGAGAAGG+TGG | - | chr3.1:73447549-73447568 | MS.gene06926:intron | 55.0% |
| AGCCTGGAAGTTGGGGCCAA+TGG | - | chr3.1:73448200-73448219 | MS.gene06926:intron | 60.0% | |
| CGGCATGGCCCCTGTTTACA+TGG | - | chr3.1:73448127-73448146 | MS.gene06926:intron | 60.0% | |
| GTTGCAGGAGCAATGGCGGT+AGG | + | chr3.1:73446709-73446728 | None:intergenic | 60.0% | |
| TGCCATTGGCCCCAACTTCC+AGG | + | chr3.1:73448205-73448224 | None:intergenic | 60.0% | |
| TGGAAGTTGGGGCCAATGGC+AGG | - | chr3.1:73448204-73448223 | MS.gene06926:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73446562 | 73448433 | 73446562 | ID=MS.gene06926 |
| chr3.1 | mRNA | 73446562 | 73448433 | 73446562 | ID=MS.gene06926.t1;Parent=MS.gene06926 |
| chr3.1 | exon | 73448203 | 73448433 | 73448203 | ID=MS.gene06926.t1.exon1;Parent=MS.gene06926.t1 |
| chr3.1 | CDS | 73448203 | 73448433 | 73448203 | ID=cds.MS.gene06926.t1;Parent=MS.gene06926.t1 |
| chr3.1 | exon | 73447149 | 73447535 | 73447149 | ID=MS.gene06926.t1.exon2;Parent=MS.gene06926.t1 |
| chr3.1 | CDS | 73447149 | 73447535 | 73447149 | ID=cds.MS.gene06926.t1;Parent=MS.gene06926.t1 |
| chr3.1 | exon | 73446562 | 73446921 | 73446562 | ID=MS.gene06926.t1.exon3;Parent=MS.gene06926.t1 |
| chr3.1 | CDS | 73446562 | 73446921 | 73446562 | ID=cds.MS.gene06926.t1;Parent=MS.gene06926.t1 |
| Gene Sequence |
| Protein sequence |
