Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069326.t1 | XP_024635456.1 | 64 | 272 | 53 | 1 | 1 | 227 | 712 | 983 | 5.40E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069326.t1 | Q9LRR5 | 25.1 | 267 | 145 | 6 | 15 | 230 | 602 | 864 | 5.2e-10 | 66.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069326.t1 | G7J1T6 | 64.0 | 272 | 53 | 1 | 1 | 227 | 593 | 864 | 3.9e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049586 | MS.gene069326 | 0.803008 | 4.28E-49 | -1.69E-46 |
| MS.gene050633 | MS.gene069326 | 0.800466 | 1.42E-48 | -1.69E-46 |
| MS.gene05132 | MS.gene069326 | 0.802421 | 5.66E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene069326 | 0.829697 | 4.45E-55 | -1.69E-46 |
| MS.gene053147 | MS.gene069326 | 0.827727 | 1.33E-54 | -1.69E-46 |
| MS.gene054291 | MS.gene069326 | -0.815973 | 7.02E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene069326 | 0.821174 | 4.65E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene069326 | 0.829846 | 4.10E-55 | -1.69E-46 |
| MS.gene054581 | MS.gene069326 | 0.830368 | 3.06E-55 | -1.69E-46 |
| MS.gene058515 | MS.gene069326 | 0.805759 | 1.14E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene069326 | 0.82633 | 2.88E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAACAATTCTTATTAA+AGG | 0.161217 | 3.3:-8679464 | MS.gene069326:CDS |
| TTTCTTGTCCCTTAATGTTT+TGG | 0.191323 | 3.3:-8679048 | MS.gene069326:CDS |
| TCTCAAATTCCAAAACATTA+AGG | 0.204071 | 3.3:+8679039 | None:intergenic |
| GAATTACATTTGATGTTTAA+TGG | 0.228010 | 3.3:-8679374 | MS.gene069326:CDS |
| ATCATTGGTGAAGAGATTTA+TGG | 0.237869 | 3.3:-8679092 | MS.gene069326:CDS |
| ATGACGTAAATTGATGAGTT+TGG | 0.300845 | 3.3:+8679637 | None:intergenic |
| ATGGAACAATTCTTATTAAA+GGG | 0.341126 | 3.3:-8679463 | MS.gene069326:CDS |
| CTCAAATTCCAAAACATTAA+GGG | 0.345092 | 3.3:+8679040 | None:intergenic |
| GAGGAGTGGTTGTGTCTTGA+AGG | 0.347121 | 3.3:-8679002 | MS.gene069326:CDS |
| TAATTTGCAAACGCTCTTGC+TGG | 0.357478 | 3.3:-8679699 | MS.gene069326:CDS |
| ACAATTCTTATTAAAGGGTT+GGG | 0.377230 | 3.3:-8679458 | MS.gene069326:CDS |
| AAATTTATTGAAAGAGCATT+TGG | 0.379639 | 3.3:-8676172 | MS.gene069326:CDS |
| AAAGAAGATGCCAAAGCATA+TGG | 0.384120 | 3.3:-8679579 | MS.gene069326:CDS |
| TTTATTGTGGAAGAGCATAA+TGG | 0.395467 | 3.3:-8679524 | MS.gene069326:CDS |
| AATTTGAGAAGATGAACAAT+TGG | 0.397443 | 3.3:-8679025 | MS.gene069326:CDS |
| GCAAAACTAAACCATCTTCA+TGG | 0.412227 | 3.3:-8679482 | MS.gene069326:CDS |
| TAAGAATTGTTCCATGAAGA+TGG | 0.413631 | 3.3:+8679471 | None:intergenic |
| AACAATTCTTATTAAAGGGT+TGG | 0.420241 | 3.3:-8679459 | MS.gene069326:CDS |
| TACAACATACAAATGCTATC+AGG | 0.426716 | 3.3:+8679722 | None:intergenic |
| ATGCAATGTGTCTGCCTTGG+AGG | 0.430292 | 3.3:-8679318 | MS.gene069326:CDS |
| ACCTTCTAATGCTCAACAAC+AGG | 0.440393 | 3.3:+8676126 | None:intergenic |
| AGGAGTGGTTGTGTCTTGAA+GGG | 0.443096 | 3.3:-8679001 | MS.gene069326:intron |
| TAATGGTACAAGAAAAGAAA+TGG | 0.445820 | 3.3:-8679357 | MS.gene069326:CDS |
| ATTTGAGAAGATGAACAATT+GGG | 0.458403 | 3.3:-8679024 | MS.gene069326:CDS |
| AAGCATATCACTTGTAAACT+TGG | 0.463554 | 3.3:+8676216 | None:intergenic |
| CTTCCACAATAAAATATGAC+AGG | 0.480397 | 3.3:+8679534 | None:intergenic |
| TTGGCTGTCGCAGCATCTGC+AGG | 0.497176 | 3.3:+8679422 | None:intergenic |
| CTAGTGCCTCTATAATCACT+TGG | 0.499629 | 3.3:+8679605 | None:intergenic |
| GTGTGGTCTCTCAGAGCTAG+TGG | 0.500904 | 3.3:-8679810 | None:intergenic |
| AATCAAATAGCAACTTGAAG+AGG | 0.513090 | 3.3:-8679289 | MS.gene069326:CDS |
| ATTACCTTTGTATTGTGAGA+TGG | 0.513262 | 3.3:+8679262 | None:intergenic |
| TGGATCTGATCTTAAAGAGT+TGG | 0.523665 | 3.3:-8679504 | MS.gene069326:CDS |
| TGTGATGGAATAAAGATCAT+TGG | 0.527868 | 3.3:-8679107 | MS.gene069326:CDS |
| AAGAAGATGCCAAAGCATAT+GGG | 0.531018 | 3.3:-8679578 | MS.gene069326:CDS |
| CTTTCTATTTCAGAATGTGA+TGG | 0.531653 | 3.3:-8679122 | MS.gene069326:intron |
| TTCTAATCTCAGTGTATGAA+AGG | 0.540446 | 3.3:+8679750 | None:intergenic |
| AGATGAACAATTGGGAGGAG+TGG | 0.545139 | 3.3:-8679016 | MS.gene069326:CDS |
| TGAATGCAATGTGTCTGCCT+TGG | 0.563279 | 3.3:-8679321 | MS.gene069326:CDS |
| AAAACATTAAGGGACAAGAA+AGG | 0.572567 | 3.3:+8679050 | None:intergenic |
| GAACTCCCAAGTGATTATAG+AGG | 0.573559 | 3.3:-8679611 | MS.gene069326:CDS |
| TTGCAAACGCTCTTGCTGGA+AGG | 0.580793 | 3.3:-8679695 | MS.gene069326:CDS |
| ATTTGATTGAAGAGCCTCCA+AGG | 0.584329 | 3.3:+8679304 | None:intergenic |
| GTGTGTCTGTGCAGAAAACA+CGG | 0.598299 | 3.3:-8676431 | MS.gene069326:intron |
| GGTACAAGAAAAGAAATGGA+TGG | 0.603213 | 3.3:-8679353 | MS.gene069326:CDS |
| TGAGAAGATGAACAATTGGG+AGG | 0.609605 | 3.3:-8679021 | MS.gene069326:CDS |
| TAGTGCCTCTATAATCACTT+GGG | 0.620309 | 3.3:+8679606 | None:intergenic |
| ATTGAGAGATTTATGCACAA+AGG | 0.627866 | 3.3:-8676354 | MS.gene069326:intron |
| CTTACCATCTCACAATACAA+AGG | 0.659744 | 3.3:-8679266 | MS.gene069326:intron |
| TTCCACAATAAAATATGACA+GGG | 0.667719 | 3.3:+8679535 | None:intergenic |
| TGTGTCTGTGCAGAAAACAC+GGG | 0.709720 | 3.3:-8676430 | MS.gene069326:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAAAAAAATA+TGG | + | chr3.3:8678500-8678519 | None:intergenic | 0.0% |
| !! | AAGATAAAAAAAATAAAAGT+CGG | + | chr3.3:8679044-8679063 | None:intergenic | 10.0% |
| !! | TATTATGTTATGTATTTAAA+CGG | - | chr3.3:8678945-8678964 | MS.gene069326:intron | 10.0% |
| !! | TTTAAACTTTAATACAAAAA+TGG | - | chr3.3:8678545-8678564 | MS.gene069326:intron | 10.0% |
| !! | GTTAAAAGAAAAATAGAATA+TGG | + | chr3.3:8678156-8678175 | None:intergenic | 15.0% |
| !!! | AAAAATCACAATTTTGAATA+TGG | + | chr3.3:8678279-8678298 | None:intergenic | 15.0% |
| !!! | AACAAATTTGTTTTTTTTAC+AGG | - | chr3.3:8679674-8679693 | MS.gene069326:CDS | 15.0% |
| !!! | TATTCTATTTTTCTTTTAAC+TGG | - | chr3.3:8678156-8678175 | MS.gene069326:intron | 15.0% |
| !! | ATGGAACAATTCTTATTAAA+GGG | - | chr3.3:8676471-8676490 | MS.gene069326:intron | 20.0% |
| !! | GAAATTAGAGAATCTATATT+AGG | + | chr3.3:8678410-8678429 | None:intergenic | 20.0% |
| !! | GAATTACATTTGATGTTTAA+TGG | - | chr3.3:8676560-8676579 | MS.gene069326:intron | 20.0% |
| !! | TAAAGATTGTCCAATAATAA+AGG | - | chr3.3:8677759-8677778 | MS.gene069326:intron | 20.0% |
| !! | TATTTATAATTGCAACAAGT+TGG | - | chr3.3:8677045-8677064 | MS.gene069326:intron | 20.0% |
| !! | TCTATAATATTATCACTCTT+GGG | + | chr3.3:8677082-8677101 | None:intergenic | 20.0% |
| !! | TTAGTATCTCTTAAACTAAA+GGG | - | chr3.3:8676734-8676753 | MS.gene069326:intron | 20.0% |
| !!! | AAATTTATTGAAAGAGCATT+TGG | - | chr3.3:8679762-8679781 | MS.gene069326:CDS | 20.0% |
| !!! | ACAAATTTGTTAGTATTTTC+TGG | + | chr3.3:8679665-8679684 | None:intergenic | 20.0% |
| !!! | ATATTCAGTTTTTGTAAAGA+AGG | + | chr3.3:8677028-8677047 | None:intergenic | 20.0% |
| !!! | ATGCTTCTTATCTTTTAAAT+TGG | + | chr3.3:8676534-8676553 | None:intergenic | 20.0% |
| !!! | TACTAATTGTTAGTATTTTC+TGG | + | chr3.3:8678443-8678462 | None:intergenic | 20.0% |
| !!! | TGAAAACAAAAATGTTTTTG+AGG | - | chr3.3:8679556-8679575 | MS.gene069326:CDS | 20.0% |
| ! | AAATTCTAGATGCAATTGTT+TGG | + | chr3.3:8677978-8677997 | None:intergenic | 25.0% |
| ! | AACAATTCTTATTAAAGGGT+TGG | - | chr3.3:8676475-8676494 | MS.gene069326:intron | 25.0% |
| ! | AATTTGAGAAGATGAACAAT+TGG | - | chr3.3:8676909-8676928 | MS.gene069326:intron | 25.0% |
| ! | ACAATTCTTATTAAAGGGTT+GGG | - | chr3.3:8676476-8676495 | MS.gene069326:intron | 25.0% |
| ! | AGGGAAAATTGATTAAACTT+TGG | + | chr3.3:8677207-8677226 | None:intergenic | 25.0% |
| ! | AGTTTAAGAGATACTAAGTT+GGG | + | chr3.3:8676731-8676750 | None:intergenic | 25.0% |
| ! | ATATAAAGCTCTTTAAGCAA+AGG | + | chr3.3:8676962-8676981 | None:intergenic | 25.0% |
| ! | ATATGGTAATTTACTTGAAG+AGG | + | chr3.3:8678139-8678158 | None:intergenic | 25.0% |
| ! | ATGAGTTTGGAAAAATTTGA+TGG | + | chr3.3:8676287-8676306 | None:intergenic | 25.0% |
| ! | ATTTGAGAAGATGAACAATT+GGG | - | chr3.3:8676910-8676929 | MS.gene069326:intron | 25.0% |
| ! | CATGGAACAATTCTTATTAA+AGG | - | chr3.3:8676470-8676489 | MS.gene069326:intron | 25.0% |
| ! | CTAAGAATAATGAACAACAA+GGG | - | chr3.3:8677628-8677647 | MS.gene069326:intron | 25.0% |
| ! | CTAGTTGTAAATACAGATAA+AGG | + | chr3.3:8679264-8679283 | None:intergenic | 25.0% |
| ! | CTCAAATTCCAAAACATTAA+GGG | + | chr3.3:8676897-8676916 | None:intergenic | 25.0% |
| ! | CTCTATAATATTATCACTCT+TGG | + | chr3.3:8677083-8677102 | None:intergenic | 25.0% |
| ! | CTTAGTATCTCTTAAACTAA+AGG | - | chr3.3:8676733-8676752 | MS.gene069326:intron | 25.0% |
| ! | TAATGGTACAAGAAAAGAAA+TGG | - | chr3.3:8676577-8676596 | MS.gene069326:intron | 25.0% |
| ! | TAGTTTAAGAGATACTAAGT+TGG | + | chr3.3:8676732-8676751 | None:intergenic | 25.0% |
| ! | TATATAAAGGAAACTCAAGT+TGG | + | chr3.3:8677437-8677456 | None:intergenic | 25.0% |
| ! | TCATACTTCTCCTTTATTAT+TGG | + | chr3.3:8677772-8677791 | None:intergenic | 25.0% |
| ! | TCTCAAATTCCAAAACATTA+AGG | + | chr3.3:8676898-8676917 | None:intergenic | 25.0% |
| ! | TGAAAGTTCACAAATCAAAT+TGG | - | chr3.3:8679066-8679085 | MS.gene069326:CDS | 25.0% |
| ! | TGAGTTTGGAAAAATTTGAT+GGG | + | chr3.3:8676286-8676305 | None:intergenic | 25.0% |
| ! | TGATTGAAACTAGTAATTGA+CGG | - | chr3.3:8678203-8678222 | MS.gene069326:intron | 25.0% |
| ! | TTCCACAATAAAATATGACA+GGG | + | chr3.3:8676402-8676421 | None:intergenic | 25.0% |
| ! | TTGGACAATTCTCTATATAA+AGG | + | chr3.3:8677450-8677469 | None:intergenic | 25.0% |
| !! | AATAAAGGAGAAGTATGAAA+AGG | - | chr3.3:8677774-8677793 | MS.gene069326:intron | 25.0% |
| !! | ATAAAGGAGAAGTATGAAAA+GGG | - | chr3.3:8677775-8677794 | MS.gene069326:intron | 25.0% |
| !! | ATGTATAGCTTTTACATCAA+TGG | - | chr3.3:8678093-8678112 | MS.gene069326:intron | 25.0% |
| !!! | AAATCAAATTGGTTTTCGTA+CGG | - | chr3.3:8679077-8679096 | MS.gene069326:CDS | 25.0% |
| !!! | AGCTTTGAACAATTAAACAA+AGG | + | chr3.3:8677610-8677629 | None:intergenic | 25.0% |
| AAAACATTAAGGGACAAGAA+AGG | + | chr3.3:8676887-8676906 | None:intergenic | 30.0% | |
| AACTACATTTCCACATTTCA+TGG | - | chr3.3:8678588-8678607 | MS.gene069326:intron | 30.0% | |
| AAGCATATCACTTGTAAACT+TGG | + | chr3.3:8679721-8679740 | None:intergenic | 30.0% | |
| AAGGTAATAGCTTTCCAAAT+TGG | - | chr3.3:8676687-8676706 | MS.gene069326:intron | 30.0% | |
| AATCAAATAGCAACTTGAAG+AGG | - | chr3.3:8676645-8676664 | MS.gene069326:intron | 30.0% | |
| AATGTGATTAACCAGAATAG+GGG | + | chr3.3:8678248-8678267 | None:intergenic | 30.0% | |
| AATGTTTCAAGGAATTGAGT+TGG | + | chr3.3:8677507-8677526 | None:intergenic | 30.0% | |
| AATTCGTTAATCTCCACATA+AGG | + | chr3.3:8679294-8679313 | None:intergenic | 30.0% | |
| ACATATGGATACTTGACTAT+TGG | - | chr3.3:8679369-8679388 | MS.gene069326:CDS | 30.0% | |
| ACGTTAAAGAGACCAAAAAA+GGG | + | chr3.3:8679462-8679481 | None:intergenic | 30.0% | |
| AGAATGTGATTAACCAGAAT+AGG | + | chr3.3:8678250-8678269 | None:intergenic | 30.0% | |
| AGGATATATGTTTGTACCTT+CGG | + | chr3.3:8677947-8677966 | None:intergenic | 30.0% | |
| ATAGATAACTGAGAGATTTG+AGG | + | chr3.3:8677663-8677682 | None:intergenic | 30.0% | |
| ATAGTCAAGTATCCATATGT+AGG | + | chr3.3:8679369-8679388 | None:intergenic | 30.0% | |
| ATATCCAAATACCTCTGATT+AGG | + | chr3.3:8678658-8678677 | None:intergenic | 30.0% | |
| ATCAACTTTCAATAACAGGA+TGG | - | chr3.3:8677305-8677324 | MS.gene069326:intron | 30.0% | |
| ATCATTGGTGAAGAGATTTA+TGG | - | chr3.3:8676842-8676861 | MS.gene069326:intron | 30.0% | |
| ATGAACAAGTGTAGTGAAAA+AGG | + | chr3.3:8677346-8677365 | None:intergenic | 30.0% | |
| ATGACGTAAATTGATGAGTT+TGG | + | chr3.3:8676300-8676319 | None:intergenic | 30.0% | |
| ATGTGATAATTGACGGAATT+TGG | - | chr3.3:8677836-8677855 | MS.gene069326:intron | 30.0% | |
| ATTACCTTTGTATTGTGAGA+TGG | + | chr3.3:8676675-8676694 | None:intergenic | 30.0% | |
| ATTCCGTCAATTATCACATT+CGG | + | chr3.3:8677835-8677854 | None:intergenic | 30.0% | |
| ATTCGTTAATCTCCACATAA+GGG | + | chr3.3:8679293-8679312 | None:intergenic | 30.0% | |
| ATTGAGAGATTTATGCACAA+AGG | - | chr3.3:8679580-8679599 | MS.gene069326:CDS | 30.0% | |
| ATTGATTAAACTTTGGTCCA+CGG | + | chr3.3:8677200-8677219 | None:intergenic | 30.0% | |
| CTCTATAAAATGTCCTTCTT+TGG | - | chr3.3:8677258-8677277 | MS.gene069326:intron | 30.0% | |
| CTTCATCAACTTTCAATAAC+AGG | - | chr3.3:8677301-8677320 | MS.gene069326:intron | 30.0% | |
| CTTCCACAATAAAATATGAC+AGG | + | chr3.3:8676403-8676422 | None:intergenic | 30.0% | |
| CTTTCTATTTCAGAATGTGA+TGG | - | chr3.3:8676812-8676831 | MS.gene069326:intron | 30.0% | |
| GAATGTGATTAACCAGAATA+GGG | + | chr3.3:8678249-8678268 | None:intergenic | 30.0% | |
| GCAATTGTTTGGTTAAGAAT+AGG | + | chr3.3:8677967-8677986 | None:intergenic | 30.0% | |
| GCTAAGAATAATGAACAACA+AGG | - | chr3.3:8677627-8677646 | MS.gene069326:intron | 30.0% | |
| GTGTTATAGCATTACAAACA+AGG | - | chr3.3:8678971-8678990 | MS.gene069326:intron | 30.0% | |
| TAAGAATTGTTCCATGAAGA+TGG | + | chr3.3:8676466-8676485 | None:intergenic | 30.0% | |
| TACAACATACAAATGCTATC+AGG | + | chr3.3:8676215-8676234 | None:intergenic | 30.0% | |
| TACGTTAAAGAGACCAAAAA+AGG | + | chr3.3:8679463-8679482 | None:intergenic | 30.0% | |
| TATCCAAATACCTCTGATTA+GGG | + | chr3.3:8678657-8678676 | None:intergenic | 30.0% | |
| TCAACTTTCAATAACAGGAT+GGG | - | chr3.3:8677306-8677325 | MS.gene069326:intron | 30.0% | |
| TGAGAAAATTGTCAACAAAG+TGG | + | chr3.3:8678359-8678378 | None:intergenic | 30.0% | |
| TGATTATGAGTTTGAAAACG+TGG | - | chr3.3:8677537-8677556 | MS.gene069326:intron | 30.0% | |
| TTCTAATCTCAGTGTATGAA+AGG | + | chr3.3:8676187-8676206 | None:intergenic | 30.0% | |
| TTTCATGGAGCATATTAAAC+TGG | - | chr3.3:8678918-8678937 | MS.gene069326:intron | 30.0% | |
| ! | AACCCTGTCATATTTTATTG+TGG | - | chr3.3:8676397-8676416 | MS.gene069326:CDS | 30.0% |
| ! | ATATGGCAGTTAGTATCTTT+TGG | + | chr3.3:8678483-8678502 | None:intergenic | 30.0% |
| ! | ATCATCACATTCTTTTCTGA+AGG | + | chr3.3:8679530-8679549 | None:intergenic | 30.0% |
| ! | CACAATTTTGAATATGGTAG+TGG | + | chr3.3:8678273-8678292 | None:intergenic | 30.0% |
| ! | TAAAGGAGAAGTATGAAAAG+GGG | - | chr3.3:8677776-8677795 | MS.gene069326:intron | 30.0% |
| ! | TGTGATGGAATAAAGATCAT+TGG | - | chr3.3:8676827-8676846 | MS.gene069326:intron | 30.0% |
| ! | TTATAATTGCAACAAGTTGG+AGG | - | chr3.3:8677048-8677067 | MS.gene069326:intron | 30.0% |
| ! | TTGTCTGCAACAAATTTTCA+TGG | - | chr3.3:8678903-8678922 | MS.gene069326:intron | 30.0% |
| ! | TTTATTGTGGAAGAGCATAA+TGG | - | chr3.3:8676410-8676429 | MS.gene069326:CDS | 30.0% |
| ! | TTTCTTGTCCCTTAATGTTT+TGG | - | chr3.3:8676886-8676905 | MS.gene069326:intron | 30.0% |
| ! | TTTTTATTCCCAGGCTAAAT+TGG | - | chr3.3:8678036-8678055 | MS.gene069326:intron | 30.0% |
| !! | ATTCTGAAATAGAAAGCTTC+TGG | + | chr3.3:8676808-8676827 | None:intergenic | 30.0% |
| !!! | AATCAAATTGGTTTTCGTAC+GGG | - | chr3.3:8679078-8679097 | MS.gene069326:CDS | 30.0% |
| !!! | TTTTGTTTTCCCATATGCTT+TGG | + | chr3.3:8676368-8676387 | None:intergenic | 30.0% |
| AAAAAGGTTTGACCAAACGT+GGG | + | chr3.3:8677920-8677939 | None:intergenic | 35.0% | |
| AAAGAAGATGCCAAAGCATA+TGG | - | chr3.3:8676355-8676374 | MS.gene069326:CDS | 35.0% | |
| AAAGGAAGAAACTCAAGAGT+TGG | + | chr3.3:8677592-8677611 | None:intergenic | 35.0% | |
| AAAGGACTAAGAAACAAGCA+AGG | + | chr3.3:8679246-8679265 | None:intergenic | 35.0% | |
| AAGAAGATGCCAAAGCATAT+GGG | - | chr3.3:8676356-8676375 | MS.gene069326:CDS | 35.0% | |
| ACCAACAGTGAAATGTTTCA+AGG | + | chr3.3:8677518-8677537 | None:intergenic | 35.0% | |
| AGAGATTTATGCACAAAGGT+AGG | - | chr3.3:8679584-8679603 | MS.gene069326:CDS | 35.0% | |
| ATAGAATCCAAACCACCTTA+GGG | + | chr3.3:8678785-8678804 | None:intergenic | 35.0% | |
| ATAGCTTTCCAAATTGGCTA+AGG | - | chr3.3:8676693-8676712 | MS.gene069326:intron | 35.0% | |
| ATCCCGAATGTGATAATTGA+CGG | - | chr3.3:8677829-8677848 | MS.gene069326:intron | 35.0% | |
| CAACTTTCAATAACAGGATG+GGG | - | chr3.3:8677307-8677326 | MS.gene069326:intron | 35.0% | |
| CTTACCATCTCACAATACAA+AGG | - | chr3.3:8676668-8676687 | MS.gene069326:intron | 35.0% | |
| GACAATCTGAATCACATTGT+AGG | - | chr3.3:8679435-8679454 | MS.gene069326:CDS | 35.0% | |
| GAGAATTGTCCAAAACTGAT+TGG | - | chr3.3:8677457-8677476 | MS.gene069326:intron | 35.0% | |
| GAGTTAGATATACAGAGATG+TGG | - | chr3.3:8677100-8677119 | MS.gene069326:intron | 35.0% | |
| GCAAAACTAAACCATCTTCA+TGG | - | chr3.3:8676452-8676471 | MS.gene069326:intron | 35.0% | |
| GCAGTAAGTGAAAAGGAATT+GGG | + | chr3.3:8678819-8678838 | None:intergenic | 35.0% | |
| GCATTACAAACAAGGTACAT+TGG | - | chr3.3:8678979-8678998 | MS.gene069326:intron | 35.0% | |
| GGTACAAGAAAAGAAATGGA+TGG | - | chr3.3:8676581-8676600 | MS.gene069326:intron | 35.0% | |
| GTTGTAGTAAATACCAGCTT+TGG | + | chr3.3:8678706-8678725 | None:intergenic | 35.0% | |
| TAAGTTATGGGTCCTACATA+TGG | - | chr3.3:8679354-8679373 | MS.gene069326:CDS | 35.0% | |
| TAGCAACGTAAATCCAAAGA+AGG | + | chr3.3:8677274-8677293 | None:intergenic | 35.0% | |
| TAGCTTTCCAAATTGGCTAA+GGG | - | chr3.3:8676694-8676713 | MS.gene069326:intron | 35.0% | |
| TAGTGCCTCTATAATCACTT+GGG | + | chr3.3:8676331-8676350 | None:intergenic | 35.0% | |
| TCCGAATCATTAGTCCTTAT+GGG | - | chr3.3:8678322-8678341 | MS.gene069326:intron | 35.0% | |
| TCCTTGAAACATTTCACTGT+TGG | - | chr3.3:8677514-8677533 | MS.gene069326:intron | 35.0% | |
| TCTCTTAAACTAAAGGGTTG+TGG | - | chr3.3:8676740-8676759 | MS.gene069326:intron | 35.0% | |
| TGCAGTAAGTGAAAAGGAAT+TGG | + | chr3.3:8678820-8678839 | None:intergenic | 35.0% | |
| TGCTAGCAAAACCAAGTTAT+GGG | - | chr3.3:8677893-8677912 | MS.gene069326:intron | 35.0% | |
| TGCTAGGAAGACTAAGTTAT+GGG | - | chr3.3:8679342-8679361 | MS.gene069326:CDS | 35.0% | |
| TGGATCTGATCTTAAAGAGT+TGG | - | chr3.3:8676430-8676449 | MS.gene069326:intron | 35.0% | |
| TGTAAAGAAGGAACATGTTG+AGG | + | chr3.3:8677016-8677035 | None:intergenic | 35.0% | |
| TTCACATGCAGTAAGTGAAA+AGG | + | chr3.3:8678826-8678845 | None:intergenic | 35.0% | |
| TTCCGAATCATTAGTCCTTA+TGG | - | chr3.3:8678321-8678340 | MS.gene069326:intron | 35.0% | |
| TTCCGTCAATTATCACATTC+GGG | + | chr3.3:8677834-8677853 | None:intergenic | 35.0% | |
| ! | AAAGGAGAAGTATGAAAAGG+GGG | - | chr3.3:8677777-8677796 | MS.gene069326:intron | 35.0% |
| ! | AATAGAAAGCTTCTGGAGAA+AGG | + | chr3.3:8676801-8676820 | None:intergenic | 35.0% |
| ! | ACAGAGATGTGGTAGAATTT+TGG | - | chr3.3:8677111-8677130 | MS.gene069326:intron | 35.0% |
| ! | ATAGAAAGCTTCTGGAGAAA+GGG | + | chr3.3:8676800-8676819 | None:intergenic | 35.0% |
| ! | GACTTCAACTTTTTATTCCC+AGG | - | chr3.3:8678027-8678046 | MS.gene069326:intron | 35.0% |
| !! | TAAAGGAAACTCAAGTTGGA+AGG | + | chr3.3:8677433-8677452 | None:intergenic | 35.0% |
| !!! | ACAAGGTACATTGGTTTTTG+AGG | - | chr3.3:8678988-8679007 | MS.gene069326:intron | 35.0% |
| !!! | AGTAACTTTTTCAGGCTAGT+CGG | + | chr3.3:8677148-8677167 | None:intergenic | 35.0% |
| AACCTCTTTCCGAGGTTATT+TGG | - | chr3.3:8679011-8679030 | MS.gene069326:CDS | 40.0% | |
| AACTCCAACGCTTCAAGAAA+GGG | + | chr3.3:8677226-8677245 | None:intergenic | 40.0% | |
| AGAAAGTCTTCCCTAATCAG+AGG | - | chr3.3:8678644-8678663 | MS.gene069326:intron | 40.0% | |
| AGAGCTGGAATCATTTCCAA+TGG | - | chr3.3:8677399-8677418 | MS.gene069326:intron | 40.0% | |
| AGCTTTCCAAATTGGCTAAG+GGG | - | chr3.3:8676695-8676714 | MS.gene069326:intron | 40.0% | |
| AGTTACTCCTTCTGCGAAAT+CGG | - | chr3.3:8677161-8677180 | MS.gene069326:intron | 40.0% | |
| ATTGGAAATGATTCCAGCTC+TGG | + | chr3.3:8677400-8677419 | None:intergenic | 40.0% | |
| ATTTGATTGAAGAGCCTCCA+AGG | + | chr3.3:8676633-8676652 | None:intergenic | 40.0% | |
| CAAAAAGGTTTGACCAAACG+TGG | + | chr3.3:8677921-8677940 | None:intergenic | 40.0% | |
| CAAGTGTAGTGAAAAAGGCA+AGG | + | chr3.3:8677341-8677360 | None:intergenic | 40.0% | |
| CCCCATAAGGACTAATGATT+CGG | + | chr3.3:8678326-8678345 | None:intergenic | 40.0% | |
| CCGAATCATTAGTCCTTATG+GGG | - | chr3.3:8678323-8678342 | MS.gene069326:intron | 40.0% | |
| CTAGTGCCTCTATAATCACT+TGG | + | chr3.3:8676332-8676351 | None:intergenic | 40.0% | |
| CTTGTTGAAGCCATGAAATG+TGG | + | chr3.3:8678601-8678620 | None:intergenic | 40.0% | |
| GAACTCCCAAGTGATTATAG+AGG | - | chr3.3:8676323-8676342 | MS.gene069326:intron | 40.0% | |
| GACAACCAAGAAAGAGAGTT+GGG | + | chr3.3:8677736-8677755 | None:intergenic | 40.0% | |
| GAGCTGGAATCATTTCCAAT+GGG | - | chr3.3:8677400-8677419 | MS.gene069326:intron | 40.0% | |
| GATAACTGAGAGATTTGAGG+TGG | + | chr3.3:8677660-8677679 | None:intergenic | 40.0% | |
| GATAGAATCCAAACCACCTT+AGG | + | chr3.3:8678786-8678805 | None:intergenic | 40.0% | |
| GTGCTAGCAAAACCAAGTTA+TGG | - | chr3.3:8677892-8677911 | MS.gene069326:intron | 40.0% | |
| GTGCTAGGAAGACTAAGTTA+TGG | - | chr3.3:8679341-8679360 | MS.gene069326:CDS | 40.0% | |
| TACCAAATAACCTCGGAAAG+AGG | + | chr3.3:8679016-8679035 | None:intergenic | 40.0% | |
| TAGAATCCAAACCACCTTAG+GGG | + | chr3.3:8678784-8678803 | None:intergenic | 40.0% | |
| TGAATGTGTTTCCCCTATTC+TGG | - | chr3.3:8678234-8678253 | MS.gene069326:intron | 40.0% | |
| TGAGAAGATGAACAATTGGG+AGG | - | chr3.3:8676913-8676932 | MS.gene069326:intron | 40.0% | |
| TTGATTTCTTTCGCCAAAGC+TGG | - | chr3.3:8678690-8678709 | MS.gene069326:intron | 40.0% | |
| TTGTACCTTCGGAACCAAAA+AGG | + | chr3.3:8677936-8677955 | None:intergenic | 40.0% | |
| ! | AAGGAGAAGTATGAAAAGGG+GGG | - | chr3.3:8677778-8677797 | MS.gene069326:intron | 40.0% |
| ! | AGGCAGAGCTCTTTTCAAAT+TGG | + | chr3.3:8676996-8677015 | None:intergenic | 40.0% |
| ! | CACGTTTGGTCAAACCTTTT+TGG | - | chr3.3:8677919-8677938 | MS.gene069326:intron | 40.0% |
| ! | GCTTCAACAAGATTTGCTTC+AGG | - | chr3.3:8678610-8678629 | MS.gene069326:intron | 40.0% |
| ! | GGCAGAGCTCTTTTCAAATT+GGG | + | chr3.3:8676995-8677014 | None:intergenic | 40.0% |
| ! | TAATTTGCAAACGCTCTTGC+TGG | - | chr3.3:8676235-8676254 | MS.gene069326:CDS | 40.0% |
| ! | TAGAAAGCTTCTGGAGAAAG+GGG | + | chr3.3:8676799-8676818 | None:intergenic | 40.0% |
| ! | TCTCTCGAACCAATCAGTTT+TGG | + | chr3.3:8677469-8677488 | None:intergenic | 40.0% |
| ! | TTAGTCTTCCTAGCACTATG+TGG | + | chr3.3:8679337-8679356 | None:intergenic | 40.0% |
| ! | TTTTCCCTTTCTTGAAGCGT+TGG | - | chr3.3:8677219-8677238 | MS.gene069326:intron | 40.0% |
| ! | TTTTGCTAGCACTAATGTGG+TGG | + | chr3.3:8677884-8677903 | None:intergenic | 40.0% |
| !! | AAAACTGATTGGTTCGAGAG+AGG | - | chr3.3:8677468-8677487 | MS.gene069326:intron | 40.0% |
| !! | CTTCCCTAATCAGAGGTATT+TGG | - | chr3.3:8678651-8678670 | MS.gene069326:intron | 40.0% |
| !! | GCAGAAGGAGTAACTTTTTC+AGG | + | chr3.3:8677156-8677175 | None:intergenic | 40.0% |
| !! | TGGTTTTGCTAGCACTAATG+TGG | + | chr3.3:8677887-8677906 | None:intergenic | 40.0% |
| !!! | CACATTGTAGGACCCTTTTT+TGG | - | chr3.3:8679447-8679466 | MS.gene069326:CDS | 40.0% |
| !!! | TCAAACCTTTTTGGTTCCGA+AGG | - | chr3.3:8677928-8677947 | MS.gene069326:intron | 40.0% |
| AACTAGTCGCATCCCTTATG+TGG | - | chr3.3:8679278-8679297 | MS.gene069326:CDS | 45.0% | |
| ACTTTGTTCCTTTGCCCCTA+AGG | - | chr3.3:8678767-8678786 | MS.gene069326:intron | 45.0% | |
| AGATGAACAATTGGGAGGAG+TGG | - | chr3.3:8676918-8676937 | MS.gene069326:intron | 45.0% | |
| AGGAGTGGTTGTGTCTTGAA+GGG | - | chr3.3:8676933-8676952 | MS.gene069326:intron | 45.0% | |
| CAACTCCAACGCTTCAAGAA+AGG | + | chr3.3:8677227-8677246 | None:intergenic | 45.0% | |
| CGACAACCAAGAAAGAGAGT+TGG | + | chr3.3:8677737-8677756 | None:intergenic | 45.0% | |
| CTCTACCCAACTCTCTTTCT+TGG | - | chr3.3:8677728-8677747 | MS.gene069326:intron | 45.0% | |
| CTGGAATCATTTCCAATGGG+TGG | - | chr3.3:8677403-8677422 | MS.gene069326:intron | 45.0% | |
| GGAAGAAACTCAAGAGTTGG+TGG | + | chr3.3:8677589-8677608 | None:intergenic | 45.0% | |
| GGCGACATACCAAATAACCT+CGG | + | chr3.3:8679023-8679042 | None:intergenic | 45.0% | |
| GTGTAGTGAAAAAGGCAAGG+AGG | + | chr3.3:8677338-8677357 | None:intergenic | 45.0% | |
| GTGTGTCTGTGCAGAAAACA+CGG | - | chr3.3:8679503-8679522 | MS.gene069326:CDS | 45.0% | |
| GTTCTTTGTTGCCACCACTT+GGG | - | chr3.3:8676768-8676787 | MS.gene069326:intron | 45.0% | |
| TATGTACGATTGTCCAGAGC+TGG | - | chr3.3:8677384-8677403 | MS.gene069326:intron | 45.0% | |
| TGAAGAGGAAGAAGATGTGC+TGG | + | chr3.3:8678124-8678143 | None:intergenic | 45.0% | |
| TGAATGCAATGTGTCTGCCT+TGG | - | chr3.3:8676613-8676632 | MS.gene069326:intron | 45.0% | |
| TGACAACCCCTTAGCCAATT+TGG | + | chr3.3:8676704-8676723 | None:intergenic | 45.0% | |
| TGGTTAATGAGCTCCCCATA+AGG | + | chr3.3:8678339-8678358 | None:intergenic | 45.0% | |
| TGTGTCTGTGCAGAAAACAC+GGG | - | chr3.3:8679504-8679523 | MS.gene069326:CDS | 45.0% | |
| TGTTCTTTGTTGCCACCACT+TGG | - | chr3.3:8676767-8676786 | MS.gene069326:intron | 45.0% | |
| !! | CTTTCTTGAAGCGTTGGAGT+TGG | - | chr3.3:8677225-8677244 | MS.gene069326:intron | 45.0% |
| !! | TTGAAGCGTTGGAGTTGGAT+TGG | - | chr3.3:8677230-8677249 | MS.gene069326:intron | 45.0% |
| !! | TTTTGAGGAACCTCTTTCCG+AGG | - | chr3.3:8679003-8679022 | MS.gene069326:CDS | 45.0% |
| ACCACGCTCCAATTTAGCCT+GGG | + | chr3.3:8678047-8678066 | None:intergenic | 50.0% | |
| ACTTTGGTCCACGGAGAACT+CGG | + | chr3.3:8677191-8677210 | None:intergenic | 50.0% | |
| ATGCAATGTGTCTGCCTTGG+AGG | - | chr3.3:8676616-8676635 | MS.gene069326:intron | 50.0% | |
| CAAACGTGGGACCCATAACT+TGG | + | chr3.3:8677907-8677926 | None:intergenic | 50.0% | |
| CAAGTTATGGGTCCCACGTT+TGG | - | chr3.3:8677905-8677924 | MS.gene069326:intron | 50.0% | |
| CTGGCAAGCTCTCAAGACTA+GGG | + | chr3.3:8677699-8677718 | None:intergenic | 50.0% | |
| GAGGAGTGGTTGTGTCTTGA+AGG | - | chr3.3:8676932-8676951 | MS.gene069326:intron | 50.0% | |
| GCTAGCACTAATGTGGTGGT+GGG | + | chr3.3:8677880-8677899 | None:intergenic | 50.0% | |
| GTGGCAACAGATTCTCCTCT+GGG | + | chr3.3:8677570-8677589 | None:intergenic | 50.0% | |
| TCCTAGCACTATGTGGCGAT+GGG | + | chr3.3:8679330-8679349 | None:intergenic | 50.0% | |
| TCTGGCAAGCTCTCAAGACT+AGG | + | chr3.3:8677700-8677719 | None:intergenic | 50.0% | |
| TCTTGAGAGCTTGCCAGAGA+AGG | - | chr3.3:8677702-8677721 | MS.gene069326:intron | 50.0% | |
| TGCTAGCACTAATGTGGTGG+TGG | + | chr3.3:8677881-8677900 | None:intergenic | 50.0% | |
| TTCCTAGCACTATGTGGCGA+TGG | + | chr3.3:8679331-8679350 | None:intergenic | 50.0% | |
| TTGCAAACGCTCTTGCTGGA+AGG | - | chr3.3:8676239-8676258 | MS.gene069326:CDS | 50.0% | |
| TTGGAAGGCAAACCACCCAT+TGG | + | chr3.3:8677418-8677437 | None:intergenic | 50.0% | |
| TTGTTCCTTTGCCCCTAAGG+TGG | - | chr3.3:8678770-8678789 | MS.gene069326:intron | 50.0% | |
| ! | CAACAGATTCTCCTCTGGGA+AGG | + | chr3.3:8677566-8677585 | None:intergenic | 50.0% |
| ! | GAGAAGTATGAAAAGGGGGG+AGG | - | chr3.3:8677781-8677800 | MS.gene069326:intron | 50.0% |
| !! | ATTGGTTCGAGAGAGGAGTG+GGG | - | chr3.3:8677475-8677494 | MS.gene069326:intron | 50.0% |
| !! | GATTGGTTCGAGAGAGGAGT+GGG | - | chr3.3:8677474-8677493 | MS.gene069326:intron | 50.0% |
| !! | TGATTGGTTCGAGAGAGGAG+TGG | - | chr3.3:8677473-8677492 | MS.gene069326:intron | 50.0% |
| AAACGTGGAGTCCTTCCCAG+AGG | - | chr3.3:8677552-8677571 | MS.gene069326:intron | 55.0% | |
| CACCACGCTCCAATTTAGCC+TGG | + | chr3.3:8678048-8678067 | None:intergenic | 55.0% | |
| CCAAACCACCTTAGGGGCAA+AGG | + | chr3.3:8678778-8678797 | None:intergenic | 55.0% | |
| CCTTTGCCCCTAAGGTGGTT+TGG | - | chr3.3:8678775-8678794 | MS.gene069326:intron | 55.0% | |
| GCTCTCAAGACTAGGGCAGT+TGG | + | chr3.3:8677692-8677711 | None:intergenic | 55.0% | |
| GGTGGCAACAGATTCTCCTC+TGG | + | chr3.3:8677571-8677590 | None:intergenic | 55.0% | |
| TCCCAGGCTAAATTGGAGCG+TGG | - | chr3.3:8678043-8678062 | MS.gene069326:intron | 55.0% | |
| TCCCATCGCCACATAGTGCT+AGG | - | chr3.3:8679326-8679345 | MS.gene069326:CDS | 55.0% | |
| TGAGAGCTTGCCAGAGAAGG+AGG | - | chr3.3:8677705-8677724 | MS.gene069326:intron | 55.0% | |
| TTGGGTAGAGCCTCCTTCTC+TGG | + | chr3.3:8677718-8677737 | None:intergenic | 55.0% | |
| ! | GCGTTGGAGTTGGATTGGAG+TGG | - | chr3.3:8677235-8677254 | MS.gene069326:intron | 55.0% |
| !! | CGGTGTACCGATTTCGCAGA+AGG | + | chr3.3:8677171-8677190 | None:intergenic | 55.0% |
| TCGGTACACCGAGTTCTCCG+TGG | - | chr3.3:8677180-8677199 | MS.gene069326:intron | 60.0% | |
| TTGGCTGTCGCAGCATCTGC+AGG | + | chr3.3:8676515-8676534 | None:intergenic | 60.0% | |
| ! | AAAAGGGGGGAGGAGAGCGT+TGG | - | chr3.3:8677791-8677810 | MS.gene069326:intron | 60.0% |
| !! | AGAAAGGGGAGCGTCCCAAG+TGG | + | chr3.3:8676785-8676804 | None:intergenic | 60.0% |
| !! | AAGGGGAGCGTCCCAAGTGG+TGG | + | chr3.3:8676782-8676801 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 8676138 | 8679818 | 8676138 | ID=MS.gene069326 |
| chr3.3 | mRNA | 8676138 | 8679818 | 8676138 | ID=MS.gene069326.t1;Parent=MS.gene069326 |
| chr3.3 | exon | 8679267 | 8679818 | 8679267 | ID=MS.gene069326.t1.exon1;Parent=MS.gene069326.t1 |
| chr3.3 | CDS | 8679267 | 8679818 | 8679267 | ID=cds.MS.gene069326.t1;Parent=MS.gene069326.t1 |
| chr3.3 | exon | 8679002 | 8679131 | 8679002 | ID=MS.gene069326.t1.exon2;Parent=MS.gene069326.t1 |
| chr3.3 | CDS | 8679002 | 8679131 | 8679002 | ID=cds.MS.gene069326.t1;Parent=MS.gene069326.t1 |
| chr3.3 | exon | 8676355 | 8676439 | 8676355 | ID=MS.gene069326.t1.exon3;Parent=MS.gene069326.t1 |
| chr3.3 | CDS | 8676355 | 8676439 | 8676355 | ID=cds.MS.gene069326.t1;Parent=MS.gene069326.t1 |
| chr3.3 | exon | 8676138 | 8676260 | 8676138 | ID=MS.gene069326.t1.exon4;Parent=MS.gene069326.t1 |
| chr3.3 | CDS | 8676138 | 8676260 | 8676138 | ID=cds.MS.gene069326.t1;Parent=MS.gene069326.t1 |
| Gene Sequence |
| Protein sequence |
